Psyllid ID: psy10858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MSNFRSKLAFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEEALKNESLSLLLEGSPDL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHccccHHHHHHcccccccccccEEEEEEEEEEccccEEEEcccEEEEccccEEEEEccccccHHHHHHHHHcccccccEEEEEEccccccccHHHHcccccEEcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHccEEEEEEccEEEEEccHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccEEcccccHHHHHHHHHcccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcccccccEcHcHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccHHHccccccccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEccccccHHHHHHHHHccccccEEEEEEcccccccccHHHHHccHcHHEEHEcccccccHHHHEEcccEEccccHHHHHHHHHHHHHHHcccccccccHHcccHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHcEEEEEcccEEEEEccHHHHHccccccEEEEEcccccccccEEEcccccEEEccccccccccccccEEEEEccccccEEccccccccccEEEEEEEEcccEEEEEEcccccccccccEEccccccEEEEEEcccccccEEEEEccccHHHHcccccccEEEEEcccccc
Coil and Loop (DISEMBL)
msnfrsklaffrtqpcplilpiltpLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLEkekeeeedegkeeeeekedegkkeeeeeadegkntekeelkpsnvvlnncsLVVKRREFFVLLGASSAGKTTLLKAIVGLknisqgeiwvlgghpasiyhktagskvgympqelAMFGELTIKETLNFFGMIYGMDESIWLFQMRKyshvlklpnlerpvkylsggqkrRLSFTIAIlhkpqliildepcvgvdplVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRiiaqdspdgfkskysmpklSDVFYKItnddgtssgppaetskaeepevkleyihtpfirkIFPVAIfnatmgsppaglkmGVVNYELRGefersgnnspycpvnhdclikspkarksctllscldkdtiklkyfpdeeSAEEALKNESLSLLLEGSPDL
Flexible Loop (DISEMBL)
MSNFRSKLAFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLekekeeeedegkeeeeekedegkkeeeeeadegkntekeelkpsnvvlnncsLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILhkpqliildepCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIaqdspdgfkskYSMPKLSDVFYKITNDdgtssgppaetskaeepeVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFErsgnnspycpVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEealkneslslllegspdl
Low Complexity Region (SEG)
MSNFRSKLAFFRTQPCplilpiltpltlliytlCHGCHKFTIRLWVlllyeltlecytlekekeeeedegkeeeeekedegkkeeeeeadegkntekeeLKPsnvvlnncslvvKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEEALKNESLSLLLEGSPDL
Disordered region (IsUnstruct)
******KLAFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTL*********************************************VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD*************LSDVFYKI*********************VKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYF*************************
Disordered Region (DISOPRED)
*****SK*AFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLE***********************************EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYK****************************HTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEEALKNESLSLLLEGSPDL
Disordered Region (DISEMBL)
MSNFRSKLAFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLE**************************************ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDD***************PEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEEALKNESLSL********
Disordered Region (DISPRO)
*****SKLAFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLEKEKEEEE*E***************EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEEALKNESLSLLLEG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNFRSKLAFFRTQPCPLILPILTPLTLLIYTLCHGCHKFTIRLWVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKYFPDEESAEEALKNESLSLLLEGSPDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
Q55EH8	701	ABC transporter G family	yes	N/A	0.450	0.293	0.401	4e-38
Q8T674	730	ABC transporter G family	no	N/A	0.494	0.309	0.372	2e-35
P0A9U2	578	Uncharacterized ABC trans	yes	N/A	0.479	0.378	0.318	7e-30
P0A9U1	578	Uncharacterized ABC trans	N/A	N/A	0.479	0.378	0.318	7e-30
O07016	301	Uncharacterized ABC trans	yes	N/A	0.505	0.767	0.326	5e-29
P37624	911	Uncharacterized ABC trans	N/A	N/A	0.549	0.275	0.268	1e-27
Q39GT7	304	Nod factor export ATP-bin	yes	N/A	0.437	0.657	0.349	6e-27
P72335	304	Nod factor export ATP-bin	N/A	N/A	0.457	0.687	0.331	1e-26
Q1BWI2	304	Nod factor export ATP-bin	yes	N/A	0.459	0.690	0.344	6e-26
P23703	340	Nod factor export ATP-bin	yes	N/A	0.461	0.620	0.324	1e-25

>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum GN=abcG23 PE=3 SV=2

 Score =  159 bits (402), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 128/209 (61%), Gaps = 3/209 (1%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           L+G+S +GKTT+LK I+G      G + V G  P     +  GS VGY PQ++ ++ E+T
Sbjct: 37  LIGSSGSGKTTILKTILGKLKQDDGIVQVFGKEPCGKGSEIPGSSVGYAPQDVCLYNEIT 96

Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKP 241
           I+ETL+FF  I+ M +  ++ +      +L+LP+L + +  LSGGQ+RR+S   A++H P
Sbjct: 97  IEETLSFFASIHRMPKDEYIKKRDSLVEILELPSLSKIISELSGGQQRRVSLATALIHSP 156

Query: 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEANDASEVAFLYKGRI 299
           +L+ILDEP VGV PLV  ++W+ L +F+ K  G T+I+TT Y++E      +  L  GRI
Sbjct: 157 KLLILDEPTVGVCPLVSSKIWEHL-IFLTKNFGVTIIITTHYLQECRSCDNIFLLRNGRI 215

Query: 300 IAQDSPDGFKSKYSMPKLSDVFYKITNDD 328
           +    P+   SKY    L DV+YK+   D
Sbjct: 216 LESGPPNYLLSKYECSLLEDVYYKLCRGD 244

Dictyostelium discoideum (taxid: 44689)

>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           V++N +L +K      L+GAS +GKTT+L+ I+G      GE+ V G  P  I     GS
Sbjct: 29  VIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRLIPDSGEVLVFGKRPHDI-GGVPGS 87

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPVKYLS 224
             G+ PQE A++ +LT+  TLNFF  ++ + +  +  +  +   +L LP +  R V  LS
Sbjct: 88  ICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKKNEIIKLLDLPQINSRSVGLLS 147

Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE 284
           GGQK+R+S  +A+LH P+L+ILDEP VG+D  V   +W  L+     G T+I+TT YI E
Sbjct: 148 GGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSLANSGVTIIITTHYINE 207

Query: 285 ANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSS 332
           A  +  V  L  G+I+   +P+    +Y    L +VF K+   D   S
Sbjct: 208 AVGSDNVFLLRDGKILENGAPNYLIERYESQTLEEVFLKLCKRDNAQS 255

Dictyostelium discoideum (taxid: 44689)

>sp|P0A9U2|YBHF_SHIFL Uncharacterized ABC transporter ATP-binding protein YbhF OS=Shigella flexneri GN=ybhF PE=3 SV=1

 Score =  132 bits (331), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167
           ++ +  VKR E F LLG + AGK+T  K + GL   + G+  VLG        K A   +
Sbjct: 346 DHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGK-ARQHL 404

Query: 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGG 226
           GYM Q+ +++G LT+++ L FF  +YG+       ++ + S    L ++       L  G
Sbjct: 405 GYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLG 464

Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
            K+RL+   +++H+P ++ LDEP  GVDPL R+  W  +   V KG TV++TT +++EA 
Sbjct: 465 FKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAE 524

Query: 287 DASEVAFLYKGRIIAQDSPDGFKSKYSM-----PKLSDVFYKITND 327
               +  +Y+G++IA  +PD  K++ +      P +   F ++ +D
Sbjct: 525 YCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHD 570

Shigella flexneri (taxid: 623)

>sp|P0A9U1|YBHF_ECOLI Uncharacterized ABC transporter ATP-binding protein YbhF OS=Escherichia coli (strain K12) GN=ybhF PE=1 SV=1

 Score =  132 bits (331), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167
           ++ +  VKR E F LLG + AGK+T  K + GL   + G+  VLG        K A   +
Sbjct: 346 DHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGK-ARQHL 404

Query: 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGG 226
           GYM Q+ +++G LT+++ L FF  +YG+       ++ + S    L ++       L  G
Sbjct: 405 GYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLG 464

Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
            K+RL+   +++H+P ++ LDEP  GVDPL R+  W  +   V KG TV++TT +++EA 
Sbjct: 465 FKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAE 524

Query: 287 DASEVAFLYKGRIIAQDSPDGFKSKYSM-----PKLSDVFYKITND 327
               +  +Y+G++IA  +PD  K++ +      P +   F ++ +D
Sbjct: 525 YCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHD 570

Escherichia coli (strain K12) (taxid: 83333)

>sp|O07016|YVFR_BACSU Uncharacterized ABC transporter ATP-binding protein YvfR OS=Bacillus subtilis (strain 168) GN=yvfR PE=3 SV=1

 Score =  129 bits (324), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 23/254 (9%)

Query: 97  KEELKPSNV--------VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148
           KE +  SNV         +NN S  +++ E   +LG + AGKTT++  I+GL   S+GEI
Sbjct: 3   KEAVTVSNVTKHFQRKTAVNNISFSIEKGEIAAILGPNGAGKTTVVSMILGLLKPSEGEI 62

Query: 149 WVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQM 204
            +    P     +    K+G M QE+++   L + E L  F   Y     M E + L  +
Sbjct: 63  KLFNRVPDD---QQVREKIGVMLQEVSVMPGLKVDEILELFRSYYPNPLSMKELVSLTAL 119

Query: 205 RKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
            K        +L+   + LSGGQKRRLSF +A+   P+L+ILDEP VG+D   R R W  
Sbjct: 120 TK-------EDLKTRAEKLSGGQKRRLSFALALAGNPELLILDEPTVGMDTSSRHRFWQT 172

Query: 265 LQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYK 323
           +     +G+T+I +T Y++EA+DA++ + F  +G+++A  SP   +S+     +S   + 
Sbjct: 173 IHGLSDQGKTIIFSTHYLQEADDAAQRILFFTEGQLVADGSPMQIRSRIQKQSVSFTLHS 232

Query: 324 ITNDDGTSSGPPAE 337
             + +  S  P  E
Sbjct: 233 SESLERLSCHPEVE 246

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|P37624|YHIH_ECOLI Uncharacterized ABC transporter ATP-binding protein YhiH OS=Escherichia coli (strain K12) GN=yhiH PE=3 SV=3

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 137/264 (51%), Gaps = 13/264 (4%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           S V +++ +  + R E F  LG++  GK+T +K + GL   S+GE W+ G  P       
Sbjct: 288 SFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFG-QPVDPKDID 346

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV-K 221
              +VGYM Q  +++ ELT+++ L     ++ + E+    ++ + S   KL ++E  + +
Sbjct: 347 TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPE 406

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQ 280
            L  G ++RLS  +A++H+P+++ILDEP  GVDP+ R   W L+     + + T+ ++T 
Sbjct: 407 SLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTH 466

Query: 281 YIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETSK 340
           ++ EA     ++ ++ G+++A  +P     K     L + F     +         ++++
Sbjct: 467 FMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFIAYLQEAA------GQSNE 520

Query: 341 AEEPEVKLEYIHTP----FIRKIF 360
           AE P V  +  H P     +R++F
Sbjct: 521 AEAPPVVHDTTHAPRQGFSLRRLF 544

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q39GT7|NODI_BURS3 Nod factor export ATP-binding protein I OS=Burkholderia sp. (strain 383) GN=nodI PE=3 SV=2

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 3/203 (1%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           +V+N  S  V+  E + LLG + AGKTT LK ++GL +   G I  L G P     + A 
Sbjct: 19  LVVNGLSFTVQAGECYGLLGPNGAGKTTTLKMLLGLTHPDAGTIS-LCGEPVPSRARHAR 77

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYL 223
            +VG +PQ   +  + T++E L  FG  +GM        ++      KL N  +  V  L
Sbjct: 78  QRVGVVPQFDNLDPDFTVRENLLVFGRYFGMSAQAAHALVKPLLEFAKLENKADAKVGEL 137

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
           SGG KRRL+   A+++ P +++LDEP  G+DP  R  MW+ L+  + +G+T+++TT ++E
Sbjct: 138 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILITTHFME 197

Query: 284 EAND-ASEVAFLYKGRIIAQDSP 305
           EA      +  + +GR IA+ +P
Sbjct: 198 EAERLCDRLCVIEEGRKIAEGAP 220

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Burkholderia sp. (strain 383) (taxid: 269483)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|P72335|NODI_RHIS3 Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain N33) GN=nodI PE=3 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 17/226 (7%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           +V+N  S  V   E F LLG + AGK+T+ + ++G+     G+I VLG  P     + A 
Sbjct: 19  LVVNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPDAGKITVLG-EPVGARSRLAR 77

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV----LKLPNLERP- 219
             +G +PQ   +  E T++E L  FG  +GM         RK   V    L+   LE   
Sbjct: 78  KSIGVVPQFDNLDQEFTVRENLLVFGRYFGMS-------TRKIKEVIPSLLEFARLESKA 130

Query: 220 ---VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
              V  LSGG KRRL+   A+++ PQL+++DEP  G+DP  R  +W+ L+  + +G+T+I
Sbjct: 131 DARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLARGKTII 190

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
           +TT ++EEA      +  L  GR +A+ SP     ++   ++ ++F
Sbjct: 191 LTTHFMEEAERLCDRLCVLEHGRKLAEGSPHALIEEHIGCQVIEIF 236

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Rhizobium sp. (strain N33) (taxid: 103798)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q1BWI2|NODI_BURCA Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1

 Score =  119 bits (297), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 93  KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
           +N EK       +V+N  S  VK  E + LLG + AGKTT LK ++GL +   G I  L 
Sbjct: 9   RNVEKR--YGDKLVVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPDAGTIS-LC 65

Query: 153 GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
           G P     + A  +VG +PQ   +  + T++E L  F   +GM        +       K
Sbjct: 66  GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFSRYFGMSAQAARALVAPLLEFAK 125

Query: 213 LPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
           L N  +  V  LSGG KRRL+   A+++ P +++LDEP  G+DP  R  MW+ L+  + +
Sbjct: 126 LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 185

Query: 272 GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
           G+T+++TT ++EEA      +  + +GR IA+ +P
Sbjct: 186 GKTILITTHFMEEAERLCDRLCVIEEGRKIAEGAP 220

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Burkholderia cenocepacia (strain AU 1054) (taxid: 331271)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|P23703|NODI_RHILO Nod factor export ATP-binding protein I OS=Rhizobium loti (strain MAFF303099) GN=nodI PE=3 SV=2

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 17/228 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           + +V++  S  V   E F LLG + AGK+T+ + ++G+     G I VLG  P     + 
Sbjct: 53  NKIVVDELSFSVASGECFGLLGPNGAGKSTIARMLLGMTCPDAGTITVLG-VPVPARARL 111

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV----LKLPNLER 218
           A   +G +PQ   +  E T++E L  FG  +GM         R+   V    L+   LER
Sbjct: 112 ARRGIGVVPQFDNLDQEFTVRENLLVFGRYFGM-------STRQSEAVIPSLLEFARLER 164

Query: 219 P----VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
                V  LSGG KR L+   A+++ PQLI++DEP  G+DP  R  +W+ L+  + +G+T
Sbjct: 165 KADARVSELSGGMKRCLTMARALINDPQLIVMDEPTTGLDPHARHLIWERLRALLARGKT 224

Query: 275 VIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
           +I+TT ++EEA      +  L KGR IA+  P     ++   ++ +++
Sbjct: 225 IILTTHFMEEAERLCDRLCVLEKGRNIAEGGPQALIDEHIGCQVMEIY 272

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
170035865	806	abc transporter [Culex quinquefasciatus]	0.599	0.339	0.422	1e-56
345496012	768	PREDICTED: ABC transporter G family memb	0.518	0.308	0.457	3e-55
383851824	759	PREDICTED: ABC transporter G family memb	0.518	0.312	0.457	3e-55
347970382	777	AGAP003680-PA [Anopheles gambiae str. PE	0.584	0.343	0.419	4e-55
322789827	809	hypothetical protein SINV_01380 [Solenop	0.518	0.292	0.457	7e-55
307196735	760	ABC transporter G family member 20 [Harp	0.518	0.311	0.457	9e-55
157109209	872	abc transporter [Aedes aegypti] gi|10887	0.590	0.309	0.421	2e-54
321459328	806	ABC protein, subfamily ABCH [Daphnia pul	0.595	0.337	0.398	2e-54
321467478	746	ABC protein, subfamily ABCH [Daphnia pul	0.496	0.304	0.482	5e-54
350397026	767	PREDICTED: ABC transporter G family memb	0.518	0.308	0.449	7e-54

>gi|170035865|ref|XP_001845787.1| abc transporter [Culex quinquefasciatus] gi|167878311|gb|EDS41694.1| abc transporter [Culex quinquefasciatus]

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/279 (42%), Positives = 173/279 (62%), Gaps = 5/279 (1%)

Query: 64  EEEEDEGKEEEEEKEDEGKK--EEEEEADEGKNTEKE--ELKPSNVVLNNCSLVVKRREF 119
           + + DEG E      D+G      ++ A   ++  K+    K  N VL+N ++ V +   
Sbjct: 39  QHDYDEGSETSVATIDDGGTMWARQQHAVSVRHAFKQYGSKKKPNQVLSNLNMTVAKGTI 98

Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
           + LLGAS  GKTTLL  IVG K ++QGEIWVLGG P +      G +VGYMPQE+A++GE
Sbjct: 99  YGLLGASGCGKTTLLSCIVGRKRLNQGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 158

Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH 239
            +I+ET+ +FG I+GM  +    +++   + L LP+  R VK LSGGQ+RR+SF +A++H
Sbjct: 159 FSIRETMMYFGWIFGMQTTEIRERLQFLLNFLDLPSETRLVKNLSGGQQRRVSFAVALMH 218

Query: 240 KPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR 298
            P+L+ILDEP VGVDPL+R+ +W+ L+ +     +TVI+TT YIEEA  A  +  +  GR
Sbjct: 219 DPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGR 278

Query: 299 IIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
           ++A++SP    S Y    L DVF K++   G  +  PAE
Sbjct: 279 LLAEESPACLLSMYRCSSLEDVFLKLSRKQGQQNAAPAE 317

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496012|ref|XP_001604973.2| PREDICTED: ABC transporter G family member 20-like isoform 1 [Nasonia vitripennis] gi|345496014|ref|XP_003427623.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Nasonia vitripennis]

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           K  N V+ N ++ V +   + LLGAS  GKTTLL  IVG + ++ GEIWVLGG P +   
Sbjct: 49  KNPNHVIQNLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGKPGTKGS 108

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
              G +VGYMPQE+A++GE TI+ET+ +FG I+GM  S  + +++     L LP+  R V
Sbjct: 109 GVPGKRVGYMPQEIALYGEFTIRETMMYFGWIFGMCTSEIVERLKFLLQFLDLPSQNRLV 168

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
           K LSGGQ+RR+SF +A++H P+L+ILDEP VGVDPL+R+ +W+ L+Q+     +TVI+TT
Sbjct: 169 KNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 228

Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
            YIEEA  A  +  +  GR++A++SP      Y+ P L DVF K++   G+   P  E
Sbjct: 229 HYIEEARQAHTIGLMRSGRLLAEESPRALLQMYNCPTLEDVFLKLSRKQGSYPQPATE 286

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851824|ref|XP_003701431.1| PREDICTED: ABC transporter G family member 23-like [Megachile rotundata]

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           K  N V+ N ++ V +   + LLGAS  GKTTLL  IVG + ++ GEIWVLGG P +   
Sbjct: 38  KNPNHVIQNLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGKPGTKGS 97

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
              G +VGYMPQE+A++GE TI+ET+ +FG I+GMD S    ++R     L LP+  R V
Sbjct: 98  GVPGKRVGYMPQEIALYGEFTIRETMMYFGWIFGMDTSEIAERLRFLLQFLDLPSQNRLV 157

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
           K LSGGQ+RR+SF +A++H P+L+ILDEP VGVDPL+R+ +W+ L+Q+     +TVI+TT
Sbjct: 158 KNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 217

Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
            YIEEA  A  +  +  GR++A++SP      Y+   L +VF +++   G  + PP E
Sbjct: 218 HYIEEARQAHTIGLMRSGRLLAEESPRALLQMYNCASLEEVFLQLSRVQGQYAQPPME 275

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970382|ref|XP_313462.4| AGAP003680-PA [Anopheles gambiae str. PEST] gi|333468907|gb|EAA08957.4| AGAP003680-PA [Anopheles gambiae str. PEST]

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/274 (41%), Positives = 170/274 (62%), Gaps = 7/274 (2%)

Query: 70  GKEEEEEKEDEG-----KKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLG 124
           G E      D+G     +++          +   + KP N VL+N ++ V +   + LLG
Sbjct: 22  GSETSVATIDDGGTMWSRQQNAVSVRHAFKSYGTKKKP-NQVLSNLNMTVAKGTIYGLLG 80

Query: 125 ASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184
           AS  GKTTLL  IVG K ++ GEIWVLGG P +      G++VGYMPQE+A++GE +I+E
Sbjct: 81  ASGCGKTTLLSCIVGRKRLNSGEIWVLGGKPGTKGSGVPGARVGYMPQEIALYGEFSIRE 140

Query: 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLI 244
           T+ +FG I+GM  S  + +++   + L LP+  R VK LSGGQ+RR+SF +A++H P+L+
Sbjct: 141 TMMYFGWIFGMHTSEIVERLQFLLNFLDLPSESRLVKNLSGGQQRRVSFAVALMHDPELL 200

Query: 245 ILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
           ILDEP VGVDPL+R+ +W+ L+ +     +TVI+TT YIEEA  A  +  +  GR++A++
Sbjct: 201 ILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGRLLAEE 260

Query: 304 SPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
           SP    S Y    L DVF K++   G ++  PAE
Sbjct: 261 SPSCLLSMYRCSSLEDVFLKLSRKQGQANVAPAE 294

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789827|gb|EFZ14974.1| hypothetical protein SINV_01380 [Solenopsis invicta]

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 1/238 (0%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           K  N VL N S+ V +   + LLGAS  GKTTLL  IVG + ++ GEIWVLGG P +   
Sbjct: 88  KNPNHVLQNLSMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGKPGTKGS 147

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
              G +VGYMPQE+A++GE TI+ET+ +FG I+GM  +  + ++R     L LP+  R V
Sbjct: 148 GVPGKRVGYMPQEIALYGEFTIRETMMYFGWIFGMGTAEIVERLRFLLQFLDLPSQNRLV 207

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
           K LSGGQ+RR+SF +A++H P+L+ILDEP VGVDPL+R+ +W+ L+Q+     +TVI+TT
Sbjct: 208 KNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 267

Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
            YIEEA  A  +  +  GR++A+++P      Y+   L DVF K++   G  + P  E
Sbjct: 268 HYIEEARQAHTIGLMRSGRLLAEEAPRTLLQMYNCASLEDVFLKLSRKQGQYAQPTTE 325

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196735|gb|EFN78194.1| ABC transporter G family member 20 [Harpegnathos saltator]

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           K  N V+ N S+ V +   + LLGAS  GKTTLL  IVG + ++ GEIWVLGG P +   
Sbjct: 37  KNPNHVIQNLSMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGKPGTKGS 96

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
              G +VGYMPQE A++GE TI+ET+ +FG I+GM  +  + ++R     L LP+  R V
Sbjct: 97  GVPGKRVGYMPQETALYGEFTIRETMMYFGWIFGMCTAEIVERLRFLLQFLDLPSQNRLV 156

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
           K LSGGQ+RR+SF +A++H P+L+ILDEP VGVDPL+R+ +W+ L+Q+     +TVI+TT
Sbjct: 157 KNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 216

Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
            YIEEA  A  +  +  GR++A+++P    S Y+   L +VF K++   G  + PP E
Sbjct: 217 HYIEEARQAHTIGLMRSGRLLAEEAPRTLLSMYNCASLEEVFLKLSRKQGQYAQPPTE 274

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109209|ref|XP_001650571.1| abc transporter [Aedes aegypti] gi|108879087|gb|EAT43312.1| AAEL005249-PA [Aedes aegypti]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 168/275 (61%), Gaps = 5/275 (1%)

Query: 68  DEGKEEEEEKEDEGKK--EEEEEADEGKNTEKE--ELKPSNVVLNNCSLVVKRREFFVLL 123
             G E      D+G      ++ A   ++  K+    K  N VL+N ++ V +   + LL
Sbjct: 116 SRGSETSVATIDDGGTMWARQQHAVSVRHAFKQYGTKKKPNQVLSNLNMTVAKGTIYGLL 175

Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
           GAS  GKTTLL  IVG K ++ GEIWVLGG P +      G +VGYMPQE+A++GE +I+
Sbjct: 176 GASGCGKTTLLSCIVGRKRLNSGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIR 235

Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243
           ET+ +FG I+GM  S    +++   + L LP+  R VK LSGGQ+RR+SF +A++H P+L
Sbjct: 236 ETMMYFGWIFGMQTSEIKERLQFLLNFLDLPSESRLVKNLSGGQQRRVSFAVALMHDPEL 295

Query: 244 IILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           +ILDEP VGVDPL+R+ +W+ L+ +     +TVI+TT YIEEA  A  +  +  GR++A+
Sbjct: 296 LILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGRLLAE 355

Query: 303 DSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
           +SP    S Y    L DVF K++   G  +  PAE
Sbjct: 356 ESPACLLSMYRCSSLEDVFLKLSRKQGQQNAAPAE 390

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459328|gb|EFX70383.1| ABC protein, subfamily ABCH [Daphnia pulex]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 177/301 (58%), Gaps = 29/301 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL   ++ +K+ + + LLGAS  GKTTLL  +VG ++++ GEI VLG  P +      G 
Sbjct: 59  VLEGLNMTIKKGDIYGLLGASGCGKTTLLSCLVGRRSLNSGEILVLGNEPGTPESGVPGP 118

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
           +VGYMPQELA+FG+ TIKETL +FG IY +  +    Q+   + +L LP  +R VK LSG
Sbjct: 119 RVGYMPQELALFGDFTIKETLQYFGRIYNLRAAFVDSQLEFLTKLLDLPASDRYVKTLSG 178

Query: 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEE 284
           GQ+RR+SF +A+ H+P+L+ILDEP VGVDPL+R  +W+ L++  V  GRTVI+TT YIEE
Sbjct: 179 GQQRRVSFAVALFHEPELLILDEPTVGVDPLLRHSIWNHLIRQSVDHGRTVIVTTHYIEE 238

Query: 285 ANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDG--------------T 330
           A  A+ +  +  GR++ ++SP+   + Y +P L  VF KI   DG              T
Sbjct: 239 ARQANTIGMMRSGRLLVEESPENLLNSYRLPSLEAVFLKICIRDGVKKRVEQRIGVAADT 298

Query: 331 SSGPPAETSKAEEPEV-KLEYIHTPFIRKI------------FPVAIFNATMGSPPAGLK 377
           S+GP      A  P+   +++++  F   I            FP    N++ G PP  ++
Sbjct: 299 STGPVVTCQTAARPQQPSVDHVNMAFDDSISQISVSEVEHPQFPATPTNSS-GEPPVNVE 357

Query: 378 M 378
           +
Sbjct: 358 L 358

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321467478|gb|EFX78468.1| ABC protein, subfamily ABCH [Daphnia pulex]

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 151/228 (66%), Gaps = 1/228 (0%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
           + VL+   + VK+   + LLGAS  GKTTLL  IVG ++   G++ VLGG P +      
Sbjct: 40  STVLDGLDMNVKKGTIYGLLGASGCGKTTLLSCIVGRRSFDSGQVMVLGGPPGTPDSGIP 99

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
           G +VGYMPQELA++GE TIKETL +FG IY ++      Q+   S +L LP   R VK L
Sbjct: 100 GPRVGYMPQELALYGEFTIKETLQYFGRIYKLEADFVDSQLDFLSKLLDLPPDHRYVKTL 159

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYI 282
           SGGQ+RR+SF +A+ H+P+L+ILDEP VGVDPL+R+ +WD L+Q  V  GRTVI+TT YI
Sbjct: 160 SGGQQRRVSFAVALFHEPELLILDEPTVGVDPLLRRSIWDHLVQQSVDHGRTVIITTHYI 219

Query: 283 EEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGT 330
           EEA  A  +  +  GR++A++SP+     Y +P L +VF K+   DG+
Sbjct: 220 EEARQADAIGMMRSGRLLAEESPENLLKNYGLPTLEEVFLKLCMGDGS 267

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397026|ref|XP_003484744.1| PREDICTED: ABC transporter G family member 23-like [Bombus impatiens]

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           K  N +L N ++ V +   + LLGAS  GKTTLL  IVG + ++ GEIWVLGG P +   
Sbjct: 48  KNPNHILQNLNMTVPKGSIYGLLGASGCGKTTLLSCIVGRRKLNAGEIWVLGGKPGTKGS 107

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
              G +VGYMPQE+A++GE +I+ET+ +FG I+GM       ++R     L LP   R V
Sbjct: 108 GVPGRRVGYMPQEIALYGEFSIRETMMYFGWIFGMCTEEIQERLRFLLQFLDLPTQNRLV 167

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
           K LSGGQ+RR+SF +A++H P+L+ILDEP VGVDPL+R+ +W+ L+Q+     +TVI+TT
Sbjct: 168 KNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGFKTVIITT 227

Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
            YIEEA  A  +  +  GR++A++SP    + ++   L + F K++  +G +S PPAE
Sbjct: 228 HYIEEARQAHTIGLMRSGRLLAEESPRALLTMFNCTSLEEAFLKLSRQEGQNSQPPAE 285

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
FB|FBgn0053970	777	CG33970 [Drosophila melanogast	0.446	0.262	0.473	2.2e-54
FB|FBgn0039594	808	CG9990 [Drosophila melanogaste	0.446	0.252	0.473	9.3e-51
FB|FBgn0031734	711	CG11147 [Drosophila melanogast	0.463	0.298	0.428	3.8e-46
ZFIN|ZDB-GENE-050517-42	705	abch1 "ATP-binding cassette, s	0.525	0.340	0.404	3.2e-44
DICTYBASE|DDB_G0269026	701	abcG23 "ABC transporter G fami	0.450	0.293	0.401	2.7e-41
DICTYBASE|DDB_G0267430	730	abcG20 "ABC transporter G fami	0.459	0.287	0.382	1.7e-35
TIGR_CMR|BA_2541	222	BA_2541 "ABC transporter, ATP-	0.446	0.918	0.336	2.3e-32
UNIPROTKB|Q81JU5	300	BA_5600 "ABC transporter, ATP-	0.428	0.653	0.354	7.1e-29
TIGR_CMR|BA_5600	300	BA_5600 "ABC transporter, ATP-	0.428	0.653	0.354	7.1e-29
TIGR_CMR|DET_0813	248	DET_0813 "ABC transporter, ATP	0.435	0.802	0.344	1.5e-28

FB|FBgn0053970 CG33970 [Drosophila melanogaster (taxid:7227)]

 Score = 491 (177.9 bits), Expect = 2.2e-54, Sum P(2) = 2.2e-54
 Identities = 97/205 (47%), Positives = 137/205 (66%)

Query:   122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
             LLGAS  GKTTLL  IVG + ++ GEIWVLGG P S      G ++GYMPQE+A++GE T
Sbjct:    82 LLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFT 141

Query:   182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKP 241
             ++ETL +FG+I  M +     +      +L LPN  + VK LSGGQ+RR+S  +A+LH+P
Sbjct:   142 MRETLIYFGIISAMSKGDIEDRTEFLLKLLNLPNASKFVKNLSGGQQRRVSLAVALLHEP 201

Query:   242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT-VIMTTQYIEEANDASEVAFLYKGRII 300
             +L+ILDEP VGVDP++R+ +WD L      G T VI+TT YI+E   A  +  L  G+++
Sbjct:   202 ELLILDEPTVGVDPVLRQSIWDHLVDITKNGHTTVIITTHYIDECAQAHMIGLLRGGKML 261

Query:   301 AQDSPDGFKSKYSMPKLSDVFYKIT 325
             A++SPD  + +Y+   L DVF K++
Sbjct:   262 AEESPDYLRQQYNADSLEDVFLKLS 286

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0039594 CG9990 [Drosophila melanogaster (taxid:7227)]

 Score = 486 (176.1 bits), Expect = 9.3e-51, Sum P(2) = 9.3e-51
 Identities = 97/205 (47%), Positives = 140/205 (68%)

Query:   122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
             LLGAS  GKTTLL  IVG + +  GEI+VLGG P +      G +VGYMPQE+A++GE +
Sbjct:   108 LLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFS 167

Query:   182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKP 241
             I+ET+ +FG I+GMD    L +++   + L LP+ +R VK LSGGQ+RR+SF +A++H P
Sbjct:   168 IQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSEKRLVKNLSGGQQRRVSFAVALMHDP 227

Query:   242 QLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
             +L+ILDEP VGVDPL+R+ +W+ L+ +     +TVI+TT YIEEA  A  +  +  G ++
Sbjct:   228 ELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLL 287

Query:   301 AQDSPDGFKSKYSMPKLSDVFYKIT 325
             A++SP    S Y    L +VF K++
Sbjct:   288 AEESPSVLLSIYKCISLEEVFLKLS 312

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0031734 CG11147 [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
 Identities = 93/217 (42%), Positives = 137/217 (63%)

Query:   116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
             R   + LLGAS  GKTTLL  IVG + ++ GE+ VLG  P        GS+VG+MPQE+A
Sbjct:    32 RGSIYGLLGASGCGKTTLLSCIVGQRRLNGGEVVVLGAKPGEPGSGVPGSRVGFMPQEIA 91

Query:   176 MFGELTIKETLNFFGMIYGM-DESIW-LFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
             +  E+T+KET+ +FG IYG+ DE I   F++ K   +L+LP   + +K  SGGQ+RRLSF
Sbjct:    92 LVEEMTVKETIFYFGRIYGLTDERIREKFKLLK--ELLQLPPARQMIKQCSGGQQRRLSF 149

Query:   234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQYIEEANDASEVA 292
               A++H P+L+ILDEP VG+DP++R+++WD L       +  VI+TT YIEEA  A+ + 
Sbjct:   150 ACAMIHDPELLILDEPTVGLDPMLREKIWDFLVETTRNSKLAVIITTHYIEEAKQANCIG 209

Query:   293 FLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDG 329
              +  G ++A+D+P     K+    + D F  ++   G
Sbjct:   210 LMRNGVLLAEDTPTNIMIKFGTQSIEDAFLILSQRQG 246

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-050517-42 abch1 "ATP-binding cassette, sub-family H, member 1" [Danio rerio (taxid:7955)]

 Score = 451 (163.8 bits), Expect = 3.2e-44, Sum P(2) = 3.2e-44
 Identities = 100/247 (40%), Positives = 141/247 (57%)

Query:   118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
             + + LLG S  GKTTLLK IVG   IS+G I VLG  PA   H+  G  VGYMPQ++A++
Sbjct:    46 QIYGLLGPSGCGKTTLLKCIVGTLKISRGHITVLGKPPAFPGHEVPGKMVGYMPQDIALY 105

Query:   178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237
              E TI  TL FFG I+G+       +M      L LP     VK LSGGQ+RR+S   A+
Sbjct:   106 NEFTISNTLWFFGRIHGLSSKETEARMSFLIDFLDLPQKHSLVKNLSGGQRRRVSLGAAL 165

Query:   238 LHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK 296
             L  P+L+ILDEP VGVDP++R ++W  L+++  G   ++I+TT YIEEA  A+ V  +  
Sbjct:   166 LQNPKLLILDEPTVGVDPVLRAKIWQHLVEIVRGGQVSIIITTHYIEEARQANTVGLMRN 225

Query:   297 GRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAETS-----KAEEPEVKLEYI 351
             GR++A+  PD    +++   L   F ++  +D   SGP           +  P+   + I
Sbjct:   226 GRLLAEGPPDAVMKQHNAATLETAFLQLC-EDSDQSGPKQSPQGRLLDSSPSPDSMRDEI 284

Query:   352 HTPFIRK 358
               P +RK
Sbjct:   285 REPILRK 291

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

DICTYBASE|DDB_G0269026 abcG23 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 419 (152.6 bits), Expect = 2.7e-41, Sum P(2) = 2.7e-41
 Identities = 84/209 (40%), Positives = 128/209 (61%)

Query:   122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
             L+G+S +GKTT+LK I+G      G + V G  P     +  GS VGY PQ++ ++ E+T
Sbjct:    37 LIGSSGSGKTTILKTILGKLKQDDGIVQVFGKEPCGKGSEIPGSSVGYAPQDVCLYNEIT 96

Query:   182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKP 241
             I+ETL+FF  I+ M +  ++ +      +L+LP+L + +  LSGGQ+RR+S   A++H P
Sbjct:    97 IEETLSFFASIHRMPKDEYIKKRDSLVEILELPSLSKIISELSGGQQRRVSLATALIHSP 156

Query:   242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEANDASEVAFLYKGRI 299
             +L+ILDEP VGV PLV  ++W+ L +F+ K  G T+I+TT Y++E      +  L  GRI
Sbjct:   157 KLLILDEPTVGVCPLVSSKIWEHL-IFLTKNFGVTIIITTHYLQECRSCDNIFLLRNGRI 215

Query:   300 IAQDSPDGFKSKYSMPKLSDVFYKITNDD 328
             +    P+   SKY    L DV+YK+   D
Sbjct:   216 LESGPPNYLLSKYECSLLEDVYYKLCRGD 244

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0267430 abcG20 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 372 (136.0 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
 Identities = 81/212 (38%), Positives = 120/212 (56%)

Query:   122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
             L+GAS +GKTT+L+ I+G      GE+ V G  P  I     GS  G+ PQE A++ +LT
Sbjct:    45 LIGASGSGKTTILRTILGRLIPDSGEVLVFGKRPHDI-GGVPGSICGFCPQEGALYYDLT 103

Query:   182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPVKYLSGGQKRRLSFTIAILHK 240
             +  TLNFF  ++ + +  +  +  +   +L LP +  R V  LSGGQK+R+S  +A+LH 
Sbjct:   104 LDHTLNFFSNVHQIPKDKFESKKNEIIKLLDLPQINSRSVGLLSGGQKKRVSLAVALLHS 163

Query:   241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
             P+L+ILDEP VG+D  V   +W  L+     G T+I+TT YI EA  +  V  L  G+I+
Sbjct:   164 PKLLILDEPTVGIDMEVASNIWSYLRSLANSGVTIIITTHYINEAVGSDNVFLLRDGKIL 223

Query:   301 AQDSPDGFKSKYSMPKLSDVFYKITNDDGTSS 332
                +P+    +Y    L +VF K+   D   S
Sbjct:   224 ENGAPNYLIERYESQTLEEVFLKLCKRDNAQS 255

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|BA_2541 BA_2541 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 70/208 (33%), Positives = 126/208 (60%)

Query:   115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
             ++ E F L+G S +GKTTL+K I G+   ++GE+ V   +  ++       ++GYM Q  
Sbjct:    10 EKAEIFGLVGPSGSGKTTLIKLIAGINEATEGEVLVYNTNMPNLNEM---KRIGYMAQAD 66

Query:   175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSF 233
             A++ EL+  E  +F   +YG+       ++ K   +++L  ++++ V++ SGG K+RLS 
Sbjct:    67 ALYEELSAYENADFMATMYGLKGKHKKERIEKVFDLVQLSQHMKKQVQHFSGGMKKRLSL 126

Query:   234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF 293
              IA+LH+P+++ILDEP VG+DPL+RK +W+       KG T+I+TT  ++EA     +  
Sbjct:   127 AIALLHEPEILILDEPTVGIDPLLRKTIWEKFYDLKKKGTTIIVTTHIMDEAEFCERLGL 186

Query:   294 LYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
             + +G+++A  + +  K + S  ++ DVF
Sbjct:   187 IREGKLVATGTTEELKKRVSSGRIEDVF 214

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|Q81JU5 BA_5600 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 73/206 (35%), Positives = 121/206 (58%)

Query:   118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
             E   LLG + AGKTT +  ++GLK+ ++G + + G +P    H+   + +G M QE+++ 
Sbjct:    31 EIVALLGPNGAGKTTTMSMMLGLKDPTEGTVSIFGKNPK---HRDVRNSLGAMLQEVSVI 87

Query:   178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237
               +T++E +  F   Y     +    + + S+ L+L   +R  K LSGGQKRRL+F +A+
Sbjct:    88 DSITVEEAIELFRSYY--TNPVAKETLLQLSN-LELERKQRCEK-LSGGQKRRLNFALAL 143

Query:   238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY-K 296
                P L+ LDEP VG+D   R+  W+ ++  V +G+T+I+TT Y+EEA+  ++   L+  
Sbjct:   144 AGNPDLLFLDEPTVGMDITSRRTFWETIRKLVSEGKTIILTTHYLEEADALADRILLFVN 203

Query:   297 GRIIAQDSPDGFKSKYSMPKLSDVFY 322
             G+IIA  +PD  K+  S   +S  FY
Sbjct:   204 GKIIADGTPDEMKATISRKTIS--FY 227

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|BA_5600 BA_5600 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 73/206 (35%), Positives = 121/206 (58%)

Query:   118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
             E   LLG + AGKTT +  ++GLK+ ++G + + G +P    H+   + +G M QE+++ 
Sbjct:    31 EIVALLGPNGAGKTTTMSMMLGLKDPTEGTVSIFGKNPK---HRDVRNSLGAMLQEVSVI 87

Query:   178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237
               +T++E +  F   Y     +    + + S+ L+L   +R  K LSGGQKRRL+F +A+
Sbjct:    88 DSITVEEAIELFRSYY--TNPVAKETLLQLSN-LELERKQRCEK-LSGGQKRRLNFALAL 143

Query:   238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY-K 296
                P L+ LDEP VG+D   R+  W+ ++  V +G+T+I+TT Y+EEA+  ++   L+  
Sbjct:   144 AGNPDLLFLDEPTVGMDITSRRTFWETIRKLVSEGKTIILTTHYLEEADALADRILLFVN 203

Query:   297 GRIIAQDSPDGFKSKYSMPKLSDVFY 322
             G+IIA  +PD  K+  S   +S  FY
Sbjct:   204 GKIIADGTPDEMKATISRKTIS--FY 227

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|DET_0813 DET_0813 "ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/212 (34%), Positives = 122/212 (57%)

Query:   120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
             F ++G + AGKTTL++ +VGL     G + +LG      + +    ++GYMPQ  +++ E
Sbjct:    34 FGIMGPNGAGKTTLIRIMVGLLRQKSGYLAILGKE----FSRQLEYQLGYMPQIHSLYTE 89

Query:   180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ER---PVKYLSGGQKRRLSFTI 235
             LT+ + ++FF  IYG+ +     +  +   V++L +L +R    V  LSGG K+R+S   
Sbjct:    90 LTVSQNIDFFARIYGLRDKT--LRKARIEEVIRLVDLWDRRNDAVMNLSGGMKQRVSLAC 147

Query:   236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295
             AI+H P +I LDEP VG+DP +R R W+  +    KG T+++++  +++A     +AFL 
Sbjct:   148 AIVHNPPVIFLDEPTVGLDPELRCRFWEYFKSLNQKGVTIVISSHTLDDAAHCDRLAFLR 207

Query:   296 KGRIIAQDSPDGFKSKYSMP--KLSDVF-YKI 324
             +GR+IA+ +P   K+        L D F Y I
Sbjct:   208 EGRVIAEGTPSELKAATGNADASLEDAFLYSI 239

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	457
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-62
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-50
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-47
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	8e-40
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-36
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-35
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-34
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-33
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	7e-33
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	7e-32
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-31
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	7e-31
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-30
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-30
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	5e-30
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	7e-29
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	9e-29
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-28
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-28
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-28
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	6e-28
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-27
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-27
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-27
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-27
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	6e-27
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	7e-27
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	7e-27
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-26
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-26
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	9e-26
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-25
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-25
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-25
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	4e-25
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	6e-25
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	8e-25
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	8e-25
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-24
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-24
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	6e-24
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	7e-24
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-23
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-23
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	7e-23
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-22
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-22
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-22
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-22
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-22
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-22
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-21
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-21
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-21
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-21
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-21
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	6e-21
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	7e-21
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-20
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-20
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-20
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-20
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	4e-20
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	8e-20
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	9e-20
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-19
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-19
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-19
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-19
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-19
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-19
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-19
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-19
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	5e-19
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	5e-19
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	7e-19
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	8e-19
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	1e-18
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-18
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	2e-18
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-18
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-18
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-18
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-18
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	3e-18
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	8e-18
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-17
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-17
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-17
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-17
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-17
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-17
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-17
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	3e-17
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	3e-17
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-17
COG4133	209	COG4133, CcmA, ABC-type transport system involved	4e-17
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	5e-17
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	1e-16
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-16
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-16
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-16
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-16
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-16
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-16
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-16
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	3e-16
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	6e-16
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	6e-16
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	7e-16
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-15
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-15
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-15
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-15
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-15
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	2e-15
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-15
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-15
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	4e-15
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	4e-15
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	4e-15
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	4e-15
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-15
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	4e-15
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	5e-15
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	6e-15
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-14
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	2e-14
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-14
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	2e-14
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-14
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-14
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	4e-14
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	5e-14
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	5e-14
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	6e-14
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	6e-14
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	8e-14
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-14
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	9e-14
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-13
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-13
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-13
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-13
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	4e-13
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	7e-13
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	8e-13
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	9e-13
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	9e-13
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-12
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-12
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-12
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-12
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-12
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-12
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-12
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-12
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-12
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	3e-12
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	3e-12
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	3e-12
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	4e-12
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-12
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	4e-12
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	6e-12
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-12
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-12
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	7e-12
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	8e-12
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	8e-12
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-11
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-11
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-11
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-11
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-11
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-11
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-11
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-11
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	2e-11
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	2e-11
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	3e-11
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-11
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-11
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	3e-11
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	4e-11
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-11
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	4e-11
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	4e-11
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	4e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-11
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	5e-11
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	5e-11
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	6e-11
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	6e-11
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	6e-11
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	9e-11
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-10
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-10
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-10
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-10
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	3e-10
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	5e-10
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	6e-10
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	8e-10
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	8e-10
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	1e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-09
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-09
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-09
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-09
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	3e-09
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-09
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-09
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	4e-09
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	5e-09
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	5e-09
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	5e-09
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	8e-09
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	9e-09
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-08
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-08
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-08
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	1e-08
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	1e-08
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-08
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	1e-08
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-08
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-08
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	2e-08
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-08
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-08
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-08
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-08
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-08
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-08
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-08
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	4e-08
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	5e-08
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	6e-08
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	6e-08
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	7e-08
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	8e-08
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	9e-08
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	9e-08
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	9e-08
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	1e-07
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	1e-07
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-07
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-07
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-07
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-07
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-07
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	2e-07
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-07
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	3e-07
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	3e-07
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	3e-07
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	3e-07
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-07
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	4e-07
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	5e-07
pfam13304	256	pfam13304, AAA_21, AAA domain	6e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	6e-07
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	8e-07
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	8e-07
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	9e-07
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	9e-07
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	9e-07
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	9e-07
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-06
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	1e-06
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	2e-06
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	2e-06
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-06
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-06
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-06
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	3e-06
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	3e-06
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	3e-06
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	4e-06
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-06
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	4e-06
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	4e-06
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-06
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	5e-06
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	6e-06
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	7e-06
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	8e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	1e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-05
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	2e-05
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	2e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-05
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	2e-05
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	2e-05
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	3e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	3e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	5e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	6e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-05
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	7e-05
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	7e-05
cd05832	106	cd05832, Ribosomal_L12p, Ribosomal protein L12p	8e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	9e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-04
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-04
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-04
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	2e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-04
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	4e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-04
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	4e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-04
pfam07133	164	pfam07133, Merozoite_SPAM, Merozoite surface prote	6e-04
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	7e-04
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	7e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	8e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	8e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	0.001
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.001
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	0.001
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.001
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.002
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	0.002
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	0.002
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	0.002
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.002
pfam09747	178	pfam09747, DUF2052, Coiled-coil domain containing	0.003
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	0.003
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.004
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	0.004

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  202 bits (516), Expect = 9e-62
 Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 4/249 (1%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
                 L+  S  V+  E F LLG + AGKTTLLK + GL   + GEI VLG +      
Sbjct: 15  GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG-YDVVKEP 73

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERP 219
                ++GY+PQE +++ ELT++E L FF  +YG+ +     ++ +   +  L +   + 
Sbjct: 74  AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK 133

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG-RTVIMT 278
           V+ LSGG K+RLS  +A+LH P+L+ILDEP  G+DP  R+ +W+LL+    +G  T++++
Sbjct: 134 VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS 193

Query: 279 TQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPAE 337
           T  +EEA +    V  L  G+IIA+ +P+  K K+    + ++  +         G    
Sbjct: 194 THILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLV 253

Query: 338 TSKAEEPEV 346
             + E  E+
Sbjct: 254 KGEEELAEI 262

Length = 293

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  170 bits (434), Expect = 1e-50
 Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%)

Query: 93  KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
           +N  K   K +   +++ SL V + E F LLG + AGKTT LK + G    + G  ++  
Sbjct: 4   RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI-N 62

Query: 153 GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
           G+      K A   +GY PQ  A+F ELT++E L F+  + G+ +S    ++     VL 
Sbjct: 63  GYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG 122

Query: 213 L-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
           L     +  + LSGG KR+LS  IA++  P +++LDEP  G+DP  R+ +WDL+   V K
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL-EVRK 181

Query: 272 GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309
           GR++I+TT  ++EA      +A +  G++    SP   K
Sbjct: 182 GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  161 bits (409), Expect = 2e-47
 Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 37/198 (18%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               L++ SL V++ E + LLG + AGKTTL+K I+GL     GEI VLG        + 
Sbjct: 12  KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEE 70

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
              ++GY+P+E +++  LT++E L                                    
Sbjct: 71  VKRRIGYLPEEPSLYENLTVRENL-----------------------------------K 95

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGG K+RL+   A+LH P+L+ILDEP  G+DP  R+  W+LL+    +G+T+++++  +
Sbjct: 96  LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155

Query: 283 EEAND-ASEVAFLYKGRI 299
           EEA      VA L  GRI
Sbjct: 156 EEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score =  142 bits (359), Expect = 8e-40
 Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 10/213 (4%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               +   S  V+R E F LLG + AGKTT +K +  L   + G   V  GH      + 
Sbjct: 12  DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV-AGHDVVREPRE 70

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ER 218
              ++G + Q+L++  ELT  E L     +YG+  +       +   +L    L    +R
Sbjct: 71  VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAER---RERIDELLDFVGLLEAADR 127

Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIM 277
            VK  SGG +RRL    +++H+P+++ LDEP +G+DP  R  +W+ ++    + G T+++
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187

Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK 309
           TT Y+EEA      VA +  GRIIA+ +P+  K
Sbjct: 188 TTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  132 bits (335), Expect = 3e-36
 Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 13/207 (6%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                L+  SL +     + LLG + AGKTTL++ +  L   S G I + G        +
Sbjct: 11  GKKRALDGVSLTLGP-GMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG-QDVLKQPQ 68

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPNLE--- 217
               ++GY+PQE  ++   T++E L++   + G+       +++     VL+L NL    
Sbjct: 69  KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK----EVKARVDEVLELVNLGDRA 124

Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
            + +  LSGG +RR+    A++  P ++I+DEP  G+DP  R R  +LL   +G+ R VI
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-LGEDRIVI 183

Query: 277 MTTQYIEE-ANDASEVAFLYKGRIIAQ 302
           ++T  +E+  +  ++VA L KG+++ +
Sbjct: 184 LSTHIVEDVESLCNQVAVLNKGKLVFE 210

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  132 bits (334), Expect = 3e-35
 Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 17/210 (8%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKTAGSK 166
           +  V+  E F  LG + AGKTT ++ +  L   + G   V G      P  +        
Sbjct: 13  NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRS----- 67

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ERPVKY 222
           +G +PQ  ++  +LT +E L   G +YG+ +        +   +L+L  L    +RPV  
Sbjct: 68  IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDE---AEERAEELLELFELGEAADRPVGT 124

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
            SGG +RRL    +++H+P ++ LDEP  G+DP  R+ +WD ++    +G T+++TT Y+
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184

Query: 283 EEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311
           EEA+     +A +  GRIIA+ +P+  K +
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  125 bits (317), Expect = 2e-34
 Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 51/198 (25%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                L+N SL +K  E   L+G + +GK+TLL+AI GL   + GEI + G   A +  +
Sbjct: 10  GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE 69

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
               ++GY+PQ                                                 
Sbjct: 70  ELRRRIGYVPQ------------------------------------------------- 80

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LSGGQ++R++   A+L  P L++LDEP  G+DP  R+R+ +LL+    +GRTVI+ T  
Sbjct: 81  -LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139

Query: 282 IEEANDAS-EVAFLYKGR 298
            E A  A+  V  L  G+
Sbjct: 140 PELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  124 bits (314), Expect = 2e-33
 Identities = 57/202 (28%), Positives = 110/202 (54%), Gaps = 6/202 (2%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               L++ S  V++ E F LLG + AGKTT ++ I+G+     GE+   G  P  I  + 
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-KPLDIAARN 70

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVK 221
              ++GY+P+E  ++ ++ + + L +   + G+ +     ++ ++   L+L     + V+
Sbjct: 71  ---RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE 127

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LS G ++++ F  A++H P+L+ILDEP  G+DP+  + + D+++     G+TVI++T  
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187

Query: 282 IEEAND-ASEVAFLYKGRIIAQ 302
           +E   +    V  L KGR +  
Sbjct: 188 MELVEELCDRVLLLNKGRAVLY 209

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  123 bits (311), Expect = 7e-33
 Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 13/201 (6%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L++ SL +K+ EF +++G + +GK+TLL+ + GL   + GE+ V G     +  K    
Sbjct: 16  ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75

Query: 166 KVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPNL----ER 218
           KVG + Q  +   F   T++E + F     G+ E     ++ +     L+L  L    +R
Sbjct: 76  KVGLVFQNPD-DQFFGPTVEEEVAFGLENLGLPEE----EIEERVEEALELVGLEGLRDR 130

Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
               LSGGQK+R++    +   P +++LDEP  G+DP  R+ + +LL+    +G+T+I+ 
Sbjct: 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIV 190

Query: 279 TQYIEEAND-ASEVAFLYKGR 298
           T  ++   + A  V  L  G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  121 bits (307), Expect = 7e-32
 Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 15/215 (6%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
               +L++ S  + + E   +LG + +GK+TLLK + GL     GE+ + G   AS+  K
Sbjct: 13  GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72

Query: 162 TAGSKVGYMPQELAMFGELTIKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKL 213
               K+ Y+PQ  +    LT+ E         L  FG     DE I    + +   +L L
Sbjct: 73  ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI----VEEALELLGL 128

Query: 214 PNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-K 271
            +L +RPV  LSGG+++R+    A+  +  +++LDEP   +D   +  + +LL+     K
Sbjct: 129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188

Query: 272 GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSP 305
           G TV+M    +  A   A  +  L  G+I+AQ +P
Sbjct: 189 GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223

Length = 258

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score =  122 bits (308), Expect = 1e-31
 Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 17/213 (7%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           VV+N+ S  + R E F LLG + AGK+T+ + ++G+ +  +G+I VLG  P     + A 
Sbjct: 18  VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG-EPVPSRARLAR 76

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV----LKLPNLER-- 218
             +G +PQ   +  E T++E L  FG  +GM         R+   V    L+   LE   
Sbjct: 77  VAIGVVPQFDNLDPEFTVRENLLVFGRYFGM-------STREIEAVIPSLLEFARLESKA 129

Query: 219 --PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
              V  LSGG KRRL+   A+++ PQL+ILDEP  G+DP  R  +W+ L+  + +G+T++
Sbjct: 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 189

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308
           +TT ++EEA      +  L  GR IA+  P   
Sbjct: 190 LTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score =  121 bits (305), Expect = 7e-31
 Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 17/211 (8%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            V+N  S  V   E F LLG + AGK+T+ + I+G+ +   G+I VLG  P     + A 
Sbjct: 55  AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG-VPVPARARLAR 113

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV----LKLPNLER-- 218
           +++G +PQ   +  E T++E L  FG  +GM         R+   V    L+   LE   
Sbjct: 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-------STREIEAVIPSLLEFARLESKA 166

Query: 219 --PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
              V  LSGG KRRL+   A+++ PQL+ILDEP  G+DP  R  +W+ L+  + +G+T++
Sbjct: 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 226

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
           +TT ++EEA      +  L  GR IA+  P 
Sbjct: 227 LTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257

Length = 340

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  117 bits (296), Expect = 2e-30
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 20/236 (8%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           + + S   +  E   LLG + AGKTTLL+ I  L     G++ +  G            K
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI-DGVDTVRDPSFVRRK 76

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYSHVLKLPNLE 217
           +G +  E  ++  LT +E L +F  + G+          E     Q+ +Y          
Sbjct: 77  IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------- 128

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           R V   S G K++++   A++H P +++LDEP  G+D   R++  D ++    +GR VI 
Sbjct: 129 RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188

Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF-YKITNDDGTS 331
           ++  ++E       V  L+KG ++ + S +   ++  +  L ++F + +  ++GT 
Sbjct: 189 SSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEEGTF 244

Length = 245

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  116 bits (292), Expect = 4e-30
 Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 13/208 (6%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASI 158
           S   L++ SL V+  EF  LLG S  GKTTLL+ I GL+    GEI + G    G P   
Sbjct: 12  SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP-- 69

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE- 217
             +     +G + Q+ A+F  LT+ E + F   + G+ ++    ++R+   ++ L  L  
Sbjct: 70  -ERR---NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN 125

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVI 276
           R    LSGGQ++R++   A+  +P L++LDEP   +D  +R+ + + L+ +    G T I
Sbjct: 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTI 185

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQD 303
             T   EEA   A  +A + +GRI+   
Sbjct: 186 YVTHDQEEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score =  118 bits (297), Expect = 5e-30
 Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 11/207 (5%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           +V++  S  V+R E F LLG + AGKTT L+ ++GL +   G I  L G P     + A 
Sbjct: 21  LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRARHAR 79

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-YSHVLKLPNLER----P 219
            +VG +PQ   +  + T++E L  FG  +G+  +      R     +L+   LE      
Sbjct: 80  QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAK 135

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
           V  LSGG KRRL+   A+++ P +++LDEP  G+DP  R  MW+ L+  + +G+T+++TT
Sbjct: 136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTT 195

Query: 280 QYIEEAND-ASEVAFLYKGRIIAQDSP 305
            ++EEA      +  + +GR IA+ +P
Sbjct: 196 HFMEEAERLCDRLCVIEEGRKIAEGAP 222

Length = 306

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  112 bits (282), Expect = 7e-29
 Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
            + VL + S  VK  EF  ++G + AGK+TLLKAI+GL   + G I V G        + 
Sbjct: 11  GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR- 69

Query: 163 AGSKVGYMPQELAM---FGELTIKETLNFFGMIYGMDESIWLF------QMRKYSHVLKL 213
               +GY+PQ  ++   F  +++++      M  G+     LF         K    L+ 
Sbjct: 70  ----IGYVPQRRSIDRDF-PISVRD---VVLM--GLYGHKGLFRRLSKADKAKVDEALER 119

Query: 214 PNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
             L    +R +  LSGGQ++R+    A++  P L++LDEP  GVDP  ++ +++LL+   
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
            +G T+++ T  +    +  +   L    ++A  
Sbjct: 180 REGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  112 bits (283), Expect = 9e-29
 Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 22/213 (10%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
           +L   SL V   E   LLG + AGKTTLLK I+GL     G I    G   +    H+ A
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHERA 73

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESI-----WLFQMRKYSHVLKLPNLE- 217
            + +GY+P+   +F ELT++E L   G               ++++         P L+ 
Sbjct: 74  RAGIGYVPEGRRIFPELTVEENL-LLGAYARRRAKRKARLERVYEL--------FPRLKE 124

Query: 218 ---RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
              +    LSGG+++ L+   A++ +P+L++LDEP  G+ P + + +++ ++    +G T
Sbjct: 125 RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184

Query: 275 VIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
           +++  Q    A + A     L +GR++ + +  
Sbjct: 185 ILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  112 bits (283), Expect = 2e-28
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 31/235 (13%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           +  VL + SL V++ E   L+G + AGK+TLLKAI+GL   S GEI + G     +  + 
Sbjct: 16  NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP---VRKRR 72

Query: 163 AGSKVGYMPQELAM---FGELTIKETL--------NFFGMIYGMDESIWLFQMRKYSHVL 211
              ++GY+PQ+ ++   F  +T+K+ +         +F  +   D+        K    L
Sbjct: 73  KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDK-------EKVDEAL 124

Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           +   +E    R +  LSGGQK+R+    A+   P L++LDEP  GVD   +K ++DLL+ 
Sbjct: 125 ERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184

Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
              +G+TV+M T  +         V  L    +IA   P+      +   L   F
Sbjct: 185 LRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPE---EVLTEENLEKAF 235

Length = 254

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score =  111 bits (279), Expect = 3e-28
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 22/226 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            +NN SL V +   + LLG + AGK+TLLK I G+   + GEI +  GHP +   +    
Sbjct: 15  AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWT---RKDLH 70

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RPVK 221
           K+G + +   ++  LT +E L     + G+ +S       +   VL + +L     +  K
Sbjct: 71  KIGSLIESPPLYENLTARENLKVHTTLLGLPDS-------RIDEVLNIVDLTNTGKKKAK 123

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
             S G K+RL   IA+L+ P+L+ILDEP  G+DP+  + + +L++ F  +G TVI+++  
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183

Query: 282 IEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITN 326
           + E    A  +  + +G +  Q   +  ++      L  +F ++  
Sbjct: 184 LSEVQQLADHIGIISEGVLGYQGKINKSEN------LEKLFVEVVK 223

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  110 bits (278), Expect = 5e-28
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 15/217 (6%)

Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY 159
                  L + SL +++ E  +L+G + +GK+TLLK + GL   + GE+ V  G   S  
Sbjct: 13  YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV-DGLDTSSE 71

Query: 160 HKTA--GSKVGYMPQE-LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPN 215
                   KVG + Q         T+++ + F     G+       ++ +  +  L+L  
Sbjct: 72  KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE----EIEERVAEALELVG 127

Query: 216 L----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-G 270
           L    +RP   LSGGQK+R++    +   P++++LDEP  G+DP  R+ + +LL+     
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187

Query: 271 KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
            G+T+I+ T  +E   + A  V  L  G+I+A   P 
Sbjct: 188 GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224

Length = 235

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  111 bits (279), Expect = 6e-28
 Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 7/186 (3%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
               VL + +L V++ EF  +LG S  GK+TLL+ I GL+  + GE+ + G         
Sbjct: 14  GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--- 70

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPV 220
             G  +GY+ QE A+   LT+ + +     + G  ++    + ++   ++ L   E +  
Sbjct: 71  --GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP 128

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
             LSGG ++R++   A+  +P+L++LDEP   +D L R+ + D LL+++    +TV++ T
Sbjct: 129 HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188

Query: 280 QYIEEA 285
             ++EA
Sbjct: 189 HDVDEA 194

Length = 248

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  108 bits (272), Expect = 1e-27
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 35/203 (17%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
               VL++ SL ++  E   +LG + AGK+TLLK + GL   S GEI + G   AS+  K
Sbjct: 10  GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
               K+ Y+PQ L + G                               +  L   +RP  
Sbjct: 70  ELARKIAYVPQALELLG-------------------------------LAHL--ADRPFN 96

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQ 280
            LSGG+++R+    A+  +P +++LDEP   +D   +  + +LL+     +G+TV+M   
Sbjct: 97  ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156

Query: 281 YIEEAND-ASEVAFLYKGRIIAQ 302
            +  A   A  V  L  GRI+AQ
Sbjct: 157 DLNLAARYADRVILLKDGRIVAQ 179

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  111 bits (281), Expect = 2e-27
 Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 14/213 (6%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASI 158
               +++ SL +K+ EF  LLG S  GKTTLL+ I G +  S GEI + G      P   
Sbjct: 17  DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-- 74

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
             K     +G + Q  A+F  +T++E + F   +   + ++    ++ +   ++ L    
Sbjct: 75  -EK---RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA 130

Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTV 275
            R    LSGGQ++R++   A++ +P++++LDEP   +D  +R++M  +L ++    G T 
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITF 190

Query: 276 IMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDG 307
           +  T   EEA   +  +A +  GRI    +P+ 
Sbjct: 191 VYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223

Length = 352

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  110 bits (277), Expect = 3e-27
 Identities = 56/203 (27%), Positives = 116/203 (57%), Gaps = 14/203 (6%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            ++N S  V   E F LLG + AGKTT  + I+GL   ++GEI   GG  +    +   +
Sbjct: 17  AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPVKYLS 224
           ++GY+P+E  ++ ++T+++ L +   + GM ++    +++ +   L++   + + +K LS
Sbjct: 73  RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132

Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQ 280
            G ++++ F  A++H+P+L+ILDEP  G+DP    L++  +++L +    +G T+I ++ 
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE----EGATIIFSSH 188

Query: 281 YIEEANDASE-VAFLYKGRIIAQ 302
            +E   +  + +  L KG+ +  
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLY 211

Length = 300

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  108 bits (272), Expect = 3e-27
 Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 11/185 (5%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
             L + SL V+  EF  L+G S  GK+TLL+ I GL+  + GE+ ++ G P +      G
Sbjct: 18  TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVT----GPG 72

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-- 222
              GY+ Q+ A+   LT+ + +     + G+ ++    +  +   ++ L   E    Y  
Sbjct: 73  PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN--AYPH 130

Query: 223 -LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQ 280
            LSGG ++R++   A+   P +++LDEP   +D L R+++ + LL ++   G+TV++ T 
Sbjct: 131 QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190

Query: 281 YIEEA 285
            I+EA
Sbjct: 191 DIDEA 195

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score =  106 bits (268), Expect = 6e-27
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 18/204 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG- 164
           VL++ SL VK+ E +  LG + AGKTT +K I+GL     GEI   G      Y K    
Sbjct: 15  VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG----KSYQKNIEA 70

Query: 165 -SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RP 219
             ++G + +    +  LT +E L     + G+ +            VL +  L+    + 
Sbjct: 71  LRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR---IDE----VLDVVGLKDSAKKK 123

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
           VK  S G K+RL   +A+L  P L+ILDEP  G+DP   K + +L+     +G TV++++
Sbjct: 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183

Query: 280 QYIEEAND-ASEVAFLYKGRIIAQ 302
             + E    A  +  + KG++I +
Sbjct: 184 HLLSEIQKVADRIGIINKGKLIEE 207

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  107 bits (268), Expect = 7e-27
 Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 98  EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
            ++K +   ++  S  VK  E   LLG + AGKTT L+ + GL     G   V  G    
Sbjct: 12  RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV-DGFDVV 70

Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYS 208
                A  ++G++     ++  LT +E L +F  +YG+         +E      M +  
Sbjct: 71  KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL- 129

Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
                  L+R V   S G +++++   A++H P +++LDEP  G+D +  + + + ++  
Sbjct: 130 -------LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL 182

Query: 269 VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301
              G+ ++ +T  ++E       V  L++GR++ 
Sbjct: 183 RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  105 bits (265), Expect = 7e-27
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKT 162
            VLN+ SL ++  E   LLG S +GK+TLL+ I GL+    G I + G            
Sbjct: 14  TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP 73

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
              ++G + Q+ A+F  LT+ E                              N+      
Sbjct: 74  LRRRIGMVFQDFALFPHLTVLE------------------------------NIALG--- 100

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
           LSGGQ++R++   A+   P +++LDEP   +DP+ R+ +  LL  +    G TV++ T  
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160

Query: 282 IEEA-NDASEVAFLYKGR 298
           ++EA   A  V  L  G+
Sbjct: 161 LDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  106 bits (266), Expect = 2e-26
 Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 19/230 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L++ S  V+   F  LLG + AGK+TL   +  L    +G+I V G H      + A +
Sbjct: 16  ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG-HDLRRAPRAALA 74

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYSHVLKLPNL 216
           ++G + Q+  +  +L++++ L +   ++G+          E +    + + +        
Sbjct: 75  RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADD------ 128

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
              V+ L+GG +RR+    A+LH+P L++LDEP VG+DP  R  +   ++      G +V
Sbjct: 129 --KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSV 186

Query: 276 IMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325
           +  T  ++E      +  L++GR++A  +    +       L   F  +T
Sbjct: 187 LWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLALT 236

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  105 bits (265), Expect = 3e-26
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 33/227 (14%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-----GHPAS 157
              VL    L V+R E   ++G S +GK+TLL+ IVGL     GE+ + G        A 
Sbjct: 12  GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71

Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--------- 208
           +Y      ++G + Q  A+F  LT+ E + F            L +  + S         
Sbjct: 72  LYRLRR--RMGMLFQSGALFDSLTVFENVAF-----------PLREHTRLSEEEIREIVL 118

Query: 209 HVLKLPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
             L+   L          LSGG K+R++   A+   P+L++ DEP  G+DP+    + DL
Sbjct: 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178

Query: 265 LQVFVG-KGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGFK 309
           ++      G T IM T  ++ A   ++ +A LY G+I+A+ +P+  +
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  105 bits (264), Expect = 9e-26
 Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 50/233 (21%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK- 161
             V+L+   L V R E   +LG S +GK+TLL+ I+GL    +GEI + G     +  + 
Sbjct: 20  DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79

Query: 162 --TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV-------LK 212
                 ++G + Q+ A+F  LT+ E + F               +R+++ +       L 
Sbjct: 80  LYEIRKRMGVLFQQGALFSSLTVFENVAFP--------------LREHTKLPESLIRELV 125

Query: 213 LPNLE----RPV---KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP------- 255
           L  LE    R      Y   LSGG ++R++   AI   P+L+ LDEP  G+DP       
Sbjct: 126 LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185

Query: 256 -LVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
            L+R    +L       G TVIM T  ++     A  VA L  G++IA+ +P+
Sbjct: 186 ELIR----ELNDAL---GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231

Length = 263

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  104 bits (261), Expect = 1e-25
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 31/221 (14%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI---Y 159
           S   L++ S  +K+ E   L+G S +GK+TL +AI+GL   + G I   G     +    
Sbjct: 17  SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76

Query: 160 HKTAGSKVGYMPQELAMF--------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
            K    ++  + Q+  M         GE  I E L   G +    E+     +     V 
Sbjct: 77  RKIRRKEIQMVFQD-PMSSLNPRMTIGEQ-IAEPLRIHGKLSK-KEARKEAVLLLLVGVG 133

Query: 212 KLPNLERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
               +    +Y   LSGGQ++R++   A+   P+L+I DEP   +D  V+ ++ DLL+  
Sbjct: 134 LPEEVLN--RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191

Query: 269 -VGKGRTVIMTT------QYIEEANDASEVAFLYKGRIIAQ 302
               G T++  T        I     A  VA +Y G+I+ +
Sbjct: 192 QEELGLTLLFITHDLGVVAKI-----ADRVAVMYAGKIVEE 227

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  102 bits (257), Expect = 1e-25
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 40/194 (20%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAG 164
           VL + SL +K  E   ++G S +GK+TLLK ++ L + + GEI  + G     +  ++  
Sbjct: 17  VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLR 75

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLS 224
             + Y+PQ+  +F   TI+E                              N+      LS
Sbjct: 76  KNIAYVPQDPFLFSG-TIRE------------------------------NI------LS 98

Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE 284
           GGQ++R++   A+L  P ++ILDE    +DP     + + L+    KG+TVI+    +  
Sbjct: 99  GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLST 157

Query: 285 ANDASEVAFLYKGR 298
             DA  +  L  GR
Sbjct: 158 IRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  110 bits (276), Expect = 1e-25
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              VL + SL +   E   ++G S +GK+TLLK ++GL    QG I +L G   +     
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI-LLDGVDLNDIDLA 543

Query: 163 A-GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-LER 218
           +   +VGY+ Q+  +F   +I+E +         +E I   Q+   +H  +  LP   + 
Sbjct: 544 SLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAG-AHEFIENLPMGYDT 601

Query: 219 PV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
           PV      LSGGQ++RL+   A+L KP++++LDE    +DP     +   L     +GRT
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRT 660

Query: 275 VIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           VI+    +     A  +  L +G+I+ Q S +
Sbjct: 661 VIIIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692

Length = 709

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score =  102 bits (256), Expect = 4e-25
 Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 22/207 (10%)

Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
           L   + E   LLG + AGKTTLL+AI+GL   ++G + V G  P           +GY+P
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVP 55

Query: 172 Q--ELAMFGELTIKETLNFFGMIYGMDESIWLFQ------MRKYSHVLKLPNL----ERP 219
           Q  E A    +++  T+     + G    I   +             L+   L    +RP
Sbjct: 56  QRHEFAWDFPISVAHTV-----MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP 110

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
           V  LSGGQ++R+    A+  +P +++LDEP  G+D   ++ + +L     G G  ++MTT
Sbjct: 111 VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170

Query: 280 QYIEEANDASEVAFLYKGRIIAQDSPD 306
             + +A    +   L  GR+IA  +P 
Sbjct: 171 HDLAQAMATCDRVVLLNGRVIADGTPQ 197

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  103 bits (260), Expect = 6e-25
 Identities = 63/216 (29%), Positives = 116/216 (53%), Gaps = 15/216 (6%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            +++ +L ++  EF VL+G S +GKTT LK I  L   + GEI + G   + +       
Sbjct: 16  AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPVKY-- 222
           K+GY+ Q++ +F  LT+ E +     + G D+     +++K +  +L L  L+ P +Y  
Sbjct: 76  KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE----RIKKRADELLDLVGLD-PSEYAD 130

Query: 223 -----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
                LSGGQ++R+    A+   P ++++DEP   +DP+ RK++ + ++    + G+T++
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK 311
             T  I+EA   A  +A +  G I+  D+PD   + 
Sbjct: 191 FVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226

Length = 309

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  104 bits (261), Expect = 8e-25
 Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 12/214 (5%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIY 159
            +   L++ SL +K  E   LLG S AGK+TLL+ I GL+    G I  L G        
Sbjct: 13  GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSN 71

Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-- 217
                 KVG++ Q  A+F  +T+ + +  FG+    +         +   +L+L  LE  
Sbjct: 72  LAVRDRKVGFVFQHYALFPHMTVADNIA-FGLKVRKERPSEAEIRARVEELLRLVQLEGL 130

Query: 218 --RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM--WDLLQVFVGKGR 273
             R    LSGGQ++R++   A+  +P++++LDEP   +D  VRK +  W L ++    G 
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRKLHDRLGV 189

Query: 274 TVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
           T +  T   EEA + A  V  L +GRI     PD
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223

Length = 345

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score =  101 bits (255), Expect = 8e-25
 Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
           V+N  SL VK+ E   LLG + AGKTT    IVGL     G+I  L G   +    HK A
Sbjct: 15  VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL-LDGQDITKLPMHKRA 73

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RP 219
              +GY+PQE ++F +LT++E +     I G+ +        K   +L+  ++       
Sbjct: 74  RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKER---EEKLEELLEEFHITHLRKSK 130

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGG++RR+    A+   P+ ++LDEP  GVDP+  + +  ++++   +G  V++T 
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITD 190

Query: 280 QYIEEANDASEVAF-LYKGRIIAQDSPD 306
             + E    ++ A+ +Y+G+++A+ +P+
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPE 218

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 99.5 bits (249), Expect = 2e-24
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 33/177 (18%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTA 163
           +L N S   K  E   ++G S AGK+TLL A+ G +      GE+ +  G P  +  ++ 
Sbjct: 24  LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-NGRP--LDKRSF 80

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
              +GY+PQ+  +   LT++ETL F                       KL       + L
Sbjct: 81  RKIIGYVPQDDILHPTLTVRETLMF---------------------AAKL-------RGL 112

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
           SGG+++R+S  + ++  P L+ LDEP  G+D     ++  LL+     GRT+I +  
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 98.5 bits (246), Expect = 3e-24
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 38/201 (18%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              VL N SL +K+ E   LLG S +GK+TLL+ + G     QGEI  L G P S   K 
Sbjct: 14  EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKA 72

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
             S +  + Q   +F   T++                               NL R    
Sbjct: 73  LSSLISVLNQRPYLFDT-TLRN------------------------------NLGRR--- 98

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQY 281
            SGG+++RL+    +L    +++LDEP VG+DP+  +++  L  +F V K +T+I  T +
Sbjct: 99  FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL--LSLIFEVLKDKTLIWITHH 156

Query: 282 IEEANDASEVAFLYKGRIIAQ 302
           +       ++ FL  G+II Q
Sbjct: 157 LTGIEHMDKILFLENGKIIMQ 177

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 99.5 bits (249), Expect = 6e-24
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 18/212 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHK 161
            L   SL V+R E   LLG + AGKTTLLK I+GL     G I   G    G P    H+
Sbjct: 18  ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP---HE 74

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLE--- 217
            A   + Y+P+   +F  LT++E L          E     Q R    V +L P L+   
Sbjct: 75  RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE----AQERDLEEVYELFPRLKERR 130

Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
            +    LSGG+++ L+   A++ +P+L++LDEP  G+ P + + +++ ++    + G T+
Sbjct: 131 NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190

Query: 276 IMTTQYIEEANDASE-VAFLYKGRIIAQDSPD 306
           ++  Q    A + ++    L  GRI+   +  
Sbjct: 191 LLVEQNARFALEIADRGYVLENGRIVLSGTAA 222

Length = 237

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  104 bits (260), Expect = 7e-24
 Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 25/243 (10%)

Query: 83  KEEEEEADEGKNTEKEELKPSNV---------VLNNCSLVVKRREFFVLLGASSAGKTTL 133
           + E E+  +        ++  NV         VL + S  ++  E   ++G S +GK+TL
Sbjct: 312 EPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTL 371

Query: 134 LKAIVGLKNISQGEIWVLGGHPAS-IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI 192
           +K ++ L + + GEI ++ G     I   +   ++G + Q+  +F   TI+E +   G  
Sbjct: 372 IKLLLRLYDPTSGEI-LIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENI-ALGRP 428

Query: 193 YGMDESIWLFQMRKYSH----VLKLPN-LERPVKY----LSGGQKRRLSFTIAILHKPQL 243
              DE I   +  K ++    +  LP+  +  V      LSGGQ++RL+   A+L  P +
Sbjct: 429 DATDEEIE--EALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486

Query: 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
           +ILDE    +D      + D L+  + KGRT ++    +    +A  +  L  GRI+ + 
Sbjct: 487 LILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545

Query: 304 SPD 306
           + +
Sbjct: 546 THE 548

Length = 567

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 98.6 bits (246), Expect = 1e-23
 Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 17/209 (8%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
             L   S  +++ E    +G + AGKTT LK + GL   + GE+ V G  P         
Sbjct: 35  EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK------- 87

Query: 165 SKVGYMPQELAMFGE-------LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL 216
            +  ++ +   +FG+       L + ++      IY +  + +  ++ + S +L L   L
Sbjct: 88  RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL 147

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTV 275
           + PV+ LS GQ+ R     A+LH+P+++ LDEP +G+D + ++ + + L+ +   +G TV
Sbjct: 148 DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207

Query: 276 IMTTQYIEE-ANDASEVAFLYKGRIIAQD 303
           ++T+ Y+++    A  V  + KGR++   
Sbjct: 208 LLTSHYMKDIEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 96.4 bits (241), Expect = 6e-23
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG--GHPASIYHKTA 163
            L + +L ++  EF  ++G S +GK+TLL  + GL   + GE+ + G      S      
Sbjct: 20  ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79

Query: 164 --GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE---- 217
               K+G++ Q   +  +LT+ E +    +I G        + R    +L++  LE    
Sbjct: 80  LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGR---RKRAAEELLEVLGLEDRLL 136

Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
            +    LSGGQ++R++   A+++ P++I+ DEP   +D    K + +LL+    + G+T+
Sbjct: 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTI 196

Query: 276 IMTTQYIEEANDASEVAFLYKGRI 299
           IM T   E A  A  V  L  G+I
Sbjct: 197 IMVTHDPELAKYADRVIELKDGKI 220

Length = 226

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 98.5 bits (246), Expect = 7e-23
 Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 25/218 (11%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
            S  VL + +L ++  EF VLLG S  GK+TLL+ I GL+  + GEI  + G   +    
Sbjct: 14  GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL-IDGRDVT---D 69

Query: 162 TAGSK--VGYMPQELAMFGELTIKETLNF-FGM-IYGMDESIWLFQMRKYSHVLKLPN-L 216
               K  +  + Q  A++  +T+ E  N  FG+ + G+ ++    ++++ + +L L + L
Sbjct: 70  LPPEKRGIAMVFQNYALYPHMTVYE--NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLL 127

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR-------KRMWDLLQVFV 269
            R    LSGGQ++R++   A++ KP++ +LDEP   +D  +R       K++ + L    
Sbjct: 128 NRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL---- 183

Query: 270 GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
             G T I  T    EA   A  +  +  GRI    +P 
Sbjct: 184 --GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219

Length = 338

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
            +  VL+  SL +   E   +LG S +GK+TLL  + GL +  QGE+ + G   +S+   
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPN-LER 218
               +V    Q+  +F   T++E L         DE +W  L ++     +  LP+ L+ 
Sbjct: 406 EVRRRVSVCAQDAHLFDT-TVRENLR-LARPDATDEELWAALERVGLADWLRALPDGLDT 463

Query: 219 PV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGR 273
            +      LSGG+++RL+   A+L    +++LDEP   +D      +  DLL      GR
Sbjct: 464 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA--ALSGR 521

Query: 274 TVIMTT 279
           TV++ T
Sbjct: 522 TVVLIT 527

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 13/211 (6%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           S   L++ +L V       LLG S +GK+TLL+ I GL+    G I  L G  A+  H  
Sbjct: 12  SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR-LNGQDATRVH-A 69

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----R 218
              K+G++ Q  A+F  LT+++ + F   I    +        +   +L+L  LE    R
Sbjct: 70  RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK---AKIKARVEELLELVQLEGLGDR 126

Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQVFVGKGRTVI 276
               LSGGQ++R++   A+  +PQ+++LDEP   +D  VRK  R W L ++      T +
Sbjct: 127 YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW-LRKLHDEVHVTTV 185

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
             T   EEA + A  +  +  G+I    SPD
Sbjct: 186 FVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 94.2 bits (235), Expect = 2e-22
 Identities = 55/201 (27%), Positives = 105/201 (52%), Gaps = 5/201 (2%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
            +   L++ +L +   EF VLLG S  GKTT L+ I GL+  + G I++ G     +  K
Sbjct: 11  GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV 220
                +  + Q  A++  +T+ + + F   +  + +     ++R+ + +L++ + L+R  
Sbjct: 71  DRD--IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP 128

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTT 279
           K LSGGQ++R++   AI+ +P++ ++DEP   +D  +R +M   L+    + G T I  T
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188

Query: 280 Q-YIEEANDASEVAFLYKGRI 299
              +E    A  +A +  G+I
Sbjct: 189 HDQVEAMTMADRIAVMNDGQI 209

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 20/207 (9%)

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-----ASIYHKTA 163
                +   E   + GAS AGK+TLL+ I GL+    G I VL G         I     
Sbjct: 16  KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPPQ 73

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
             K+G + Q+ A+F  L ++E L F G+    +       + +   +L L +L  R    
Sbjct: 74  QRKIGLVFQQYALFPHLNVRENLAF-GLKRKRNRED-RISVDELLDLLGLDHLLNRYPAQ 131

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-----GRTVIM 277
           LSGG+K+R++   A+  +P+L++LDEP   +D  +R      L   + +        VI 
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALR----LQLLPELKQIKKNLNIPVIF 187

Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQD 303
            T  + EA   A  +  +  GR+    
Sbjct: 188 VTHDLSEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 12/181 (6%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA--- 163
           L++ SL +++ EF  L G S AGKTTLLK + G    S+G++ +  G   +         
Sbjct: 18  LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-AGEDVNRLRGRQLPL 76

Query: 164 -GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
              ++G + Q+  +  + T+ E +     + G  E       R+    L+   LE     
Sbjct: 77  LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREI---QRRVGAALRQVGLEHKADA 133

Query: 223 ----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
               LSGG+++R++   AI++ P L++ DEP   +DP + +R+ DLL+    +G TVI+ 
Sbjct: 134 FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193

Query: 279 T 279
           T
Sbjct: 194 T 194

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 20/221 (9%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHK 161
           V L+  SL +K  EFF LLG S  GKTTLL+ I G +  + GEI +L G        + +
Sbjct: 14  VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHKR 72

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE---- 217
                V  + Q  A+F  LT+ E + F   +  + ++       + +  L L  LE    
Sbjct: 73  ----PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE---IKERVAEALDLVQLEGYAN 125

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVI 276
           R    LSGGQ++R++   A++++P++++LDEP   +D  +RK M  +L ++    G T +
Sbjct: 126 RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFV 185

Query: 277 MTTQYIEEANDAS-EVAFLYKGRIIAQDSPDGFKSKYSMPK 316
             T   EEA   S  +A + KG+I    +P   +  Y  P 
Sbjct: 186 FVTHDQEEALTMSDRIAVMNKGKIQQIGTP---EEIYEEPA 223

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 18/240 (7%)

Query: 81  GKKEEE--EEADEGKNTEKEELKPSNVVL--NNCSLVVKRREFFVLLGASSAGKTTLLKA 136
           GK  +   +  D+GK ++ E LK + +V+  N+ SL V+  E FV++G S +GK+TL++ 
Sbjct: 15  GKNPKRALKLLDQGK-SKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRL 73

Query: 137 IVGLKNISQGEIWVLGGHPASIYHKT----AGSKVGYMPQELAMFGELTIKETLNFFGMI 192
           +  L   ++GEI V G   A +           K+  + Q  A+    T+ E + F   +
Sbjct: 74  LNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV 133

Query: 193 YGMDESIWLFQMRKYSHVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248
            G+ ++    +  +    L+L  LE    +    LSGG ++R+    A+ + P ++++DE
Sbjct: 134 QGVPKAE---REERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE 190

Query: 249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
               +DPL+R  M D L     K  +T++  T  ++EA      +A +  G I+   +P+
Sbjct: 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPE 250

Length = 386

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 96.9 bits (242), Expect = 1e-21
 Identities = 65/256 (25%), Positives = 110/256 (42%), Gaps = 36/256 (14%)

Query: 72  EEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV---------VLNNCSLVVKRREFFVL 122
           E        G+K E        N    E+   N+          L++ +L +K  +   L
Sbjct: 299 ESPVATPGSGEKAEV------ANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTAL 352

Query: 123 LGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAGSKVGYMPQELAMFGELT 181
           +GAS AGK+TLL  ++G    +QGEI V  G     +  +    ++ ++ Q   +F   T
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRV-NGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410

Query: 182 IKETLNFFG------MIYGMDESIWLFQMRKYSHVLKLPN-LERPV----KYLSGGQKRR 230
           I+E +           I    +   L         +  P+ L+  +      LSGGQ +R
Sbjct: 411 IRENILLARPDASDEEIIAALDQAGL------LEFVPKPDGLDTVIGEGGAGLSGGQAQR 464

Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
           L+   A+L    L++LDEP   +D    + +   LQ    K +TV++ T  +E+A DA  
Sbjct: 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDAADADR 523

Query: 291 VAFLYKGRIIAQDSPD 306
           +  L  GR++ Q + +
Sbjct: 524 IVVLDNGRLVEQGTHE 539

Length = 559

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 18/212 (8%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                L N +L + + E   +LG S +GK+TLL+ + G  +  QG I + G   AS+  +
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ 408

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW-LFQMRKYSHVLKLPNLERPV 220
                +  + Q + +F   T+++ L         DE +W   Q      +L       P 
Sbjct: 409 ALRETISVLTQRVHLFSG-TLRDNL-RLANPDASDEELWAALQQVGLEKLL----ESAPD 462

Query: 221 KY----------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                       LSGG++RRL+   A+LH   L +LDEP  G+DP+  +++  LL     
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HA 521

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           +G+T++M T  +        +  L  G+II +
Sbjct: 522 EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553

Length = 573

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 92.3 bits (230), Expect = 3e-21
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 17/212 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
           V+N+ SL V   E   LLG + AGKTT    IVGL     G+I  L     +    HK A
Sbjct: 19  VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL-LDDEDITKLPMHKRA 77

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR--------KYSHVLKLPN 215
              +GY+PQE ++F +LT+++ +     I   D      +            +H+     
Sbjct: 78  RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA 137

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
                  LSGG++RR+    A+   P+ I+LDEP  GVDP+    +  +++    +G  V
Sbjct: 138 YS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGV 192

Query: 276 IMTTQYIEEANDASEVAFL-YKGRIIAQDSPD 306
           ++T   + E  D  + A++   G+++A+ SP+
Sbjct: 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPE 224

Length = 243

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 21/214 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            +NN +L + + EF VL+G S +GKTT +K I  L   + GEI++ G             
Sbjct: 16  AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLKLPNLERPVKY- 222
           K+GY+ Q++ +F  +T++E +     +       W  +  +     +L L  L+ P ++ 
Sbjct: 76  KIGYVIQQIGLFPHMTVEENIALVPKLLK-----WPKEKIRERADELLALVGLD-PAEFA 129

Query: 223 ------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL---LQVFVGKGR 273
                 LSGGQ++R+    A+   P L+++DEP   +DP+ R ++ +    LQ  +GK  
Sbjct: 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK-- 187

Query: 274 TVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
           T++  T  I+EA   A  +A +  G I+   +PD
Sbjct: 188 TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 91.1 bits (227), Expect = 6e-21
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 26/212 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---T 162
            L + SL +   EF  L+G S AGK+TLL+ + GL   + G + + G     +  K    
Sbjct: 16  ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLK-LPNLER- 218
              ++G + Q+  +   L++ E +   G +     S W  LF +       + L  LER 
Sbjct: 76  LRRQIGMIFQQFNLIERLSVLENVL-SGRLGRR--STWRSLFGLFPKEEKQRALAALERV 132

Query: 219 --------PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-LVRKRMWDLLQVFV 269
                       LSGGQ++R++   A++ +P+LI+ DEP   +DP   R+ M  L ++  
Sbjct: 133 GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR 192

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
            +G TVI++   +       ++A  Y  RI+ 
Sbjct: 193 EEGITVIVSLHQV-------DLAREYADRIVG 217

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 90.9 bits (226), Expect = 7e-21
 Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 13/211 (6%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           V L++ SL +   E   LLG S +GKTTLL+ I GL+    G I   GG  A+       
Sbjct: 16  VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL-FGGEDAT--DVPVQ 72

Query: 165 SK-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKLPNLE----R 218
            + VG++ Q  A+F  +T+ + + F   +    E     ++R K   +LKL  L+    R
Sbjct: 73  ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR 132

Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQVFVGKGRTVI 276
               LSGGQ++R++   A+  +P++++LDEP   +D  VRK  R W L ++      T +
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTV 191

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
             T   EEA + A  V  + KGRI    +PD
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 89.1 bits (222), Expect = 2e-20
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 12/204 (5%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
             L   SL +++ EF  ++G S +GK+TLL  + GL   + GE+ V G   + +  K   
Sbjct: 18  QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELA 77

Query: 165 S----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE--- 217
           +     +G++ Q   +  +LT  E +    ++ G+ +        +   +L+   L    
Sbjct: 78  AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER---RERAEELLERVGLGDRL 134

Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTV 275
                 LSGGQ++R++   A+ + P++I+ DEP   +D    K + +LL+    + G T+
Sbjct: 135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTI 194

Query: 276 IMTTQYIEEANDASEVAFLYKGRI 299
           ++ T   E A  A  +  L  G+I
Sbjct: 195 VVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 13/208 (6%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS- 165
           L + S  + + EF  L G S AGK+TLLK I G +  ++G+I V  GH  S         
Sbjct: 18  LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV-NGHDLSRLKGREIPF 76

Query: 166 ---KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
              ++G + Q+  +  + T+ E +     + G          R+ S VL L  L+   + 
Sbjct: 77  LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREI---RRRVSEVLDLVGLKHKARA 133

Query: 223 ----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
               LSGG+++R++   AI+++P +++ DEP   +DP +   +  L +     G TV+M 
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193

Query: 279 TQYIEEANDASE-VAFLYKGRIIAQDSP 305
           T  +E  N     V  L  GR++  +S 
Sbjct: 194 THDLELVNRMRHRVLALEDGRLVRDESR 221

Length = 223

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 32/224 (14%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              VL   SL V++ E  V++G S +GK+TLL+ + GL+    G I V G     +  K 
Sbjct: 14  DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG---EDVGDKK 70

Query: 163 A----GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKLPN 215
                  KVG + Q+  +F  LT+ E +            + + ++ K       L+L  
Sbjct: 71  DILKLRRKVGMVFQQFNLFPHLTVLENV-----TLAP---VKVKKLSKAEAREKALEL-- 120

Query: 216 LERPV-------KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
           LE+ V        Y   LSGGQ++R++   A+   P++++ DEP   +DP +   + D++
Sbjct: 121 LEK-VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179

Query: 266 QVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF 308
           +    +G T+I+ T  +  A + A  V F+ +G+II +  P+ F
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223

Length = 240

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 93.0 bits (232), Expect = 3e-20
 Identities = 72/317 (22%), Positives = 128/317 (40%), Gaps = 52/317 (16%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL----KNISQGEIWVLGGHPASIY 159
              + + S  V+  E   ++G S +GK+TL  A++GL      I+ GE+ +L G      
Sbjct: 22  VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLGL 80

Query: 160 HKTA-----GSKVGYMPQE-LAMFGELT-----IKETLNFFGMIYG---MDESIWLFQMR 205
            +       G ++  + Q+ +     +      I+E L   G          ++ L +  
Sbjct: 81  SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQ- 139

Query: 206 KYSHVLKLPNLERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
                + LP+ ER  +Y   LSGG ++R+   +A+  KP+L+I DEP   +D   + ++ 
Sbjct: 140 -----VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL 194

Query: 263 DLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD----GFKSKYSMPK 316
           DLL+    + G  V+  T  +    + A  V  +YKG I+     +      +  Y+   
Sbjct: 195 DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGL 254

Query: 317 LSDVFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVA--IFNATMGSPPA 374
           L+ V       D      P       EP + +  +      K +     +F    G   A
Sbjct: 255 LAAV---PRLGDEKIIRLPRRGPLRAEPLLSVRNLS-----KRYGSRKGLFVRERGEVKA 306

Query: 375 GLKMGV--VNYELR-GE 388
                V  V+++LR GE
Sbjct: 307 -----VDDVSFDLREGE 318

Length = 539

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 87.7 bits (218), Expect = 4e-20
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 17/189 (8%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           K    +L++ SL +   E   L G + AGKTTL K + GL   S G I +L G P     
Sbjct: 10  KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIK--A 66

Query: 161 KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
           K     +GY+ Q++   +F + +++E L                   +   VLK  +L  
Sbjct: 67  KERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNE-------QAETVLKDLDLYA 118

Query: 219 PVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
             +     LSGGQK+RL+   A+L    L+I DEP  G+D    +R+ +L++    +G+ 
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178

Query: 275 VIMTTQYIE 283
           VI+ T   E
Sbjct: 179 VIVITHDYE 187

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 87.7 bits (218), Expect = 8e-20
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 16/211 (7%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL + +  +K  E   ++G + AGKTTL+  ++   +  +G+I + G     I  K+  S
Sbjct: 18  VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPN-----LERP 219
            +G + Q+  +F   TI E +         +E I   +       ++KLPN     L   
Sbjct: 78  MIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN 136

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTV 275
              LS G+++ L+   A+L  P+++ILDE    +D     L+++ +  L+     KGRT 
Sbjct: 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-----KGRTS 191

Query: 276 IMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           I+    +    +A ++  L  G+II + + D
Sbjct: 192 IIIAHRLSTIKNADKILVLDDGKIIEEGTHD 222

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 87.5 bits (218), Expect = 9e-20
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 35/226 (15%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYH 160
           V L++ S  V+  E   L+G + AGKTTL   I G    + G +   G    G P    H
Sbjct: 14  VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP---H 70

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYS--------H 209
           + A   +G   Q   +F ELT+ E +    M+         + L + R+           
Sbjct: 71  EIARLGIGRTFQIPRLFPELTVLENV----MVAAQARTGSGLLLARARREEREARERAEE 126

Query: 210 VLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
           +L+   L    +RP   LS GQ+RRL    A+   P+L++LDEP  G++P   + + +L+
Sbjct: 127 LLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186

Query: 266 QVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDSPD 306
           +    +G TV++    +E       + A  V  L +GR+IA+ +PD
Sbjct: 187 RELRERGITVLL----VEHDMDVVMSLADRVTVLDQGRVIAEGTPD 228

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 29/211 (13%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAG 164
            LNN SL ++R E   ++G S +GK+TL + + GL+  S G I + G   A     K   
Sbjct: 22  ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81

Query: 165 SKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----- 217
             V  + Q    ++    T+   L+     +G+ +S      ++ + +L    L      
Sbjct: 82  RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS-----QQRIAELLDQVGLPPSFLD 136

Query: 218 -RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR--T 274
            RP + LSGGQ++R++   A++ +P+L+ILDEP   +D  V+ ++ +LL   + K R  T
Sbjct: 137 RRPHE-LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-LKKERGLT 194

Query: 275 VIMTTQ------YIEEANDASEVAFLYKGRI 299
            +  +       ++        +A +  G+I
Sbjct: 195 YLFISHDLALVEHM-----CDRIAVMDNGQI 220

Length = 252

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 15/228 (6%)

Query: 91  EGKNTEKEELKPSNVV--LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI 148
               +++E LK +     +N+ SL V+  E FV++G S +GK+TLL+ I  L   + G++
Sbjct: 22  AKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV 81

Query: 149 WVLGGHPASIYHKTA----GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM 204
            + G   A++  K        K+  + Q  A+    T+ E + F   + G+  +    + 
Sbjct: 82  LIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAE---RE 138

Query: 205 RKYSHVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
            + +  L+L  LE    +    LSGG ++R+    A+   P ++++DE    +DPL+R+ 
Sbjct: 139 ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198

Query: 261 MWDLLQVFVGK-GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
           M D L     +  +T++  T  ++EA      +A +  GR++   +P+
Sbjct: 199 MQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE 246

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-GSKVGYMPQELAMFGELTIKETLNFF 189
           +TLLK I GL   + G I + G     +  +     ++G + Q+  +F ELT++E L F 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 190 GMIYGMDESIWLFQMRKYSHVLKLPNLER--PVKYLSGGQKRRLSFTIAILHKPQLIILD 247
                 D      +  +    + LP+     PV  LSGGQK+R++   A+L KP+L++LD
Sbjct: 61  LRDKEADA-----RAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115

Query: 248 EP 249
           EP
Sbjct: 116 EP 117

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 42/249 (16%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               LN  SL +   +F  ++G++ AGK+TLL AI G    + G+I + G     +  K+
Sbjct: 18  EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG---VDVTKKS 74

Query: 163 AGSKVGYMPQ-----ELAMFGELTIKETLNFFGMIYGMDESIWLF--QMRKYSHVLK--- 212
              +   + +           ELTI+E L           ++     + R  S  L    
Sbjct: 75  VAKRANLLARVFQDPLAGTAPELTIEENL-----------ALAESRGKKRGLSSALNERR 123

Query: 213 ---------------LPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLV 257
                             L   +  LSGGQ++ LS  +A LH P++++LDE    +DP  
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT 183

Query: 258 RKRMWDLLQVFVGKGR-TVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMP 315
            + + +L    V + + T +M T  +E+A D  + +  L+ G+I+  D     K+  ++ 
Sbjct: 184 AEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV-LDVTGEEKASLTVL 242

Query: 316 KLSDVFYKI 324
            L  +F KI
Sbjct: 243 DLIQMFEKI 251

Length = 263

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 24/220 (10%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161
             L N +L +   EF  ++G S AGK+TLL+ I  L   S G I + G     +  K   
Sbjct: 16  QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75

Query: 162 TAGSKVGYMPQELAMFGELTIKET-----LNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
               ++G + Q   +   LT+ E      L +            L +  +      L  L
Sbjct: 76  KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRS-----LLGRFSEEDKERALSAL 130

Query: 217 ER---------PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR-MWDLLQ 266
           ER             LSGGQ++R++   A+  +P LI+ DEP   +DP   K+ M  L +
Sbjct: 131 ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190

Query: 267 VFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
           +    G TVI+    ++ A   A  +  L  G I+   +P
Sbjct: 191 INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 4/186 (2%)

Query: 122  LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
             LG + AGKTT L  + GL   + G + V GG             +G  PQ   +F  LT
Sbjct: 961  FLGHNGAGKTTTLSILTGLLPPTSGTVLV-GGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019

Query: 182  IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK 240
            + E + F+  + G        +M        L +      + LSGG +R+LS  IA +  
Sbjct: 1020 VAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079

Query: 241  PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299
             ++++LDEP  GVDP  R+ +WDLL  +   GRT+IM+T +++EA+     +A + +GR+
Sbjct: 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138

Query: 300  IAQDSP 305
                +P
Sbjct: 1139 YCSGTP 1144

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L + S  V R E   L+G + AGK+TLL+ + G+     G + V G   +S+     G 
Sbjct: 37  ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLGLGGG- 94

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMD--------ESIWLF-QMRKYSHVLKLPNL 216
                        ELT +E +   G + G+         + I  F ++  +        +
Sbjct: 95  ----------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF--------I 136

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
           + PVK  S G K RL+F IA   +P ++++DE     D   +++    L+  + +G+TVI
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI 196

Query: 277 MTT---QYIEEANDASEVAFLYKGRIIA 301
           + +     I+   D      L KG+I  
Sbjct: 197 LVSHDPSSIKRLCDR--ALVLEKGKIRF 222

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L + SL +   E  V+LG S  GKTTLL  I G    S+G I  L G          G+
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIE----GPGA 74

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-LS 224
           + G + Q  A+   L + + + F   + G++++       +   ++ L   E    + LS
Sbjct: 75  ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLS 134

Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIE 283
           GG ++R+    A+  +PQL++LDEP   +D L R++M +LL  ++   G+ V++ T  IE
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194

Query: 284 EA-NDASEVAFLY--KGRIIAQDSPD 306
           EA   A+ +  L    GR++ +   D
Sbjct: 195 EALFLATRLVVLSPGPGRVVERLPLD 220

Length = 259

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 3/195 (1%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
            LGA+ AGK+T LK + GL   + G++ V G  P     +   S    M Q+L ++ +L 
Sbjct: 55  FLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114

Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIAILHK 240
             ++L    +IY + +  +  ++   + +L L   L+ PV+ LS GQ+ R     A+LH 
Sbjct: 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHP 174

Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVIMTTQYIEE-ANDASEVAFLYKGR 298
           P+++ LDEP VG+D   +  + + L+     +  TV++TT   ++ A     V  + +G+
Sbjct: 175 PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQ 234

Query: 299 IIAQDSPDGFKSKYS 313
           ++   +    + ++ 
Sbjct: 235 LVFDGTLAQLQEQFG 249

Length = 325

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 88.0 bits (218), Expect = 5e-19
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 17/216 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI---- 158
               +N+  L + + E FV++G S +GK+T ++ +  L   + G+I++ G +        
Sbjct: 5   GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--HVLKLPNL 216
             +    K+G + Q+ A+F  +TI +  +      G +   W  Q RK     +LKL  L
Sbjct: 65  LREVRRKKIGMVFQQFALFPHMTILQNTS-----LGPELLGWPEQERKEKALELLKLVGL 119

Query: 217 ERPV-KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGK 271
           E    +Y   LSGG ++R+    A+  +P ++++DE    +DPL+R  M D L ++    
Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179

Query: 272 GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
            +T++  T  ++EA      +  +  G I+   +PD
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPD 215

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 84.2 bits (209), Expect = 7e-19
 Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 9/197 (4%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           V+L++ +L +++ + + ++G S +GK+TLL  I  L+    G++++ G     +  K A 
Sbjct: 12  VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71

Query: 165 S----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL---PNLE 217
                K+GY+ Q  A+    T++E L+  G+ Y    S    + +K   + K+     L+
Sbjct: 72  KFRREKLGYLFQNFALIENETVEENLDL-GLKY-KKLSKKEKREKKKEALEKVGLNLKLK 129

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           + +  LSGG+++R++   AIL  P LI+ DEP   +DP  R  + DLL     +G+T+I+
Sbjct: 130 QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIII 189

Query: 278 TTQYIEEANDASEVAFL 294
            T   E A  A  V  L
Sbjct: 190 VTHDPEVAKQADRVIEL 206

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 84.7 bits (210), Expect = 8e-19
 Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 19/208 (9%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-GHPASIYHKTAGSKVGY 169
            L V   E   +LG S AGK+TLL  I G +  + GEI + G  H AS     A   V  
Sbjct: 19  DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS---PPAERPVSM 75

Query: 170 MPQELAMFGELTIKETLNFFGMIYGMDESIWL--FQMRKYSHVLKLPNLE----RPVKYL 223
           + QE  +F  LT+ + +       G+   + L   Q  K         L     R    L
Sbjct: 76  LFQENNLFAHLTVAQNIGL-----GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130

Query: 224 SGGQKRRLSFTIAIL-HKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
           SGGQ++R++    ++  +P L +LDEP   +DP +R  M  L+ Q+   +  T++M T +
Sbjct: 131 SGGQRQRVALARCLVREQPIL-LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189

Query: 282 IEEAND-ASEVAFLYKGRIIAQDSPDGF 308
            E+A   A  V FL  GRI AQ S    
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 86.8 bits (215), Expect = 1e-18
 Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 24/244 (9%)

Query: 81  GKKEEEEEA--DEGKNTEKEELKPSNVVL--NNCSLVVKRREFFVLLGASSAGKTTLLKA 136
           G + +E  A  D+GK T +E L  + +VL  +N SL ++  E  VL+G S +GK+TLL+A
Sbjct: 11  GDQPDEALALLDQGK-TREEILDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRA 69

Query: 137 IVGLKNISQGEIWVL-GGHPASIYHKTAGS-------KVGYMPQELAMFGELTIKETLNF 188
           + GL  +S+G + V  G     + +  A +       +V  + Q+ A+    T++E + F
Sbjct: 70  VNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAF 129

Query: 189 FGMIYGMDESIWLFQMRKYSH-VLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQL 243
              + GM ++    + RK     L+L  L    +R    LSGG ++R+    A   +  +
Sbjct: 130 GLEMQGMPKA----ERRKRVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPI 185

Query: 244 IILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIA 301
           +++DEP   +DPL+R ++ D LL++     +T++  +  ++EA    + +A +  GRII 
Sbjct: 186 LLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQ 245

Query: 302 QDSP 305
             +P
Sbjct: 246 HGTP 249

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 37/223 (16%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGH-----P 155
            ++  S  +K+ E   ++G S +GK+ L KAI+GL       I  GEI +  G       
Sbjct: 20  AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLSLS 78

Query: 156 ASIYHKTAGSKVGYMPQELAM------------FGELTIKETLNFFGMIYGMDESIWLFQ 203
                K  G ++  + Q+  M              E  ++            + +I L +
Sbjct: 79  EKELRKIRGKEIAMIFQD-PMTSLNPVMTIGDQIAE-VLRLHGKGLSKKEAKERAIELLE 136

Query: 204 MRKYSHVLKLPNLERPVK-Y---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK 259
           +      + +P+ ER +K Y   LSGG ++R+   +A+   P+L+I DEP   +D  V+ 
Sbjct: 137 L------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190

Query: 260 RMWDLLQVFV-GKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
           ++ DLL+     KG  +I+ T  +    + ++ VA +Y GRI+
Sbjct: 191 QILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233

Length = 316

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 82.9 bits (206), Expect = 2e-18
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 48/222 (21%)

Query: 97  KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156
               + ++  L + +L V + E   ++G   +GK++LL A++G       E+  L G   
Sbjct: 11  DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG-------ELEKLSG--- 60

Query: 157 SIYHKTAGSKVGYMPQE-LAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLP 214
           S+        + Y+ QE     G  TI+E  N  FG  +  DE        +Y  V+K  
Sbjct: 61  SVSV---PGSIAYVSQEPWIQNG--TIRE--NILFGKPF--DE-------ERYEKVIKAC 104

Query: 215 NLERPVKY---------------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK 259
            LE  ++                LSGGQK+R+S   A+     + +LD+P   VD  V +
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164

Query: 260 RMWDLLQVFVG---KGRTVIMTTQYIEEANDASEVAFLYKGR 298
            +++     +G     +T I+ T  ++    A ++  L  GR
Sbjct: 165 HIFE--NCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 87.8 bits (217), Expect = 3e-18
 Identities = 78/284 (27%), Positives = 130/284 (45%), Gaps = 29/284 (10%)

Query: 44   LWVLLLYELTLECYTLEKEKE---EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEEL 100
            L +L+ +   L  +  E  KE   +E+D+  EE +     G K +    +E         
Sbjct: 1892 LTLLIQHHFFLSRWIAEPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTS 1951

Query: 101  KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
             P+   ++   + V+  E F LLG + AGKTT  K + G   ++ G+  V G    SI  
Sbjct: 1952 SPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG---KSILT 2005

Query: 161  KTAG--SKVGYMPQELAMFGELTIKETLNFFGMIYGM---------DESIWLFQMRKYSH 209
              +     +GY PQ  A+   LT +E L  +  + G+         + SI    +  Y+ 
Sbjct: 2006 NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA- 2064

Query: 210  VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
                   +R     SGG KR+LS  IA++  P L++LDEP  G+DP  R+ +W+ +   +
Sbjct: 2065 -------DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117

Query: 270  GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY 312
             +GR V++T+  +EE     + +A + KG      +    KSK+
Sbjct: 2118 REGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 83.3 bits (207), Expect = 3e-18
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 36/221 (16%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
           +L   SL V + E   +LG +  GKTTLLK ++GL  +  G I  L G   +    H+ A
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHERA 73

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMD----------ESIW-----LFQMRKYS 208
            + + Y+PQ   +F  LT++E L       G+           + I+     L +M    
Sbjct: 74  RAGIAYVPQGREIFPRLTVEENLLT-----GLAALPRRSRKIPDEIYELFPVLKEMLG-- 126

Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
                    R    LSGGQ+++L+   A++ +P+L++LDEP  G+ P + K +  +++  
Sbjct: 127 ---------RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL 177

Query: 269 VG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307
               G  +++  QY++ A + A     + +GR++A  + D 
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 27/213 (12%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              VL    L VK+ E  V++G S +GK+TLL+ I  L+    G I + G     +    
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG---LKLTDDK 68

Query: 163 AG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHV 210
                   KVG + Q+  +F  LT+ E +            I +  M K          +
Sbjct: 69  KNINELRQKVGMVFQQFNLFPHLTVLENI--------TLAPIKVKGMSKAEAEERALELL 120

Query: 211 LKLPNLERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
            K+   ++   Y   LSGGQ++R++   A+   P++++ DEP   +DP +   + D+++ 
Sbjct: 121 EKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180

Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI 299
              +G T+++ T  +  A + A  V F+  GRI
Sbjct: 181 LAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 39/198 (19%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              VL N S  ++  E   ++G S +GK+TL + I+GL   + G +  L G   S +   
Sbjct: 14  EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPN 72

Query: 163 A-GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
             G  VGY+PQ+  +F   +I E +                                   
Sbjct: 73  ELGDHVGYLPQDDELFSG-SIAENI----------------------------------- 96

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LSGGQ++RL    A+   P++++LDEP   +D    + +   +      G T I+    
Sbjct: 97  -LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155

Query: 282 IEEANDASEVAFLYKGRI 299
            E    A  +  L  GR+
Sbjct: 156 PETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 15/183 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNISQGEIWVLGGHPASIYHKT 162
           +LN+ SL V+  +   +LG+S +GKTTLL AI G       + G+I    G P       
Sbjct: 22  ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF-NGQPRKPD--Q 78

Query: 163 AGSKVGYMPQELAMFGELTIKETLNF---FGMIYGMDESIWLFQMRKYSHVLKLPNLERP 219
               V Y+ Q+  +   LT++ETL +     +     ++I   + R    +L+   L R 
Sbjct: 79  FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI--RKKRVEDVLLRDLALTRI 136

Query: 220 ----VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
               VK +SGG++RR+S  + +L  P+++ILDEP  G+D      +   L     + R V
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196

Query: 276 IMT 278
           I+T
Sbjct: 197 ILT 199

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 80.9 bits (200), Expect = 8e-18
 Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162
           VL   +   +R E   LLGA+ AGK+TLL  + GL     G + ++ G P     K    
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLE 65

Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RP 219
              +VG + Q  +  +F    + + + F  +  G+ E+    ++R+    +    L  RP
Sbjct: 66  RRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGG+K+R++   A+  +P +++LDEP  G+DP  R++M  +L+    +G TV+++T
Sbjct: 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184

Query: 280 QYIEEA 285
             ++ A
Sbjct: 185 HDVDLA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 22/217 (10%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAG 164
           L N S V K  E   ++G+S AGKTTL+ A+     K +      +L G P       A 
Sbjct: 41  LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-MRKYSHVLKLPNL------- 216
           S   Y+ Q+      LT++E L F   +  M   +   +   +   VL+   L       
Sbjct: 101 S--AYVQQDDLFIPTLTVREHLMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTR 157

Query: 217 ---ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR 273
                 VK LSGG+++RL+F   +L  P L+  DEP  G+D  +   +  +L+    KG+
Sbjct: 158 IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGK 217

Query: 274 TVIMT----TQYIEEANDASEVAFLYKGRIIAQDSPD 306
           T+I T    +  + E  D  ++  + +GR+    SPD
Sbjct: 218 TIICTIHQPSSELFELFD--KIILMAEGRVAYLGSPD 252

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 19/199 (9%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK--VG 168
            L V   E   ++G S AGK+TLL  I G    + G I V        +   A  +  V 
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS----HTGLAPYQRPVS 73

Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVLKLPN-LERPVKY 222
            + QE  +F  LT+++ +       G+   + L      ++   +  + + + L+R  + 
Sbjct: 74  MLFQENNLFAHLTVRQNIGL-----GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ 128

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
           LSGGQ++R++    ++    +++LDEP   +DPL+R+ M  L+ Q+   + RT++M T +
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188

Query: 282 IEEA-NDASEVAFLYKGRI 299
           + +A   AS++A + +G+I
Sbjct: 189 LSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 24/249 (9%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT- 162
           +  L + +L + + E   ++G S AGK+TLL+++ GL + + GEI   G     +  K  
Sbjct: 17  HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76

Query: 163 --AGSKVGYMPQELAMFGELTIKETL------------NFFGMIYGMDESIWLFQMRKYS 208
                 +G + Q+  +   L++ E +            + FG+    D++  L  + +  
Sbjct: 77  RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALER-- 134

Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-VRKRMWDLLQV 267
            V  L    +    LSGGQ++R++   A++ +P++I+ DEP   +DP   +K M  L  +
Sbjct: 135 -VGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193

Query: 268 FVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITN 326
               G TVI+    ++ A   A  +  L  GRI+     DG  S+ +   L +++    +
Sbjct: 194 NQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF----DGPASELTDEALDEIYGNEIS 249

Query: 327 DDGTSSGPP 335
           +D       
Sbjct: 250 EDINRGVEN 258

Length = 258

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L+  S   ++      LG + AGK+T +K I G      G + V G        K    
Sbjct: 17  ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG-EDVLQNPKEVQR 75

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLS 224
            +GY+P+   ++ ++ ++E L F   IYGM   +   ++ +   ++ L P   + +  LS
Sbjct: 76  NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLS 135

Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDP--LVRKRMWDLLQVFVGKGRTVIMTTQYI 282
            G ++R+    A++H P+++ILDEP  G+DP  LV  R    +   +GK +T+I++T  +
Sbjct: 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN---VIKNIGKDKTIILSTHIM 192

Query: 283 EEAND-ASEVAFLYKGRIIAQDSPD 306
           +E       V  + KG+I+A    D
Sbjct: 193 QEVEAICDRVIIINKGKIVADKKLD 217

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 16/211 (7%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA 163
           V+ + SL V   E   LLG + AGKTT    +VG+     G I ++     S+   H  A
Sbjct: 18  VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLHARA 76

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG-------MDESIWLFQMRKYSHVLKLPNL 216
              +GY+PQE ++F  L++ + L     I          D +  L +     H+    ++
Sbjct: 77  RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD--SM 134

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
            +    LSGG++RR+    A+   P+ I+LDEP  GVDP+    +  +++     G  V+
Sbjct: 135 GQS---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191

Query: 277 MTTQYIEEANDASEVAFLY-KGRIIAQDSPD 306
           +T   + E     E A++  +G +IA  +P 
Sbjct: 192 ITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222

Length = 241

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 18/200 (9%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               L   S  V   E   L+G S AGK+TLL  ++G  + ++G I V G   A     +
Sbjct: 334 RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-LERP 219
              ++ ++PQ   +F   TI E +         D  I     R      V  LP  L+ P
Sbjct: 394 WRDQIAWVPQHPFLF-AGTIAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTP 451

Query: 220 V----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGK 271
           +      LSGGQ +RL+   A L    L++LDEP   +D      V + +  L Q     
Sbjct: 452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ----- 506

Query: 272 GRTVIMTTQYIEEANDASEV 291
           GRTV++ T  +  A  A  +
Sbjct: 507 GRTVLLVTHRLALAALADRI 526

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 24/220 (10%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYH 160
            L + SL + + E   L+G S  GK+TLL+ +  L ++      +GE+ + G     IY 
Sbjct: 15  ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG---KDIYD 71

Query: 161 KTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
                     +VG + Q+   F   +I + + +   ++G+     L +  +    L+   
Sbjct: 72  LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVE--EALRKAA 128

Query: 216 LERPVK------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
           L   VK       LSGGQ++RL    A+ ++P++++LDEP   +DP+   ++ +L+    
Sbjct: 129 LWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL- 187

Query: 270 GKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGF 308
            K  T+++ T  +++A   ++  AFL  GR++     +  
Sbjct: 188 KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 20/209 (9%)

Query: 102 PSNVV-LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           P+    L+  ++ +   EF  L+G S AGK+TLLK I   +  + G I V  G   S   
Sbjct: 11  PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV-NGQDVSDLR 69

Query: 161 KTA----GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
             A      K+G + Q+  +  +  + E + F   + G+         ++    L+L  L
Sbjct: 70  GRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREI---RKRVPAALELVGL 126

Query: 217 ERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
               +     LSGG+++R++   AI++ P ++I DEP   +DP     + +LL+     G
Sbjct: 127 SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIA 301
            TV++ T        A E+    + R+IA
Sbjct: 187 TTVVVATH-------AKELVDTTRHRVIA 208

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 55/210 (26%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 96  EKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155
           E          L N SL V+R ++FV+LG + +GK+ LL+ I G      G+I + G   
Sbjct: 4   ENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63

Query: 156 ASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-QMRKYSHVLKLP 214
            ++        + Y+PQ  A+F  +T+ + +  +G+     +   +  ++ + + +L + 
Sbjct: 64  TNL--PPEKRDISYVPQNYALFPHMTVYKNIA-YGLKKRKVDKKEIERKVLEIAEMLGID 120

Query: 215 N-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-G 272
           + L R  + LSGG+++R++   A++  P++++LDEP   +D   ++++ + L+    + G
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180

Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301
            TV+  T   EEA   A +VA +  G++I 
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L + SL VK+ EF  LLG S  GKTTLL+ I GL+  + G I+  G     I       
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG---RDITRLPPQK 75

Query: 166 K-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-- 222
           +  G + Q  A+F  LT+ + + +     GM  +    ++ +   ++ LP  ER  KY  
Sbjct: 76  RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER--KYPG 133

Query: 223 -LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ 280
            LSGGQ++R++   A+   P L++LDEP   +D  VR+ +  ++ Q+    G T IM T 
Sbjct: 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193

Query: 281 YIEEA-NDASEVAFLYKGRI 299
             EEA + A  +  +  G I
Sbjct: 194 DQEEALSMADRIVVMNHGVI 213

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
             + ++ S  +   E   + G + AGKTTLL+ + GL     GE++   G P     ++ 
Sbjct: 15  RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY-WQGEPIQNVRESY 73

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG--MDESIW----LFQMRKYSHVLKLPNLE 217
              + Y+  +  +  ELT  E L+F+   +G     +IW       +     +       
Sbjct: 74  HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL------- 126

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
            PV  LS GQ+RR++     L    L ILDEP   +D      +  L+     +G  V++
Sbjct: 127 -PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185

Query: 278 TT 279
           TT
Sbjct: 186 TT 187

Length = 209

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 79.5 bits (197), Expect = 5e-17
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 16/216 (7%)

Query: 98  EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
             L P   VL N S  +K  E   ++G + +GK++LL A+  L  +S G I + G   + 
Sbjct: 14  PNLPP---VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISK 70

Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPN 215
           I      S++  +PQ+  +F   TI+  L+ FG     DE +W  L ++     V  LP 
Sbjct: 71  IGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYS--DEELWQALERVGLKEFVESLPG 127

Query: 216 -LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFV 269
            L+  V    + LS GQ++ L    A+L K ++++LDE    VDP     +   ++  F 
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF- 186

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
            K  TV+     ++   D+  +  L KGR++  DSP
Sbjct: 187 -KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 79.2 bits (195), Expect = 1e-16
 Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 20/212 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--KTA 163
            L+  SL + + E   L+GA+ AGKTTLL  + G    + G I V  G   + +   K  
Sbjct: 20  ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTAKIM 78

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL-ERPVK 221
              V  +P+   +F  +T++E L   G     D+    FQ R    V +L P L ER ++
Sbjct: 79  REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ----FQER-IKWVYELFPRLHERRIQ 133

Query: 222 ---YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
               +SGG+++ L+   A++ +P+L++LDEP +G+ P++ ++++D ++    +G T+ + 
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193

Query: 279 TQYIEEANDASEVA----FLYKGRIIAQDSPD 306
            Q    AN A ++A     L  G ++ +D+ D
Sbjct: 194 EQ---NANQALKLADRGYVLENGHVVLEDTGD 222

Length = 237

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 40/217 (18%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VLN+ SL +   +   LLG S +GKTTLL+ I GL++ + G I    G   S  H     
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLH-ARDR 74

Query: 166 KVGYMPQELAMFGELTIKETLNFFGM----------IYGMDESIW-LFQMRKYSHVLKLP 214
           KVG++ Q  A+F  +T+ + + F G+             +   +  L +M + +H+    
Sbjct: 75  KVGFVFQHYALFRHMTVFDNIAF-GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA--- 130

Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQ------ 266
             +R    LSGGQK+R++   A+  +PQ+++LDEP   +D  VRK  R W L Q      
Sbjct: 131 --DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELK 187

Query: 267 ---VFVGK---------GRTVIMTTQYIEEANDASEV 291
              VFV            R V+M+   IE+A    +V
Sbjct: 188 FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224

Length = 353

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 19/217 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L + +L ++  E  V+LG S  GKTTLL  I G      G I  L G P        G+
Sbjct: 16  ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVE----GPGA 70

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLE----RPV 220
           + G + Q   +     +++ + F   + G+++     Q  + +H +LK   LE    R +
Sbjct: 71  ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM----QRLEIAHQMLKKVGLEGAEKRYI 126

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIMTT 279
             LSGGQ++R+    A+   PQL++LDEP   +D   R++M   LL+++   G+ V++ T
Sbjct: 127 WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186

Query: 280 QYIEEAN-DASEVAFLY--KGRIIAQDSPDGFKSKYS 313
             IEEA   A+E+  L    GR++ +   + F  ++ 
Sbjct: 187 HDIEEAVFMATELVLLSPGPGRVVERLPLN-FARRFV 222

Length = 255

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 16/202 (7%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK-VGYMPQELAMFGEL 180
           LLG S  GKTTLL+ + G +    G I +L G    + +     + +  + Q  A+F  +
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDG--EDVTNVPPHLRHINMVFQSYALFPHM 57

Query: 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----RPVKYLSGGQKRRLSFTIA 236
           T++E + F   +  +  +    ++ +    L+L  LE    R    LSGGQ++R++   A
Sbjct: 58  TVEENVAFGLKMRKVPRAEIKPRVLE---ALRLVQLEEFADRKPHQLSGGQQQRVALARA 114

Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASE-VAFL 294
           ++ KP++++LDEP   +D  +R +M   L+    + G T +  T   EEA   S+ +A +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174

Query: 295 YKGRIIAQDSPDGFKSKYSMPK 316
            KG+I    +P   +  Y  P 
Sbjct: 175 RKGKIAQIGTP---EEIYEEPA 193

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 39/223 (17%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PAS 157
              V++N  L +   EF  LLG S  GKTT+L+ I G +    G I +L G      PA 
Sbjct: 26  GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPAE 84

Query: 158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV------- 210
             H      V  + Q  A+F  +T+ E +  FG+           +M+K           
Sbjct: 85  NRH------VNTVFQSYALFPHMTVFENVA-FGL-----------RMQKTPAAEITPRVM 126

Query: 211 --LKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
             L++  LE    R    LSGGQ++R++   A+++KP++++LDE    +D  +RK+M + 
Sbjct: 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE 186

Query: 265 LQVFVGK-GRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSP 305
           L+    K G T +  T   EEA   S+ +  +  GRI    +P
Sbjct: 187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229

Length = 375

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 26/217 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-YHKTAG 164
           +L + S  V   E + ++G + AGKTTLL  + G    S G++ +LG             
Sbjct: 46  ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMR-------KYSHVLKLPNL 216
            ++G +  EL        +       ++  G   SI ++Q             +L+L   
Sbjct: 106 KRIGLVSSELHE----RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161

Query: 217 ----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK- 271
               +RP   LS G++RR+    A++  P+L+ILDEP  G+D + R++   LL       
Sbjct: 162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ---LLNRLEELA 218

Query: 272 ----GRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQD 303
                  ++  T + EE     +    L +G ++AQ 
Sbjct: 219 ASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255

Length = 257

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 9/200 (4%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH------PASIYHKTAGSKVGYMP 171
           E  VLLG S AGK++LL+ +  L+    G + + G H      P+    +     VG + 
Sbjct: 29  ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88

Query: 172 QELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKR 229
           Q+  ++  LT++E L      + G+ +   L +  K    L+L    +R   +LSGGQ++
Sbjct: 89  QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQ 148

Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-A 288
           R++   A++ +PQ+++ DEP   +DP +  ++  +++     G T ++ T  +E A   A
Sbjct: 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA 208

Query: 289 SEVAFLYKGRIIAQDSPDGF 308
           S V ++  G I+ Q     F
Sbjct: 209 SRVVYMENGHIVEQGDASCF 228

Length = 242

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 18/205 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L + S  + + E   ++G + AGK+TLLK I G+   + G++  + G  A +    AG 
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV-KVTGKVAPLIELGAG- 99

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKLPNLERPVKY 222
                        ELT +E +   G+I G+       ++ +   ++ +     +++PVK 
Sbjct: 100 ----------FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDF--IDQPVKT 147

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
            S G   RL+F++A   +P +++LDE     D   +++  + L   V K +T+++ +  +
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207

Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
                  +   +L  G+I  + SP+
Sbjct: 208 GAIKQYCDRAIWLEHGQIRMEGSPE 232

Length = 249

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 79.5 bits (196), Expect = 3e-16
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 27/215 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI---YHKT 162
            +++ SL + + E F LLGAS  GK+TLL+ + G +  + G+I +L G   S    Y + 
Sbjct: 34  AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVPPYQR- 91

Query: 163 AGSKVGYMPQELAMFGELTIKETLNF--------FGMIYG-MDESIWLFQMRKYSHVLKL 213
               +  M Q  A+F  +T+++ + F           I   ++E + L  M++++     
Sbjct: 92  ---PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA----- 143

Query: 214 PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKG 272
              +R    LSGGQ++R++   ++  +P+L++LDEP   +D  +R RM  +++ +    G
Sbjct: 144 ---KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200

Query: 273 RTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
            T +M T   EEA   A  +A + +G+ +    P+
Sbjct: 201 VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPE 235

Length = 377

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 76.8 bits (190), Expect = 6e-16
 Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 40/230 (17%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYH 160
             +N+ SL V+  E   L+G + AGKTTL   I G    S G +   G    G P    H
Sbjct: 18  TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP---H 74

Query: 161 KTAGSKVGYMPQELAMFGELTIKE--------------TLNFFGMIYGMDESIWLFQMRK 206
           + A   +    Q   +F  LT+ E               L          E+       +
Sbjct: 75  RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA-----RER 129

Query: 207 YSHVLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
              +L+   L    +RP   LS GQ+RRL    A+  +P+L++LDEP  G++P   + + 
Sbjct: 130 ARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189

Query: 263 DLL-QVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDSPD 306
           +L+ ++    G T+++    IE         A  +  L  G +IA+ +P+
Sbjct: 190 ELIRELRDRGGVTILL----IEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235

Length = 250

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.6 bits (191), Expect = 6e-16
 Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 22/214 (10%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS- 165
           L+N S  ++   F  L+G + +GK+TL++    L   S G I + G      YH T  + 
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAG------YHITPETG 76

Query: 166 ---------KVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP 214
                    KV  + Q  E  +F E T+ + + F    +G  E     +  K+   + L 
Sbjct: 77  NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLS 135

Query: 215 N--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
              + +    LSGGQ RR++    + ++P+++ LDEP  G+DP  RK M  L + +   G
Sbjct: 136 EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG 195

Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
            TVI+ T  +++  + A +V  L  G++I   SP
Sbjct: 196 HTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229

Length = 287

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            + +  S  +   E   + G + +GKTTLL+ + GL     G + +L G P      +  
Sbjct: 14  ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSIA 72

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQM--RKYSHVLKLPNLERPV 220
             + Y+     +   L++ E L F+   +  DE +   L ++    +          RPV
Sbjct: 73  RGLLYLGHAPGIKTTLSVLENLRFWHADHS-DEQVEEALARVGLNGFED--------RPV 123

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
             LS GQ+RR++    +L    L ILDEP   +D     R  + +     +G  V++TT
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 18/181 (9%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           V+ +  S  +   E  VL G + +GKTTLL+ I GL   + G I  L G           
Sbjct: 16  VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPD--VA 72

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYG-----MDESIWLFQMRKYSHVLKLPNLERP 219
               Y+    AM   LT+ E L F+    G     +  ++    +   + +        P
Sbjct: 73  EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---APL-----AHLP 124

Query: 220 VKYLSGGQKRRLSFT-IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
             YLS GQKRR++   + + ++P + ILDEP   +D        +L++  + +G  VI  
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRP-IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183

Query: 279 T 279
           T
Sbjct: 184 T 184

Length = 207

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 28/211 (13%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           L + S  V       L+G + +GK+TL KA++G   ++ G+I +LG            + 
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG---QPTRQALQKNL 79

Query: 167 VGYMPQ-ELAMFGELTIKETLNFFGMIYG---------------MDESIWLFQMRKYSHV 210
           V Y+PQ E   +    + E +   G  YG               +  ++    M ++ H 
Sbjct: 80  VAYVPQSEEVDWSFPVLVEDVVMMGR-YGHMGWLRRAKKRDRQIVTAALARVDMVEFRH- 137

Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                  R +  LSGGQK+R+    AI  + Q+I+LDEP  GVD     R+  LL+    
Sbjct: 138 -------RQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
           +G+T++++T  +    +  +   + KG ++A
Sbjct: 191 EGKTMLVSTHNLGSVTEFCDYTVMVKGTVLA 221

Length = 272

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            LNN + +  R     ++G + AGK+TL +   G+   + G + + G        +    
Sbjct: 19  ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78

Query: 166 KVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
            VG + Q  +  +F   T+++ + F  +  G+DE     ++    H+L L  L +R   +
Sbjct: 79  FVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHH 137

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQY 281
           LSGG+K+R++    I  +PQ+++LDEP  G+DP   K + D L       G TVI +T  
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197

Query: 282 IE-EANDASEVAFLYKGRIIAQDSPD 306
           ++     A  +  + KGRI+A  + +
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVE 223

Length = 277

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 18/221 (8%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           V+L+N SL +K  E   ++G S +GK+TL K I        G + V G   A        
Sbjct: 16  VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKLPNL------E 217
            +VG + QE  +F   +I++ +        M+  I   ++   +  + +LP        E
Sbjct: 76  RQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE 134

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGR 273
           +    LSGGQ++R++   A++H P+++I DE    +D      + + M D+       GR
Sbjct: 135 QGAG-LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-----AGR 188

Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSM 314
           TVI+    +    +A  +  + KGRI+ Q S D   ++  +
Sbjct: 189 TVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGL 229

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 78.8 bits (195), Expect = 1e-15
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 28/217 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG------HPASIY 159
            L+N SL ++  E   ++G   +GK+TLLK ++GL   ++G + +L G       PA + 
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-LLDGVDIRQIDPADLR 538

Query: 160 HKTAGSKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWL---------FQMRKYSH 209
                  +GY+PQ+  +F G  T+++ +   G  Y  DE I           F +R++  
Sbjct: 539 RN-----IGYVPQDPRLFYG--TLRDNIAL-GAPYADDEEILRAAELAGVTEF-VRRHPD 589

Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
            L +   ER    LSGGQ++ ++   A+L  P +++LDEP   +D    +R  D L+ ++
Sbjct: 590 GLDMQIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL 648

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
             G+T+++ T      +    +  +  GRI+A    D
Sbjct: 649 A-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 15/152 (9%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              VL++ SL +K  +   LLG + AGK+TL++ ++GL    +G I            + 
Sbjct: 16  QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRN 64

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
              ++GY+PQ+L +  + T+  T+N F  +    +   +    K      L  ++ P++ 
Sbjct: 65  GKLRIGYVPQKLYL--DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL--IDAPMQK 120

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD 254
           LSGG+ +R+    A+L++PQL++LDEP  GVD
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152

Length = 251

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 39/230 (16%)

Query: 67  EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN--VVLNNCSLVVKRREFFVLLG 124
           E    + E+      + + ++ AD G   E   L+  +   +L+  +  V+  E  ++ G
Sbjct: 367 EAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITG 426

Query: 125 ASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184
            S AGKT+LL+A+ GL     G I      PA        S + ++PQ      + T++E
Sbjct: 427 ESGAGKTSLLRALAGLWPWGSGRI----SMPA-------DSALLFLPQR-PYLPQGTLRE 474

Query: 185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV----------KYLSGGQKRRLSFT 234
            L      Y        F   +   VL    L              + LSGG+++RL+F 
Sbjct: 475 AL-----CYPNAAPD--FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527

Query: 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ--------VFVGKGRTVI 276
             +LHKP+ + LDE    +D     R++ LL+        + VG   T+ 
Sbjct: 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577

Length = 604

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 33/203 (16%)

Query: 61  KEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV---------VLNNCS 111
           + K  E+ E +  EE   +EGK         GK   K  L+  NV         +L + S
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLS 342

Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
             + R +   ++G + AGK+TLLK + G           LG    ++       K+GY  
Sbjct: 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAG----------ELGPLSGTV-KVGETVKIGYFD 391

Query: 172 QELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----NLERPVKYLSGG 226
           Q    +  + T+ E L         +      +    +++ +      + E+PV  LSGG
Sbjct: 392 QHRDELDPDKTVLEEL--------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGG 443

Query: 227 QKRRLSFTIAILHKPQLIILDEP 249
           +K RL     +L  P L++LDEP
Sbjct: 444 EKARLLLAKLLLQPPNLLLLDEP 466

Length = 530

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 35/218 (16%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKTAG 164
           L   SL +       LLG + AGK+TLL  + G+    +G + V+G   +  +   K   
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE--KWVR 78

Query: 165 SKVGYMPQ------------ELAMFG----ELTIKETLNFFGMIYGMDESIWLFQMRKYS 208
           SKVG + Q            +   FG     L   E          ++E++   +M  + 
Sbjct: 79  SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER------RVEEALKAVRMWDFR 132

Query: 209 HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
                    +P  +LS GQK+R++    +   P +I+LDEP   +DP  ++ + ++L   
Sbjct: 133 D--------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184

Query: 269 VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
             +G+TVI+ T  ++ A + A +V  L +GR++A+   
Sbjct: 185 HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222

Length = 274

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 15/207 (7%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIW----VLGGHPASIYHKTAGSKVGYMPQELAMF 177
           + G S +GKTTL++ I GL    +GEI      L      I+      ++GY+ QE  +F
Sbjct: 28  IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLF 87

Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL----PNLERPVKYLSGGQKRRLSF 233
             L+++  L      YGM  +    +   +  V++L      L R    LSGG+K+R++ 
Sbjct: 88  PHLSVRGNLR-----YGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAI 142

Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT-VIMTTQYIEE-ANDASEV 291
             A+L  P+L+++DEP   +D   +  +   L+    +    ++  +  ++E    A  V
Sbjct: 143 GRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV 202

Query: 292 AFLYKGRIIAQDSPDGFKSKYSMPKLS 318
             L  GR+ A        +   +P L+
Sbjct: 203 VVLEDGRVAAAGPIAEVWASPDLPWLA 229

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 16/216 (7%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
            P   VL + S  +   +   ++G S +GK+T+L+ +    ++S G I + G     +  
Sbjct: 11  DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH----VLKLPNL 216
            +    +G +PQ+  +F + TI   + + G     DE +   +  K +     +++ P+ 
Sbjct: 71  DSLRRAIGVVPQDTVLFND-TIGYNIRY-GRPDATDEEV--IEAAKAAQIHDKIMRFPDG 126

Query: 217 ------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                 ER +K LSGG+K+R++   AIL  P +++LDE    +D    + +   L+  V 
Sbjct: 127 YDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VS 184

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           KGRT I+    +    +A ++  L  GRI+ + + +
Sbjct: 185 KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHE 220

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 17/228 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH---PASIY 159
              VL+N  L + + E  V++G S +GK+TLL+ I  L+ I+ G++ V G     P    
Sbjct: 13  PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72

Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY--GMDESIWLFQMRKYSHVL--KLPN 215
                 + G + Q+  +F  LT  E +  FG +   G  +     +  K +  L  K+  
Sbjct: 73  RLIR-QEAGMVFQQFYLFPHLTALENV-MFGPLRVRGASKE----EAEKQARELLAKVGL 126

Query: 216 LERPVKY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
            ER   Y   LSGGQ++R++   A+  KP+L++ DEP   +DP +R  +  ++Q    +G
Sbjct: 127 AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186

Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD 319
            T+++ T  I  A   AS + F+ KGRI     P          +L +
Sbjct: 187 MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQE 234

Length = 240

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 14/167 (8%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E   + G +  GKTTLL+ + GL     GE+    G   +         + Y+     + 
Sbjct: 27  EALQVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEPHRNILYLGHLPGLK 85

Query: 178 GELTIKETLNFFGMIYGM-DESIW--LFQM--RKYSHVLKLPNLERPVKYLSGGQKRRLS 232
            EL+  E L+F+  I+G    +I   L  +    +           P   LS GQ+RRL+
Sbjct: 86  PELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED--------LPAAQLSAGQQRRLA 137

Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
                L +  L ILDEP   +D      +  LL+  + +G  V++TT
Sbjct: 138 LARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 46/235 (19%)

Query: 96  EKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP 155
           E  E     + L++ +L VK+ EF V+LG + +GK+T+ K +  L   S+G+++V G   
Sbjct: 15  ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74

Query: 156 ASIYH-----KTAG----------------SKVGYMPQELAMFGE---LTIKETLNFFGM 191
           +   +       AG                  V + P+ L +  E     + E+L   GM
Sbjct: 75  SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM 134

Query: 192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV 251
                     ++ R+++     P+L      LSGGQK+R++    +  +P+ II DEP  
Sbjct: 135 ----------YEYRRHA-----PHL------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173

Query: 252 GVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
            +DP  R+ + + ++    K G T+I+ T Y+EEA +A  +  +  G+++ + +P
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228

Length = 280

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 76.8 bits (190), Expect = 5e-15
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 25/198 (12%)

Query: 106 VLNNCSLVVKRRE---FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
            + + S  V+  E      L+GA   G+T L +A+ G +  S GEI  L G P  I    
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGA---GRTELARALFGARPASSGEIL-LDGKPVRIRSPR 329

Query: 163 AGSK--VGYMP---QELAMFGELTIKETLNF-----FGMIYGMDESIWLF---QMRKYSH 209
              K  + Y+P   +   +  +++I E +       F     +D         +  +   
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR 389

Query: 210 VLKLPNLERPVKYLSGG--QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           + K P+ E+P+  LSGG  QK  +     +   P+++ILDEP  G+D   +  ++ L++ 
Sbjct: 390 I-KTPSPEQPIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446

Query: 268 FVGKGRTVIMTTQYIEEA 285
              +G+ ++M +  + E 
Sbjct: 447 LAAEGKAILMISSELPEL 464

Length = 500

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 72.5 bits (179), Expect = 6e-15
 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 38/200 (19%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-- 163
            + + S  V+  E   + G    G+T L +A+ GL+  + GEI  L G P +        
Sbjct: 15  AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAI 73

Query: 164 GSKVGYMP---QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
            + + Y+P   +   +  +L++ E  N                         L +L    
Sbjct: 74  RAGIAYVPEDRKREGLVLDLSVAE--NIA-----------------------LSSL---- 104

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
             LSGG ++++     +   P+++ILDEP  GVD   +  ++ L++     G+ V++ + 
Sbjct: 105 --LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162

Query: 281 YIEEA-NDASEVAFLYKGRI 299
            ++E       +  +Y+GRI
Sbjct: 163 ELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 22/212 (10%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-IYHKT 162
              L+N SL ++  E   ++G   +GK+TLLK + GL   + G + +L G     +    
Sbjct: 17  IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPAD 75

Query: 163 AGSKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWLFQMR--KYSHVLKL----PN 215
               +GY+PQ++ +F G  T+++ +   G     DE I    +R  + + V       PN
Sbjct: 76  LRRNIGYVPQDVTLFYG--TLRDNITL-GAPLADDERI----LRAAELAGVTDFVNKHPN 128

Query: 216 -LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
            L+  +    + LSGGQ++ ++   A+L+ P +++LDEP   +D    +R+ + L+  +G
Sbjct: 129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
             +T+I+ T      +    +  +  GRI+A 
Sbjct: 189 -DKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 22/222 (9%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV--------LGGHPA 156
           V LNN S   ++ + + ++G S +GK+TL+    GL     G I V           H  
Sbjct: 40  VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99

Query: 157 SIYHKTAGSK--------VGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK 206
                +   K        V  + Q  E  +F + TI++ + F  +  G+ +S      + 
Sbjct: 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKF 158

Query: 207 YSHV--LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
           Y +   L    LER    LSGGQKRR++    +  +P+++I DEP  G+DP     M  L
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218

Query: 265 LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
           +       +TV + T  +E   + A EV  + KG+I+   +P
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260

Length = 320

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 25/213 (11%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH- 160
                L   S  ++  E   ++G S +GK+TL + IVG+   + G + + G   A +   
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG---ADLKQW 385

Query: 161 --KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL 216
             +T G  +GY+PQ++ +F   T+ E +  FG      E I         H  +L+LP+ 
Sbjct: 386 DRETFGKHIGYLPQDVELF-PGTVAENIARFGENAD-PEKIIEAAKLAGVHELILRLPD- 442

Query: 217 ERPVKY----------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
                Y          LSGGQ++R++   A+   P+L++LDEP   +D    + + + ++
Sbjct: 443 ----GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498

Query: 267 VFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
               +G TV++ T          ++  L  GRI
Sbjct: 499 ALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 30/214 (14%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL + SL +   E   L+G S +GK+TL+  I    ++  G I + G         +   
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYG-----MDESIWLFQMRKYSH--VLKLPNL-- 216
           ++G + Q++ +F + T+ E +      YG      +E     +    +H  +++LP    
Sbjct: 77  QIGLVSQDVFLFND-TVAENI-----AYGRPGATREEVEEAARA-ANAHEFIMELPEGYD 129

Query: 217 ----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVF 268
               ER VK LSGGQ++R++   A+L  P ++ILDE    +D     LV+  +  L+   
Sbjct: 130 TVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM--- 185

Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
             K RT  +    +    +A  +  L  G+I+ +
Sbjct: 186 --KNRTTFVIAHRLSTIENADRIVVLEDGKIVER 217

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 53/218 (24%), Positives = 109/218 (50%), Gaps = 20/218 (9%)

Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY 159
              +   L++ SL + + E F ++G S AGK+TLL+ I  L+  + G ++V G    ++ 
Sbjct: 15  GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALS 74

Query: 160 HK---TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES-IWLFQMRKYSHVLKLPN 215
                    K+G + Q   +    T+ E + F   + G+ ++ I     ++ + +L+L  
Sbjct: 75  EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI----KQRVAELLELVG 130

Query: 216 LE-----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
           L       P + LSGGQK+R++   A+ + P++++ DE    +DP   + + +LL+    
Sbjct: 131 LSDKADRYPAQ-LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189

Query: 271 K-GRTVIMTT---QYIEEANDASEVAFLYKGRIIAQDS 304
           + G T+++ T   + ++       VA L +GR++ + +
Sbjct: 190 ELGLTIVLITHEMEVVKRI--CDRVAVLDQGRLVEEGT 225

Length = 339

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 74.5 bits (184), Expect = 3e-14
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 21/214 (9%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIY 159
                L+  SL V+  E   LLG + AGK+TL+K + G+     GEI + G     +S  
Sbjct: 19  GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78

Query: 160 H-KTAGSKVGYMPQELAMFGELTIKETLNFF-----GMIYGMDESIWLFQMRKYS----H 209
               AG  +  + QEL++   L++ E  N F        +G+   I    MR+ +     
Sbjct: 79  DALAAG--IATVHQELSLVPNLSVAE--NIFLGREPTRRFGL---IDRKAMRRRARELLA 131

Query: 210 VLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
            L L  + +  V  LS  Q++ +    A+    +++ILDEP   +     +R++DL++  
Sbjct: 132 RLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191

Query: 269 VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA 301
             +G  +I  +  ++E  + A  +  L  GR++ 
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225

Length = 500

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 21/255 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL+   L V+      L+G + AGKTTLL+AI G    + G + V G    ++  + A  
Sbjct: 18  VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77

Query: 166 KVGYMPQELAMFGELTIKETLNF-----FGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
           +V  +PQ+ ++  E  +++ +               E+      R           +RPV
Sbjct: 78  RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
             LSGG+++R+    A+     +++LDEP   +D   + R  +L++  V  G+T +    
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAA-- 195

Query: 281 YIEEANDAS----EVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF---YKITNDDGTSS- 332
            I + + A+    E+  L  GR+ A   P       +   L   F     +  D  T + 
Sbjct: 196 -IHDLDLAARYCDELVLLADGRVRAAGPP---ADVLTADTLRAAFDARTAVGTDPATGAP 251

Query: 333 --GPPAETSKAEEPE 345
              P  +  + E   
Sbjct: 252 TVTPLPDPDRTEAAA 266

Length = 402

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 71.0 bits (175), Expect = 5e-14
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 32/221 (14%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKT 162
           LN+ SL V   E  V++G + AGKTT++  I G     +G +   G    G P    H+ 
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE---HQI 74

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYS------HVLKLP 214
           A + +G   Q+  +F  LT+ E L    +    D+S++  LF             VL+  
Sbjct: 75  ARAGIGRKFQKPTVFENLTVFENLE---LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131

Query: 215 NLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
            L     R    LS GQK+ L   + ++  P+L++LDEP  G+     ++  +LL+  + 
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190

Query: 271 KGRTVI-----MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
              +V+     M  +++     A +V  L++G ++A+ S D
Sbjct: 191 GKHSVVVVEHDM--EFVRSI--ADKVTVLHQGSVLAEGSLD 227

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 69.5 bits (171), Expect = 5e-14
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 44/177 (24%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
             V+L + S  +K  +  ++ G S  GK++L +A+ GL     G I              
Sbjct: 13  GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-----------GMP 61

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
            G  + ++PQ        T++E L     IY  D                          
Sbjct: 62  EGEDLLFLPQR-PYLPLGTLREQL-----IYPWD------------------------DV 91

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
           LSGG+++RL+F   +LHKP+ + LDE    +D     R++ LL+     G TVI   
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVG 145

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 12/183 (6%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKTA 163
           VL + +L +   E  +L G S +GKTTLL  I GL+++ +G + VLG   + AS      
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 164 GSK-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLERPVK 221
             + +GY+ Q   + G LT ++ +    M   +  ++   + R+ +  +L+   L   + 
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNVQ---MALELQPNLSYQEARERARAMLEAVGLGDHLD 136

Query: 222 Y----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVI 276
           Y    LSGGQK+R++   A++H+P+L++ DEP   +D    + + +L+Q     +G T++
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTIL 196

Query: 277 MTT 279
           + T
Sbjct: 197 IVT 199

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.4 bits (175), Expect = 6e-14
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQ 280
            LSGGQK+R++    +  +P++IILDE    +DP  ++++  L+ ++      TVI  T 
Sbjct: 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202

Query: 281 YIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDV----FYKITN 326
            I+EAN A +V  L  G+++AQ SP    SK  M K   +     YK+ N
Sbjct: 203 DIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKN 252

Length = 282

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHKTAGSKVGYMPQELAM 176
           L G S +GKT+L+  I GL    +G I  L G         I+      ++GY+ Q+  +
Sbjct: 29  LFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87

Query: 177 FGELTIKETLNFFGMIYGMDESI-WLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTI 235
           F   T++  L + GM   M      L  +    H+L       P   LSGG+K+R++   
Sbjct: 88  FPHYTVRGNLRY-GMWKSMRAQFDQLVALLGIEHLLD----RYPGT-LSGGEKQRVAIGR 141

Query: 236 AILHKPQLIILDEPCVGVDPLVRKR 260
           A+L  P+L+++DEP   +D L RKR
Sbjct: 142 ALLTAPELLLMDEPLASLD-LPRKR 165

Length = 352

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 68.6 bits (169), Expect = 9e-14
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 52/203 (25%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                L+  SL V+R E   LLG + AGK+TL+K + GL     GEI V  G   S    
Sbjct: 11  GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGKEVSF--- 66

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
                              + ++       M+Y         Q                 
Sbjct: 67  ------------------ASPRDARRAGIAMVY---------Q----------------- 82

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
             LS G+++ +    A+    +L+ILDEP   + P   +R++ +++    +G  VI  + 
Sbjct: 83  --LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140

Query: 281 YIEEAND-ASEVAFLYKGRIIAQ 302
            ++E  + A  V  L  GR++  
Sbjct: 141 RLDEVFEIADRVTVLRDGRVVGT 163

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.3 bits (174), Expect = 9e-14
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 24/247 (9%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI----WVLGGHPASIYHKT 162
           L +  L VK+  +  L+G + +GK+TLL+ + GL   ++G++     V+         K 
Sbjct: 22  LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81

Query: 163 AGSKVGYMPQ--ELAMFGELTIKETL---NFFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
              KVG + Q  E  +F E  +K+       FG+     E I   ++      L     E
Sbjct: 82  VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVG--LADEFWE 139

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           +    LSGGQ RR++    +  +P++++LDEP  G+DP  R  M  L +     G+TV++
Sbjct: 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199

Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSSGPPA 336
            T  +++  D A  V  L KG II+  +P            SDVF ++        G P 
Sbjct: 200 VTHLMDDVADYADYVYLLEKGHIISCGTP------------SDVFQEVDFLKAHELGVPK 247

Query: 337 ETSKAEE 343
            T  A++
Sbjct: 248 ATHFADQ 254

Length = 288

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 30/223 (13%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           +P   +L   SL +   +   L+G+S  GK+T++  +    + + GEI +L G      +
Sbjct: 13  RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLN 71

Query: 161 -KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK------YSHVLKL 213
            +   S++G + QE  +F + TI E +      YG  ++              +  ++ L
Sbjct: 72  LRWLRSQIGLVSQEPVLF-DGTIAENI-----RYGKPDATDEEVEEAAKKANIHDFIMSL 125

Query: 214 PNLERPVKY----------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
           P+      Y          LSGGQK+R++   A+L  P++++LDE    +D    K + +
Sbjct: 126 PD-----GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
            L   + KGRT I+    +    +A  +A L  G+++ Q + D
Sbjct: 181 ALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHD 222

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYHKTAGSKVG 168
            L   + E   ++G S +GK+TLL  I G +    G + ++ G    A+     A   V 
Sbjct: 18  DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAA---PPADRPVS 73

Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-QMRKYSHV----LKLPNLE-RPVKY 222
            + QE  +F  LT+++ +       G+   + L  + R+   V    + L  LE R    
Sbjct: 74  MLFQENNLFAHLTVEQNVGL-----GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE 128

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQY 281
           LSGG+++R++    ++    +++LDEP   +DP +R  M DL L +      TV+M T  
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188

Query: 282 IEEAND-ASEVAFLYKGRIIAQ 302
            E+A   A  V FL  GRI AQ
Sbjct: 189 PEDAKRLAQRVVFLDNGRIAAQ 210

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 72.2 bits (178), Expect = 2e-13
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT--- 162
            +++ S  ++  E   L+G S +GK+TL + + GL   S G I   G        +    
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365

Query: 163 -AGSKVGYMPQELAMFGELT----IKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLPN 215
               ++ +     ++   +T    + E L   G   G      +        + +L+L  
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARV--------AELLELVG 417

Query: 216 LERPV--KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
           L      +Y   LSGGQ++R++   A+  +P+L+ILDEP   +D  V+ ++ +LL+    
Sbjct: 418 LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477

Query: 271 K-GRTVIMTT------QYIEEANDASEVAFLYKGRIIAQDSPD 306
           + G T +  +      +YI     A  VA +Y GRI+ +   +
Sbjct: 478 ELGLTYLFISHDLAVVRYI-----ADRVAVMYDGRIVEEGPTE 515

Length = 539

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 43/176 (24%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            +L N SL +   E   L+G + AGK+TLLK + G      GE+            +  G
Sbjct: 17  PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT-----------RPKG 65

Query: 165 SKVGYMPQELAMFGELTIKETL----------------------NFFGMIYGMDESIWLF 202
            +VGY+ QE  +  E T+ + +                      +    +    E++ L 
Sbjct: 66  LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEAL-LE 124

Query: 203 QMRKYS---------HVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
           ++  ++           L  P+ +RPV  LSGG +RR++   A+L +P L++LDEP
Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180

Length = 530

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 30/173 (17%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG-------HPASIY 159
           ++N SL VK  E F ++G S AGKTTL K I G+   + GE+ V  G        P    
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359

Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWL-----FQMRKYSHVLKLP 214
              A   +G + QE  ++   T+ + L          E+I L         K    LK+ 
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLT---------EAIGLELPDELARMKAVITLKMV 410

Query: 215 N---------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR 258
                     L++    LS G++ R++    ++ +P+++ILDEP   +DP+ +
Sbjct: 411 GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITK 463

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 23/217 (10%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAG 164
           LN+ S  V   E  VL+G + AGKTTL+  I G     +GE+   G    +    H+ A 
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LF------QMRKYSHVLKLPNL 216
           + +G   Q+  +F  LT++E L    +    D+S++  LF      + R+   +L    L
Sbjct: 81  AGIGRKFQKPTVFENLTVRENLE---LALNRDKSVFASLFARLRAEERRRIDELLATIGL 137

Query: 217 E----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
                R    LS GQK+ L   + +   P+L++LDEP  G+     ++  +LL+   GK 
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK- 196

Query: 273 RTVIMT---TQYIEEANDASEVAFLYKGRIIAQDSPD 306
            ++++      ++ E   A +V  L++G ++A+ S D
Sbjct: 197 HSILVVEHDMGFVREI--ADKVTVLHEGSVLAEGSLD 231

Length = 249

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 39/224 (17%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYH 160
           SN V++N +L +K+     LLG S  GKTT+L+ + GL+  ++G+I++ G      SI  
Sbjct: 18  SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS---------HVL 211
           +     +  + Q  A+F  +++ E +      YG+       +M               L
Sbjct: 78  R----DICMVFQSYALFPHMSLGENVG-----YGL-------KMLGVPKEERKQRVKEAL 121

Query: 212 KLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD---- 263
           +L +L    +R V  +SGGQ++R++   A++ KP++++ DEP   +D  +R+ M +    
Sbjct: 122 ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRE 181

Query: 264 LLQVFVGKGRTVIMTTQYIEEANDAS-EVAFLYKGRIIAQDSPD 306
           L Q F     T +  T    EA   S  V  + KG+I+   SP 
Sbjct: 182 LQQQF---NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222

Length = 351

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            +L + S+  +    + ++G S AGK+TL+K I  L + ++G I + G    +I      
Sbjct: 17  EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKY 222
            K+G + Q+  +F E T+K+ + +  M+ G       +    Y  ++ L      R VK 
Sbjct: 77  RKIGMVFQQPHLF-EGTVKDNIEYGPMLKGEKNVDVEY----YLSIVGLNKEYATRDVKN 131

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQY 281
           LSGG+ +R+S    + + P++++LDEP   +DP   + + +L+     K   TVI  T  
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191

Query: 282 IEEANDASE-VAFLYKGRII 300
           +E+A    +  AFL KG ++
Sbjct: 192 MEQAKRIGDYTAFLNKGILV 211

Length = 241

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 17/225 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-------- 154
           ++  L + +L   + E  VLLG S AGK++LL+ +  L+    G + + G H        
Sbjct: 14  AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73

Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKL 213
             +I  +     VG + Q+  ++  LT+++ L      + G+ +   L +  K    L+L
Sbjct: 74  DKAI--RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL 131

Query: 214 PNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
               +R   +LSGGQ++R++   A++ +PQ+++ DEP   +DP +  ++  +++     G
Sbjct: 132 KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG 191

Query: 273 RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316
            T ++ T  +E A   AS V ++  G I+ Q    G  S ++ P+
Sbjct: 192 ITQVIVTHEVEVARKTASRVVYMENGHIVEQ----GDASCFTQPQ 232

Length = 242

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 22/212 (10%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY- 159
           +P  +VL + S  +   E   L+G S +GK+T++  +        G++ +L G P S Y 
Sbjct: 24  RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82

Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNF------FGMI------YGMDESIWLFQMRKY 207
           HK   SKV  + QE  +F   ++++ + +      F  +            I        
Sbjct: 83  HKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD 141

Query: 208 SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           + V +  +       LSGGQK+R++   A++  PQ++ILDE    +D    +++   L  
Sbjct: 142 TEVGEKGSQ------LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195

Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
           +  + RTV++    +     A ++  L  GRI
Sbjct: 196 WP-ERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 69.9 bits (172), Expect = 9e-13
 Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 33/215 (15%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-G 164
           VL   SL +K  E   LLG +  GK+TLL+ +    +  QGEI  L G P + Y + A  
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQPIADYSEAALR 413

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE------- 217
             +  + Q + +F   T+++ L         DE            VL+   LE       
Sbjct: 414 QAISVVSQRVHLFSA-TLRDNL-LLAAPNASDE--------ALIEVLQQVGLEKLLEDDK 463

Query: 218 ----------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
                     R    LSGG++RRL    A+LH   L++LDEP  G+D    +++ +LL  
Sbjct: 464 GLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520

Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
              + +TV+M T  +        +  +  G+II Q
Sbjct: 521 H-AQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554

Length = 574

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 23/183 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-G 164
           +LNN SL V+  EF  + G S  GK+TLLK +  L + + G + +  G   S     A  
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDVSTLKPEAYR 76

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER------ 218
            +V Y  Q  A+FG+ T+++ L F           W  + R+      L  L R      
Sbjct: 77  QQVSYCAQTPALFGD-TVEDNLIF----------PWQIRNRRPDRAAALDLLARFALPDS 125

Query: 219 ----PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
                +  LSGG+K+R++    +   P++++LDE    +D   ++ + +++  +V +   
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185

Query: 275 VIM 277
            ++
Sbjct: 186 AVL 188

Length = 223

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 33/202 (16%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNIS-QGEIWVLGGHPASIYHKTA 163
           L + S VVK  E  ++LG   +G +TLLKA+      N+S +G+I    G P   + +  
Sbjct: 23  LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEFAEKY 81

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
             ++ Y+ +E   F  LT++ETL+F                      L+       V+ +
Sbjct: 82  PGEIIYVSEEDVHFPTLTVRETLDF---------------------ALRCKG-NEFVRGI 119

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
           SGG+++R+S   A++ +  ++  D    G+D      +   ++      +T    + Y  
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY-- 177

Query: 284 EANDA-----SEVAFLYKGRII 300
           +A+D       +V  LY+GR I
Sbjct: 178 QASDEIYDLFDKVLVLYEGRQI 199

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 60/239 (25%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG- 164
           VL   SL     +   ++G+S +GK+T L+ I  L+  S G I V  G    +     G 
Sbjct: 21  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV-NGEEIRLKRDKDGQ 79

Query: 165 -------------SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
                        +++G + Q   ++  +T+ E +                 +    HVL
Sbjct: 80  LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-----------------IEAPVHVL 122

Query: 212 KLPN---LERPVKYL----------------SGGQKRRLSFTIAILHKPQLIILDEPCVG 252
            +     +ER  KYL                SGGQ++R++   A+  +P++++ DEP   
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182

Query: 253 VDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
           +DP     V K M DL +    +GRT+++ T  +  A D +S V FL++G+I  +  P+
Sbjct: 183 LDPELVGEVLKVMQDLAE----EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPE 237

Length = 256

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 15/211 (7%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-- 162
             L   +   ++ E   LLG + AGK+TL     G+   + GE+ ++ G P     K+  
Sbjct: 16  EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSLL 74

Query: 163 -AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-- 217
                VG + Q  +  +F   T++E + F  +  G+ +       ++    LK   +E  
Sbjct: 75  EVRKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEE---VEKRVKEALKAVGMEGF 130

Query: 218 --RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
             +P  +LSGGQK+R++    +  KP++I+LDEP  G+DP+   ++  LL     +G T+
Sbjct: 131 ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITI 190

Query: 276 IMTTQYIEEAND-ASEVAFLYKGRIIAQDSP 305
           I++T  ++     A +V  +  G+II + +P
Sbjct: 191 IISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221

Length = 275

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 17/209 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKT- 162
           +L   +L VK  E   ++G + +GK+TL   I+G     +++GEI +  G    I   + 
Sbjct: 19  ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI-LFDG--EDILELSP 75

Query: 163 ---AGSKVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLF--QMRKYSHVLKLPN- 215
              A + +    Q       +T  + L        G    +  F  ++++ + +L L   
Sbjct: 76  DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135

Query: 216 -LERPV-KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR 273
            LER V +  SGG+K+R      +L +P+L ILDEP  G+D    K + + +     +GR
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195

Query: 274 TVIMTTQYIEEAN--DASEVAFLYKGRII 300
            V++ T Y    +     +V  LY GRI+
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIV 224

Length = 251

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 27/234 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL   SL     +   ++G+S +GK+T L+ I  L+  S+G I V G     +  K    
Sbjct: 20  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79

Query: 166 KVGYMPQELAMFGELT-IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---ERPVK 221
           KV    Q   +   LT + +  N +  +  ++       M     VL L      ER VK
Sbjct: 80  KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-----MEAPIQVLGLSKQEARERAVK 134

Query: 222 Y-----------------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
           Y                 LSGGQ++R+S   A+  +P++++ DEP   +DP +   +  +
Sbjct: 135 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194

Query: 265 LQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSMPKL 317
           +Q    +G+T+++ T  +  A + +S V FL++G+I  + +P+        P+L
Sbjct: 195 MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRL 248

Length = 257

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161
             L + SL V + E F ++G S AGK+TL++ I GL+  + G + V G     +  K   
Sbjct: 19  TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPV 220
            A  ++G + Q   +    T+ E +     I G+ ++       +   +L+L  LE +  
Sbjct: 79  KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA---EIEERVLELLELVGLEDKAD 135

Query: 221 KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
            Y   LSGGQK+R+    A+ + P++++ DE    +DP   + +  LL+    + G T++
Sbjct: 136 AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIV 195

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDS 304
           + T  +E        VA + KG ++ + +
Sbjct: 196 LITHEMEVVKRICDRVAVMEKGEVVEEGT 224

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 34/233 (14%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--QGEIWVLGGHPASIYH 160
           +N VL++ SL ++  E   L+G S  GKTTLL+AI G    +   G I +       + H
Sbjct: 17  ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD---RDLTH 73

Query: 161 KTAGSK-VGYMPQELAMFGELTIKETLNFFGMIYGMD---------ESIWLFQMRKYSHV 210
                + +  + Q  A+F  L +++ + F      M          +++ L  +   +  
Sbjct: 74  APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA- 132

Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
             LP        LSGG ++R++   AI  +P +++LDEP   +D  +R  M + +     
Sbjct: 133 -HLPA------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185

Query: 271 K--GRTVIMTTQYIEEANDASEVAFLYK-GRIIA--------QDSPDGFKSKY 312
           +    T++  T   ++A   ++ A + K GR+ A            DGF +++
Sbjct: 186 ELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEF 238

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 30/224 (13%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVL------------- 151
            L+N S+ + + EF  ++G + +GKTT ++ +  L     G I W+              
Sbjct: 22  ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81

Query: 152 GGHPASIYHKTAGSK----------VGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESI 199
                 +  KT   K          VG + Q  E  +F E TI++ + F  +  G+ +  
Sbjct: 82  KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEE 140

Query: 200 WLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLV 257
              +  KY  ++ L    L+R    LSGGQKRR++    +  +P  ++ DEP  G+DP  
Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200

Query: 258 RKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
            K + ++      +G+T+I+ T  ++   + ++   F   G+II
Sbjct: 201 VKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244

Length = 305

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 30/220 (13%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-----GEIWVLGGHPAS 157
           SN V+    L + +   F L+G S  GK+TLL+    L  +++     GE+ + G    +
Sbjct: 16  SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG---RN 72

Query: 158 IYHKTAGS-----KVGYMPQELAMFGELTIKET----LNFFGMIYGMDESIWLFQMRKYS 208
           IY           +VG + Q    F  LTI +     +   G++    E   L +  +++
Sbjct: 73  IYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE---LDERVEWA 129

Query: 209 HVLKLPNLERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
             LK   L   VK         LSGGQ++RL    A+  KP+++++DEP   +DP+   +
Sbjct: 130 --LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAK 187

Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
           + +LL     +   V++T    + A  +  VAFLY G++I
Sbjct: 188 IEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227

Length = 253

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 25/185 (13%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH---PASIYHKT 162
           +L   S  +       L G++ AGKTTLLK I GL N  +GEI             Y K 
Sbjct: 16  LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75

Query: 163 ---AGSKVGYMPQELAMFGELTIKET----LNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
               G + G  P        LT++E     ++F     G+ E   LF +           
Sbjct: 76  LCFVGHRSGINPY-------LTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------- 120

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           ++ P   LS GQKR+++     + K +L +LDEP V +D L    +   +Q    KG  V
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180

Query: 276 IMTTQ 280
           ++T+ 
Sbjct: 181 LLTSH 185

Length = 200

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 63.6 bits (156), Expect = 3e-12
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 61/146 (41%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
            ++L + SL +   +   L+G + AGK+TLLK I G     +G +              +
Sbjct: 13  KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-----------GS 61

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
             K+GY  Q                                                  L
Sbjct: 62  TVKIGYFEQ--------------------------------------------------L 71

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEP 249
           SGG+K RL+    +L  P L++LDEP
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEP 97

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 39/229 (17%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL+  +  V   E   L+G S +GK+T+L+ ++ L+ I +G+I V G     +YH    +
Sbjct: 15  VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG---EQLYHMPGRN 71

Query: 166 ----------------KVGYMPQELAMFGELTIKETLNFFGM-IYGM------DESIWLF 202
                           K+G + Q   +F   T+ + +    + + GM        ++ L 
Sbjct: 72  GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL 131

Query: 203 QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----VR 258
            M   +          P + LSGGQ++R++   A+  +P++++ DE    +DP     V 
Sbjct: 132 DMVGLADKAD----HMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186

Query: 259 KRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
             +  L         T+++ T  +  A + A  V F  KGRI+ Q  PD
Sbjct: 187 NVIRRLAS---EHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 18/184 (9%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK--VG 168
            L V+R E   +LG S AGK+TLL  I G    + G + + G      +  T  S+  V 
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD----HTTTPPSRRPVS 74

Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWL-----FQMRKYSHVLKLPN-LERPVKY 222
            + QE  +F  LT+ + +       G++  + L      ++   +  + + + L R    
Sbjct: 75  MLFQENNLFSHLTVAQNIGL-----GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ 129

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQY 281
           LSGGQ++R++    ++ +  +++LDEP   +DP +R+ M  L+ QV   +  T++M +  
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189

Query: 282 IEEA 285
           +E+A
Sbjct: 190 LEDA 193

Length = 232

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 66.8 bits (164), Expect = 4e-12
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 22/149 (14%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHKTAGSKVGYMPQELAM 176
           + G S AGKT+L+ AI GL    +G I VL G         I       ++GY+ Q+  +
Sbjct: 29  IFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87

Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKL----PNLERPVKYLSGGQKRRL 231
           F    ++  L      YGM +S     M  ++  ++ L    P L+R    LSGG+K+R+
Sbjct: 88  FPHYKVRGNLR-----YGMAKS-----MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRV 137

Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVRKR 260
           +   A+L  P+L+++DEP   +D L RKR
Sbjct: 138 AIGRALLTAPELLLMDEPLASLD-LPRKR 165

Length = 352

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 20/214 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAG 164
           +LN+ SL +   +   L+G +  GK+TLLK    L     G +  LG  P S+   +   
Sbjct: 17  ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQLA 75

Query: 165 SKVGYMPQELAMFGELTIKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
            ++  +PQ       +T++E         L+ +G +   D +     M + + +  L   
Sbjct: 76  RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ-TRINHLA-- 132

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
           +R +  LSGGQ++R    + +     +++LDEP   +D   +  +  L++    +G+TV+
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192

Query: 277 MTTQYIEEANDASE----VAFLYKGRIIAQDSPD 306
                + + N AS     +  L  G ++AQ +P+
Sbjct: 193 TV---LHDLNQASRYCDHLVVLANGHVMAQGTPE 223

Length = 255

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 10/211 (4%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIYHKT 162
             L+N ++ ++  EF  L+G + +GK+TL++ + GL   + G+I + G       +    
Sbjct: 21  KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80

Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN---LE 217
              KVG + Q  E  +F E TI++ + F  +  G+ E     ++++  +++ L      +
Sbjct: 81  IRKKVGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKD 139

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
           +    LSGGQKRR++    +  +P+++ILDEP  G+DP  R  + + ++    +   T+I
Sbjct: 140 KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTII 199

Query: 277 MTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
           + +  +E+ A  A  +  + KG+   Q +P 
Sbjct: 200 LVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230

Length = 287

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 38/213 (17%)

Query: 65  EEEDEGKEEEEEKEDEGKKEEEEEADEGKNT------EKEELKPSNVVLNNCSLVVKRRE 118
           +  DE  +  +EK+ E  KE  E+    +N       +KE+     V+LNN    VK   
Sbjct: 737 DLTDESDDVNDEKDME--KESGEDIFHWRNLTYEVKIKKEKR----VILNNVDGWVKPGT 790

Query: 119 FFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
              L+GAS AGKTTLL  +        I+ G+  V  G P      +    +GY+ Q+  
Sbjct: 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLV-NGRPLD---SSFQRSIGYVQQQDL 846

Query: 176 MFGELTIKETLNFFG-------------MIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
                T++E+L F               M Y ++E I L +M  Y+  +    +  P + 
Sbjct: 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEY-VEEVIKLLEMESYADAV----VGVPGEG 901

Query: 223 LSGGQKRRLSFTIAILHKPQLII-LDEPCVGVD 254
           L+  Q++RL+  + ++ KP+L++ LDEP  G+D
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 67.1 bits (164), Expect = 7e-12
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 31/246 (12%)

Query: 85  EEEEADEGKNTEKEELKPSNV-------------VLNNCSLVVKRREFFVLLGASSAGKT 131
           + E  ++ K TE   L    V             +L++ SL +K      ++G S +GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514

Query: 132 TLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK-VGYMPQELAMFGELTIKETLNFFG 190
           TL K +VG      GEI +L G       +    + + Y+PQE  +F   +I E L   G
Sbjct: 515 TLAKLLVGFFQARSGEI-LLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENL-LLG 571

Query: 191 MIYGMD-ESIW----LFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTIAILHK 240
               +  + IW    + +++    +  +P      L      +SGGQK+R++   A+L  
Sbjct: 572 AKENVSQDEIWAACEIAEIKD--DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629

Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
            +++ILDE    +D +  K++ + L + + + +T+I     +  A  + ++  L  G+II
Sbjct: 630 SKVLILDESTSNLDTITEKKIVNNL-LNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687

Query: 301 AQDSPD 306
            Q S D
Sbjct: 688 EQGSHD 693

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 51/194 (26%), Positives = 98/194 (50%), Gaps = 10/194 (5%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              +LNN S  ++  EF ++ G S  GK+TLLK +  L + + G +   G   +++  + 
Sbjct: 19  DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN--LER 218
              +V Y  Q   +FG+ T+ + L F   I     D +I+L  + +++    LP+  L +
Sbjct: 79  YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFA----LPDTILTK 133

Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIM 277
            +  LSGG+K+R+S    +   P++++LDE    +D   +  + +++  +V  +   V+ 
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLW 193

Query: 278 TTQYIEEANDASEV 291
            T   +E N A +V
Sbjct: 194 VTHDKDEINHADKV 207

Length = 225

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 34/174 (19%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--QGEIWVLGGHPASIYHKTAG 164
           LNN S  VK      L+G S AGKTTLL  + G K      GEI + G      + ++  
Sbjct: 23  LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS-- 80

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLS 224
              GY+ Q+      LT++E L F         S  L                   + LS
Sbjct: 81  --TGYVEQQDVHSPNLTVREALRF---------SALL-------------------RGLS 110

Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
             Q++RL+  + +  KP ++ LDEP  G+D      +   L+     G+ ++ T
Sbjct: 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 26/219 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L+  SL ++  E   +LG + AGK+TLLKA+ G  +   GE+  L G P + +     +
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-TLNGVPLNSWPPEELA 74

Query: 166 KV-GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ERPV 220
           +    +PQ  ++    T++E +   G I            R  +  L   +L     R  
Sbjct: 75  RHRAVLPQNSSLAFPFTVQEVVQ-MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133

Query: 221 KYLSGGQKRRLSF--TIAILHKPQL----IILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
           + LSGG+++R+     +A L  P      + LDEP   +D   +     L +    +G  
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGA 193

Query: 275 VI-------MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           V+       +  QY      A  +  L++GR+IA  SP 
Sbjct: 194 VLAVLHDLNLAAQY------ADRIVLLHQGRVIASGSPQ 226

Length = 259

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 11/194 (5%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIW----VLGGHPASIYHKTAGSKVGYMPQ--ELA 175
           ++G + +GK+TLL+ + GL   + G +     V+     +   K    KVG + Q  E  
Sbjct: 38  IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97

Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSF 233
           +F E T+++ + F  M +G+ E     + R+   ++ LP   L R    LSGGQ RR++ 
Sbjct: 98  LFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156

Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEE-ANDASEV 291
              +  +P++++LDEP  G+DP  RK M ++  ++   KG T ++ T  +E+ A  A ++
Sbjct: 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI 216

Query: 292 AFLYKGRIIAQDSP 305
             ++KG +  Q +P
Sbjct: 217 VVMHKGTVFLQGTP 230

Length = 290

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 25/222 (11%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-PASIYHK-- 161
            + +N SL V R +   ++G S  GKTTLL+ I G      GEI   G + PA    +  
Sbjct: 21  CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KL------- 213
           T   ++  + Q  A+F ++ +     F  + Y + E   L     +S V+ KL       
Sbjct: 81  TVRKRMSMLFQSGALFTDMNV-----FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG 135

Query: 214 -PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL---VRKRMWDLLQVFV 269
              L  P + LSGG  RR +   AI  +P LI+ DEP VG DP+   V  ++   L   +
Sbjct: 136 AAKL-MPSE-LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKG-RIIAQDSPDGFKS 310
           G   T ++ +  + E    ++ A++    +I+A  S    ++
Sbjct: 194 GV--TCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233

Length = 269

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 35/200 (17%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTA 163
           +L   +L +K+ E   L+G + +GK+TL K I+G     +++GEI    G    I     
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL-FKGE--DITDLP- 70

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY- 222
                  P+E A  G + +                   FQ       +K  +  R V   
Sbjct: 71  -------PEERARLG-IFL------------------AFQYPPEIPGVKNADFLRYVNEG 104

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT--Q 280
            SGG+K+R      +L +P L ILDEP  G+D    + + +++     +G++V++ T  Q
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 281 YIEEANDASEVAFLYKGRII 300
            + +      V  LY GRI+
Sbjct: 165 RLLDYIKPDRVHVLYDGRIV 184

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           L   +L +++ EF  L+G S  GK+TLL  I GL   + G + +L G   +      G  
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQIT----EPGPD 55

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK------YSHVLKLPNL---- 216
              + Q  ++   LT++E +        +D    L  + K          + L  L    
Sbjct: 56  RMVVFQNYSLLPWLTVRENIAL-----AVDRV--LPDLSKSERRAIVEEHIALVGLTEAA 108

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTV 275
           ++    LSGG K+R++   A+  +P++++LDEP   +D L R  + + L+Q++     TV
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168

Query: 276 IMTTQYIEEA 285
           +M T  ++EA
Sbjct: 169 LMVTHDVDEA 178

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 58/225 (25%), Positives = 114/225 (50%), Gaps = 26/225 (11%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
             +++ +   ++ +++ ++G + +GK+TL++ I  L   + G + V      +I HKT  
Sbjct: 21  QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD---ITITHKTKD 77

Query: 165 -------SKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP- 214
                   ++G + Q  E  +F E T++  + F    + M+    L +++ Y+H L +  
Sbjct: 78  KYIRPVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMN----LDEVKNYAHRLLMDL 132

Query: 215 NLERPVKYLS-----GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF- 268
              R V   S     GGQ R+++    +   P +I+LDEP  G+DP  ++++  LL+   
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192

Query: 269 VGKGRTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSP-DGFKSK 311
             + +T+I+ +  + E A  A EV  + +G I++Q SP + FK K
Sbjct: 193 TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237

Length = 286

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 14/205 (6%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           V+  + +L +   EF V +G S  GK+TLL+ I GL++I+ G++++       +     G
Sbjct: 17  VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYL 223
             VG + Q  A++  L++ E ++F   + G  +     ++ + + VL+L + L+R  K L
Sbjct: 77  --VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKAL 134

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-----GRTVIMT 278
           SGGQ++R++    ++ +P + +LDEP   +D  +R +M    ++ + +     GRT+I  
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM----RIEISRLHKRLGRTMIYV 190

Query: 279 TQ-YIEEANDASEVAFLYKGRIIAQ 302
           T   +E    A ++  L  GR +AQ
Sbjct: 191 THDQVEAMTLADKIVVLDAGR-VAQ 214

Length = 369

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 35/215 (16%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---K 161
            +L   S  ++  E   ++G S +GK+TL + +VG+   + G + + G   A +     +
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG---ADLRQWDRE 406

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGM------IY------GMDESIWLFQMRKYSH 209
             G  +GY+PQ++ +F + TI E +  FG       +       G+ E I          
Sbjct: 407 QLGRHIGYLPQDVELF-DGTIAENIARFGEEADPEKVIEAARLAGVHELI---------- 455

Query: 210 VLKLPN-LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
            L+LP   +  +      LSGGQ++R++   A+   P L++LDEP   +D      +   
Sbjct: 456 -LRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514

Query: 265 LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI 299
           +     +G TV++            ++  L  GRI
Sbjct: 515 ILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549

Length = 580

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 26/219 (11%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASIYHK 161
           LN+ +L +   +   L+G S  GK+T L+ +  + ++      +GE+ + G    +IY K
Sbjct: 20  LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG---KNIYDK 76

Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
                    +VG + Q+   F  ++I + + +   I+G+ +   L ++ +++  LK   L
Sbjct: 77  DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWA--LKKAAL 133

Query: 217 ERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
              VK         LSGGQ++RL     I  KP +I++DEP   +DP+   ++ DL+ V 
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VE 192

Query: 269 VGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPD 306
           + K  T+++ T  +++A+  S+  AF   G +I  +  +
Sbjct: 193 LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231

Length = 251

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN----ISQGEIWVLGGHPASIYHKTAG 164
           + +L +KR E   L+G S +GK+    AI+GL       + GEI + G     +  +  G
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--G 61

Query: 165 SKVGYMPQE-LAMFGEL-TIK----ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
             +  + Q     F  L T+     ETL   G +     ++ L  +        LP+ E 
Sbjct: 62  RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG----LPDPEE 117

Query: 219 PVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GR 273
            +K     LSGG  +R+   +A+L +P  +I DEP   +D + + R+  LL+      G 
Sbjct: 118 VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGT 177

Query: 274 TVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
            +++ T  +   A  A EVA +  GRI+ + +  
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVERGTVK 211

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 26/215 (12%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-NIS----QGEIWVLGGH----- 154
             + N ++ + + +   ++G S  GKTTLL++I  +  +I     +G+I+  G       
Sbjct: 17  KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76

Query: 155 -PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213
              + Y K    KVG + Q+   F  ++I + + F   I+G+     L ++ + S  LK 
Sbjct: 77  LDVTEYRK----KVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEES--LKK 129

Query: 214 P--------NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
                     L +P   LSGGQ++RL    A+  +P++I+LDEP   +DP+  +R+  LL
Sbjct: 130 AALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLL 189

Query: 266 QVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
           +        VI+T    +    A  +AF+Y+G +I
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI 224

Length = 250

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 65/266 (24%), Positives = 127/266 (47%), Gaps = 19/266 (7%)

Query: 50  YELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKE-EEEEADEGKNTEKEELKPSNVVLN 108
           Y+       L K+K+ E  +   +++ + D  K++       E +N     +  +  VL+
Sbjct: 40  YQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLH 99

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYHK 161
           + +L +KR +    +G S  GK+T L+ +  L ++      +GEI+ LG +  S  I   
Sbjct: 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
              +++G + Q+   F E++I + + +     G+++   L ++ + S  LK   L   VK
Sbjct: 160 ELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKS--LKSAALWDEVK 216

Query: 222 --------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR 273
                    LSGGQ++RL    AI  +P+++++DEP   +DP+   ++ +L+     K  
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS 276

Query: 274 TVIMTTQYIEEANDASEVAFLYKGRI 299
            +I+T    +    + E  F Y+G I
Sbjct: 277 IIIVTHSMAQAQRISDETVFFYQGWI 302

Length = 329

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 27/214 (12%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA--- 163
           L + S  V   E+  ++G + +GK+TL K + GL     G I V GG   S   +T    
Sbjct: 23  LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV-GGMVLSE--ETVWDV 79

Query: 164 GSKVGYMPQEL-AMFGELTIKETLNFFG----------MIYGMDESIWLFQMRKYSHVLK 212
             +VG + Q     F   T+++ + F G          M+  +D+++    M  +     
Sbjct: 80  RRQVGMVFQNPDNQFVGATVQDDVAF-GLENIGVPREEMVERVDQALRQVGMEDF----- 133

Query: 213 LPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
              L R    LSGGQK+R++    +  +P +IILDE    +DP  R+ + + ++    + 
Sbjct: 134 ---LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190

Query: 273 R-TVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
             TV+  T  ++EA  A  V  + KG I+ + +P
Sbjct: 191 GITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224

Length = 279

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 64.3 bits (156), Expect = 3e-11
 Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 13/210 (6%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKT 162
           + + SL ++  E FV++G S +GK+T+++ +  L   ++G++ + G   A I      + 
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV-- 220
              K+  + Q  A+   +T+ +   F   + G++      +  K    L+   LE     
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEE---RREKALDALRQVGLENYAHS 160

Query: 221 --KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVGKGRTVIM 277
               LSGG ++R+    A+   P ++++DE    +DPL+R  M D L+++     RT++ 
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220

Query: 278 TTQYIEEA-NDASEVAFLYKGRIIAQDSPD 306
            +  ++EA      +A +  G ++   +PD
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPD 250

Length = 400

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 15/170 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L    LVVKR E   L+G S +GK+TLL  + GL + S GE+ ++ G P     + A +
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLV-GQPLHQMDEEARA 83

Query: 166 K-----VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERP 219
           K     VG++ Q   +   L   E +    ++ G        Q R  +  +L+   L + 
Sbjct: 84  KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR----QSRNGAKALLEQLGLGKR 139

Query: 220 VKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
           + +    LSGG+++R++   A   +P ++  DEP   +D     ++ DLL
Sbjct: 140 LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189

Length = 228

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTA- 163
           VL   +L         L+GA+  GK+TL   + GL    +G + W   G P   Y K   
Sbjct: 16  VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW--QGKPLD-YSKRGL 72

Query: 164 ------GSKVGYMPQELAMFGELT--IKETLNFFGMIYG-----MDESIWLFQMRKYSHV 210
                  + V   P++   + ++   I  +L   G+        +DE++ L   + + H 
Sbjct: 73  LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH- 131

Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                  +P++ LS GQK+R++   A++ + + ++LDEP  G+DP  R +M  +++  V 
Sbjct: 132 -------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184

Query: 271 KGRTVIMTTQYIE---EANDASEVAFLYKGRIIAQDSP 305
           +G  VI+++  I+   E +DA  V  L +G+I+   +P
Sbjct: 185 QGNHVIISSHDIDLIYEISDA--VYVLRQGQILTHGAP 220

Length = 271

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 40/222 (18%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL N SL ++  E   LLG S  GK+TL + ++GL+  +QG +    G       +    
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS-FRGQDLY---QLDRK 81

Query: 166 KVGYMPQELAMF-------------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
           +     +++ +                  I E L        +DES    Q  + + +L 
Sbjct: 82  QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---TSLDESE---QKARIAELLD 135

Query: 213 LPNL-----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           +  L     ++  + LSGGQ +R++   A+  KP+LI+LDE    +D +++  + +LL+ 
Sbjct: 136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195

Query: 268 FVGKGRTV-------IMTTQYIEEANDASEVAFLYKGRIIAQ 302
                 T        +   Q          VA + KG+I+ +
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSF-----CQRVAVMDKGQIVEE 232

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 62.2 bits (151), Expect = 4e-11
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 20/175 (11%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM- 176
           E   L G S AGK+TLLK I G++  S G+IW   GH  +   +    +V ++ +++ M 
Sbjct: 29  EMAFLTGHSGAGKSTLLKLICGIERPSAGKIW-FSGHDIT---RLKNREVPFLRRQIGMI 84

Query: 177 ------FGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVL-KLPNLERPVKY---LSG 225
                   + T+ + +    +I G   + I     R+ S  L K+  L++   +   LSG
Sbjct: 85  FQDHHLLMDRTVYDNVAIPLIIAGASGDDI----RRRVSAALDKVGLLDKAKNFPIQLSG 140

Query: 226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
           G+++R+    A+++KP +++ DEP   +D  + + +  L + F   G TV+M T 
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 26/224 (11%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
            N  L N S  +   E+  +LG + +GK+T+ K + GL     GEI + G   +    K 
Sbjct: 21  ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE 80

Query: 163 AGSKVGYMPQ-------------ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
              K+G + Q             ++A FG    K        I  +D+      M  Y  
Sbjct: 81  IRKKIGIIFQNPDNQFIGATVEDDIA-FGLENKKVPPKKMKDI--IDDLAKKVGMEDY-- 135

Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVF 268
                 L++  + LSGGQK+R++    +   P++II DE    +DP  ++ +  ++  + 
Sbjct: 136 ------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLR 189

Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP-DGFKSK 311
             + +T+I  T  ++EA  A +V    +G++IAQ  P +   +K
Sbjct: 190 KTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233

Length = 271

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 64.1 bits (157), Expect = 5e-11
 Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 24/215 (11%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-- 159
           P  V  ++ SL VK+ E   LLG + AGK+TL+K + GL     GEI  + G    I   
Sbjct: 15  PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73

Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ------------MRKY 207
                  +G + Q   +   LT+ E +     I G++ S                   +Y
Sbjct: 74  RDAIRLGIGMVHQHFMLVPTLTVAENI-----ILGLEPSKGGLIDRRQARARIKELSERY 128

Query: 208 SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
              L + + +  V  LS G+++R+    A+    +L+ILDEP   + P     ++++L+ 
Sbjct: 129 G--LPV-DPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185

Query: 268 FVGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIA 301
              +G+T+I  T  ++E    ++ V  L +G+++ 
Sbjct: 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220

Length = 501

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 31/172 (18%)

Query: 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAGS 165
           NN +L V+ +E   L+G + AGKTT+   + G    + G I +L G        H+ A  
Sbjct: 22  NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGHQIARM 80

Query: 166 KVGYMPQELAMFGELTIKETL----------NFFGMIY-----------GMDES-IWLFQ 203
            V    Q + +F E+T+ E L            F  +             +D +  WL +
Sbjct: 81  GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER 140

Query: 204 MRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP 255
           +     +L+  N  R    L+ GQ+RRL     ++ +P++++LDEP  G++P
Sbjct: 141 V----GLLEHAN--RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186

Length = 255

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 28/243 (11%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYH---- 160
           LNN SL  K+ +   ++G + +GK+T+++   GL     G+  ++G +  PA++      
Sbjct: 27  LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLKKIKEV 85

Query: 161 KTAGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--L 216
           K    ++G + Q  E  +F E TI++ + F  +  G ++     ++ +   +++LP   +
Sbjct: 86  KRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV 144

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV----GKG 272
           +R    LSGGQKRR++    I      ++LDEP  G+DP   K   D + +F        
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP---KGEEDFINLFERLNKEYK 201

Query: 273 RTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSM--------PKLSDVFYK 323
           + +IM T  +++    A EV  +++G++I+  SP    S   +        PKL  + YK
Sbjct: 202 KRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYK 261

Query: 324 ITN 326
           + N
Sbjct: 262 LKN 264

Length = 289

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTA 163
           +LN  + +    E   +LG S +GK+TLL A+ G    N   G I      P     K  
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPNLERPV 220
             + G++ Q+  ++  LT++ETL F  ++     + +   +         L L   E  +
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTI 198

Query: 221 ------KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
                 + +SGG+++R+S    +L  P L+ILDEP  G+D     R+   L     KG+T
Sbjct: 199 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKT 258

Query: 275 VI 276
           ++
Sbjct: 259 IV 260

Length = 659

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 13/212 (6%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           VVL++ SL + +     ++G + AGK+TLL  +  L     GEI + G    S   K   
Sbjct: 15  VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74

Query: 165 SKVGYMPQELAMFGELTIKETLNF--F----GMIYGMDESIWLFQMRKYSHVLKLPNLE- 217
            K+  + QE  +   LT+++ + F  F    G +   D  I    + +    L L +L  
Sbjct: 75  KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI----INEAIEYLHLEDLSD 130

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
           R +  LSGGQ++R    + +      ++LDEP   +D     ++  +L+    + G+T++
Sbjct: 131 RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG 307
           +    I  A+  +  +  L  G+++ Q SPD 
Sbjct: 191 VVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222

Length = 252

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 48/226 (21%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           L   ++ +K+ E   +LG + AGK+TL + + G+   S G I +  G P     K     
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRK----- 75

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV------LKLPNLE--- 217
                      G + ++E++   GM++  D    LF    Y  V      LKLP  E   
Sbjct: 76  -----------GLMKLRESV---GMVF-QDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120

Query: 218 ----------------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-VRKR 260
                           +P   LS GQK+R++    ++ +P++++LDEP  G+DP+ V + 
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180

Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK-GRIIAQDSP 305
           M  L+++    G T+I+ T  I+      +  F+ K GR+I Q +P
Sbjct: 181 MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226

Length = 283

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 62.0 bits (150), Expect = 9e-11
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 35/221 (15%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNISQGEIWVLG------GH 154
           +  L+   L +   E   LLG S +GK+TLL+ + GL      +   I +LG      G 
Sbjct: 17  HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76

Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES-IWLFQMRKYSHVLKL 213
            A    K+  +  GY+ Q+  +   L++ E +    +I  +  +  W      ++   K 
Sbjct: 77  LARDIRKSR-ANTGYIFQQFNLVNRLSVLENV----LIGALGSTPFWRTCFSWFTREQKQ 131

Query: 214 PNLE------------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-LVRKR 260
             L+            + V  LSGGQ++R++   A++ + ++I+ DEP   +DP   R  
Sbjct: 132 RALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191

Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
           M  L  +    G TV++T   +       + A  Y  RI+A
Sbjct: 192 MDTLRDINQNDGITVVVTLHQV-------DYALRYCERIVA 225

Length = 262

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 47/248 (18%)

Query: 79  DEGKKEEEEEADEGKNTEKE--ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA 136
            E     E  A   K    +  EL+P  V+L + S+ V R +  V+LGA+ +GK+TLL++
Sbjct: 647 HEATPTSERSAKTPKMKTDDFFELEP-KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705

Query: 137 IVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196
           ++    IS+G +W             A   + Y+PQ+ A     T++  + FF      D
Sbjct: 706 LLSQFEISEGRVW-------------AERSIAYVPQQ-AWIMNATVRGNILFF------D 745

Query: 197 ESIWLFQMRKYSHVLKLPNLERPVKY---------------LSGGQKRRLSFTIAILHKP 241
           E        + +  +++  LE  +                 LSGGQK R+S   A+    
Sbjct: 746 EE----DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR 801

Query: 242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEANDASEVAFLYKGRI 299
            + +LD+P   +D  V +R+  + + F+G   G+T ++ T  +     A  V  L  GR+
Sbjct: 802 DVYLLDDPLSALDAHVGERV--VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859

Query: 300 -IAQDSPD 306
             +  S D
Sbjct: 860 EFSGSSAD 867

Length = 1560

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 59/199 (29%), Positives = 84/199 (42%), Gaps = 49/199 (24%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPAS----I 158
            ++ +  S  +   E   + G + AGKT+LL+ + GL     GE+ W   G P       
Sbjct: 14  RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW--QGEPIRRQRDE 71

Query: 159 YHKTAGSKVGYMPQELAMFG-------ELTIKETLNFFGMIYGM--DESIW--LFQM--R 205
           YH           Q+L   G       ELT  E L F+  ++G   DE++W  L Q+   
Sbjct: 72  YH-----------QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA 120

Query: 206 KYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-----GVDPLVRKR 260
            +  V        PV+ LS GQ+RR++     L +  L ILDEP       GV  L    
Sbjct: 121 GFEDV--------PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA-- 170

Query: 261 MWDLLQVFVGKGRTVIMTT 279
              LL     +G  VI+TT
Sbjct: 171 ---LLAQHAEQGGMVILTT 186

Length = 204

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 21/223 (9%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---GHPASIYHKTA 163
           L N +LV+K+ E+  ++G + +GK+TL   + GL    +G++ V G   G  + +     
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77

Query: 164 GSKVGYMPQELAMFGELTIKETLNF---------FGMIYGMDESIWLFQMRKYSHVLKLP 214
              + +   E    G  T++E L F           +   +D ++    + KY H     
Sbjct: 78  LVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH----- 131

Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT 274
              R  K LSGGQ + ++    +  +P+ +I DE    +DP     + + ++    KG+T
Sbjct: 132 ---RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188

Query: 275 VIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKL 317
           ++  T  +EE +DA  +  + +G+I+ +  P+   S  S+  L
Sbjct: 189 IVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231

Length = 274

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 41/225 (18%)

Query: 81  GKKEEE-----EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLK 135
           G+K E+     ++A      + + L    V  N+ S  +++ E   + G   AG+T L+K
Sbjct: 239 GRKLEDQYPRLDKAPGEVRLKVDNLSGPGV--NDVSFTLRKGEILGVSGLMGAGRTELMK 296

Query: 136 AIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM 195
            + G    + G +  L GH                PQ+    G + I E     G++ GM
Sbjct: 297 VLYGALPRTSGYVT-LDGHEVVTRS----------PQDGLANGIVYISEDRKRDGLVLGM 345

Query: 196 D--ESIWLFQMRKYSHV---------------------LKLPNLERPVKYLSGGQKRRLS 232
              E++ L  +R +S                       +K P++E+ +  LSGG +++++
Sbjct: 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVA 405

Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
               ++ +P+++ILDEP  GVD   +K ++ L+  F  +G ++I+
Sbjct: 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450

Length = 501

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    AI  KP ++++DEPC  +DP+    + +L+Q  + K  T+I+ T  +
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE-LKKNFTIIVVTHSM 208

Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
           ++A   S+ VAF   GRI+  ++  
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQ 233

Length = 251

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-- 163
           +L    LVVKR E   ++G S +GK+TLL  + GL + S GE+  L G P     + A  
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV-RLLGQPLHKLDEDARA 83

Query: 164 ---GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER-- 218
                 VG++ Q   +   LT  E +     + G   +      R  +  L    LE   
Sbjct: 84  ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA----DSRAGAKAL----LEAVG 135

Query: 219 --------PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV- 269
                   P   LSGG+++R++   A   +P ++  DEP   +D     ++ DLL     
Sbjct: 136 LGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIA 301
            +G T+++ T   + A        L  GR++ 
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.3 bits (143), Expect = 6e-10
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 20/211 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKT 162
           +L + ++ +     F ++G S +GK+TLLK +  L  I   +I V G        I+   
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 163 A---GSKVGYMPQELAMFGELTIKETLNFFGMIYG----------MDESIWLFQMRKYSH 209
           A     +VG + Q+   F  L+I + + +    +G          ++E +    + K  +
Sbjct: 85  AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144

Query: 210 VLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
                 L  P   LSGGQ++RL+   A+  KP+++++DEP   +D +  + +  L+    
Sbjct: 145 ----DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200

Query: 270 GKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
            +   VI++    + A  A  VAFLY G ++
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELV 231

Length = 257

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 60.9 bits (148), Expect = 8e-10
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 14/210 (6%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY- 159
           +P   VL   +  +   E   L+G S +GK+T+   +  L   + G++ +L G P   Y 
Sbjct: 491 RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVPLVQYD 549

Query: 160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNLE 217
           H     +V  + QE  +F   +++E + + G+    DE I        +H  +++ PN  
Sbjct: 550 HHYLHRQVALVGQEPVLFSG-SVRENIAY-GLTDTPDEEIMAAAKAANAHDFIMEFPNGY 607

Query: 218 RPV-----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
                     LSGGQK+R++   A++ KP+++ILDE    +D    + + +         
Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR---AS 664

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           RTV++    +     A ++  L KG ++  
Sbjct: 665 RTVLLIAHRLSTVERADQILVLKKGSVVEM 694

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 60.7 bits (148), Expect = 8e-10
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 24/208 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAG 164
           ++ N SL ++  +   L+G S +GK+T+ K + GL     GEI +  G P   I  +   
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI-LFDGIPREEIPREVLA 552

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHVLKLP-NL 216
           + V  + Q++ +F   T+++ L  +      D +I    + +       +  +   P   
Sbjct: 553 NSVAMVDQDIFLFEG-TVRDNLTLW------DPTIPDADLVRACKDAAIHDVITSRPGGY 605

Query: 217 ERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
           +  +      LSGGQ++RL    A++  P ++ILDE    +DP   K + D L+    +G
Sbjct: 606 DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR---RRG 662

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRII 300
            T I+    +    D  E+  L +G+++
Sbjct: 663 CTCIIVAHRLSTIRDCDEIIVLERGKVV 690

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 26/214 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYH 160
           +L N +L + +     L+G S  GK+T ++ +  + ++      +G I++ G     IY 
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG---VDIYD 74

Query: 161 KTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
                     KVG + Q+   F + +I + + +   I+G D+  ++ +  + S  LK   
Sbjct: 75  PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEES--LKAAA 131

Query: 216 LERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           L   VK         LSGGQ++RL     I   P++I++DEPC  +DP+   ++ DL+  
Sbjct: 132 LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191

Query: 268 FVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
            + +  T+++ T  +++A   S+  +F   G II
Sbjct: 192 -LKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII 224

Length = 250

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 42/224 (18%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV----LGGHPASIYHKT 162
           L + +L ++   +   +G + +GK+T+++ + GL   +QG + V    +     +   K 
Sbjct: 23  LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82

Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNF----FGM--------------IYGMDESIWLF 202
              KVG + Q  E  +F E T+ + + F    FG+              + G+ ES  LF
Sbjct: 83  IRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES--LF 139

Query: 203 QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
           +   +               LSGGQ RR++    +  +P++++LDEP  G+DP  RK + 
Sbjct: 140 EKNPFE--------------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185

Query: 263 DLLQVFVGKGRTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSP 305
            L +     G T+++ T  +++ AN A  V  L KG+++    P
Sbjct: 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229

Length = 280

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS- 165
           L + +L V   E   LLG + AGK+TL+K + G+   ++G I +   +   + HK A   
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80

Query: 166 KVGYMPQELAMFGELTIKETLNFFG-----MIYGMDESIWLFQMRKYSHVLKLP-----N 215
            +G + QEL++  ELT+ E L + G      + G++   W   MR  + ++ L      +
Sbjct: 81  GIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWRE-MRVRAAMMLLRVGLKVD 138

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
           L+  V  LS   K+ L     ++   ++II+DEP
Sbjct: 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP 172

Length = 510

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
           P   +LN  S  +   +   ++G S AGK+T+L+ +    +++ G I + G     +  +
Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW----LFQMRKYSHVLKLPNL- 216
           +    +G +PQ+  +F + TI      +G      E +       Q+  +  +  LP   
Sbjct: 334 SLRRAIGIVPQDTVLFND-TIAY-NIKYGRPDATAEEVGAAAEAAQIHDF--IQSLPEGY 389

Query: 217 -----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
                ER +K LSGG+K+R++    IL  P ++ILDE    +D    + +   L+  V  
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSA 447

Query: 272 GRTVIMTTQYIEEANDASEVAFLYKGRII 300
           GRT ++    +    DA E+  L  GRI+
Sbjct: 448 GRTTLVIAHRLSTIIDADEIIVLDNGRIV 476

Length = 497

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV----------LGG 153
             VL+   L VK  E   ++G S +GKTTLL+ I  L+    G I V          L  
Sbjct: 16  QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75

Query: 154 HPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG--MIYGMDESIWLFQMRKYSHVL 211
               I  +     VG++ Q   +F   T+ E +   G  ++ G  +     + R+    +
Sbjct: 76  QKGLI--RQLRQHVGFVFQNFNLFPHRTVLENI-IEGPVIVKGEPKEEATARARELLAKV 132

Query: 212 KLPNLERPV-KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
            L   E    + LSGGQ++R++   A+  +P++I+ DEP   +DP +   + + ++    
Sbjct: 133 GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ 192

Query: 271 KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ 302
           + RT+++ T  +  A D A    F+ +GRI+ Q
Sbjct: 193 EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225

Length = 250

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL N SL V   E   L G S AGK+TLLK++        G I V   H  +       S
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR--HEGAWVDLAQAS 80

Query: 166 K----------VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
                      +GY+ Q L +   ++  E +    +  G+       + R+    L +P 
Sbjct: 81  PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP- 139

Query: 216 LER----PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
            ER    P    SGG+++R++     +    +++LDEP   +D   R+ + +L+     +
Sbjct: 140 -ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198

Query: 272 GRTVI 276
           G  +I
Sbjct: 199 GAALI 203

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 20/214 (9%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           +P    L+  +L V+  E   L+G S AGK+TL + ++   +   G I + G     +  
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL-- 216
               +++  +PQ+  +F   ++ E + + G     DE +       ++H  +  LP    
Sbjct: 410 AELRARMALVPQDPVLFAA-SVMENIRY-GRPDATDEEVEAAARAAHAHEFISALPEGYD 467

Query: 217 ----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVF 268
               ER V  LSGGQ++R++   AIL    +++LDE    +D     LV++ +  L+   
Sbjct: 468 TYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--- 523

Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
             KGRT ++    +     A  +  + +GRI+AQ
Sbjct: 524 --KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 18/210 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG---EIWVLGGHPASIYHKT 162
           VL N ++    R+   ++G S  GK+TLL+A+  + +I  G   E  VL  +  +IY   
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN-ENIYSPN 77

Query: 163 AG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKL--- 213
                   +VG + Q+   F + +I + + F   + G      L ++ + S     L   
Sbjct: 78  LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE 136

Query: 214 --PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
              NL +    LSGGQ++RL     +  +P++I++DEPC  +DP+   R+ +L+Q  + +
Sbjct: 137 VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE-LKQ 195

Query: 272 GRTVIMTTQYIEEANDASE-VAFLYKGRII 300
             T+ + T  +++A  AS+   FL  G ++
Sbjct: 196 NYTIAIVTHNMQQAARASDWTGFLLTGDLV 225

Length = 251

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 50/203 (24%), Positives = 99/203 (48%), Gaps = 12/203 (5%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL   SL + + E   ++G+S +GK+TLL  + GL N + GE+   G   + +       
Sbjct: 20  VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79

Query: 166 ----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK 221
               K+G++ Q   +  + T  E +    +I     S+   + R Y  +L+   LE  + 
Sbjct: 80  LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK--SVKEAKERAYE-MLEKVGLEHRIN 136

Query: 222 Y----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVI 276
           +    LSGG+++R++   A++++P L++ DEP   +D    K ++DL+ ++      + +
Sbjct: 137 HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFL 196

Query: 277 MTTQYIEEANDASEVAFLYKGRI 299
           + T  +E A     V  +  G++
Sbjct: 197 VVTHDLELAKKLDRVLEMKDGQL 219

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 58.4 bits (142), Expect = 4e-09
 Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 47/164 (28%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           +LG + AGK+TLL+ + G+     GE       PA       G KVGY+PQE  +    T
Sbjct: 36  VLGLNGAGKSTLLRIMAGVDKEFNGEAR-----PA------PGIKVGYLPQEPQLDPTKT 84

Query: 182 IKE-----------TLNFFGMIYG--------MDESI---------------WLF--QMR 205
           ++E            L+ F  I          MD  +               W    ++ 
Sbjct: 85  VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLE 144

Query: 206 KYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                L+ P  +  V  LSGG++RR++    +L KP +++LDEP
Sbjct: 145 IAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L+ P   LSGGQ++RL    A+  +P++++ DEP   +DP    ++  L  + + K  T+
Sbjct: 140 LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF-LELKKDMTI 198

Query: 276 IMTTQYIEEANDASE-VAFLYKGRII 300
           ++ T + ++A   S+ VAFLYKG+I+
Sbjct: 199 VLVTHFPQQAARISDYVAFLYKGQIV 224

Length = 250

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 30/222 (13%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA------------IVGLKNISQGEIWV 150
               L + ++ + +     L+G S  GK+TLL+             I G    +   I  
Sbjct: 18  EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77

Query: 151 LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV 210
            G    ++  K     +G + Q    F + +I E + +   I+G      L  + + S  
Sbjct: 78  SGADVVALRRK-----IGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKS-- 129

Query: 211 LKLPNLERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
           LK   L   VK         LSGGQ++RL     +   P++I++DEPC  +DP+   ++ 
Sbjct: 130 LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189

Query: 263 DLLQVFVGKGRTVIMTTQYIEEANDASEV-AFLYKGRIIAQD 303
           DL++  + K  TVI+ T  +++A   S+   F+Y G++I  D
Sbjct: 190 DLIED-LKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230

Length = 253

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 53/204 (25%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           ++  S  +K  E   L+G S  GK+TL + I+GL+  + GEI         ++     +K
Sbjct: 29  VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI---------LFEGKDITK 79

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
           +    +         + E L       G+ E      + +Y H       E     LSGG
Sbjct: 80  LS-KEERRER-----VLELLEKV----GLPEEF----LYRYPH-------E-----LSGG 113

Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR----MWDLLQVFVGKGRTVIM----- 277
           Q++R+    A+   P+LI+ DEP   +D  V+ +    + DL +     G T +      
Sbjct: 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL---GLTYLFISHDL 170

Query: 278 -TTQYIEEANDASEVAFLYKGRII 300
              +YI     +  +A +Y G+I+
Sbjct: 171 SVVRYI-----SDRIAVMYLGKIV 189

Length = 268

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 57.9 bits (141), Expect = 5e-09
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 14/239 (5%)

Query: 73  EEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVL-NNCSLVVKRREFFVLLGASSAGKT 131
                +   K+    +    +  + E L P    L    +  +   +   L+G S AGKT
Sbjct: 331 PLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKT 390

Query: 132 TLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190
           +LL A++G L    QG + + G     +  ++    + ++ Q   +    T+++ +   G
Sbjct: 391 SLLNALLGFLP--YQGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGTLRDNV-LLG 446

Query: 191 MIYGMDESIWLFQMRKYSH--VLKLPN-LERPVK----YLSGGQKRRLSFTIAILHKPQL 243
                DE +       +    +  LP  L+ P+      LS GQ +RL+   A+L   QL
Sbjct: 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506

Query: 244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           ++LDEP   +D    + +   L     + +T +M T  +E+     ++  +  G+I+ Q
Sbjct: 507 LLLDEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564

Length = 588

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 52/246 (21%)

Query: 79  DEG-----KKEEEEEADEGKNTEKEELKPSNV------VLNNCSLVVKRREFFVLLGASS 127
           DEG     +K ++E  D   +++   L  SN+      VL N +L +++ E   + G++ 
Sbjct: 14  DEGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTG 73

Query: 128 AGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ-ELAMFGELTIKETL 186
           +GKT+LL  I+G    S+G+I            K +G ++ +  Q    M G  TIKE +
Sbjct: 74  SGKTSLLMLILGELEPSEGKI------------KHSG-RISFSSQFSWIMPG--TIKENI 118

Query: 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK---------------YLSGGQKRRL 231
             FG+ Y  DE        +Y  V+K   LE  +                 LSGGQ+ R+
Sbjct: 119 -IFGVSY--DEY-------RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168

Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291
           S   A+     L +LD P   +D    K +++     +   +T I+ T  +E    A ++
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228

Query: 292 AFLYKG 297
             L++G
Sbjct: 229 LILHEG 234

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 10/106 (9%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    AI  KP ++++DEP   +DP+   ++ + +   + K  T+I+ T  +
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM-FELKKNYTIIIVTHNM 222

Query: 283 EEANDASE-VAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITND 327
           ++A  AS+  AF Y G +I  D     ++ ++ PKL     + TND
Sbjct: 223 QQAARASDYTAFFYLGDLIEYDKT---RNIFTNPKL-----QSTND 260

Length = 267

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 63/274 (22%), Positives = 117/274 (42%), Gaps = 65/274 (23%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL N S  +++ +   + G++ +GK++LL  I+G    S+G+I            K +G 
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI------------KHSG- 487

Query: 166 KVGYMPQ-ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-- 222
           ++ + PQ    M G  TIK+ +  FG+ Y  DE        +Y+ V+K   LE  +    
Sbjct: 488 RISFSPQTSWIMPG--TIKDNI-IFGLSY--DEY-------RYTSVIKACQLEEDIALFP 535

Query: 223 -------------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD--LLQV 267
                        LSGGQ+ R+S   A+     L +LD P   +D +  K +++  L ++
Sbjct: 536 EKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595

Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKG--------------------RIIAQDSPDG 307
              K R  I+ T  +E    A ++  L++G                     ++  ++ D 
Sbjct: 596 MSNKTR--ILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDN 653

Query: 308 FKSKYSMPKLSDVFYKITNDDGTSSGPPAETSKA 341
           F ++     L++   +++ D  ++     ET K 
Sbjct: 654 FSAERRNSILTETLRRVSIDGDSTVFSGPETIKQ 687

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 29/292 (9%)

Query: 67  EDEGKEEEEEKEDEGKKEEEEEADEG--KNTEKE--------ELKPSNVVLNNCSLVVKR 116
           E   K E+    ++   + EE AD     N +          E   S+  + + S   K 
Sbjct: 301 EARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKA 360

Query: 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176
            +   ++G + AGKTTL+  +  + + + G+I + G    ++  ++    +  + Q+  +
Sbjct: 361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420

Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL--------ERPVKYLSGGQK 228
           F   +I+E +   G     DE ++       +H   L           ER  + LSGG++
Sbjct: 421 FNR-SIRENIRL-GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR-LSGGER 477

Query: 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDA 288
           +RL+   AIL    +++LDE    +D     R+ + +   + K RT  +    +    +A
Sbjct: 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA-LRKNRTTFIIAHRLSTVRNA 536

Query: 289 SEVAFLYKGRIIAQDSPDGFKSK----YSMPKLSDVFYKITNDDGTSSGPPA 336
             V FL +GR+I + S      K    Y + + S +   +TN   T     A
Sbjct: 537 DLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGL---LTNQPATKPLRKA 585

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 43/220 (19%)

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG------------EIWVLGGHPA 156
           N +L V+R     L+G S  GKTT L+AI  + +++ G            +I+     P 
Sbjct: 22  NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81

Query: 157 SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN- 215
           ++  +     VG + Q+   F  +++     F  ++ G+     L  +R   H++++   
Sbjct: 82  AMRRR-----VGMVFQKPNPFPTMSV-----FDNVVAGLK----LAGIRDRDHLMEVAER 127

Query: 216 --------------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
                         L+ P   LSGGQ++RL    A+  +P+++++DEP   +DP    R+
Sbjct: 128 SLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187

Query: 262 WDLLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
            DL+   + K  T+I+ T  + +A   S+  +F   G ++
Sbjct: 188 EDLMTD-LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226

Length = 252

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 54/213 (25%), Positives = 108/213 (50%), Gaps = 26/213 (12%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHK 161
           L++ SL  ++ +   L+G S  GK+T L+ +  + ++      +GEI + G    +IY  
Sbjct: 22  LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG---ENIYDP 78

Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
                    +VG + Q+   F + +I E + +   + G+ +  +L +  +    L+   L
Sbjct: 79  HVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE--RVERSLRHAAL 135

Query: 217 ERPVKY--------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
              VK         LSGGQ++RL    A+  +P+++++DEP   +DP+  +++ +L+   
Sbjct: 136 WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE- 194

Query: 269 VGKGRTVIMTTQYIEEANDASEV-AFLYKGRII 300
           +    T+I+ T  +++A   S+V AF Y G++I
Sbjct: 195 LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227

Length = 253

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 56.7 bits (138), Expect = 1e-08
 Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 57/189 (30%)

Query: 102 PSNVVLNNCSLVVKRREFFV-----LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA 156
           P   +L + SL      FF      +LG + AGK+TLL+ + G+    +GE         
Sbjct: 18  PKKQILKDISL-----SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP------ 66

Query: 157 SIYHKTAGSKVGYMPQELAMFGELTIKET--------------LNFFGMIYG-----MDE 197
                  G KVGY+PQE  +  E T++E                N     Y       D 
Sbjct: 67  -----APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDA 121

Query: 198 SI---------------WLF--QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK 240
                            W    Q+      L+ P  +  V  LSGG++RR++    +L K
Sbjct: 122 LAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEK 181

Query: 241 PQLIILDEP 249
           P +++LDEP
Sbjct: 182 PDMLLLDEP 190

Length = 556

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 43/217 (19%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAGSKVG 168
           S  V+  E   L+G + AGK+TLL  + G+ + S G I    G P   +   + A  +  
Sbjct: 19  SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS-GSI-QFAGQPLEAWSATELARHR-A 75

Query: 169 YMPQE------LAMFGELTI-------KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
           Y+ Q+      + ++  LT+        E LN       +D+              KL  
Sbjct: 76  YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD--------------KLG- 120

Query: 216 LERPVKYLSGGQKRRLSFTIAILH-----KP--QLIILDEPCVGVDPLVRKRMWDLLQVF 268
             R    LSGG+ +R+     +L       P  QL++LDEP   +D   +  +  LL   
Sbjct: 121 --RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178

Query: 269 VGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDS 304
             +G  ++M++  +      A     L +G+++A   
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215

Length = 248

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 13/211 (6%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            V  N ++ +    F  ++G +  GK+TLL+ +  L   + G +W+ G H      K   
Sbjct: 21  TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80

Query: 165 SKVGYMPQELAMFGELTIKETLN--------FFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
            ++G + Q     G++T++E +          F      DE      M+  + +  L + 
Sbjct: 81  RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA-TGITHLAD- 138

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTV 275
            + V  LSGGQ++R    + +  +  +++LDEP   +D   +  + +LL ++   KG T+
Sbjct: 139 -QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL 197

Query: 276 IMTTQYIEEA-NDASEVAFLYKGRIIAQDSP 305
                 + +A   AS +  L +G+I+AQ +P
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAP 228

Length = 265

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 27/222 (12%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH- 160
           P   +L+  SL     +   L+G + +GK+TLLK +   +  S+GEI +L   P   +  
Sbjct: 22  PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSS 80

Query: 161 KTAGSKVGYMPQELAMFGELTIKE-----------TLNFFGMI--YGMDESIWLFQMRKY 207
           K    KV Y+PQ+L     +T++E            L  FG      ++E+I L  ++  
Sbjct: 81  KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140

Query: 208 SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           +H        R V  LSGG+++R    + +    + ++LDEP   +D   +  +  L+  
Sbjct: 141 AH--------RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192

Query: 268 FVG-KGRTVIMTTQYIEEANDASE--VAFLYKGRIIAQDSPD 306
               +G TVI     I  A    +  VA L  G +IAQ +P 
Sbjct: 193 LSQERGLTVIAVLHDINMAARYCDYLVA-LRGGEMIAQGTPA 233

Length = 265

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVIMTTQY 281
           LSGGQK+R++   A++H+P L++LDEP   +D L R  M DL++ ++   G TV++ T  
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193

Query: 282 IEEA 285
           + EA
Sbjct: 194 VSEA 197

Length = 257

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 21/210 (10%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASIYHK 161
           L N S+ + +     L+G S  GK+T ++ +  + ++      +G++ + G     IY  
Sbjct: 28  LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG---EDIYEP 84

Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDES----IWLFQMRKYSHVLK 212
                     VG + Q+   F  ++I + + +   I+G ++     +    +R  +   +
Sbjct: 85  DVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143

Query: 213 LPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
             + L+ P   LSGGQ++RL     +  KP++I+ DEP   +DP+   R+ DL+ + + K
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI-MNLKK 202

Query: 272 GRTVIMTTQYIEEANDASE-VAFLYKGRII 300
             T+++ T  +++A   S+   F   G +I
Sbjct: 203 DYTIVIVTHNMQQAARISDYTGFFLMGELI 232

Length = 258

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    A+  +P++++LDEP   +DP+   ++ +L+Q  + K  T+++ T  +
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE-LKKKYTIVIVTHNM 203

Query: 283 EEANDAS-EVAFLYKGRIIAQDSPD 306
           ++A   S   AF Y G ++     +
Sbjct: 204 QQAARISDRTAFFYDGELVEYGPTE 228

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 13/142 (9%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E  ++ G + AGKTTLL+ + GL ++  G+I +  G  A+   ++    + Y+     + 
Sbjct: 38  EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGDRS--RFMAYLGHLPGLK 94

Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL----ERPVKYLSGGQKRRLSF 233
            +L+  E L+F   ++G          +     L +  L    +  V+ LS GQK+RL+ 
Sbjct: 95  ADLSTLENLHFLCGLHGRRAK------QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLAL 148

Query: 234 TIAILHKPQLIILDEPCVGVDP 255
               L    L +LDEP   +D 
Sbjct: 149 ARLWLSPAPLWLLDEPYANLDL 170

Length = 214

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 12/207 (5%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA 163
           LNN SL V   + + ++GAS AGK+TL++ +  L+  + G + V G    ++ +     A
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
             ++G + Q   +    T+   +    +   +D +      RK + +L L  L ++   Y
Sbjct: 81  RRQIGMIFQHFNLLSSRTVFGNV---ALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY 137

Query: 223 ---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMT 278
              LSGGQK+R++   A+   P++++ DE    +DP   + + +LL+    + G T+++ 
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI 197

Query: 279 TQYIEEAND-ASEVAFLYKGRIIAQDS 304
           T  ++        VA +  G +I Q +
Sbjct: 198 THEMDVVKRICDCVAVISNGELIEQGT 224

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168
           N SL V+  E   L G   AG+T L + + GL+    G I  L G   +          G
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM-LNGKEINALSTAQRLARG 339

Query: 169 --YMP---QELAMFGELTIKETLNFFGMIYGMDESIWLFQMR------KYSHVL--KLPN 215
             Y+P   Q   ++ +  +    N   + +      W+   R      +Y   L  K  +
Sbjct: 340 LVYLPEDRQSSGLYLDAPL--AWNVCALTHN-RRGFWIKPARENAVLERYRRALNIKFNH 396

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
            E+  + LSGG ++++     +   PQL+I+DEP  GVD   R  ++ L++    +   V
Sbjct: 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAV 456

Query: 276 IMTTQYIEEAND-ASEVAFLYKGRI 299
           +  +  +EE    A  V  +++G I
Sbjct: 457 LFISSDLEEIEQMADRVLVMHQGEI 481

Length = 510

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 35/224 (15%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----IS----QGEIWVLGGHPA 156
            L + +L + + +   L+G S  GK+TLL+ +    N     I     +GE+ + G    
Sbjct: 22  ALKDINLDIPKNKVTALIGPSGCGKSTLLRCL----NRMNDLIPGARVEGEVLLDG---K 74

Query: 157 SIYHKTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
           +IY           +VG + Q+   F  ++I + + +   ++G+ +   L ++ + S  L
Sbjct: 75  NIYDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDKE-LDEIVESS--L 130

Query: 212 KLPNLERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
           K   L   VK         LSGGQ++RL    A+  KP+++++DEP   +DP+   ++ +
Sbjct: 131 KKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190

Query: 264 LLQVFVGKGRTVIMTTQYIEEANDAS-EVAFLYKGRIIAQDSPD 306
           L+     K  T+++ T  +++A   S   AF Y G ++     D
Sbjct: 191 LITELKKK-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233

Length = 253

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 23/212 (10%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL------------KNISQGEIWVLGGH 154
           LN  S  + + E+  ++G + +GK+T  + I GL            + ++   +W L   
Sbjct: 23  LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82

Query: 155 PASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP 214
              ++       VG   ++   FG     + +    MI  +DE++    M  +       
Sbjct: 83  IGMVFQNPDNQFVGATVEDDVAFG--MENQGIPREEMIKRVDEALLAVNMLDFK------ 134

Query: 215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR- 273
              R    LSGGQK+R++    I  +P++IILDE    +DP  R+ +  ++     K + 
Sbjct: 135 --TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192

Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
           TV+  T  ++EA  +  +  +  G II + +P
Sbjct: 193 TVLSITHDLDEAASSDRILVMKAGEIIKEAAP 224

Length = 277

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 38/159 (23%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKT 162
             +  N +L+++  E   ++G +  GKTTLL+ +VG      G + W            +
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW------------S 379

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-------VL-KL- 213
             + +GY  Q+ A   +     TL         D   W+ Q R+           L +L 
Sbjct: 380 ENANIGYYAQDHA--YDFENDLTL--------FD---WMSQWRQEGDDEQAVRGTLGRLL 426

Query: 214 ---PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
               ++++ VK LSGG+K R+ F   ++ KP ++++DEP
Sbjct: 427 FSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465

Length = 530

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 55.2 bits (134), Expect = 4e-08
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 37/224 (16%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP----ASIYHKTAGSK 166
           S  V+  E   + G +  G++ L++AI GL+  + G I  L G       S   +     
Sbjct: 278 SFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL-LNGKDVLGRLSPRERRR-LG 335

Query: 167 VGYMPQE-----LAMFGELTIKETLNFFGMIYGMDESIWLF----QMRKYSHVL------ 211
           + Y+P++     L +  +L++ E L   G       S   F     +RK++  L      
Sbjct: 336 LAYVPEDRHGHGLVL--DLSLAENL-VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392

Query: 212 KLPNLERPVKYLSGGQKRRLSFTIA--ILHKPQLIILDEPCVGVD----PLVRKRMWDLL 265
           + P+ + P + LSGG +++    +A  +  +P L+I  +P  G+D      + +R+ +L 
Sbjct: 393 RAPSPDAPARSLSGGNQQK--LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450

Query: 266 QVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGF 308
                 G+ V++ ++ ++E    +  +A +Y+GRI+    P+  
Sbjct: 451 D----AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490

Length = 501

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 53.6 bits (130), Expect = 4e-08
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 43/230 (18%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              +L++ SL ++  E   +LG + AGK+TLL+A+ G  +   GE+  L G P +     
Sbjct: 14  GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR-LNGRPLA----- 67

Query: 163 AGSKVGYMPQELA-MFGELTIKETLNF-FGM--IYGMDESIWLFQMRK----YSHVLKLP 214
                 + P ELA     L    +L+F F +  +  M  +       +     +  L   
Sbjct: 68  -----DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV 122

Query: 215 NL----ERPVKYLSGGQKRRLSF--TIAILH----KPQLIILDEPCVGVDPLVRKRMWDL 264
           +L     R    LSGG+++R+     +A L      P+ ++LDEP   +D   +  +  L
Sbjct: 123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL 182

Query: 265 LQVFVGK-GRTVI-------MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
            +    + G  VI       +  +Y      A  +  L++GR++A  +P 
Sbjct: 183 ARQLAHERGLAVIVVLHDLNLAARY------ADRIVLLHQGRLVADGTPA 226

Length = 258

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 27/159 (16%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---- 162
           L++ S   +  +   L+G + AGK+TLLK + G      G I  + G        T    
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL-IDGQEMRFASTTAALA 78

Query: 163 AGSKVGYMPQELAMFGELTIKETL------NFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
           AG  + Y  QEL +  E+T+ E L      +  G++   +       +   +   +L +L
Sbjct: 79  AGVAIIY--QELHLVPEMTVAENLYLGQLPHKGGIV---NRR----LLNYEA-REQLEHL 128

Query: 217 ------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                 + P+KYLS GQ++ +    A+    ++I  DEP
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167

Length = 501

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 21/210 (10%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKTAG 164
            L++ SLV++  E   L+G S +GK+TL+  I        G+I +L GH  A     +  
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDGHDLADYTLASLR 405

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHVLKLPN-L 216
            +V  + Q++ +F + TI   +      YG  E     ++ +          V KLP  L
Sbjct: 406 RQVALVSQDVVLFND-TIANNIA-----YGRTEQADRAEIERALAAAYAQDFVDKLPLGL 459

Query: 217 ERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
           + P+      LSGGQ++RL+   A+L    ++ILDE    +D    + +   L+  + +G
Sbjct: 460 DTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QG 518

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           RT ++    +     A  +  +  GRI+ +
Sbjct: 519 RTTLVIAHRLSTIEKADRIVVMDDGRIVER 548

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASI 158
           P + +L N +  + + E   L+G S  GK+TLL  ++G         GE+W+       +
Sbjct: 13  PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH-VLKLPNLE 217
               A  ++G + Q+  +F  L++ + L F      +  ++     R  ++  L+   L+
Sbjct: 73  --PAAQRQIGILFQDALLFPHLSVGQNLLF-----ALPATLKGNARRNAANAALERSGLD 125

Query: 218 ----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK--RMWDLLQVFVGK 271
               +    LSGGQ+ R++   A+L +P+ ++LDEP   +D  +R   R W   +V    
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV-RAA 184

Query: 272 GRTVIMTTQYIEEANDASEV 291
           G   +  T  +++    S V
Sbjct: 185 GIPTVQVTHDLQDVPAGSRV 204

Length = 213

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 31/221 (14%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA------------IVGLKNISQGEIWVL 151
           N  L + +L +  R+   L+G S  GK+TLL+             I G   +   +I+  
Sbjct: 16  NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY-- 73

Query: 152 GGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
                +I       KVG + Q+   F  ++I E + +     G+ +   L ++ + S  L
Sbjct: 74  ----GNIDVADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERS--L 126

Query: 212 KLPNLERPVKY--------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
           +   L   VK         LSGGQ++RL     I  +P +I++DEP   +DP+   ++ +
Sbjct: 127 RGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186

Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQD 303
           L++  + K  T+++ T  +++A   S+  AF   G ++  D
Sbjct: 187 LMEE-LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226

Length = 249

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 18/215 (8%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           L + S  + + ++  ++G + +GK+T+ K ++G++ +  GEI        +  +     K
Sbjct: 25  LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRK 83

Query: 167 -VGYMPQ--ELAMFGELTIKETLNFFGMIYGMD-ESIWLFQM-RKYSHVLKLPNLERPVK 221
            +G + Q  +    G   +K     + + +G++  ++   +M R+ S  LK  ++     
Sbjct: 84  HIGIVFQNPDNQFVGS-IVK-----YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD 137

Query: 222 Y----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ-VFVGKGRTVI 276
           Y    LSGGQK+R++    +   P +IILDE    +DP  R+ + DL++ V      T+I
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITII 197

Query: 277 MTTQYIEEANDASEVAFLYKGRIIAQDSP-DGFKS 310
             T  + EA +A  V  + KG +  + +P + F  
Sbjct: 198 SITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232

Length = 269

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 23/212 (10%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHKT 162
           N+VL N +L V  R F  L+G + +GK+TL   ++G   +++GEI  L G P +S+ H  
Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR-LDGRPLSSLSHSV 412

Query: 163 AGSKVGYMPQE---LA--MFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPN 215
               V  + Q+   LA      +T+   ++        +E +W  L  ++       LP+
Sbjct: 413 LRQGVAMVQQDPVVLADTFLANVTLGRDIS--------EEQVWQALETVQLAELARSLPD 464

Query: 216 -----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                L      LS GQK+ L+    ++  PQ++ILDE    +D    + +   L   V 
Sbjct: 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA-VR 523

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           +  T+++    +    +A  +  L++G+ + Q
Sbjct: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555

Length = 592

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 21/212 (9%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-KNISQGEIWVLGGHPASIYH--KTA 163
           +++ S  ++R E   + G   AG+T L++A+ G      +G ++ + G P  I +  +  
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF-INGKPVDIRNPAQAI 334

Query: 164 GSKVGYMPQE---------LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL- 213
            + +  +P++         L +   +T+   L  F     +D +  L  +      LK+ 
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393

Query: 214 ---PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
              P L  P+  LSGG +++      +L  P+++ILDEP  GVD   +  ++ L+     
Sbjct: 394 TASPFL--PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451

Query: 271 KGRTVIMTTQYIEEANDASE-VAFLYKGRIIA 301
           +G  +I+ +  + E    S+ V  + +G++  
Sbjct: 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 61/237 (25%), Positives = 91/237 (38%), Gaps = 70/237 (29%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG--GHPASIYHKTA 163
           VL   SL +   E   ++GAS +GK+TL+       NI       LG    P S  ++ A
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLM-------NI-------LGCLDKPTSGTYRVA 68

Query: 164 GSKVGYM-PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY---SHVLKLPNLERP 219
           G  V  +    LA             FG I         FQ  +Y   SH+    N+E P
Sbjct: 69  GQDVATLDADALAQLRR-------EHFGFI---------FQ--RYHLLSHLTAAQNVEVP 110

Query: 220 VKY-------------------------------LSGGQKRRLSFTIAILHKPQLIILDE 248
             Y                               LSGGQ++R+S   A+++  Q+I+ DE
Sbjct: 111 AVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE 170

Query: 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
           P   +D    + +  +L     +G TVI+ T   + A  A  V  +  G I+  + P
Sbjct: 171 PTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR-NPP 226

Length = 648

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 30/211 (14%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS 157
           S + + N  L + + +    +G S  GK+T+L+    L ++      +G++     H  +
Sbjct: 22  SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTF---HGKN 78

Query: 158 IYHKTAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYG----MDESI--WLFQMRK 206
           +Y           ++G + Q+   F + +I + + +   I G    MDE +   L Q   
Sbjct: 79  LYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAAL 137

Query: 207 YSHV---LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
           +  V   LK   L      LSGGQ++RL    AI  +P++I++DEPC  +DP+   R+ +
Sbjct: 138 WDEVKDKLKQSGLS-----LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192

Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASEV-AF 293
           L+   + +  T+I+ T  +++A   S++ AF
Sbjct: 193 LMHE-LKEQYTIIIVTHNMQQAARVSDMTAF 222

Length = 264

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    AI  +P++++LDEPC  +DP+  +R+ +L+ V + K  T+ + T  +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM-VELKKDYTIALVTHNM 208

Query: 283 EEANDASEVAFLY 295
           ++A   ++    +
Sbjct: 209 QQAIRVADTTAFF 221

Length = 261

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 32/182 (17%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
              ++  SL ++R +   L+G S +GK+TL  A++ L   SQGEI   G     I     
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDG---QDI---DG 352

Query: 164 GSKVGYMPQELAM-------FGELT--------IKETLNFFGMIYGMDESIWLFQMRKYS 208
            S+    P    M       +G L+        I+E L          E     + ++  
Sbjct: 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAE-----RDQRVI 407

Query: 209 HVLKLPNLERPVKY-----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
             L+   L+   +       SGGQ++R++   A++ KP+LI+LDEP   +D  V+ ++ D
Sbjct: 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467

Query: 264 LL 265
           LL
Sbjct: 468 LL 469

Length = 534

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 98  EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS 157
           +E      VL+N S  +   E   ++G+S +GK+TLL  + GL   + G++ +  G P S
Sbjct: 16  QEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMS 74

Query: 158 IYHKTAGS-----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
                A +     K+G++ Q   +  + T  E +    +I     +       +   +L 
Sbjct: 75  KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE---INSRALEMLA 131

Query: 213 LPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
              LE    +    LSGG+++R++   A+++ P+L++ DEP   +D      ++ LL 
Sbjct: 132 AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLG 189

Length = 233

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 55/217 (25%), Positives = 105/217 (48%), Gaps = 22/217 (10%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKTA 163
           LNN ++ + +     L+G S  GK+T L+ +  + ++ +G I + G       +IY    
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81

Query: 164 G-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER 218
                  K+G + Q    F  ++I + +++   I+G  +   L ++ + S  LK   L  
Sbjct: 82  DILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQS--LKKSALWN 138

Query: 219 PVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
            VK         LSGGQ++RL     +  +P +I++DEP   +DP+   ++ +L+ + + 
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELI-INLK 197

Query: 271 KGRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPD 306
           +  T+I+ T  +++A   S+  AF   G I  + S D
Sbjct: 198 ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234

Length = 254

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL     I  +P++++LDEPC  +DP+   R+ +L+   + +  TV++ T  +
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE-LKQDYTVVIVTHNM 215

Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
           ++A   S+  AF+Y G +I   + D
Sbjct: 216 QQAARCSDYTAFMYLGELIEFGNTD 240

Length = 260

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 24/215 (11%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHK 161
           L   S+ ++ +     +G S  GK+T L+    + ++      +GEI + G    +IY K
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG---RNIYDK 75

Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
                     VG + Q    F + +I E + +   + G+ ++ ++ Q  +    LK   L
Sbjct: 76  GVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQ--RVEETLKGAAL 132

Query: 217 ERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
              VK         LSGGQ++RL    A+   P ++++DEP   +DP+   ++ +L+   
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192

Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD 303
                 VI+T    + A  + + AF Y G ++  D
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227

Length = 250

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
            +   +   +L +KR E   L+G + +GK+TL   + GL     GEI +L G P S    
Sbjct: 334 DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI-LLDGKPVS---- 388

Query: 162 TAGSKVGYMPQELAMFGELTI-KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPV 220
            A     Y     A+F +  +  + L   G         WL Q  + +H   L +     
Sbjct: 389 -AEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWL-QRLELAHKTSLNDGRFSN 446

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVIMTT 279
             LS GQK+RL+  +A+L +  +++LDE     DP  R+  +  LL +   +G+T+   +
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506

Length = 546

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL     I  KP++I++DEP   +DP+   ++ +L++    K  T+I+ T  +
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHNM 207

Query: 283 EEANDASE-VAFLYKGRII 300
           ++A   S+  AF Y G ++
Sbjct: 208 QQAARVSDYTAFFYMGDLV 226

Length = 252

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 31/147 (21%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM-P----- 171
           EF VL+G S  GK+TLL+ + GL+ I+ GEIW+             G  V  + P     
Sbjct: 31  EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI------------GGRVVNELEPADRDI 78

Query: 172 ----QELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHV---LKL-PNLERPVKY 222
               Q  A++  ++++E + +   I GM    I      + +     L+L P L+R  + 
Sbjct: 79  AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEI----EERVAEAARILELEPLLDRKPRE 134

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEP 249
           LSGGQ++R++   AI+ +P + + DEP
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEP 161

Length = 356

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 39/212 (18%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           VL N S  VK  E   ++G + AGK+TL+ A+       +G+I + G   ++I  +   S
Sbjct: 23  VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----NLERPVK 221
            +  +PQ+  +F   TI+  L+ F      DE I+          L++     N      
Sbjct: 83  SLTIIPQDPTLFSG-TIRSNLDPFDEY--SDEEIY--------GALRVSEGGLN------ 125

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD--------PLVRKRMWDLLQVFVGKGR 273
            LS GQ++ L    A+L +P++++LDE    +D          +R+              
Sbjct: 126 -LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---------TNS 175

Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
           T++     +    D  ++  +  G +   D P
Sbjct: 176 TILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 14/209 (6%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
           N VL N S  +   +   LLG + +GK+TLL A + L N  +G+I + G    S+  +  
Sbjct: 17  NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDIQIDGVSWNSVPLQKW 75

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF--QMRKYSHVLKLPN-----L 216
               G +PQ++ +F   T ++ L+ +G     DE IW    ++   S + + P      L
Sbjct: 76  RKAFGVIPQKVFIFSG-TFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTV 275
                 LS G K+ +    ++L K ++++LDEP   +DP+  + +   L Q F     TV
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC--TV 190

Query: 276 IMTTQYIEEANDASEVAFLYKGRIIAQDS 304
           I++   IE   +      + + ++   DS
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKVRQYDS 219

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 25/83 (30%), Positives = 50/83 (60%), Gaps = 10/83 (12%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----VRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++RL    AI  +P++++LDEP   +DP+    + + + +L   +     T+++ 
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKY-----TIVIV 223

Query: 279 TQYIEEANDASEV-AFLYKGRII 300
           T  +++A   S+  AF+Y G+++
Sbjct: 224 THNMQQAARVSDYTAFMYMGKLV 246

Length = 272

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 14/194 (7%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           LLG + +GK+TLL+ + G      G + + G     +  +    +V  + Q+      LT
Sbjct: 32  LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91

Query: 182 IKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLS 232
           +++          + +      D ++    + +     +L +L +R +  LSGG+++R+ 
Sbjct: 92  VRDVVALGRIPHRSLWAGDSPHDAAV----VDRALARTELSHLADRDMSTLSGGERQRVH 147

Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE-V 291
              A+  +P+L++LDEP   +D   +     L++     G TV+     +  A    + V
Sbjct: 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV 207

Query: 292 AFLYKGRIIAQDSP 305
             L  GR++A   P
Sbjct: 208 VVLDGGRVVAAGPP 221

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 50/213 (23%), Positives = 105/213 (49%), Gaps = 26/213 (12%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHK 161
           L   +L ++  +   L+G S  GK+T L+ +  + ++      +GE+ + G     IY  
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG---QDIYKS 75

Query: 162 TAG-----SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-- 214
                    +VG + Q+   F  ++I + + +    +G+ +   L ++ + S  LK    
Sbjct: 76  DIDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKS--LKGAAL 132

Query: 215 ------NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
                  L++    LSGGQ++RL    A+  +P+++++DEP   +DP+   ++ +L+Q  
Sbjct: 133 WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE- 191

Query: 269 VGKGRTVIMTTQYIEEANDAS-EVAFLYKGRII 300
           + K  T+++ T  +++A+  S + AF   G I+
Sbjct: 192 LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224

Length = 250

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 41/224 (18%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
              LN+ S  VK+ E+  ++G + +GK+T ++ I GL     G+I + G           
Sbjct: 20  KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-------DLLT 72

Query: 164 GSKVGYMPQELAM--------FGELTIKETLNFFG----------MIYGMDESIWLFQMR 205
              V  +  ++ M        F   T+++ + F G          M   ++E++ L  M+
Sbjct: 73  EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAF-GLENKGIPHEEMKERVNEALELVGMQ 131

Query: 206 KYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
            +         ER    LSGGQK+R++   A+  +P++IILDE    +DP  R    +L+
Sbjct: 132 DFK--------EREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL---ELI 180

Query: 266 QVFVG----KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
           +   G       TVI  T  ++E   +  V  +  G++ +  +P
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTP 224

Length = 279

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 44/198 (22%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS------ 157
             +L+N S  V   E + ++G + AGK+TLL  I G              HP        
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-------------DHPQGYSNDLT 319

Query: 158 IYHKTAGS---------KVGYMPQELAMFGELTIKET-LNFFGMIYGMDESIWLFQ---- 203
           ++ +  GS          +GY+   L +  +  +  +  N   ++ G  +SI ++Q    
Sbjct: 320 LFGRRRGSGETIWDIKKHIGYVSSSLHL--DYRVSTSVRNV--ILSGFFDSIGIYQAVSD 375

Query: 204 --MRKYSHVLKLPNL-----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL 256
              +     L +  +     + P   LS GQ+R      A++  P L+ILDEP  G+DPL
Sbjct: 376 RQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435

Query: 257 VRKRMWDLLQVFVGKGRT 274
            R+ +   + V + +G T
Sbjct: 436 NRQLVRRFVDVLISEGET 453

Length = 490

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PNLERPVKYLSGGQKRRLSFT 234
           +   L  F  I G   ++   +++    V +L         L+  +K +S G KR L+  
Sbjct: 142 LLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALL 201

Query: 235 IAIL---HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
           +A+L    K  L+++DEP  G+ P + +++ +LL+    KG  +I TT
Sbjct: 202 LALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249

Length = 256

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 34/195 (17%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-KNISQGEIWVLGGHPASIYHKTAG 164
            +++ S  ++R E   + G   AG+T L++ + G      +GEI+ + G P  I +    
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF-IDGKPVKIRN---- 331

Query: 165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMD--ESIWLFQMRKYSHV------------ 210
                 PQ+    G   + E     G++  M   ++I L  + +++              
Sbjct: 332 ------PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTI 385

Query: 211 --------LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
                   +K  + E  +  LSGG +++      +L  P+++ILDEP  G+D   +  ++
Sbjct: 386 LESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY 445

Query: 263 DLLQVFVGKGRTVIM 277
            L+   V +G  +I+
Sbjct: 446 KLINQLVQQGVAIIV 460

Length = 506

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 42/221 (19%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----GLKNIS-QGEIWVLGGHPASIYHK 161
           L+  SL  + +E   L+G S  GK+T L+ +      ++NI   GEI   G    +IY  
Sbjct: 20  LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG---QNIY-- 74

Query: 162 TAGSK---------VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK 212
             GSK         VG + Q+   F   ++ + + +   I G+ +   + Q  + S  LK
Sbjct: 75  --GSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEES--LK 129

Query: 213 LP--------NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL----VRKR 260
                     NL+R  +  SGGQ++R+    A+  +P++++LDEP   +DP+    + + 
Sbjct: 130 QAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189

Query: 261 MWDLLQVFVGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
           + +L   +     T IM T  +++A   S+  AFL  G +I
Sbjct: 190 LMELKHQY-----TFIMVTHNLQQAGRISDQTAFLMNGDLI 225

Length = 251

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP------LVRKRMWDLLQVFVG 270
           ER V  LSGGQK+R+S   A+L   +++ILD+    VD       L   R W       G
Sbjct: 447 ERGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW-------G 498

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           +GRTVI++   +    +ASE+  +  G I  +
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530

Length = 569

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 51.1 bits (122), Expect = 9e-07
 Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 20/191 (10%)

Query: 104  NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
              VL + S  V+  +   LLG + +GK+TLL A++ L + ++GEI + G    S+  +T 
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290

Query: 164  GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF--QMRKYSHVLKLPN-----L 216
                G +PQ++ +F   T ++ L+ +      DE IW    ++   S + + P+     L
Sbjct: 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYEQW--SDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347

Query: 217  ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKG 272
                  LS G K+ +    +IL K ++++LDEP   +DP    ++RK    L Q F    
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK---TLKQSF--SN 1402

Query: 273  RTVIMTTQYIE 283
             TVI++   +E
Sbjct: 1403 CTVILSEHRVE 1413

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 34/186 (18%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYH 160
               VLNN SL +K  E   LLG S  GK+TL + +VGL++ SQG + W   G P +   
Sbjct: 23  QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWR--GEPLA--- 77

Query: 161 KTAGSKVGYMPQELAM--------------FGELTIKETLNFFGMIYGMDESIWLFQMRK 206
           K   ++     +++ M                E+ I+E L     +  +D++    ++ +
Sbjct: 78  KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI-IREPLRH---LLSLDKAE---RLAR 130

Query: 207 YSHVLKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
            S +L+  +L      +RP + LSGGQ +R+    A+  +P+L+ILDE    +D +++  
Sbjct: 131 ASEMLRAVDLDDSVLDKRPPQ-LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189

Query: 261 MWDLLQ 266
           +  LL+
Sbjct: 190 VIRLLK 195

Length = 268

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 53/224 (23%), Positives = 82/224 (36%), Gaps = 49/224 (21%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV-GY 169
           S  V+  E   L+G + AGK+TLL  + GL     G I    G P   +     ++   Y
Sbjct: 16  SAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSI-QFAGQPLEAWSAAELARHRAY 73

Query: 170 ----------MP--QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL 216
                     MP  Q L +                           + + +  L L   L
Sbjct: 74  LSQQQTPPFAMPVFQYLTLHQPD-------------KTRTEAVASALNEVAEALGLDDKL 120

Query: 217 ERPVKYLSGGQKRRLSFTIAILH-----KP--QLIILDEPCVGVDPLVRKRMWDLLQVFV 269
            R V  LSGG+ +R+     +L       P  QL++LDEP   +D   +  +  LL    
Sbjct: 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180

Query: 270 GKGRTVIM-------TTQYIEEANDASEVAFLYKGRIIAQDSPD 306
            +G  V+M       T ++      A  V  L +G+++A    D
Sbjct: 181 QQGIAVVMSSHDLNHTLRH------ADRVWLLKQGKLLASGRRD 218

Length = 248

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 29/213 (13%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKT 162
           +L   S+ + + +   ++G S  GK+T LK +  +  + + E+ V G       +IY + 
Sbjct: 22  ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGRVEFFNQNIYERR 80

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGM------IYGMDESIWLFQMRKYSHV---LKL 213
               +  + ++++M     +    N F M       YG+    W  ++     V   LK 
Sbjct: 81  V--NLNRLRRQVSM-----VHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKD 133

Query: 214 PNLERPVKY--------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
            +L   +K+        LSGGQ++RL    A+  KP+++++DEPC G+DP+   ++  L+
Sbjct: 134 ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193

Query: 266 QVFVGKGR-TVIMTTQYIEEANDASEVAFLYKG 297
           Q    +   T+++ +  + + +  S+    +KG
Sbjct: 194 QSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226

Length = 261

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 27/222 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGH---PASIYH 160
           +L   +L VK+ E   ++G + +GK+TL K I G  +  ++ G I    G          
Sbjct: 15  ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL-FKGQDLLELEPDE 73

Query: 161 KT-AGSKVGY-MPQEL-----AMFGELTIKETLNFFGMIYG---MDESIWLFQMRKYSHV 210
           +  AG  + +  P+E+       F    ++  LN      G   +D   +L  ++    +
Sbjct: 74  RARAGLFLAFQYPEEIPGVSNLEF----LRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129

Query: 211 LKLPN--LERPVKY-LSGGQKRRLS-FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
           L +    L R V    SGG+K+R     +A+L +P+L ILDE   G+D    K + + + 
Sbjct: 130 LGMDEEFLNRSVNEGFSGGEKKRNEILQMALL-EPKLAILDEIDSGLDIDALKIVAEGIN 188

Query: 267 VFVGKGRTVIMTTQY--IEEANDASEVAFLYKGRIIAQDSPD 306
                 R+ ++ T Y  +        V  L  GRI+     +
Sbjct: 189 RLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L      LSGGQ++RL    A+   P ++++DEP   +DP+  +++ +L+     K   V
Sbjct: 149 LHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIV 208

Query: 276 IMTTQYIEEANDASEVAFLYKGRII 300
           I+T    + A  + + AF Y G ++
Sbjct: 209 IVTHNMQQAARVSDQTAFFYMGELV 233

Length = 259

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    AI  KP ++++DEPC  +DP+  +++ +L  + + +  T+IM T  +
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC-LELKEQYTIIMVTHNM 220

Query: 283 EEAN 286
           ++A+
Sbjct: 221 QQAS 224

Length = 274

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L++P   LSGGQ++RL    AI  +P ++++DEPC  +DP+    + DL+         V
Sbjct: 142 LDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIV 201

Query: 276 IMTTQYIEEANDASEVAF 293
           I+T    + A  + + AF
Sbjct: 202 IVTHNMQQAARVSDQTAF 219

Length = 258

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L  P   LSGGQ++RL    AI   P++I++DEPC  +DP+   ++ +L+         V
Sbjct: 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIV 216

Query: 276 IMTTQYIEEANDASEVAFLYKGRII 300
           I+T    + A  +   AF + G ++
Sbjct: 217 IVTHSMQQAARVSQRTAFFHLGNLV 241

Length = 267

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 13/205 (6%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQ--GEIWVLGGHPASIYHKTA 163
           L + ++ +++ +   L+GAS  GK+T L+    + + I++  G + + G    +      
Sbjct: 18  LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77

Query: 164 GSKVGYMPQELAMFGELTIKETLNF----FGMIYGMDESIWLFQ--MRKYSHVLKLPN-L 216
              VG + Q+  +F + +I E +++     GMI   DE   L    ++K     ++ + L
Sbjct: 78  RKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
           ++    LSGGQ++RL    A+  KP+L++LDEP   +DP+    + +LL+  +    ++I
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE-LSHNLSMI 195

Query: 277 MTTQYIEEANDASE-VAFLYKGRII 300
           M T  +++    ++  AF + G +I
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELI 220

Length = 246

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 13/154 (8%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHP--ASIYHKT 162
           L+   L V+  E   L G + AGK+TL+K + G+       GEI    G P  AS    T
Sbjct: 17  LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNIRDT 75

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFG---MIYG--MDESIWLFQMRKYSHVLKLP--N 215
             + +  + QEL +  EL++ E + F G    + G  M  +    + +     L+L   N
Sbjct: 76  ERAGIVIIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
           + RPV    GGQ++ +    A+  + +L+ILDEP
Sbjct: 135 VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP 168

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L+R  KYLS G+ R+     A++ +P L+ILDEP  G+D   R+++ +LL      G T+
Sbjct: 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL 188

Query: 276 IM 277
           ++
Sbjct: 189 VL 190

Length = 490

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 33/170 (19%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            VL N +L +K  +   ++G S AGKTTLL+ I+G    +Q         P S   +   
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG----AQKGRGEEKYRPDSGKVEVPK 452

Query: 165 SKVGYM-PQEL-AMFGELTIKE-----------TLNFFGMIYGMDESIWLFQMRKYSHVL 211
           + V  + P E    FGE+TI E            +         D        RK+S   
Sbjct: 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV---LYRRKFSE-- 507

Query: 212 KLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
                      LS GQK R      +  +P ++++DE    +D L   R+
Sbjct: 508 -----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRV 546

Length = 593

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    AI   P++I++DEP   +DP+   ++ DL++    +  TV++ T  +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNM 239

Query: 283 EEANDASE--VAFLYKGRIIAQDSPD 306
           ++A   S+    FL  G ++  D  D
Sbjct: 240 QQAARISDKTAVFLTGGELVEFDDTD 265

Length = 285

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 14/168 (8%)

Query: 122  LLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
            L+G S AGKTTL+  + G K     +G+I +  G P     +T     GY  Q      +
Sbjct: 911  LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI-SGFPKK--QETFARISGYCEQNDIHSPQ 967

Query: 180  LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLER---------PVKYLSGGQKRR 230
            +T++E+L +   +    E     +M     V++L  L+           V  LS  Q++R
Sbjct: 968  VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKR 1027

Query: 231  LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
            L+  + ++  P +I +DEP  G+D      +   ++  V  GRTV+ T
Sbjct: 1028 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1075

Length = 1470

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 19/194 (9%)

Query: 108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYHKTAGS 165
            + S  V R E     G   +G+T L+  + G+   + GEI + G    P S        
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL-DAVKK 338

Query: 166 KVGYMPQ---ELAMFGELTIKETLNF------------FGMIYGMDESIWLFQMRKYSHV 210
            + Y+ +   +   F   +I + +               G+ + +DE       R+    
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA- 397

Query: 211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
           LK  ++ + +  LSGG ++++  +  +   P++II DEP  G+D   +  ++ +++    
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457

Query: 271 KGRTVIMTTQYIEE 284
            G+ ++M +  + E
Sbjct: 458 DGKVILMVSSELPE 471

Length = 510

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 15/96 (15%)

Query: 223 LSGGQKRRLSF--TIAILHKPQLIILDEPCVGVDPL----VRKRMWDLLQVFVGKGRTVI 276
           LSGGQ++RL    TIAI  +P++I++DEPC  +DP+    + + M +L + F     T++
Sbjct: 155 LSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIEETMHELKKNF-----TIV 207

Query: 277 MTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY 312
           + T  +++A   S++   +       +   G K  Y
Sbjct: 208 IVTHNMQQAVRVSDMTAFFNA--EEVEGGSGGKVGY 241

Length = 269

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 61/237 (25%), Positives = 92/237 (38%), Gaps = 49/237 (20%)

Query: 59  LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGK-----NTEKEE----LKPSNVVL-N 108
           L+  K       + EE E   EG +        G      N  K E    + P+  VL  
Sbjct: 410 LDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIE 469

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-VLGGHPASIYHKTAGSKV 167
           + S  V      ++ G +  GK++L + +        GE+W V GG       K A  K+
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFRIL--------GELWPVYGG----RLTKPAKGKL 517

Query: 168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--------HVLKLPN-LER 218
            Y+PQ   M    T+++ +     IY    S    + R  S          ++L + LER
Sbjct: 518 FYVPQRPYM-TLGTLRDQI-----IYPD--SSEDMKRRGLSDKDLEQILDNVQLTHILER 569

Query: 219 PVKY---------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
              +         LSGG+K+R++      HKPQ  ILDE    V   V   M+ L +
Sbjct: 570 EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L++    LSGGQ++RL     +  +P++++LDEP   +DP    ++ DL+Q   G   T+
Sbjct: 176 LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTI 234

Query: 276 IMTTQYIEEANDASE-VAFLYKGRII 300
           ++ T  +++A+  S+   F Y+G ++
Sbjct: 235 MIVTHNMQQASRVSDYTMFFYEGVLV 260

Length = 286

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 16/210 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           S  VL+N +L +K  EF  ++G S +GK+TL K +  L     G++ V G   A      
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-KYSHVLKLPN-LERPV 220
              ++G + QE  +F   +I++ +         +  I   ++   +  + +LP      V
Sbjct: 529 LRRQMGVVLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587

Query: 221 ----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKG 272
                 LSGGQ++R++   A++  P+++I DE    +D     L+ + M +     + +G
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE-----ICRG 642

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           RTVI+    +        +  L KG+I   
Sbjct: 643 RTVIIIAHRLSTVRACDRIIVLEKGQIAES 672

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL     +   P++I++DEP   +DP+   ++ DL++  + +  TV++ T  +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE-LAEEYTVVVVTHNM 259

Query: 283 EEANDASE--VAFLYKGRIIAQDSPD 306
           ++A   S+    FL  G ++  D  D
Sbjct: 260 QQAARISDQTAVFLTGGELVEYDDTD 285

Length = 305

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 10/158 (6%)

Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
           GA+  GK++LL+ I G+   S G I+       +I +  A     Y+   L +  E+T+ 
Sbjct: 33  GANGCGKSSLLRMIAGIMQPSSGNIYY---KNCNI-NNIAKPYCTYIGHNLGLKLEMTVF 88

Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ 242
           E L F+  IY   E+++        H  KL + L+     LS G ++ ++    I  +  
Sbjct: 89  ENLKFWSEIYNSAETLY-----AAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143

Query: 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
           L +LDE    +    R  + +L+ +    G  V++++ 
Sbjct: 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181

Length = 195

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV--------LGGHPA- 156
           VL N SL V   E  VL G S +GK+TLL+++       +G+I V        L      
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 157 ---SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL 213
               +   T    +GY+ Q L +   ++  + +    +  G+   +   +       L L
Sbjct: 86  EVLEVRRTT----IGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL 141

Query: 214 PNLER----PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
           P  ER         SGG+++R++     +    +++LDEP   +D   R  + +L++
Sbjct: 142 P--ERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196

Length = 235

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 18/183 (9%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           LNN S  V   E   ++G + +GK+TL   I G+   ++G + + G   A++   ++G  
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS--AALIAISSG-- 95

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLF--QMRKYSHVLKLPNLERPVKYL 223
                    + G+LT  E +   G++ G+  E I     ++ +++ + K     +PVK  
Sbjct: 96  ---------LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY--QPVKTY 144

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
           S G K RL F I++   P ++++DE     D    K+  D +  F  +G+T+   +  + 
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204

Query: 284 EAN 286
           +  
Sbjct: 205 QVK 207

Length = 549

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 54/262 (20%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEI-----------WV- 150
            VL N S  ++  E   +LG S AGK+ L+  + G+     + G I           +V 
Sbjct: 14  EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVE 73

Query: 151 -----------LGG----------HPASIYHKTAGSKVGYMPQE-LAMFGELT----IKE 184
                       GG          + +    +    ++  M Q   A++G+ T    + E
Sbjct: 74  RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE 133

Query: 185 TLNFFGMIYGMDESIW----LFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK 240
            L   G  Y   E++     L +M + SH  ++ ++ R    LSGG+K+R+     +  +
Sbjct: 134 ALEEIG--YEGKEAVGRAVDLIEMVQLSH--RITHIARD---LSGGEKQRVVLARQLAKE 186

Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEANDASEVA-FLYKGR 298
           P L + DEP   +DP   K + + L+  V   G ++++T+ + E   D S+ A +L  G 
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246

Query: 299 IIAQDSPDGFKSKYSMPKLSDV 320
           I  + +PD   + + M  +S+V
Sbjct: 247 IKEEGTPDEVVAVF-MEGVSEV 267

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    A+  KP+++++DEPC  +DP+   ++ +L+     +  T+ + T  +
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNM 209

Query: 283 EEANDASE 290
           ++A   S+
Sbjct: 210 QQATRVSD 217

Length = 259

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL    A+   P++++ DEP   +DP+    + +L+     K   +I+T    
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221

Query: 283 EEANDASEVAFLYKGRII 300
           + A  +   A++Y G +I
Sbjct: 222 QAARVSDYTAYMYMGELI 239

Length = 265

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 36/229 (15%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-----GHPASIYH 160
           +L     ++K  E  V+LG   +G +TLLK I    N     I V G     G       
Sbjct: 76  ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS--NTDGFHIGVEGVITYDGITPEEIK 133

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGM-------IYGMDESIWLFQMRKY------ 207
           K     V Y  +    F  LT+ ETL+F            G+    +   +         
Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG 193

Query: 208 -SHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-----LVR--K 259
            SH          V+ +SGG+++R+S   A L   ++   D    G+D       +R  K
Sbjct: 194 LSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALK 253

Query: 260 RMWDLLQVFVGKGRTVIMTT-QYIEEANDA-SEVAFLYKGRIIAQDSPD 306
              ++L        T ++   Q  ++A +   +V  LY+G  I     D
Sbjct: 254 TSANILDT------TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 26/219 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNIS---QGEIWVLG----GHPA 156
            +   S  ++  E   L+G S +GK+    +I+GL     +    G I   G        
Sbjct: 25  AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84

Query: 157 SIYHKTAGSKVGYMPQELAMFG-------ELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
                  G+K+G + QE  M            + E L       G+  +    +  +   
Sbjct: 85  RQLRGVRGNKIGMIFQE-PMTSLNPLHTIGKQLAEVLRLH---RGLSRAAARARALELLE 140

Query: 210 VLKLPNLERPVK-Y---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
           ++ +P  E+ +  Y   LSGGQ++R+   +A+ ++P L+I DEP   +D  V+ ++ DLL
Sbjct: 141 LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLL 200

Query: 266 QVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ 302
           +    + G  ++  T  +      A  V  +  G I+  
Sbjct: 201 KELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239

Length = 534

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++ L     +   P++++LDEP   +DP   +++ + ++    +   +I+T    
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223

Query: 283 EEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316
           + A  +   A  + GR++ +   +     +S PK
Sbjct: 224 QAARISDRAALFFDGRLVEEGPTEQL---FSSPK 254

Length = 276

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV 275
           L      LSGGQ++RL     +  KP +++LDEP   +DP+   ++ +L+   + +  ++
Sbjct: 158 LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKEEYSI 216

Query: 276 IMTTQYIEEANDASE-VAFLYKGRIIAQD 303
           I+ T  +++A   S+  AF   G ++  D
Sbjct: 217 IIVTHNMQQALRVSDRTAFFLNGDLVEYD 245

Length = 268

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 23/139 (16%)

Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
           +   E   +LG +  GKTT +K + G+    +G    L              KV Y PQ 
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--------------KVSYKPQY 409

Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLKLPNL-ERPVKYLSGGQKRR 230
           ++   + T+++ L           S +     K      L L +L ERPV  LSGG+ +R
Sbjct: 410 ISPDYDGTVEDLL------RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQR 463

Query: 231 LSFTIAILHKPQLIILDEP 249
           ++   A+  +  L +LDEP
Sbjct: 464 VAIAAALSREADLYLLDEP 482

Length = 591

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++R+     +  KP +I+LDEP   +DP+   ++ ++L     +  T+I+ T  +
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSM 207

Query: 283 EEANDASE-VAFLYKGRII 300
            +A+  S+  AF   G +I
Sbjct: 208 HQASRISDKTAFFLTGNLI 226

Length = 252

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 53/185 (28%)

Query: 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA 175
                ++ G + +GK+T+L AI             LGG   S   + +G K G       
Sbjct: 20  EGSLTIITGPNGSGKSTILDAI----------GLALGGA-QSATRRRSGVKAGC------ 62

Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR--LSF 233
                 +   L F                                  LSGG+K    L+ 
Sbjct: 63  --IVAAVSAELIFT------------------------------RLQLSGGEKELSALAL 90

Query: 234 TIAILHKP--QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV 291
            +A+       L ILDE   G+DP   + + + +   + KG  VI+ T   E A  A ++
Sbjct: 91  ILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKL 150

Query: 292 AFLYK 296
             + K
Sbjct: 151 IHIKK 155

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGGQ++RL     +  +P +I++DEP   +DP+   ++ +L+Q  + K  ++I+ T  +
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYSIIIVTHNM 226

Query: 283 EEANDASE-VAFLYKGRIIAQDSPD 306
           ++A   S+  AF   G +   D  D
Sbjct: 227 QQAARISDKTAFFLNGYVNEYDDTD 251

Length = 271

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 23/45 (51%), Positives = 35/45 (77%)

Query: 60  EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
           E+E+EEEE+E +EE+E +E+EG+ EEEEE  E  N  +EE++ S+
Sbjct: 446 EEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSS 490

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL--GGHPASIY-------HKTAGSKVG 168
           E   ++G S +GK+TLL  + G      G    +   G    +Y        +   ++ G
Sbjct: 30  EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWG 89

Query: 169 YMPQE----LAM-------FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
           ++ Q     L M        GE  +      +G I    +  WL ++      +    ++
Sbjct: 90  FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQD-WLEEVE-----IDPTRID 143

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
              +  SGG ++RL     ++ +P+L+ +DEP  G+D  V+ R+ DLL+  V   G  VI
Sbjct: 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203

Query: 277 MTT 279
           + T
Sbjct: 204 IVT 206

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
           SGGQ++R++   A++ KP LIILDEP   +D  V+ ++  LL+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469

Length = 529

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 11/63 (17%)

Query: 40  FTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
           + I LWV            +EKE  +EE+E ++EE+++E+E   ++EEE DE +  EKEE
Sbjct: 21  YPIYLWVE---------KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEE--EKEE 69

Query: 100 LKP 102
            K 
Sbjct: 70  KKK 72

Length = 529

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 26/213 (12%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASIYHK 161
           LN+ SL     E   L+G S +GK+TLL++I  + +++      G I V  GH  +IY  
Sbjct: 21  LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGH--NIYSP 77

Query: 162 TAGS-----KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL 216
              +     ++G + Q+   F  ++I E + +   + G+ +   L +  + S  LK  ++
Sbjct: 78  RTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKS--LKGASI 134

Query: 217 ERPVK--------YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF 268
              VK         LSGGQ++R+     +   P++I+LDEP   +DP+   ++ + L + 
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LG 193

Query: 269 VGKGRTVIMTTQYIEEANDASE-VAFLYKGRII 300
           +    T+++ T+ +++A+  S+   F   G +I
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226

Length = 252

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
            VL      +   E   LLG + AGK+TL+K I G+     G +  +GG+P +       
Sbjct: 25  EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKA 83

Query: 165 SKVG-YM-PQELAMFGELTIKETLNFFGM 191
            ++G Y+ PQE  +F  L++KE +  FG+
Sbjct: 84  HQLGIYLVPQEPLLFPNLSVKENI-LFGL 111

Length = 510

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 36/191 (18%)

Query: 111 SLVVKRRE---FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV 167
           S  V+  E    F L+GA   G++ L+K + G    + G++  L G P  I       + 
Sbjct: 273 SFSVRAGEIVGLFGLVGA---GRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPRDAIRA 328

Query: 168 GYM--PQ---ELAMFGELTIKETLN--------FFGMIY--GMDESIWLFQMRKYSHVLK 212
           G M  P+      +    ++ + +N          G +     +       +R  +  +K
Sbjct: 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN--IK 386

Query: 213 LPNLERPVKYLSGG--QK----RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
            P+ E+ +  LSGG  QK    R LS  +      ++I+LDEP  G+D   +  +++++ 
Sbjct: 387 TPSREQLIMNLSGGNQQKAILGRWLSEDM------KVILLDEPTRGIDVGAKHEIYNVIY 440

Query: 267 VFVGKGRTVIM 277
               +G  V+ 
Sbjct: 441 ELAAQGVAVLF 451

Length = 501

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP 171
           L + + +   ++G +  GK+TL K   GL    +GEI +L G        +A S+  Y  
Sbjct: 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI-LLDGAAV-----SADSRDDYRD 416

Query: 172 QELAMFGELTIKETL--NFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPVKYLSGGQK 228
              A+F +  + + L     G    +D +    Q  + +  +K+ +        LS GQ+
Sbjct: 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476

Query: 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVIMTT---QYIEE 284
           +RL+   A L    +++ DE     DP  ++  + +LL     +G+T+I+ +   QY E 
Sbjct: 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536

Query: 285 AN 286
           A+
Sbjct: 537 AD 538

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 64  EEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
             EE   ++EEE+K++E K+EEEEEA  G
Sbjct: 73  AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly interact with rRNA. Archaeal L12p is believed to function in a similar fashion. However, hybrid ribosomes containing the large subunit from E. coli with an archaeal stalk are able to bind archaeal and eukaryotic elongation factors but not bacterial elongation factors. In several mesophilic and thermophilic archaeal species, the binding of 23S rRNA to protein L11 and to the L10/L12p pentameric complex was found to be temperature-dependent and cooperative. Length = 106

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 44.4 bits (106), Expect = 9e-05
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 25/140 (17%)

Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
           +   E   ++G +  GKTT  K + G+    +GE+                 K+ Y PQ 
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-------------DPELKISYKPQY 408

Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK---LPNL-ERPVKYLSGGQKR 229
           +    + T+++ L           S +       S ++K   L  L ++ VK LSGG+ +
Sbjct: 409 IKPDYDGTVEDLLRSITDDL--GSSYY------KSEIIKPLQLERLLDKNVKDLSGGELQ 460

Query: 230 RLSFTIAILHKPQLIILDEP 249
           R++    +     L +LDEP
Sbjct: 461 RVAIAACLSRDADLYLLDEP 480

Length = 590

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           LSGG+++RL+   A+L  P ++ILDE    +D     ++   L   + KGRT  +    +
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRL 530

Query: 283 EEANDASEVAFLYKGRII 300
               +A  +     GR++
Sbjct: 531 STVRNADRILVFDNGRVV 548

Length = 588

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 28/160 (17%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG------GHPASIYH 160
           L+  +L V       L+G + AGK+T++K + G+     G I  LG      G  +S   
Sbjct: 20  LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS--- 76

Query: 161 KTAGSKVGYMPQELAMFGELTIKETL-------NFFGMIYGMDESIWLFQMRKYSHVLKL 213
           + AG  +G + QEL +  +LTI E +       N FG I       W     +   +L  
Sbjct: 77  QEAG--IGIIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKLLAR 128

Query: 214 PNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
            NL    ++ V  LS G+++ +     +  + ++II+DEP
Sbjct: 129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP 168

Length = 501

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIY--H 160
           +L + S ++K     +LLG  S+GKTTLL A+ G  + S    GEI    G+  + +   
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPR 238

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNF 188
           KT+     Y+ Q     G +T+KETL+F
Sbjct: 239 KTS----AYISQNDVHVGVMTVKETLDF 262

Length = 1470

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 60/260 (23%), Positives = 107/260 (41%), Gaps = 30/260 (11%)

Query: 99  ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI 158
           + K S   L++ +L +       ++G +  GKT+L+ A++G  + ++    V+ G     
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG----- 679

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL- 216
                   V Y+PQ   +F   T++E +  FG  +  +       +    H L L P   
Sbjct: 680 -------SVAYVPQVSWIFNA-TVRENI-LFGSDFESERYWRAIDVTALQHDLDLLPGRD 730

Query: 217 -----ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK 271
                ER V  +SGGQK+R+S   A+     + I D+P   +D  V  +++D       K
Sbjct: 731 LTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK 789

Query: 272 GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS-PDGFKSKYSMPKLSDVFYKI------ 324
           G+T ++ T  +        +  + +G I  + +  +  KS     KL +   K+      
Sbjct: 790 GKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEV 849

Query: 325 -TNDDGTSSGPPAETSKAEE 343
            TND+      P  T    E
Sbjct: 850 NTNDENILKLGPTVTIDVSE 869

Length = 1495

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 21/227 (9%)

Query: 104  NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
            ++VL + ++ +   E   ++G + AGK++L   +  +   ++GEI + G + A I     
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358

Query: 164  GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----L 216
              K+  +PQ+  +F   +++  L+ F      DE +W      +    V  LP+      
Sbjct: 1359 RFKITIIPQDPVLFSG-SLRMNLDPFSQY--SDEEVWWALELAHLKTFVSALPDKLDHEC 1415

Query: 217  ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG---KGR 273
                + LS GQ++ +    A+L K ++++LDE    VD        +L+Q  +    +  
Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD----NLIQSTIRTQFEDC 1471

Query: 274  TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK----YSMPK 316
            TV+     +    D + V  L KG +    +P     +    YSM K
Sbjct: 1472 TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 22/175 (12%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM 170
           +L +KR E   L+G + +GK+TL   + GL     GEI +L G P      TA     Y 
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI-LLDGKPV-----TAEQPEDYR 396

Query: 171 PQELAMFGELTIKETLNFFGMIYGMDE--------SIWLFQMRKYSHVLKLPNLERPVKY 222
               A+F +       + F  + G +           WL ++ K +H L+L +       
Sbjct: 397 KLFSAVFTDF------HLFDQLLGPEGKPANPALVEKWLERL-KMAHKLELEDGRISNLK 449

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVI 276
           LS GQK+RL+  +A+  +  +++LDE     DP  R+  +  LL +    G+T+ 
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIF 504

Length = 547

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 66/244 (27%)

Query: 76  EKEDEGKKEEEEEADEGKNTEKEELKPSNV-VLNNCSLVVKRREFFVLLGASSAGKTTLL 134
           E  D+GKK ++ +  + KN         +V +  + +  +   + +  +G S  GK+T+L
Sbjct: 369 ENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428

Query: 135 KAIVGLKNISQGEIWVLGGHP-ASIYHKTAGSKVGYMPQELAMFGELTIKETLNF----- 188
           K I  L + ++G+I +   H    I  K   SK+G + Q+  +F   +IK  + +     
Sbjct: 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSL 487

Query: 189 ----------------------------------FGMIYGMDESIWLFQMRKYSHVLK-- 212
                                                +    +S  L +MRK    +K  
Sbjct: 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDS 547

Query: 213 -LPNLER-----------PVKY----------LSGGQKRRLSFTIAILHKPQLIILDEPC 250
            + ++ +           P KY          LSGGQK+R+S   AI+  P+++ILDE  
Sbjct: 548 EVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607

Query: 251 VGVD 254
             +D
Sbjct: 608 SSLD 611

Length = 1466

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYH--KT 162
           L+N SL V+  E   L G + AGK+TL+K + G+      +GEI +  G      +   T
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDT 79

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFG---MIYG-MDESIWLFQMRKYSHVLKLP-NLE 217
             + +  + QELA+  EL++ E + F G      G MD      + +K    LKL  N  
Sbjct: 80  ERAGIAIIHQELALVKELSVLENI-FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
            PV  L  GQ++ +    A+  + +L+ILDEP
Sbjct: 139 TPVGNLGLGQQQLVEIAKALNKQARLLILDEP 170

Length = 506

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 18/30 (60%), Positives = 26/30 (86%)

Query: 62  EKEEEEDEGKEEEEEKEDEGKKEEEEEADE 91
           + EEEE+E +EEEEE+E+E ++EEEEE +E
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 41/173 (23%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           L N  + +      V+ G S +GK+TL+   +     + G+  ++   P           
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPK---------- 56

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
             +   +L    +L   + L   G+ Y                   L  L + +  LSGG
Sbjct: 57  --FSRNKLIFIDQL---QFLIDVGLGY-------------------LT-LGQKLSTLSGG 91

Query: 227 QKRRLSFT--IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           + +R+     +       L ILDEP  G+      ++ ++++  +  G TVI+
Sbjct: 92  ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 17/29 (58%), Positives = 25/29 (86%)

Query: 60  EKEKEEEEDEGKEEEEEKEDEGKKEEEEE 88
           + E+EEEE+E +EEEEE+E+E ++EEEE 
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEEN 890

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 62  EKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKP 102
           +     D G  EEEE+E+E ++EEEEE +E +  E+E  +P
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 60  EKEKEEEEDEGKEEEEEKED--EGKKEEEEEADEGKNTEKEELKPSNVVLNNCS 111
           E+E++EEE E  E+ E++E+  E ++EEEE+ ++  + +  E K  N + N+  
Sbjct: 54  EEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107

This family consists of several Plasmodium falciparum SPAM (secreted polymorphic antigen associated with merozoites) proteins. Variation among SPAM alleles is the result of deletions and amino acid substitutions in non-repetitive sequences within and flanking the alanine heptad-repeat domain. Heptad repeats in which the a and d position contain hydrophobic residues generate amphipathic alpha-helices which give rise to helical bundles or coiled-coil structures in proteins. SPAM is an example of a P. falciparum antigen in which a repetitive sequence has features characteristic of a well-defined structural element. Length = 164

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 43/194 (22%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           LN  +  +       ++G    GK++LL A++   +  +G + + G              
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------S 700

Query: 167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK----LPNLE----- 217
           V Y+PQ+ A     +++E +  FG              + Y  VL+    LP+LE     
Sbjct: 701 VAYVPQQ-AWIQNDSLRENI-LFGK---------ALNEKYYQQVLEACALLPDLEILPSG 749

Query: 218 -------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                  + V  LSGGQK+R+S   A+     + + D+P   VD  V K +++ +    G
Sbjct: 750 DRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808

Query: 271 --KGRTVIMTTQYI 282
             K +T I+ T  I
Sbjct: 809 VLKNKTRILVTHGI 822

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE 173
           +   E   +LG +  GKTT +K + G+    +G+I            +     V Y PQ 
Sbjct: 22  ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI------------EIELDTVSYKPQY 69

Query: 174 LAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS 232
           +    E T+++ L    +         +  ++ K   + ++  L+R V  LSGG+ +R++
Sbjct: 70  IKADYEGTVRDLL--SSITKDFYTHPYFKTEIAKPLQIEQI--LDREVPELSGGELQRVA 125

Query: 233 FTIAILHKPQLIILDEPCVGVD 254
               +     + +LDEP   +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 18/184 (9%)

Query: 111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG-- 168
           S  ++  +   ++G + +GK+TL K + G+   + GEI ++  HP  ++      +    
Sbjct: 33  SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHP--LHFGDYSFRSKRI 89

Query: 169 ---YMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPNL-----ERP 219
              +     ++   L I + L+F   +   ++      + ++    L++  L        
Sbjct: 90  RMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ---RRKQIFETLRMVGLLPDHANYY 146

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMT 278
              L+ GQK+R++   A++ +P++II DE    +D  +R ++ +L L++   +G + I  
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206

Query: 279 TQYI 282
           TQ+I
Sbjct: 207 TQHI 210

Length = 267

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 57  YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNV 105
             +EK +++ E+E KE++++     KKEEEEE ++ K  E++E +    
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Length = 482

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 28/223 (12%)

Query: 100 LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGG-- 153
           L+ +  +++  SL ++R     L+G S +GK+    A +G+       + G + +L G  
Sbjct: 12  LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKP 70

Query: 154 -HPASIYHKTAGSKVGYMPQELAMFGEL-TI----KETLNFFGMIYGMDESIWLFQMRKY 207
             P ++  +   +    M    + F  L T+    +ET    G     D       +   
Sbjct: 71  VAPCALRGRKIAT---IMQNPRSAFNPLHTMHTHARETCLALG-KPADDA-----TLTAA 121

Query: 208 SHVLKLPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
              + L N  R +K     +SGG  +R+   +A+L +   II DEP   +D + + R+ D
Sbjct: 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181

Query: 264 LLQVFVGK-GRTVIMTTQYIE-EANDASEVAFLYKGRIIAQDS 304
           LL+  V K    +++ T  +   A  A +VA +  GRI+ Q  
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224

Length = 254

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 57/171 (33%)

Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM----------- 170
           LLG + AGK+TL+K + G      GEI +             G K+GY            
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGL-----------AKGIKLGYFAQHQLEFLRAD 391

Query: 171 -----------PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERP 219
                      PQEL    E  +++ L  FG           FQ  K +           
Sbjct: 392 ESPLQHLARLAPQEL----EQKLRDYLGGFG-----------FQGDKVTE---------E 427

Query: 220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
            +  SGG+K RL   + +  +P L++LDEP   +D  +R+ + + L  F G
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG 478

Length = 638

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 64 EEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
               E +EEEEE+E+E ++E EEEA  G
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 60  EKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
           EKE EE E+E +EE+EE  DE +KE EE+ +   N EKE   PS
Sbjct: 85  EKEDEESEEENEEEDEESSDENEKETEEKTES--NVEKEITNPS 126

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
           LSGG+++R+   +A+L +P+L+I DEP   +D  V+ ++  LL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLL 199

Length = 529

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 27/183 (14%)

Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIW--VLGGHPASIYH-------KTAGSKVG 168
           E   ++G S +GKTTLLK I G      G +   +  G P  +Y        +   ++ G
Sbjct: 33  EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92

Query: 169 YMPQE----LAM-------FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
           ++ Q     L M        GE  +      +G I   +   WL ++      + L  ++
Sbjct: 93  FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-EAQDWLEEVE-----IDLDRID 146

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
              +  SGG ++RL     ++ +P+L+ +DEP  G+D  V+ R+ DLL+  V + G  V+
Sbjct: 147 DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206

Query: 277 MTT 279
           + T
Sbjct: 207 IVT 209

Length = 258

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
           LNN SL +   E F ++GAS AGK+TL++ I  L+  + G + V G
Sbjct: 21  LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG 66

Length = 343

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 48/201 (23%)

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----------- 157
             S  ++  +   ++G + +GK+TL K + G+   + GE+ ++  HP             
Sbjct: 31  PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHFGDYSYRSQRI 89

Query: 158 --IYHKTAGS-----KVGYM---PQEL-----AMFGELTIKETLNFFGMIYGMDESIWLF 202
             I+   + S     ++  +   P  L         E  I ETL   G++          
Sbjct: 90  RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--------- 140

Query: 203 QMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW 262
                 H    P++      L+ GQK+RL    A++ +P++II DE    +D  +R ++ 
Sbjct: 141 -----DHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189

Query: 263 DL-LQVFVGKGRTVIMTTQYI 282
           +L L++   +G + I  TQ++
Sbjct: 190 NLMLELQEKQGISYIYVTQHL 210

Length = 267

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 213 LPNLERPVKYLSGGQKRRLSFTIAILH---KPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
           LP L RP+  LSGG+ +RL     +L    KP L +LDEP  G+     K +  +LQ   
Sbjct: 801 LP-LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLT 859

Query: 270 GKGRTVIM 277
            +G TV++
Sbjct: 860 HQGHTVVI 867

Length = 1809

>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein (DUF2052)

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 57  YTLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPS 103
             LE  +++EE+E  EEEEE  +E  +EEEEE   G   E+EE    
Sbjct: 69  ARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGD 115

This entry is of sequences of two conserved domains separated by a region of low complexity, spanning some 200 residues. The function is unknown. Length = 178

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 37/205 (18%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK 166
           L+N ++ +   +  +++G    GK++LL AI+G     +G++     + +    +   S+
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 167 ----VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL------ 216
               V Y  Q+  +    T++E + F         S   F  ++Y  V    +L      
Sbjct: 77  NRYSVAYAAQKPWLLNA-TVEENITF--------GSP--FNKQRYKAVTDACSLQPDIDL 125

Query: 217 ----------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD--L 264
                     ER +  LSGGQ++R+    A+     ++ LD+P   +D  +   +    +
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184

Query: 265 LQVFVGKGRTVIMTT---QYIEEAN 286
           L+      RT+++ T   QY+  A+
Sbjct: 185 LKFLQDDKRTLVLVTHKLQYLPHAD 209

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
           +P+  LSGGQK R++F      KP +++LDEP
Sbjct: 623 QPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654

Length = 718

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 64  EEEEDEGKEEEEEKEDEGKKEEEEEADEG 92
                  +++EEE+E+E K+E EEEA  G
Sbjct: 72  AAAAAAEEKKEEEEEEEEKEESEEEAAAG 100

Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
KOG0059|consensus	885		100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
KOG0058|consensus	716		100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
KOG0057|consensus	591		100.0
KOG0055|consensus	1228		100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
KOG0055|consensus	1228		100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
KOG0061|consensus	613		100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
KOG0056|consensus	790		100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
KOG0054|consensus	1381		100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
KOG0054|consensus	1381		100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.98
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.97
KOG0065|consensus	1391		99.97
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.97
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.97
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.96
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.96
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.95
KOG0927|consensus	614		99.94
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.94
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.94
KOG0927|consensus	614		99.94
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.94
COG4178	604	ABC-type uncharacterized transport system, permeas	99.93
KOG0062|consensus	582		99.92
KOG2355|consensus	291		99.91
KOG0062|consensus	582		99.91
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.9
KOG0066|consensus	807		99.9
KOG0060|consensus	659		99.89
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.88
KOG0065|consensus	1391		99.88
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.87
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.86
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.86
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.86
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.85
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.85
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.85
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.84
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.83
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.83
KOG0064|consensus	728		99.83
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.82
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.81
KOG0066|consensus	807		99.8
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.79
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.76
KOG0063|consensus	592		99.72
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.72
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.68
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.63
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.61
PRK00064	361	recF recombination protein F; Reviewed	99.59
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.55
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.52
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.52
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.52
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.5
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.49
KOG0063|consensus	592		99.47
cd01128	249	rho_factor Transcription termination factor rho is	99.46
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.45
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.44
PHA02562	562	46 endonuclease subunit; Provisional	99.44
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.41
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.4
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.39
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.39
PRK13695	174	putative NTPase; Provisional	99.37
PRK10869	553	recombination and repair protein; Provisional	99.37
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.36
PRK03918	880	chromosome segregation protein; Provisional	99.35
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.34
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.31
PRK01156	895	chromosome segregation protein; Provisional	99.31
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.28
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.26
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	99.24
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.2
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.2
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.14
PRK02224	880	chromosome segregation protein; Provisional	99.08
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.05
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.05
PRK06067	234	flagellar accessory protein FlaH; Validated	99.01
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.0
COG3910	233	Predicted ATPase [General function prediction only	99.0
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.95
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.95
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.93
smart00382	148	AAA ATPases associated with a variety of cellular	98.91
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.89
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.84
TIGR00611	365	recf recF protein. All proteins in this family for	98.84
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.84
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.8
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.8
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.77
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.75
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.69
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.66
PRK06315	442	type III secretion system ATPase; Provisional	98.66
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.63
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.62
PRK14079	349	recF recombination protein F; Provisional	98.6
PRK00300	205	gmk guanylate kinase; Provisional	98.59
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.56
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.55
PRK09825	176	idnK D-gluconate kinase; Provisional	98.53
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.5
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.49
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.47
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.44
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.42
PRK08149	428	ATP synthase SpaL; Validated	98.41
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.37
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.37
PRK10416	318	signal recognition particle-docking protein FtsY;	98.36
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.33
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.33
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.32
TIGR03061	164	pip_yhgE_Nterm YhgE/Pip N-terminal domain. This fa	98.32
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.3
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.29
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.29
PRK09862	506	putative ATP-dependent protease; Provisional	98.27
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.25
PRK01889	356	GTPase RsgA; Reviewed	98.25
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.21
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.2
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.19

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-61  Score=458.48  Aligned_cols=230  Identities=26%  Similarity=0.370  Sum_probs=212.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC-chhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-YHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-~~~~~r~~  166 (457)
                      ++|+++|++|+||+  +.||+|||++|++||+++|+||||||||||||||.||.+|++|+|+++|.++... +....|++
T Consensus         1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence            47999999999999  9999999999999999999999999999999999999999999999999776432 34567899


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +|+|||+++|||++||.||+.+.. ...++++++.++++.++|+.+||.+ ++.+|.+|||||||||+|||||+.+|+++
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm  158 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM  158 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence            999999999999999999998854 4578999999999999999999965 89999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      ++|||||+|||....++.+.++.++++|+|.|+|||+|.+|+. ||||++|++|+++++|+|++++.+...+.+.+
T Consensus       159 LFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~  234 (240)
T COG1126         159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ  234 (240)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHH
Confidence            9999999999999999999999999999999999999999976 89999999999999999999998765544443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-59  Score=454.15  Aligned_cols=231  Identities=28%  Similarity=0.436  Sum_probs=216.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|+||+|++  +.||+|+||+|++||+++|+|||||||||+||||.+++.|++|+|+++|+++...+...+|++||
T Consensus         1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG   78 (309)
T COG1125           1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG   78 (309)
T ss_pred             CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence            6899999999998  99999999999999999999999999999999999999999999999999998887778899999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC---CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN---LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |+-|...|||++||.||+.+...+.|+++++++++++++++.++|+.   ++|+|++|||||||||.+||||+.+|++|+
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL  158 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL  158 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence            99999999999999999999999999999999999999999999952   799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      +||||++|||.+|.++-+.+..+ ++-|+|||+|||||+||.. +|||++|++|+++..++|++++.++..+.+++.+
T Consensus       159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~  236 (309)
T COG1125         159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF  236 (309)
T ss_pred             ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHh
Confidence            99999999999999999885554 4559999999999999965 9999999999999999999999887655555444

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-58  Score=432.28  Aligned_cols=236  Identities=25%  Similarity=0.411  Sum_probs=222.5

Q ss_pred             ceEEEeeEEEeCCCCce-eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         89 ADEGKNTEKEELKPSNV-VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~-aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      |+++.+++|+|+.  ++ +++||||++++||++||+|||||||||+||||++++.|++|.|+++|.+....+ ...|++|
T Consensus         1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~I   77 (245)
T COG4555           1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKI   77 (245)
T ss_pred             CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhc
Confidence            6899999999998  55 999999999999999999999999999999999999999999999998876543 4578899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |.++.+..+|..||++|||.|++++++++..+++++++++.+.|+|.. +|+++.+||.||||||+|||||+|+|++++|
T Consensus        78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl  157 (245)
T COG4555          78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVL  157 (245)
T ss_pred             ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence            999988999999999999999999999999999999999999999955 8999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT  325 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~~  325 (457)
                      ||||||||..+++.+.+.+..++++|++||++||.|+|++. ||||+++++|+++..|+++++..+....+++++|....
T Consensus       158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f~~~l  237 (245)
T COG4555         158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFAL  237 (245)
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHHHHhh
Confidence            99999999999999999999988889999999999999985 99999999999999999999999888899999998665


Q ss_pred             cC
Q psy10858        326 ND  327 (457)
Q Consensus       326 ~~  327 (457)
                      ..
T Consensus       238 ~~  239 (245)
T COG4555         238 KL  239 (245)
T ss_pred             cC
Confidence            44

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.8e-57  Score=451.72  Aligned_cols=221  Identities=38%  Similarity=0.655  Sum_probs=205.5

Q ss_pred             CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .+++++|++|+|+ +  +.||+||||+|++||++||+||||||||||||+|+|+++|++|+|.++|.++... ....+++
T Consensus         3 ~~i~~~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~   79 (293)
T COG1131           3 EVIEVRNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRR   79 (293)
T ss_pred             ceeeecceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhh
Confidence            4688999999999 7  8999999999999999999999999999999999999999999999999887653 3456788


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |||+||++.+|+.+||+|||.|++.+++.+.....++++++++.++|.. .++++++||+||||||+||+||+++|++||
T Consensus        80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli  159 (293)
T COG1131          80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI  159 (293)
T ss_pred             eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999999999999876666778999999999965 578899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKG-RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g-~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+||||.++..||++++.++++| +||++|||.+++++. ||||++|++|++++.|+++++...
T Consensus       160 LDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         160 LDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             ECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            999999999999999999988888776 899999999999986 999999999999999999987654

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.2e-57  Score=446.08  Aligned_cols=233  Identities=24%  Similarity=0.361  Sum_probs=212.9

Q ss_pred             ceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhh
Q psy10858         89 ADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~  162 (457)
                      ||++++++|.|...   ...||+||||+|++|||+||+|.||||||||+|||.+|.+|++|+|.++|+++...+   ...
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            68999999999862   257999999999999999999999999999999999999999999999998876543   345


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      .|++||++||+++|+...||++|++|...+.|++++++++|+.++++.+||++ .+++|.+|||||||||+|||||+.+|
T Consensus        81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P  160 (339)
T COG1135          81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP  160 (339)
T ss_pred             HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence            68899999999999999999999999999999999999999999999999965 79999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      +|||.|||||+|||...+.|+++++.+ ++-|.||+++||.|+.++. ||||++|++|+|++.|+..+++..+..+ +.+
T Consensus       161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~-~t~  239 (339)
T COG1135         161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA-ITQ  239 (339)
T ss_pred             CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH-HHH
Confidence            999999999999999999999997665 5569999999999999976 9999999999999999999999876433 333


Q ss_pred             HHH
Q psy10858        320 VFY  322 (457)
Q Consensus       320 ~f~  322 (457)
                      .|.
T Consensus       240 ~fi  242 (339)
T COG1135         240 EFI  242 (339)
T ss_pred             HHH
Confidence            344

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.3e-56  Score=425.60  Aligned_cols=233  Identities=29%  Similarity=0.404  Sum_probs=212.2

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~  163 (457)
                      ++.|++++|+++||+  +++++||||+|++||+++|+||||+|||||||+|.|+++|++|+|+++|+++...+.   ...
T Consensus         6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i   83 (263)
T COG1127           6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI   83 (263)
T ss_pred             cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence            578999999999999  999999999999999999999999999999999999999999999999999865543   246


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ++++|++||+-+||..|||+||+.|..+-+ +++++.+++.+..-++.+||. . ++++|++|||||++|++||||++.+
T Consensus        84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald  163 (263)
T COG1127          84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD  163 (263)
T ss_pred             HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence            789999999999999999999999987654 688888999998899999995 3 7999999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS  318 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~  318 (457)
                      |+||++||||+||||.+...|-++|+.+++. |.|+++||||++++.. |||++++.+|+|++.|+++++.+. ..+.+.
T Consensus       164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s-d~P~v~  242 (263)
T COG1127         164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS-DDPWVR  242 (263)
T ss_pred             CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC-CCHHHH
Confidence            9999999999999999999999998877665 9999999999999976 899999999999999999999874 345555


Q ss_pred             HHHH
Q psy10858        319 DVFY  322 (457)
Q Consensus       319 ~~f~  322 (457)
                      +.|.
T Consensus       243 qf~~  246 (263)
T COG1127         243 QFFN  246 (263)
T ss_pred             HHhc
Confidence            5543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=1.5e-55  Score=443.58  Aligned_cols=222  Identities=32%  Similarity=0.535  Sum_probs=205.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+++++||+|+|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.... ...+++
T Consensus         5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~   81 (306)
T PRK13537          5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR   81 (306)
T ss_pred             CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence            368999999999997  88999999999999999999999999999999999999999999999999875433 235678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |||+||++.+|+.+||+||+.+++..++.+..+..+++.++++.+++.. .++++++|||||||||+||+||+++|++||
T Consensus        82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll  161 (306)
T PRK13537         82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV  161 (306)
T ss_pred             EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence            9999999999999999999999888888877767778889999999965 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+||||.+++.+|++++.++++|+|||++||++++++. ||||++|++|++++.|+++++...
T Consensus       162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999999988877779999999999999975 999999999999999999998654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-56  Score=447.87  Aligned_cols=222  Identities=28%  Similarity=0.394  Sum_probs=208.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++||+|+||+  ..||+++||+|++||+++|+||||||||||||||+||.+|++|+|+++|++++...++  .|.|
T Consensus         2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~i   77 (338)
T COG3839           2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGI   77 (338)
T ss_pred             cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCE
Confidence            36899999999998  4499999999999999999999999999999999999999999999999999875543  4789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |+|||+.+|||+|||+||+.|..++.+++++++.++++++++.+++.+ ++++|.+|||||||||++||||+.+|++++|
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~  157 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL  157 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence            999999999999999999999999999999999999999999999976 8999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+|+||+..|..+...++.+.+ -|.|+|++|||-.||.. +|||++|++|+|...|+|.++.+++.
T Consensus       158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~  226 (338)
T COG3839         158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA  226 (338)
T ss_pred             cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence            999999999999999988766654 49999999999999976 99999999999999999999988754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.2e-55  Score=432.36  Aligned_cols=230  Identities=27%  Similarity=0.359  Sum_probs=207.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++++++||+++|++  +.+|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++...+.++..+++
T Consensus         1 ~~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           1 MMLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             CeeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            36899999999998  9999999999999999999999999999999999999999999999999999887777888999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhh----cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMI----YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l----~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ||+||.+...+.+||+|.+.++..-    ++...++..+.+.++++.+++.+ +++.+.+|||||||||.|||||+++|+
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~  158 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP  158 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence            9999999888899999999876432    23223444557888999999965 799999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHH
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDV  320 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~  320 (457)
                      +|+||||||.||+..+.+++++++.+. ++|+|||+|+||++.|. .||++++|++|++++.|+|+++++.   +.+.++
T Consensus       159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~---e~l~~V  235 (258)
T COG1120         159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREV  235 (258)
T ss_pred             EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH---HHHHHH
Confidence            999999999999999999999977765 66999999999999986 5999999999999999999998864   677777


Q ss_pred             HH
Q psy10858        321 FY  322 (457)
Q Consensus       321 f~  322 (457)
                      |.
T Consensus       236 yg  237 (258)
T COG1120         236 YG  237 (258)
T ss_pred             hC
Confidence            75

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-55  Score=449.54  Aligned_cols=228  Identities=28%  Similarity=0.398  Sum_probs=207.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++++++|++|+||+  ..||+||||+|++||+++|+||||||||||||||+|+..|++|+|+++|+++...+.  .+|.|
T Consensus         4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~i   79 (352)
T COG3842           4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPI   79 (352)
T ss_pred             ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhccc
Confidence            68999999999997  999999999999999999999999999999999999999999999999999987543  35789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |+|||+.+|||+|||+||+.|+.+..+ .+++++.+++.++++.++|.. .+++|.+|||||||||+|||||+.+|++||
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL  159 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL  159 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence            999999999999999999999998555 455678899999999999965 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      ||||.|+||...|.++...++.+ ++.|.|.|++|||-+||.. +|||++|++|+|...|+|+++..++....+.+
T Consensus       160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~  235 (352)
T COG3842         160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVAD  235 (352)
T ss_pred             hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHH
Confidence            99999999999999998875554 5569999999999999975 89999999999999999999988765444433

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.2e-55  Score=422.54  Aligned_cols=205  Identities=29%  Similarity=0.429  Sum_probs=191.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+++++++++.|+.  ..||+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++..     +...+
T Consensus         2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCCE
Confidence            46899999999998  999999999999999999999999999999999999999999999999988732     35789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |||||++.|+|.+||.||+.+.....+.++++..+++.++++.+||.. .+++|++|||||||||+|||||+++|++|+|
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl  154 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL  154 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999999999999888888888889999999999965 7999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC--CeE
Q psy10858        247 DEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK--GRI  299 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~--GkI  299 (457)
                      |||+++||..+|..+.+. ++.+.+.++||++||||++||-. +|||++|.+  |+|
T Consensus       155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i  211 (248)
T COG1116         155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI  211 (248)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence            999999999999999998 66677789999999999999965 999999998  445

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=3.5e-54  Score=439.87  Aligned_cols=222  Identities=32%  Similarity=0.519  Sum_probs=203.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+|+++||+|+|++  +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.
T Consensus        39 ~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~  115 (340)
T PRK13536         39 TVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR  115 (340)
T ss_pred             ceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhcc
Confidence            457999999999998  88999999999999999999999999999999999999999999999999875432 345678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+||++.+++.+||.||+.+++..++.+..+..+++.++++.++|.. .++++++|||||||||+||+||+++|++||
T Consensus       116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi  195 (340)
T PRK13536        116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI  195 (340)
T ss_pred             EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999998888777766666677788899999965 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+||||.+++.+|++++.++++|+|||+|||++++++. ||||++|++|++++.|+++++.+.
T Consensus       196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            999999999999999999988877779999999999999975 999999999999999999998754

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.9e-55  Score=419.82  Aligned_cols=221  Identities=26%  Similarity=0.478  Sum_probs=210.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      +++++++|+|+||+  +.||+|+||+|++|+++|++|+|||||||+++||.|+++|++|+|.|+|+++..    ..+.+|
T Consensus         1 ~~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI   74 (300)
T COG4152           1 MALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI   74 (300)
T ss_pred             CceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence            47899999999999  999999999999999999999999999999999999999999999999998864    345789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+|.+..||+.+||.|.|.|++++.||++.++++++..+++++++.. ..+++.+||.|++||+.+..|++|+|+++||
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL  154 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL  154 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence            999999999999999999999999999999999999999999999954 7899999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM  314 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~  314 (457)
                      |||+|||||++.+.+.+.+..++++|.|||+|||.|+.++. ||++++|++|+.+..|+.+++++.++.
T Consensus       155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk  223 (300)
T COG4152         155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK  223 (300)
T ss_pred             cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence            99999999999999999988889999999999999999976 999999999999999999999887654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-53  Score=434.43  Aligned_cols=225  Identities=22%  Similarity=0.302  Sum_probs=203.3

Q ss_pred             ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh
Q psy10858         89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~  163 (457)
                      ||+++|++|+|+.+  ...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++......   ..
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            58999999999632  25799999999999999999999999999999999999999999999999988654322   24


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +++|||+||++.+++.+||+||+.+.....+.++++..+++.++++.++|.+ .++++.+|||||||||+|||||+.+|+
T Consensus        81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~  160 (343)
T TIGR02314        81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            6789999999999999999999998877777777777888999999999965 799999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      +||||||||+|||.+++.++++++.+.++ |.|||++||+++++.. ||||++|++|++++.|++++++....
T Consensus       161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~  233 (343)
T TIGR02314       161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK  233 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCC
Confidence            99999999999999999999998877654 9999999999999965 99999999999999999999986543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-53  Score=434.21  Aligned_cols=221  Identities=27%  Similarity=0.391  Sum_probs=202.8

Q ss_pred             ceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         89 ADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        89 ~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      +|+++|++++| ++  +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .++.|
T Consensus         3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP--ADRDI   78 (356)
T ss_pred             EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            68999999999 66  789999999999999999999999999999999999999999999999998865432  24789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |||||++.+|+.+||+||+.|..+..+.++.+..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++|||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL  158 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF  158 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999999999877777777777788999999999965 7999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||||++||+..++.+++.++.+.++ |+|+|+||||++++.. |||+++|++|++++.|+++++.++..
T Consensus       159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~  227 (356)
T PRK11650        159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA  227 (356)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence            9999999999999999997776554 9999999999999965 99999999999999999999987643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.9e-53  Score=408.36  Aligned_cols=211  Identities=29%  Similarity=0.404  Sum_probs=190.7

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~  162 (457)
                      +++++||+|.|+.+.  ..||++|||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|.++...+.    ..
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            478999999997532  479999999999999999999999999999999999999999999999988875542    23


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCC-CCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLE-RPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~-~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ++++|||+||+++|.+++||.||+.+...+.+.+.....+++..+++.++|. ..+ ++|.+|||||||||+|||||+++
T Consensus        81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~  160 (226)
T COG1136          81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN  160 (226)
T ss_pred             HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999988888877666677788899999996 444 88999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEANDASEVAFLYKGRI  299 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~~dri~im~~GkI  299 (457)
                      |++|+.||||.+||+.+.+.+++++..+. +.|+|||+||||.+.|..|||++.|++|++
T Consensus       161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI  220 (226)
T ss_pred             CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence            99999999999999999999999977764 559999999999999999999999999994

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-53  Score=414.22  Aligned_cols=226  Identities=29%  Similarity=0.396  Sum_probs=196.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++|+++|++++|++  ..||+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++....   ..+.+|
T Consensus         3 ~~i~v~nl~v~y~~--~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---~~~~~I   77 (254)
T COG1121           3 PMIEVENLTVSYGN--RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---RKRLRI   77 (254)
T ss_pred             cEEEEeeeEEEECC--EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc---ccCCeE
Confidence            57999999999997  5799999999999999999999999999999999999999999999999876542   124789


Q ss_pred             EEEcCCCCC--CCCCCHHHHHHHhhhh----cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        168 GYMPQELAM--FGELTIKETLNFFGMI----YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       168 GyvpQ~~~L--~~~lTV~EnL~~~~~l----~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      |||||...+  -..+||+|.+.++...    ++...+..+++++++++.+++.+ .++++++|||||+|||.|||||+.+
T Consensus        78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~  157 (254)
T COG1121          78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN  157 (254)
T ss_pred             EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence            999996643  2347999999875321    22223344788999999999965 7999999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      |++|+|||||+|+|+.++..|+++++.++++|+||++||||++.+.. +|+|++| ++++++.|+|+++.+.   +.+..
T Consensus       158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~---~~l~~  233 (254)
T COG1121         158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE---ENLEK  233 (254)
T ss_pred             CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH---HHHHH
Confidence            99999999999999999999999999998889999999999999965 9999999 7889999999998754   56666


Q ss_pred             HHH
Q psy10858        320 VFY  322 (457)
Q Consensus       320 ~f~  322 (457)
                      +|.
T Consensus       234 ~~g  236 (254)
T COG1121         234 AFG  236 (254)
T ss_pred             HhC
Confidence            665

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.3e-53  Score=432.10  Aligned_cols=222  Identities=28%  Similarity=0.363  Sum_probs=204.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++.....  .++.+
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~i   78 (353)
T TIGR03265         3 PYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDY   78 (353)
T ss_pred             cEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            47999999999997  889999999999999999999999999999999999999999999999998764332  35789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+||++.+|+.+||+||+.|....++.+..+..++++++++.++|.. +++++.+|||||||||+|||||+.+|++|||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL  158 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL  158 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999999999877777777778888999999999965 7999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||||++||+..++.+++.++.+.+ .|.|+|++|||++++.. ||||++|++|++++.|+++++.+...
T Consensus       159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~  227 (353)
T TIGR03265       159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA  227 (353)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            999999999999999999777655 49999999999999965 99999999999999999999987643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=8.3e-53  Score=422.34  Aligned_cols=219  Identities=24%  Similarity=0.429  Sum_probs=201.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .++++|++++|++  +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|.++|.++... ....++++|
T Consensus         2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-~~~~~~~ig   78 (301)
T TIGR03522         2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-PKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-hHHHHhceE
Confidence            5899999999987  8899999999999999999999999999999999999999999999999887542 234567899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+++.+||.||+.+++.+++.+.++..++++++++.+++.. .++++++|||||||||+||+||+++|++||||
T Consensus        79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD  158 (301)
T TIGR03522        79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD  158 (301)
T ss_pred             EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999999888888776666777889999999965 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+||||.+++.+|++++.+++ ++|||++||++++++. |||+++|++|++++.|+++++...
T Consensus       159 EPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       159 EPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            99999999999999999888754 7999999999999975 999999999999999999998654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=8.8e-53  Score=422.31  Aligned_cols=221  Identities=33%  Similarity=0.535  Sum_probs=200.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.... ...++++
T Consensus         3 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i   79 (303)
T TIGR01288         3 VAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI   79 (303)
T ss_pred             cEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence            57999999999987  78999999999999999999999999999999999999999999999998775322 3346789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+||++.+++.+||+||+.+++..++.+.....+++.++++.+++.. .++++++|||||||||+||+||+++|++|||
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  159 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL  159 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999999999999999988776666665555667778899999965 7899999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       160 DEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       160 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            99999999999999999988877779999999999999965 999999999999999999988654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-52  Score=430.38  Aligned_cols=222  Identities=24%  Similarity=0.374  Sum_probs=204.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|++  +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.....  .+++|
T Consensus         5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i   80 (351)
T PRK11432          5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI   80 (351)
T ss_pred             cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            47999999999987  889999999999999999999999999999999999999999999999998764332  34789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+||++.+|+.+||+||+.|....++.++.+..+++.++++.+++.. +++++.+|||||||||+|||||+.+|++|||
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL  160 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF  160 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999999887777777778888999999999965 7899999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||||+|||+..+..+++.++.+.+ .|+|+|++|||++++.. ||||++|++|+++..|+++++..+..
T Consensus       161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~  229 (351)
T PRK11432        161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA  229 (351)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            999999999999999999777654 49999999999999965 99999999999999999999987654

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2e-54  Score=405.32  Aligned_cols=231  Identities=26%  Similarity=0.401  Sum_probs=209.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~  166 (457)
                      ..+.++|+.|+|++  +.|+++|||+|++||++||+|||||||||.+.|++|+.+|++|+|+++|.+++..+. ...|..
T Consensus         3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG   80 (243)
T COG1137           3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG   80 (243)
T ss_pred             cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence            46899999999999  999999999999999999999999999999999999999999999999999987543 345678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH--HHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDES--IWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~--~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |||+||+++.|..|||+||+.....++..+.+  +.+.+++.+++.|.+.+ .+++..+||||||||+.|||||+.+|++
T Consensus        81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f  160 (243)
T COG1137          81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF  160 (243)
T ss_pred             cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence            99999999999999999999988877764444  44455779999999976 6899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      ++|||||+|+||.+...|.++++.+++.|..|+||-|+..|.. .|||.++|++|+|+++|+|+++.+.   +.+.+.|+
T Consensus       161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n---~~Vr~~YL  237 (243)
T COG1137         161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN---EDVRRVYL  237 (243)
T ss_pred             EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC---hhhhhhcc
Confidence            9999999999999999999999999999999999999999975 5999999999999999999999875   55666665


Q ss_pred             h
Q psy10858        323 K  323 (457)
Q Consensus       323 ~  323 (457)
                      .
T Consensus       238 G  238 (243)
T COG1137         238 G  238 (243)
T ss_pred             c
Confidence            3

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.8e-52  Score=403.75  Aligned_cols=219  Identities=29%  Similarity=0.410  Sum_probs=194.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcCc
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGSK  166 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~~  166 (457)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....   ...++.
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   78 (235)
T cd03261           1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR   78 (235)
T ss_pred             CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence            578999999987  789999999999999999999999999999999999999999999999987754322   234678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++.+++.+||.||+.+....+ +.+.++..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|
T Consensus        79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll  158 (235)
T cd03261          79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL  158 (235)
T ss_pred             eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999998865433 3455555667888999999964 68999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            99999999999999999999887765 48999999999999865 99999999999999999988764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2e-52  Score=430.11  Aligned_cols=220  Identities=23%  Similarity=0.313  Sum_probs=202.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--eEEEEcCccCCCCchhhhcCc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ--GEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s--G~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .|+++|++++|++  +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++  |+|+++|+++.....  .++.
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~   80 (362)
T TIGR03258         5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG   80 (362)
T ss_pred             EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence            4889999999997  789999999999999999999999999999999999999999  999999988754332  3468


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |||+||++.+|+.+||+||+.|....++.++.+..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||
T Consensus        81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL  160 (362)
T TIGR03258        81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL  160 (362)
T ss_pred             EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999999887777777777888999999999965 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~--g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||||+|||+..+..+++.++.+.++  |+|+|++|||++++.. ||||++|++|+++..|+++++.+..
T Consensus       161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP  230 (362)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            99999999999999999998777665  8999999999999965 9999999999999999999998764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.4e-52  Score=420.61  Aligned_cols=213  Identities=30%  Similarity=0.546  Sum_probs=193.9

Q ss_pred             EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCC
Q psy10858         97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM  176 (457)
Q Consensus        97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L  176 (457)
                      |+|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ....++++||+||++.+
T Consensus         1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~   77 (302)
T TIGR01188         1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGIVPQYASV   77 (302)
T ss_pred             CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-HHHHHhhcEEecCCCCC
Confidence            46776  7899999999999999999999999999999999999999999999999887542 23346789999999999


Q ss_pred             CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858        177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP  255 (457)
Q Consensus       177 ~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp  255 (457)
                      ++.+||+||+.+++..++.+.....+++.++++.+++.. .++++++|||||||||+||+||+++|++|||||||+||||
T Consensus        78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~  157 (302)
T TIGR01188        78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP  157 (302)
T ss_pred             CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence            999999999999888888776666777889999999964 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        256 LVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       256 ~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      .+++.+|++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.++.
T Consensus       158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~  215 (302)
T TIGR01188       158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRL  215 (302)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence            99999999988877779999999999999975 9999999999999999999887653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=5.6e-52  Score=428.61  Aligned_cols=223  Identities=26%  Similarity=0.352  Sum_probs=204.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.....  .++.
T Consensus        12 ~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~   87 (375)
T PRK09452         12 SPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRH   87 (375)
T ss_pred             CceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence            467999999999997  889999999999999999999999999999999999999999999999998764332  3478


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+||++.+|+.+||+||+.|.....+.+..+..+++.++++.+++.. +++++.+|||||||||+|||||+.+|++||
T Consensus        88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL  167 (375)
T PRK09452         88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL  167 (375)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999999877667777777778899999999965 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||+|||+..+..+++.++.+.+ .|+|+|++|||++++.. ||||++|++|+++..|+++++.++..
T Consensus       168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~  237 (375)
T PRK09452        168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK  237 (375)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            9999999999999999999877655 49999999999999865 99999999999999999999987654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.3e-53  Score=416.94  Aligned_cols=229  Identities=28%  Similarity=0.391  Sum_probs=206.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc---cCCCCchhhhc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKTAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~---~~~~~~~~~~r  164 (457)
                      ++|.++++++.|+.  ..+++|||++|+.||.++|+|||||||||||++|+|++.|++|.|.++|+   +....  ....
T Consensus         1 m~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~   76 (345)
T COG1118           1 MSIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD   76 (345)
T ss_pred             Cceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence            47899999999999  99999999999999999999999999999999999999999999999998   54432  2335


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcC--CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g--~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      ++|||+||+.+||+.|||.+|+.|+.+...  -++..++.++.++++.+.|.. .+++|.+|||||||||+|||||+.+|
T Consensus        77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP  156 (345)
T COG1118          77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP  156 (345)
T ss_pred             cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCC
Confidence            789999999999999999999999987653  245678889999999999976 79999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      ++|+||||+++||...|..+...++.+.++ |.|.++||||.+|+.. ||||++|++|+|...|+|+++....+......
T Consensus       157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~  236 (345)
T COG1118         157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVAR  236 (345)
T ss_pred             CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceec
Confidence            999999999999999999999997777665 9999999999999965 99999999999999999999988776554444


Q ss_pred             H
Q psy10858        320 V  320 (457)
Q Consensus       320 ~  320 (457)
                      .
T Consensus       237 f  237 (345)
T COG1118         237 F  237 (345)
T ss_pred             c
Confidence            3

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=5.4e-52  Score=396.71  Aligned_cols=216  Identities=31%  Similarity=0.506  Sum_probs=194.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... ....++++||
T Consensus         1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   77 (220)
T cd03265           1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI   77 (220)
T ss_pred             CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence            578999999987  7899999999999999999999999999999999999999999999999876432 2334568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+||+||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus        78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE  157 (220)
T cd03265          78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE  157 (220)
T ss_pred             ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999998766666665556677888999999964 689999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||+|||+.+++.++++++.+.++ |+|||++||+++++.. |||+++|++|+++..|+++++
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999998777665 8999999999999865 999999999999999887764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-52  Score=422.75  Aligned_cols=224  Identities=25%  Similarity=0.352  Sum_probs=201.0

Q ss_pred             ceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh
Q psy10858         89 ADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~  163 (457)
                      ||+++|++++|+.  .++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...+..   ..
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            5899999999972  126799999999999999999999999999999999999999999999999987643322   23


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +++|||+||++.+++.+||.||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  160 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            6789999999999999999999998877777776666778889999999965 689999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      +|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++....
T Consensus       161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~  232 (343)
T PRK11153        161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP  232 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999877755 49999999999999875 9999999999999999999987653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-52  Score=405.65  Aligned_cols=223  Identities=28%  Similarity=0.392  Sum_probs=205.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC-CchhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-IYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~-~~~~~~r~~  166 (457)
                      +++++++++++|+++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+... ......+++
T Consensus         2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            579999999999874 599999999999999999999999999999999999999999999999988752 344567899


Q ss_pred             EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      ||||+|+|. .+..-||.+.+.|.....|++.+++.+++.++++.+++.+ +++.+.+|||||||||+||.+|+.+|++|
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il  160 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL  160 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence            999999993 3445699999999999999999999999999999999965 79999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||||||||.+++.++++++.+.++ |+|||++|||++++.. |||+++|++|+++.+|+|+++++.
T Consensus       161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            999999999999999999998887766 7999999999999965 999999999999999999988764

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=7.6e-52  Score=424.60  Aligned_cols=221  Identities=29%  Similarity=0.406  Sum_probs=200.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....  ..++++|
T Consensus         2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~i~   77 (353)
T PRK10851          2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH--ARDRKVG   77 (353)
T ss_pred             EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC--HHHCCEE
Confidence            5899999999987  78999999999999999999999999999999999999999999999999875432  2346899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |+||++.+|+.+||+||+.|....+    +.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l  157 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI  157 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999999876542    3455666778899999999965 7999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||+|||+..++.+++.++.+.++ |+|+|++|||++++.. ||||++|++|++++.|+++++.++..
T Consensus       158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~  229 (353)
T PRK10851        158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA  229 (353)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            9999999999999999999998776655 8999999999999975 99999999999999999999987643

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=4.8e-52  Score=395.63  Aligned_cols=211  Identities=24%  Similarity=0.350  Sum_probs=186.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~  165 (457)
                      |++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.....   ...++
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            588999999996422469999999999999999999999999999999999999999999999987653221   12456


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      .+||+||++.+++.+||.||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL  160 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            89999999999999999999998766556555555667888999999964 78999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      ||||||+|||+.+++.++++++.++++|.|||++||+++++.. ||++++|++|++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999999988776679999999999999975 999999999975

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-52  Score=400.83  Aligned_cols=230  Identities=25%  Similarity=0.315  Sum_probs=202.6

Q ss_pred             CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhc
Q psy10858         88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r  164 (457)
                      ++++++|+++.|+.++  +.+|++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|++..... ....+
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence            5899999999999821  23999999999999999999999999999999999999999999999997765432 22456


Q ss_pred             CcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        165 SKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       165 ~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      +.|.+|||+|  +|.|..||++.|.-.....|+++.+  +++.++++.++|+.  ++++|.+|||||+||++|||||+.+
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~  159 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE  159 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence            8899999998  6899999999998888877776543  44889999999964  7999999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS  318 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~  318 (457)
                      |++||||||||+||+..+.++|+++..++ +.|.|+|++|||+..++. ||||++|++|++++.++.+++.+....+.-.
T Consensus       160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr  239 (252)
T COG1124         160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTR  239 (252)
T ss_pred             CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHH
Confidence            99999999999999999999999966655 458999999999999986 9999999999999999999998764444433


Q ss_pred             H
Q psy10858        319 D  319 (457)
Q Consensus       319 ~  319 (457)
                      +
T Consensus       240 ~  240 (252)
T COG1124         240 E  240 (252)
T ss_pred             H
Confidence            3

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=2e-51  Score=397.05  Aligned_cols=231  Identities=25%  Similarity=0.412  Sum_probs=203.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +++++|++++|++  +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..... ..++.++
T Consensus         1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~   77 (236)
T TIGR03864         1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLG   77 (236)
T ss_pred             CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEE
Confidence            5789999999987  789999999999999999999999999999999999999999999999987754332 2235799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+++.+|++||+.+....++.......+.+.++++.+++.. .++.+.+||||||||++|||||+.+|++||||
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  157 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD  157 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999889999999988766655555555667788899999964 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      |||+|||+.+++.++++++.+.+ +|.|||++||+++++..||++++|++|++++.|+++++...+....+.+.|.
T Consensus       158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~  233 (236)
T TIGR03864       158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEAAFL  233 (236)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence            99999999999999999877654 5899999999999997799999999999999999999877644445666665

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.4e-51  Score=398.81  Aligned_cols=219  Identities=29%  Similarity=0.395  Sum_probs=193.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.....  .++.++
T Consensus         2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   77 (239)
T cd03296           2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG   77 (239)
T ss_pred             EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence            5899999999987  789999999999999999999999999999999999999999999999987653321  246799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCC----CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGM----DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~----~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |+||++.+++.+||.||+.+.....+.    ...+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l  157 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV  157 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            999999999999999999876544332    33344566778899999964 6889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||||+|||+.+++.+++++..++++ |+|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus       158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  227 (239)
T cd03296         158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH  227 (239)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence            9999999999999999999998877654 8999999999999865 999999999999999999988654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.2e-51  Score=396.54  Aligned_cols=227  Identities=27%  Similarity=0.474  Sum_probs=198.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~IG  168 (457)
                      ++++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++....... .++.+|
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (232)
T cd03218           1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG   78 (232)
T ss_pred             CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence            578999999987  78999999999999999999999999999999999999999999999998765433222 345799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+++.+||+||+.+....++........++.++++.+++.. .++.+.+|||||||||+||+||+++|++||||
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  158 (232)
T cd03218          79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD  158 (232)
T ss_pred             EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999999988655555555555667788899999964 68999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      |||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++...   ..+++.|
T Consensus       159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---~~~~~~~  230 (232)
T cd03218         159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN---ELVRKVY  230 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC---HHHHHHh
Confidence            9999999999999999988776679999999999999865 999999999999999999887542   3455544

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-52  Score=399.58  Aligned_cols=230  Identities=24%  Similarity=0.362  Sum_probs=204.2

Q ss_pred             CceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858         88 EADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA  163 (457)
Q Consensus        88 ~~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~  163 (457)
                      ++|+++||++.| ++  +.+|+||||+|++||+++|+|+||||||||||+|+|+.+|++|+|.++|.++.....   ...
T Consensus         2 ~~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~   79 (258)
T COG3638           2 MMIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL   79 (258)
T ss_pred             ceEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence            689999999999 66  899999999999999999999999999999999999999999999999988765442   345


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHh--------hhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHH
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFF--------GMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~--------~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA  234 (457)
                      |++|||+||.++|.+.+||.+|+..+        ..++|+..++.+.++-++++.+|+. .+-++.++|||||||||+||
T Consensus        80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA  159 (258)
T COG3638          80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA  159 (258)
T ss_pred             HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence            78999999999999999999999753        2346776666677788899999994 47889999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||+++|+|||.|||+++|||.+.+++++.++.. .++|.|||++.|+++.|.. ||||+-|++|+|+++|+++++..  
T Consensus       160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~--  237 (258)
T COG3638         160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD--  237 (258)
T ss_pred             HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH--
Confidence            9999999999999999999999999999996554 5679999999999999964 99999999999999999998643  


Q ss_pred             CcccHHHHHHh
Q psy10858        313 SMPKLSDVFYK  323 (457)
Q Consensus       313 ~~~~l~~~f~~  323 (457)
                        ..+.++|..
T Consensus       238 --~~~~~iYg~  246 (258)
T COG3638         238 --EALDEIYGN  246 (258)
T ss_pred             --HHHHHHhcc
Confidence              456666654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-51  Score=424.15  Aligned_cols=221  Identities=27%  Similarity=0.399  Sum_probs=200.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .++.||
T Consensus         3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~   78 (369)
T PRK11000          3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG   78 (369)
T ss_pred             EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence            5899999999987  789999999999999999999999999999999999999999999999988754322  246799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+|+.+||+||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus        79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD  158 (369)
T PRK11000         79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (369)
T ss_pred             EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999999998876666666666778899999999965 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+|||+.+++.+++.++.+.+ .|+|||++|||++++.. |||+++|++|+++..|+++++.....
T Consensus       159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~  226 (369)
T PRK11000        159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  226 (369)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99999999999999999877655 49999999999999965 99999999999999999999976543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-51  Score=423.99  Aligned_cols=223  Identities=25%  Similarity=0.364  Sum_probs=203.2

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|+++|+++....  ..++.
T Consensus        17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~   92 (377)
T PRK11607         17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRP   92 (377)
T ss_pred             CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--HHHCC
Confidence            457999999999987  78999999999999999999999999999999999999999999999998875432  23578


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |||+||++.+|+.+||.||+.|..+..+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999999877667777777888999999999965 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||++||+..+..+++.+..+ ++.|.|+|++|||++++.. |||+++|++|+++..|+++++..+..
T Consensus       173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~  242 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT  242 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence            99999999999999999986655 4459999999999999865 99999999999999999999987654

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=1.8e-51  Score=396.01  Aligned_cols=220  Identities=25%  Similarity=0.362  Sum_probs=195.4

Q ss_pred             ceEEEeeEEEeCCCCc----eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---
Q psy10858         89 ADEGKNTEKEELKPSN----VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~----~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---  161 (457)
                      ||+++|++++|++  +    .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......   
T Consensus         1 ~i~~~~l~~~~~~--~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~   78 (233)
T cd03258           1 MIELKNVSKVFGD--TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR   78 (233)
T ss_pred             CeEEecceEEccC--CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence            5889999999986  5    899999999999999999999999999999999999999999999999887543221   


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ..++.+||+||++.+++.+|+.||+.+....++.......+.+.++++.+++.. .++++.+|||||||||+||+||+.+
T Consensus        79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  158 (233)
T cd03258          79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN  158 (233)
T ss_pred             HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            235789999999999999999999988665555555555667888999999964 6889999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |++|||||||+|||+.+++.+++++..++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus       159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         159 PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999998777654 8999999999999865 99999999999999999887653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1e-51  Score=489.29  Aligned_cols=227  Identities=28%  Similarity=0.397  Sum_probs=208.5

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+|+++||+|+|+++++.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....++.
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence            46899999999998533689999999999999999999999999999999999999999999999988753 22345678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ||||||++.+++.+||+||+.++++++|.+.++.+++++++++.++|.. .++++++|||||||||+||+||+++|+|||
T Consensus      2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257      2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred             EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999999998888887777778888999999954 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM  314 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~  314 (457)
                      |||||+||||.+++.+|++++.++++|+|||+|||+|++++. |||+++|++|++++.|++++++++++.
T Consensus      2094 LDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257      2094 LDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCC
Confidence            999999999999999999988877779999999999999976 999999999999999999999988763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.9e-51  Score=396.17  Aligned_cols=219  Identities=27%  Similarity=0.376  Sum_probs=193.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~IG  168 (457)
                      ++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....... .++.+|
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (236)
T cd03219           1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG   78 (236)
T ss_pred             CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence            468999999987  78999999999999999999999999999999999999999999999998875433222 246799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCC----------CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGM----------DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~----------~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      |+||++.+++.+||+||+.+.....+.          ......+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus        79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  158 (236)
T cd03219          79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL  158 (236)
T ss_pred             EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence            999999999999999999886544322          13344566788899999964 6899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+|++|||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus       159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            99999999999999999999999999988776679999999999999965 99999999999999999888754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.6e-51  Score=391.33  Aligned_cols=210  Identities=32%  Similarity=0.444  Sum_probs=187.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....  ..++.+||
T Consensus         1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~   76 (213)
T cd03259           1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM   76 (213)
T ss_pred             CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence            578999999987  78999999999999999999999999999999999999999999999998775422  23467999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+|++||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus        77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE  156 (213)
T cd03259          77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE  156 (213)
T ss_pred             EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999987655555555555667888999999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.++++++.+++ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999877655 59999999999999865 9999999999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2e-51  Score=427.58  Aligned_cols=230  Identities=23%  Similarity=0.340  Sum_probs=204.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|+++|+++........++++
T Consensus         2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            47999999999998  8999999999999999999999999999999999999999999999999988765545567889


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ||++|++.+++.+||+||+.+....+    +.......+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~  159 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP  159 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999998754321    1112344567888999999965 789999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      +|||||||+|||+.++..++++++.+.++|+|||++||+++++.. |||+++|++|++++.|+++++++.   +.+.+.|
T Consensus       160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~---~~l~~~~  236 (402)
T PRK09536        160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA---DTLRAAF  236 (402)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc---HHHHHHh
Confidence            999999999999999999999988877679999999999999965 999999999999999999998754   4566666


Q ss_pred             H
Q psy10858        322 Y  322 (457)
Q Consensus       322 ~  322 (457)
                      .
T Consensus       237 ~  237 (402)
T PRK09536        237 D  237 (402)
T ss_pred             C
Confidence            4

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=1.6e-51  Score=423.30  Aligned_cols=221  Identities=23%  Similarity=0.367  Sum_probs=198.5

Q ss_pred             EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhh----cCcEEEEcC
Q psy10858         97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA----GSKVGYMPQ  172 (457)
Q Consensus        97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~----r~~IGyvpQ  172 (457)
                      |+|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+....    ++.+||+||
T Consensus         1 ~~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q   78 (363)
T TIGR01186         1 KKTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ   78 (363)
T ss_pred             CccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence            46777  889999999999999999999999999999999999999999999999998875544333    678999999


Q ss_pred             CCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858        173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV  251 (457)
Q Consensus       173 ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs  251 (457)
                      ++.+|+.+||+||+.+.....+.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s  158 (363)
T TIGR01186        79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS  158 (363)
T ss_pred             CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            9999999999999999877778877777888999999999965 799999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        252 GVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       252 GLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      ||||.+++.+.+.+..+.+ .|+|||++|||++++.. ||||++|++|+++..|+++++......+.+..
T Consensus       159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~  228 (363)
T TIGR01186       159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEE  228 (363)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHH
Confidence            9999999999999776654 49999999999999865 99999999999999999999987654443433

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2e-51  Score=391.51  Aligned_cols=212  Identities=24%  Similarity=0.433  Sum_probs=191.3

Q ss_pred             ceEEEeeEEEeCCCCc----eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         89 ADEGKNTEKEELKPSN----VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~----~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      +++++|++++|++  .    .+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... ....+
T Consensus         1 ~l~~~~v~~~~~~--~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~   77 (218)
T cd03266           1 MITADALTKRFRD--VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-PAEAR   77 (218)
T ss_pred             CeEEEEEEEecCC--CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-HHHHH
Confidence            5789999999987  4    799999999999999999999999999999999999999999999999887532 23446


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +.+||+||++.+++.+||+||+.+....++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus        78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i  157 (218)
T cd03266          78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV  157 (218)
T ss_pred             hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence            789999999999999999999988766666666666777888999999964 7899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      |||||||+|||+.+++.+++++..+.++|+|||++||+++++.. |||+++|++|++++.|
T Consensus       158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            99999999999999999999988776679999999999999865 9999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-51  Score=392.66  Aligned_cols=217  Identities=22%  Similarity=0.302  Sum_probs=191.4

Q ss_pred             CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---
Q psy10858         88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---  162 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~---  162 (457)
                      ++++++|++++|+++.  ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......   
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence            5799999999997422  46999999999999999999999999999999999999999999999998876433221   


Q ss_pred             h-cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 A-GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 ~-r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      . ++.+||+||++.+++.+|++||+.+.....+...++..+++.++++.+++.. .++.+.+|||||||||+||+||+.+
T Consensus        84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            2 3679999999999999999999988655555555556677888999999965 6889999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs  304 (457)
                      |++|||||||+|||+.+++.++++++.+++ +|+|||++||+++++..+|++++|++|++++.++
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            999999999999999999999999887754 5899999999999998778999999999998775

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=6.6e-52  Score=385.72  Aligned_cols=215  Identities=25%  Similarity=0.340  Sum_probs=201.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~  165 (457)
                      ||+++||+|.|+++ ..||+||||+|++||++-|+||||||||||||+|.+..+|++|+|+++|.++.....   ...|+
T Consensus         1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            68999999999986 779999999999999999999999999999999999999999999999999875432   34689


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+|||++.|.+++||+||++|..+..|.+++++++++.++++.+||.+ ++..|.+|||||||||+||||++++|++|
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL  159 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL  159 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence            99999999999999999999999999999999999999999999999965 78899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs  304 (457)
                      |.||||.+|||....+++++++.+...|+||+|+|||.+.+.. -.|++.+.+|+++....
T Consensus       160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            9999999999999999999998888889999999999999987 57899999999987654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=8.5e-51  Score=393.32  Aligned_cols=222  Identities=29%  Similarity=0.390  Sum_probs=196.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcCc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~~  166 (457)
                      +++++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...  .....++.
T Consensus         1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            5789999999987  7899999999999999999999999999999999999999999999999877532  11234568


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++.+++.+||.||+.+... ..+....+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  158 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM  158 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999999999987542 234555556667888999999954 68999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|+++..|+++++.+..
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  227 (240)
T PRK09493        159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP  227 (240)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence            9999999999999999999988777679999999999999965 9999999999999999998886543

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=9.9e-51  Score=413.07  Aligned_cols=233  Identities=21%  Similarity=0.271  Sum_probs=203.5

Q ss_pred             ccCceEEEeeEEEeCCC-----------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858         86 EEEADEGKNTEKEELKP-----------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~-----------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      .+++|+++||+++|+..           ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~   84 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD   84 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence            34789999999999631           2579999999999999999999999999999999999999999999999998


Q ss_pred             CCCCch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc--CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCCh
Q psy10858        155 PASIYH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIY--GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSG  225 (457)
Q Consensus       155 ~~~~~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~--g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSG  225 (457)
                      +.....   ...+++|+|+||++  .+++.+||.+|+.+....+  ++++++..+++.++++.+++. . +++++.+|||
T Consensus        85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence            765432   22457899999998  6888999999998865544  366667777888999999994 3 6899999999


Q ss_pred             hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||||||+|||||+.+|++|||||||+|||+.++.+++++++.+++ .|.|||++|||++++.. ||||++|.+|+|++.|
T Consensus       165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g  244 (331)
T PRK15079        165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG  244 (331)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            999999999999999999999999999999999999999877765 49999999999999975 9999999999999999


Q ss_pred             ChhhhhhcCCcccHH
Q psy10858        304 SPDGFKSKYSMPKLS  318 (457)
Q Consensus       304 s~~~l~~~~~~~~l~  318 (457)
                      +++++.+....+...
T Consensus       245 ~~~~i~~~~~~py~~  259 (331)
T PRK15079        245 TYDEVYHNPLHPYTK  259 (331)
T ss_pred             CHHHHHcCCCCHHHH
Confidence            999998765444333

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-51  Score=404.67  Aligned_cols=224  Identities=24%  Similarity=0.302  Sum_probs=199.9

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ++++++|++++|++. .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........+++
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence            479999999999742 2469999999999999999999999999999999999999999999999998764433445678


Q ss_pred             EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++ .+++.+||.||+.+.....+.+.++..+++.++++.++|.. .++.+.+||||||||++|||||+.+|++|
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL  162 (279)
T PRK13650         83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII  162 (279)
T ss_pred             ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            99999998 46777899999998766667777777778889999999965 78999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||||+|||+.+++.++++++.+.++ |+|||++||+++++..|||+++|++|+++..|+++++...
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            999999999999999999998777654 9999999999999977999999999999999999887653

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.9e-51  Score=389.50  Aligned_cols=210  Identities=27%  Similarity=0.368  Sum_probs=184.9

Q ss_pred             eEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh----hh
Q psy10858         90 DEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK----TA  163 (457)
Q Consensus        90 Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~----~~  163 (457)
                      |+++|++++|++.+  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++......    ..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            57899999997522  4799999999999999999999999999999999999999999999999877543211    13


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ++.+||+||++.+++.+||+||+.+.....+.......+++.++++.+++.. .++.+.+|||||||||+|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence            4679999999999999999999998766666554455567888999999964 688999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRI  299 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI  299 (457)
                      +|||||||+|||+.+++.++++++.+++ .|+|||++||+++++..||++++|++|++
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            9999999999999999999999887766 59999999999999888999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-50  Score=404.49  Aligned_cols=222  Identities=24%  Similarity=0.358  Sum_probs=196.1

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc--hhhh
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~--~~~~  163 (457)
                      +|+++||+++|++..   +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....  ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            489999999997421   36999999999999999999999999999999999999999999999998875422  1245


Q ss_pred             cCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--C-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        164 GSKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--N-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       164 r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      ++++||+||++. .+..+||+||+.+.....+.+.++..+++.++++.++|.  . .++++.+||||||||++||+||+.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            678999999973 233579999999876666777777778889999999995  3 689999999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++. .||||++|++|++++.|+++++.+
T Consensus       162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999998877654 999999999999986 599999999999999999998765

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=5.9e-51  Score=388.89  Aligned_cols=216  Identities=27%  Similarity=0.415  Sum_probs=188.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~IG  168 (457)
                      |+++|++++|++  +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....... .++.+|
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (222)
T cd03224           1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG   78 (222)
T ss_pred             CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence            578999999987  78999999999999999999999999999999999999999999999998775433222 356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHc-CCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l-~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |+||++.+++.+|++||+.+....++  .....+++.++++.+ ++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus        79 ~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  156 (222)
T cd03224          79 YVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL  156 (222)
T ss_pred             EeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999988755443  223344566677777 4643 6889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus       157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            99999999999999999988776678999999999999865 9999999999999999887764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-51  Score=390.49  Aligned_cols=227  Identities=21%  Similarity=0.308  Sum_probs=206.4

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----eEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-----GEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-----G~I~i~G~~~~~~--~  159 (457)
                      .++++++||++.||+  +.||+|||++|+++++++|+||||||||||||++..+.....     |+|.++|+++...  +
T Consensus         5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d   82 (253)
T COG1117           5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD   82 (253)
T ss_pred             cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence            468999999999998  999999999999999999999999999999999999987654     9999999998654  4


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...+|++||+|||.|+.|| +|++||+.|+.+++|+..++..+.+++.++...|-     .+++.+..|||||||||+||
T Consensus        83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA  161 (253)
T COG1117          83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA  161 (253)
T ss_pred             HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence            5568999999999999998 89999999999999987788888888888887772     25788899999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|+|||||||||+|||.+..+|-+++..++ +.-|||||||+|..|.+ +|+.++|..|++++.|+.+++++++.
T Consensus       162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~  240 (253)
T COG1117         162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK  240 (253)
T ss_pred             HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence            99999999999999999999999999999998876 57999999999999976 89999999999999999999998765


Q ss_pred             cccH
Q psy10858        314 MPKL  317 (457)
Q Consensus       314 ~~~l  317 (457)
                      ....
T Consensus       241 ~~~T  244 (253)
T COG1117         241 HKRT  244 (253)
T ss_pred             HHHH
Confidence            4333

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=7.6e-51  Score=386.25  Aligned_cols=210  Identities=28%  Similarity=0.400  Sum_probs=188.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....  .++.++|
T Consensus         1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~   76 (213)
T cd03301           1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM   76 (213)
T ss_pred             CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence            478999999987  789999999999999999999999999999999999999999999999988754322  2367999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+|++||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE  156 (213)
T cd03301          77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE  156 (213)
T ss_pred             EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999988766556555666677888899999964 789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.++++++.+.+ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            9999999999999999877765 48999999999999875 9999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=7.8e-51  Score=387.96  Aligned_cols=217  Identities=34%  Similarity=0.536  Sum_probs=193.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++++||
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence            5789999999753257999999999999999999999999999999999999999999999998775422 344678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ++|++.+++.+|++||+.+....++.+.....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  159 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE  159 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            9999999999999999998776666665555667888999999954 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|++++.|+++++
T Consensus       160 P~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         160 PTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999999887755 5999999999999965 999999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.8e-51  Score=403.29  Aligned_cols=224  Identities=25%  Similarity=0.314  Sum_probs=199.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++++++||+++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........++.
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13635          3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ   82 (279)
T ss_pred             CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence            35899999999997533569999999999999999999999999999999999999999999999998765443345678


Q ss_pred             EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++. ++..+||.||+.+.....+.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++|
T Consensus        83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  162 (279)
T PRK13635         83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII  162 (279)
T ss_pred             eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999984 6777899999988766666666666777889999999964 78999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.+++.++++++.+.++ |+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus       163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999999999998777655 899999999999997799999999999999999988764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-50  Score=402.01  Aligned_cols=220  Identities=25%  Similarity=0.316  Sum_probs=194.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++|+++|++++|+.. ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........++++
T Consensus         3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            479999999999631 6799999999999999999999999999999999999999999999999887644434456789


Q ss_pred             EEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ||+||++. .+..+||.||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll  161 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV  161 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999973 4456899999987655556666666677888999999954 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l  308 (457)
                      |||||+|||+.++..++++++.++++|+|||++||+++++. .|||+++|++|++++.|+++++
T Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            99999999999999999998877667999999999999985 5999999999999999998754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.8e-50  Score=392.91  Aligned_cols=221  Identities=26%  Similarity=0.341  Sum_probs=195.7

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc--------h
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--------H  160 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~--------~  160 (457)
                      +++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        .
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (250)
T PRK11264          3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI   80 (250)
T ss_pred             cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence            7999999999987  78999999999999999999999999999999999999999999999998764321        1


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ...++.+||+||++.+++.+|+.||+.+... ..+.......+++.++++.+++.. .++++.+|||||||||+||+||+
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~  160 (250)
T PRK11264         81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA  160 (250)
T ss_pred             HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence            2345689999999999999999999987533 234444555667788899999965 68899999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      .+|++|||||||+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus       161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  234 (250)
T PRK11264        161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD  234 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999988777779999999999999965 999999999999999999988654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=6.2e-51  Score=390.78  Aligned_cols=215  Identities=23%  Similarity=0.330  Sum_probs=188.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCccCCCCc--hhh
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-----NISQGEIWVLGGHPASIY--HKT  162 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-----~p~sG~I~i~G~~~~~~~--~~~  162 (457)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|.++....  ...
T Consensus         1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   78 (227)
T cd03260           1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE   78 (227)
T ss_pred             CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence            578999999987  78999999999999999999999999999999999999     999999999998765432  233


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH-HHHHHHHHHHHhHcCCCC-CCCC--CCCCChhHHHHHHHHHHhh
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLPN-LERP--VKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~-~~~~~~~~~ll~~l~L~~-~~~~--~~~LSGGqkQRlsLA~ALl  238 (457)
                      .++.+||+||++.++ .+||+||+.+....++... ....+++.++++.+++.. .+++  +.+|||||||||+||+||+
T Consensus        79 ~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~  157 (227)
T cd03260          79 LRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA  157 (227)
T ss_pred             HHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence            467899999999988 7999999988665555433 234567788899999964 4555  5999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      .+|++|||||||+|||+.+++.++++++.++++ +|||++||+++++.. ||++++|++|++++.|+++++
T Consensus       158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            999999999999999999999999998887666 999999999999865 999999999999999987653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-51  Score=396.87  Aligned_cols=230  Identities=26%  Similarity=0.380  Sum_probs=208.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~  166 (457)
                      +++++++++|+||+  ..||+||||+|++||++||+|||||||||++++|+|+++|++|+|.++|++++..+ .+..+..
T Consensus         3 ~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G   80 (250)
T COG0411           3 PLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG   80 (250)
T ss_pred             ceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence            57899999999999  99999999999999999999999999999999999999999999999999997654 3445678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhc-------C-----CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIY-------G-----MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-------g-----~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsL  233 (457)
                      |+--||...+|++|||.||+......+       +     ...++..+++.++++.++|.. +++++++||+||||||.|
T Consensus        81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI  160 (250)
T COG0411          81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEI  160 (250)
T ss_pred             ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence            899999999999999999998754321       1     134667888899999999965 899999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|++|+||||.+||.|....++.++++.+++ .|+||+++.|||+.+.. ||||++|+.|+++++|+|+++.++
T Consensus       161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d  240 (250)
T COG0411         161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN  240 (250)
T ss_pred             HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence            9999999999999999999999999999999888877 47999999999999965 999999999999999999999875


Q ss_pred             CCcccHHHHHH
Q psy10858        312 YSMPKLSDVFY  322 (457)
Q Consensus       312 ~~~~~l~~~f~  322 (457)
                         +.+.++|+
T Consensus       241 ---p~VieAYL  248 (250)
T COG0411         241 ---PRVIEAYL  248 (250)
T ss_pred             ---HHhHHHhc
Confidence               66777776

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.5e-50  Score=392.30  Aligned_cols=221  Identities=27%  Similarity=0.414  Sum_probs=196.0

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.+||
T Consensus         1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence            4789999999752 469999999999999999999999999999999999999999999999987754333344678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC---CCCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP---NLERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~---~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      +||++.+++.+||+||+.++....+.+.....+++.++++.+++.   ..++++.+|||||||||+|||||+.+|++|||
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  159 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM  159 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            999999999999999998876665655555566788899999996   35889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+|||+.+++.++++++.++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus       160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  226 (242)
T cd03295         160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS  226 (242)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence            9999999999999999998877654 8999999999999865 999999999999999999888654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-50  Score=420.87  Aligned_cols=234  Identities=22%  Similarity=0.335  Sum_probs=201.4

Q ss_pred             CceEEEeeEEEeCCCC----------------------ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858         88 EADEGKNTEKEELKPS----------------------NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ  145 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~----------------------~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s  145 (457)
                      .+|+++||+|.||...                      ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s   82 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR   82 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence            3577777777777621                      248999999999999999999999999999999999999999


Q ss_pred             eEEEEcCccCCCCchhh----hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCC
Q psy10858        146 GEIWVLGGHPASIYHKT----AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV  220 (457)
Q Consensus       146 G~I~i~G~~~~~~~~~~----~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~  220 (457)
                      |+|+++|.++...+...    .++++||+||++.+|+.+||+||+.+.....+.+.++..+++.++++.++|.. .++++
T Consensus        83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~  162 (400)
T PRK10070         83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP  162 (400)
T ss_pred             CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence            99999999876433221    24679999999999999999999998877667766666677889999999965 78999


Q ss_pred             CCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      .+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.+..+++ .|+|||++||+++++.. ||++++|++|+
T Consensus       163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~  242 (400)
T PRK10070        163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE  242 (400)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999777654 58999999999999965 99999999999


Q ss_pred             EEEecChhhhhhcCCcccHHHHH
Q psy10858        299 IIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       299 I~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      ++..|+++++........+.+.+
T Consensus       243 i~~~g~~~~l~~~~~~~~v~~~~  265 (400)
T PRK10070        243 VVQVGTPDEILNNPANDYVRTFF  265 (400)
T ss_pred             EEecCCHHHHHhCcccHHHHHHH
Confidence            99999999987754333343333

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.3e-50  Score=391.10  Aligned_cols=219  Identities=26%  Similarity=0.389  Sum_probs=189.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhhhcCc
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKTAGSK  166 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~~r~~  166 (457)
                      ++++|++++|+++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....   ....++.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence            4789999999742 57999999999999999999999999999999999999999999999998875432   2234578


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhh--------hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGM--------IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~--------l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++|+||++.+++.+||+||+.+...        +.+.......+++.++++.+++.. .++++.+|||||||||+||+||
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999976432        112222334456778899999964 6889999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      +++|++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++. .||++++|++|+++..|+++++.
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            999999999999999999999999999877654 4899999999999997 59999999999999999998864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=2.5e-50  Score=397.80  Aligned_cols=223  Identities=22%  Similarity=0.312  Sum_probs=196.2

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~  163 (457)
                      +++|+++|++++|++  +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....   ...
T Consensus         5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (269)
T PRK11831          5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV   82 (269)
T ss_pred             cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence            358999999999987  789999999999999999999999999999999999999999999999987754321   123


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      ++.+||+||++.+++.+||.||+.+..... +.+.....+++.++++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus        83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p  162 (269)
T PRK11831         83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP  162 (269)
T ss_pred             hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            567999999999999999999998754332 2344445566778899999965 78899999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus       163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (269)
T PRK11831        163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN  234 (269)
T ss_pred             CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999998776554 8999999999999865 999999999999999999998764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-50  Score=391.25  Aligned_cols=219  Identities=22%  Similarity=0.339  Sum_probs=194.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCCC--chh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASI--YHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~~--~~~  161 (457)
                      |++++|++++|++  ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|+++|.++...  ...
T Consensus         1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            5889999999987  78999999999999999999999999999999999999998     99999999877531  223


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHHH
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ..++.+||+||++.+++ +|++||+.+.....+ .+..+..+++..+++.+++.    . .++++.+|||||||||+|||
T Consensus        79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar  157 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR  157 (247)
T ss_pred             HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence            34678999999999988 999999988655554 34455566788889999995    3 68899999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+.+|++|||||||+|||+.++..++++++.+++ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  233 (247)
T TIGR00972       158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN  233 (247)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999887765 4899999999999865 999999999999999999988654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-50  Score=391.40  Aligned_cols=228  Identities=25%  Similarity=0.380  Sum_probs=198.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKV  167 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~I  167 (457)
                      +++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++.+
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (241)
T PRK10895          3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI   80 (241)
T ss_pred             eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence            7999999999987  789999999999999999999999999999999999999999999999988754332 2235689


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ||+||++.+++.+||.||+.+..... +.+..+...++.++++.+++.. .++++.+|||||||||+||+||+.+|++||
T Consensus        81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (241)
T PRK10895         81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL  160 (241)
T ss_pred             EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999998765443 2344445567788899999964 688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      |||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|++++.|+++++...   ..+.+.|
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~---~~~~~~~  234 (241)
T PRK10895        161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD---EHVKRVY  234 (241)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC---hhHhHhh
Confidence            999999999999999999988777779999999999998865 999999999999999999987643   3345555

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.3e-50  Score=384.96  Aligned_cols=208  Identities=28%  Similarity=0.391  Sum_probs=185.6

Q ss_pred             ceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhc
Q psy10858         89 ADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r  164 (457)
                      ||+++|++++|+ +  +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.....   ...+
T Consensus         1 ~l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (214)
T TIGR02673         1 MIEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR   78 (214)
T ss_pred             CEEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            588999999994 4  689999999999999999999999999999999999999999999999988754321   1245


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +.+||+||++.+++.+|+.||+.+....++.......+++.++++.+++.. .++.+.+|||||||||+|||||+.+|++
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l  158 (214)
T TIGR02673        79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL  158 (214)
T ss_pred             hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence            689999999999999999999988766556555555677888999999964 6889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      |||||||+|||+.++..++++++.++++|+|||++||+++++.. ||++++|++|+
T Consensus       159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999988876679999999999999975 99999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=3.2e-50  Score=389.40  Aligned_cols=228  Identities=24%  Similarity=0.329  Sum_probs=196.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~  166 (457)
                      ++|+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...... ..++.
T Consensus         1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   78 (242)
T TIGR03411         1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG   78 (242)
T ss_pred             CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence            36899999999987  7899999999999999999999999999999999999999999999999876543322 23457


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh--------cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI--------YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l--------~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      +||+||++.+++.+||+||+.+....        ++...+....++.++++.+++.. .++.+++|||||||||+|||||
T Consensus        79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral  158 (242)
T TIGR03411        79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL  158 (242)
T ss_pred             eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            99999999999999999999875431        11223344567788999999964 6889999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCccc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK  316 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~  316 (457)
                      +++|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|++++.|+++++.+.   +.
T Consensus       159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~---~~  234 (242)
T TIGR03411       159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD---PR  234 (242)
T ss_pred             hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhcC---HH
Confidence            999999999999999999999999999887755 7999999999999975 999999999999999999887642   33


Q ss_pred             HHHHH
Q psy10858        317 LSDVF  321 (457)
Q Consensus       317 l~~~f  321 (457)
                      +.+.|
T Consensus       235 ~~~~~  239 (242)
T TIGR03411       235 VIEVY  239 (242)
T ss_pred             HHHHh
Confidence            45554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.7e-50  Score=383.45  Aligned_cols=208  Identities=28%  Similarity=0.505  Sum_probs=187.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..    ..++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~   74 (210)
T cd03269           1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY   74 (210)
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence            578999999987  789999999999999999999999999999999999999999999999987642    23568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+|++||+.+....++.+.....+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus        75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE  154 (210)
T cd03269          75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE  154 (210)
T ss_pred             eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            9999999999999999988766666655556677888999999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|++++.|
T Consensus       155 P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            999999999999999988776678999999999999865 9999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.1e-50  Score=385.72  Aligned_cols=211  Identities=29%  Similarity=0.394  Sum_probs=187.3

Q ss_pred             eEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         90 DEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        90 Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      |+++|++++|++..  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++..     .++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            57899999997521  469999999999999999999999999999999999999999999999987642     34679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+||++.+++.+|++||+.+....++.+.....+++.++++.+++.. .++++.+||||||||++|||||+++|++|||
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL  155 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL  155 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999988766566655555667888999999964 6889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecCh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSP  305 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~  305 (457)
                      ||||+|||+.+++.++++++.+. +.|+|||++||+++++.. ||++++|+  +|++++.++.
T Consensus       156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            99999999999999999987764 458999999999999864 99999999  7999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2.1e-50  Score=386.29  Aligned_cols=211  Identities=23%  Similarity=0.308  Sum_probs=187.7

Q ss_pred             ceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhc
Q psy10858         89 ADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r  164 (457)
                      ||+++|++++| ++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....   ...+
T Consensus         1 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~   78 (222)
T PRK10908          1 MIRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR   78 (222)
T ss_pred             CEEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence            58899999999 55  789999999999999999999999999999999999999999999999987754221   1245


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +.++|+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.. .++.+.+||||||||++|||||+.+|++
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (222)
T PRK10908         79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV  158 (222)
T ss_pred             hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence            789999999999889999999988766556655555667788899999954 6889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA  301 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~  301 (457)
                      |||||||+|||+.+++.+++++..++++|.|||++||+++++.. |||+++|++|+++.
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999988776678999999999999975 89999999999854

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-50  Score=399.57  Aligned_cols=221  Identities=23%  Similarity=0.301  Sum_probs=196.7

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCcE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKV  167 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~I  167 (457)
                      |++++|++++|++. +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ....++.+
T Consensus         1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            58899999999531 56999999999999999999999999999999999999999999999998875432 23446789


Q ss_pred             EEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ||+||++. .+..+|+.||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++||
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI  159 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999985 3666899999988766666666666777888999999964 689999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||||+|||+.++..+++.++.++++|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus       160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999999999999999998877777999999999999997799999999999999999988765

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-50  Score=401.53  Aligned_cols=221  Identities=26%  Similarity=0.337  Sum_probs=196.3

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----Cchh
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----IYHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----~~~~  161 (457)
                      ||+++|++++|+...   +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..    ....
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence            589999999997421   259999999999999999999999999999999999999999999999988742    1223


Q ss_pred             hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ..++.+||+||++  .++. .||.||+.|....++.+..+..+++.++++.+++. . .++.+.+||||||||++||+||
T Consensus        81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence            4567899999987  5665 69999999877666777777778889999999994 3 6899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++. .||||++|++|++++.|+++++..
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            9999999999999999999999999998887767999999999999985 599999999999999999999864

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-50  Score=392.47  Aligned_cols=229  Identities=21%  Similarity=0.294  Sum_probs=197.7

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~  159 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|+++|.++...  .
T Consensus        10 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   87 (258)
T PRK14268         10 QPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD   87 (258)
T ss_pred             ceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence            468999999999987  7899999999999999999999999999999999999985     899999999876432  1


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA  234 (457)
                      ....++.+||+||++.+++ +|++||+.+....++.+.+...+++.++++.+++.    . .++++.+|||||||||+||
T Consensus        88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  166 (258)
T PRK14268         88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA  166 (258)
T ss_pred             HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence            2234578999999999887 89999998876555655555556678888888872    2 5789999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|++|||||||+|||+.++..++++++.+.+ |+|||++||+++++.. |||+++|++|++++.|+++++.+...
T Consensus       167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~  245 (258)
T PRK14268        167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR  245 (258)
T ss_pred             HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence            999999999999999999999999999999887754 7999999999999865 99999999999999999999876544


Q ss_pred             cccHHH
Q psy10858        314 MPKLSD  319 (457)
Q Consensus       314 ~~~l~~  319 (457)
                      .....+
T Consensus       246 ~~~~~~  251 (258)
T PRK14268        246 EKSTED  251 (258)
T ss_pred             CHHHHH
Confidence            344443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-50  Score=401.87  Aligned_cols=221  Identities=26%  Similarity=0.388  Sum_probs=194.8

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----Cchh
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----IYHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----~~~~  161 (457)
                      .++++|++++|++..   ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..    ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            389999999997421   469999999999999999999999999999999999999999999999998742    1223


Q ss_pred             hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ..++++||+||++  .++ ..||.||+.+.....+.+..+..+++.++++.++|. . .++++.+|||||||||+||+||
T Consensus        82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            3457899999997  455 479999999876666777777777888999999995 4 6899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+|++|||||||+|||+.++..++++++.+.+ .|.|||++||+++++.. ||||++|++|++++.|+++++.+
T Consensus       161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999999999999999999877755 49999999999999864 99999999999999999988764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-50  Score=391.69  Aligned_cols=219  Identities=26%  Similarity=0.346  Sum_probs=190.0

Q ss_pred             ceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhc
Q psy10858         89 ADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r  164 (457)
                      |++++|++++|+ +  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....   ...+
T Consensus         1 ~l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (243)
T TIGR02315         1 MLEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR   78 (243)
T ss_pred             CeEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence            578999999998 5  779999999999999999999999999999999999999999999999987654221   2245


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhh--------hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGM--------IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~--------l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      +.+||+||++.+++.+||+||+.+...        +.+.......+++.++++.+++.. .++++.+|||||||||+|||
T Consensus        79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  158 (243)
T TIGR02315        79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR  158 (243)
T ss_pred             hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence            789999999999999999999976321        112222334566788899999954 68899999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ||+.+|++|||||||+|||+.+++.++++++.+++ .|+|||++||+++++. .||++++|++|+++..|+++++.
T Consensus       159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (243)
T TIGR02315       159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD  234 (243)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence            99999999999999999999999999999877655 4899999999999986 49999999999999999998863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=3.1e-50  Score=384.13  Aligned_cols=212  Identities=22%  Similarity=0.310  Sum_probs=184.7

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---h
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---A  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~---~  163 (457)
                      +|+++|++++|++..  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......   .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            478999999997421  46999999999999999999999999999999999999999999999998875433211   1


Q ss_pred             -cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        164 -GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       164 -r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                       +++++|+||++.+++.+|++||+.+.....+....+..+++.++++.+++.. .++.+.+|||||||||+|||||+.+|
T Consensus        81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence             2579999999999999999999988655444444444566788999999964 78999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEE
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRII  300 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~  300 (457)
                      ++|||||||+|||+.+++.+++++..+++ .|+|||++||+++++..+|++++|++|+++
T Consensus       161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            99999999999999999999999877765 489999999999999779999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-51  Score=403.26  Aligned_cols=236  Identities=25%  Similarity=0.329  Sum_probs=214.5

Q ss_pred             CceEEEeeEEEeCCC----------------------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858         88 EADEGKNTEKEELKP----------------------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ  145 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~----------------------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s  145 (457)
                      ..|+++|++|-||++                      -...++|+||+|++|||+.|+|-||||||||+++|.++++|++
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~   82 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR   82 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence            468899999999863                      1347999999999999999999999999999999999999999


Q ss_pred             eEEEEcCccCCCCchh----hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCC
Q psy10858        146 GEIWVLGGHPASIYHK----TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV  220 (457)
Q Consensus       146 G~I~i~G~~~~~~~~~----~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~  220 (457)
                      |+|+++|+++...+..    ..++++++|||++.|+|+.||.||..|+..+.|+++++.++++.++++.+||.. .+++|
T Consensus        83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp  162 (386)
T COG4175          83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP  162 (386)
T ss_pred             ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence            9999999998766543    346789999999999999999999999999999999999999999999999965 79999


Q ss_pred             CCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      ++|||||||||.|||||+.+|+|||+|||+|+|||--|.++-+. ++..++-++||+++|||++||.+ .|||++|++|+
T Consensus       163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~  242 (386)
T COG4175         163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE  242 (386)
T ss_pred             ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence            99999999999999999999999999999999999999999988 55555669999999999999965 89999999999


Q ss_pred             EEEecChhhhhhcCCcccHHHHHHh
Q psy10858        299 IIAQDSPDGFKSKYSMPKLSDVFYK  323 (457)
Q Consensus       299 I~~~gs~~~l~~~~~~~~l~~~f~~  323 (457)
                      |+..|+|+++..++..+++.+.+..
T Consensus       243 ivQ~Gtp~eIl~~PAndYV~~Fv~~  267 (386)
T COG4175         243 IVQVGTPEEILLNPANDYVRDFVRN  267 (386)
T ss_pred             EEEeCCHHHHHcCccHHHHHHHHhc
Confidence            9999999999998876666665543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2e-50  Score=382.36  Aligned_cols=206  Identities=30%  Similarity=0.461  Sum_probs=184.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...  ...++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~   76 (208)
T cd03268           1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA   76 (208)
T ss_pred             CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence            578999999987  7899999999999999999999999999999999999999999999999876532  234568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+||+||+.++...++..    .+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus        77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  152 (208)
T cd03268          77 LIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE  152 (208)
T ss_pred             ecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            999999999999999998876554432    345677889999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus       153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999988776679999999999999965 9999999999998754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=2.5e-50  Score=382.51  Aligned_cols=209  Identities=28%  Similarity=0.489  Sum_probs=187.5

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  ..+++|+||+|++| +++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++.++|
T Consensus         1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   76 (211)
T cd03264           1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY   76 (211)
T ss_pred             CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence            578999999987  78999999999999 99999999999999999999999999999999998775433 344678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+||.||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  156 (211)
T cd03264          77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE  156 (211)
T ss_pred             ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999998766666555555667888999999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.++++++.+++ +.|||++||+++++.. |||+++|++|++++.|
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         157 PTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999888765 5999999999999965 9999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-50  Score=404.76  Aligned_cols=223  Identities=25%  Similarity=0.323  Sum_probs=195.8

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--------
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--------  157 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--------  157 (457)
                      +|+++|++++|++..   ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+...        
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            489999999997521   259999999999999999999999999999999999999999999999865421        


Q ss_pred             ----------------CchhhhcCcEEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCC
Q psy10858        158 ----------------IYHKTAGSKVGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LER  218 (457)
Q Consensus       158 ----------------~~~~~~r~~IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~  218 (457)
                                      ......+++|||+||++ ..+...||+||+.|.....+.+.++..+++.++++.++|. . .++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                            01233467899999986 2334579999999877667788777788899999999995 4 789


Q ss_pred             CCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCC
Q psy10858        219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKG  297 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~G  297 (457)
                      ++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++. .||||++|++|
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G  241 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG  241 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999998887777999999999999985 59999999999


Q ss_pred             eEEEecChhhhhhc
Q psy10858        298 RIIAQDSPDGFKSK  311 (457)
Q Consensus       298 kI~~~gs~~~l~~~  311 (457)
                      ++++.|+++++...
T Consensus       242 ~i~~~g~~~~~~~~  255 (305)
T PRK13651        242 KIIKDGDTYDILSD  255 (305)
T ss_pred             EEEEECCHHHHhcC
Confidence            99999999988653

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-50  Score=399.83  Aligned_cols=221  Identities=28%  Similarity=0.380  Sum_probs=194.4

Q ss_pred             ceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chh
Q psy10858         89 ADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~  161 (457)
                      +|+++|++++|++.   .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...    ...
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            58999999999742   14699999999999999999999999999999999999999999999999877431    123


Q ss_pred             hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ..++.+||+||++  .++ .+||.||+.+....++...++..+++.++++.+++. . .++++.+|||||||||+||+||
T Consensus        82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence            3456899999997  355 589999998765555666666677788999999995 4 6899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999988877679999999999999865 99999999999999999998764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=2.6e-50  Score=397.85  Aligned_cols=220  Identities=25%  Similarity=0.381  Sum_probs=194.6

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh----hcCc
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT----AGSK  166 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~----~r~~  166 (457)
                      .++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......    .+++
T Consensus        26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~  103 (269)
T cd03294          26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK  103 (269)
T ss_pred             hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence            56799999998  88999999999999999999999999999999999999999999999998775432211    2457


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+||++.+++.+||.||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+||+||+++|++||
T Consensus       104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill  183 (269)
T cd03294         104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL  183 (269)
T ss_pred             EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999988765555555555567788999999964 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||||+|||+.+++.+++++..+.+ .|+|||++||+++++.. ||++++|++|++++.|+++++.+..
T Consensus       184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  252 (269)
T cd03294         184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP  252 (269)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence            9999999999999999999877654 48999999999999865 9999999999999999999987653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1e-49  Score=390.10  Aligned_cols=223  Identities=23%  Similarity=0.344  Sum_probs=197.2

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--------
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--------  158 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--------  158 (457)
                      +.+|+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...        
T Consensus         3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence            467999999999987  7899999999999999999999999999999999999999999999999876421        


Q ss_pred             -----chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHH
Q psy10858        159 -----YHKTAGSKVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRR  230 (457)
Q Consensus       159 -----~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQR  230 (457)
                           .....++++||+||++.+++.+||+||+.+.. ...+.......+++.++++.+++..  .++++.+||||||||
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr  160 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR  160 (257)
T ss_pred             cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence                 11234678999999999999999999998643 2344555556677888999999965  378899999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ++|||||+.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence            999999999999999999999999999999999988877779999999999999975 9999999999999999998876


Q ss_pred             hc
Q psy10858        310 SK  311 (457)
Q Consensus       310 ~~  311 (457)
                      ..
T Consensus       241 ~~  242 (257)
T PRK10619        241 GN  242 (257)
T ss_pred             hC
Confidence            54

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.7e-50  Score=381.94  Aligned_cols=208  Identities=29%  Similarity=0.419  Sum_probs=181.8

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM  170 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv  170 (457)
                      +++|++++|++.++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            36899999975335799999999999999999999999999999999999999999999999877543333456789999


Q ss_pred             cCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        171 PQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       171 pQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ||++. .++.+|++||+.+.....+.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  160 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE  160 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99985 3667899999987655555555555567788899999954 689999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      ||+|||+.+++.+++.++.++++|+|||++||+++++.. ||++++|++|+
T Consensus       161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999988776679999999999999976 99999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-49  Score=404.65  Aligned_cols=233  Identities=18%  Similarity=0.256  Sum_probs=202.7

Q ss_pred             cCceEEEeeEEEeCCC--------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC
Q psy10858         87 EEADEGKNTEKEELKP--------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI  158 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~--------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~  158 (457)
                      +++|+++||++.|+..        ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA   82 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence            3689999999999631        25799999999999999999999999999999999999999999999999987654


Q ss_pred             ch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHH
Q psy10858        159 YH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRR  230 (457)
Q Consensus       159 ~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQR  230 (457)
                      ..   ...+++|||+||++  .+.+.+||.+++....... ++...+..+++.++++.++|. . +++++++||||||||
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR  162 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR  162 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence            32   23467899999998  6889999999997655443 456666677889999999995 3 689999999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |+|||||+.+|++||+||||+|||+.++..+++++..+++ .|.|||++|||++++.. ||||++|++|+|++.|+++++
T Consensus       163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~  242 (327)
T PRK11308        163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI  242 (327)
T ss_pred             HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999777655 49999999999999975 999999999999999999999


Q ss_pred             hhcCCcccHHH
Q psy10858        309 KSKYSMPKLSD  319 (457)
Q Consensus       309 ~~~~~~~~l~~  319 (457)
                      .+....+....
T Consensus       243 ~~~p~hpyt~~  253 (327)
T PRK11308        243 FNNPRHPYTQA  253 (327)
T ss_pred             hcCCCCHHHHH
Confidence            87654444333

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.7e-50  Score=396.09  Aligned_cols=222  Identities=25%  Similarity=0.354  Sum_probs=195.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+++++|++++|++. ..+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++........++++
T Consensus         2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   80 (277)
T PRK13652          2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV   80 (277)
T ss_pred             ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            368999999999631 5699999999999999999999999999999999999999999999999887543333456789


Q ss_pred             EEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ||+||++. .+...||.||+.+.....+.+.+...+++.++++.+++.. .++.+.+||||||||++|||||+.+|++||
T Consensus        81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli  160 (277)
T PRK13652         81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV  160 (277)
T ss_pred             EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999974 3346799999987665556666666677889999999954 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||||+|||+.+++.++++++.+.++ |+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus       161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            99999999999999999998777654 899999999999985 599999999999999999998865

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-50  Score=392.41  Aligned_cols=220  Identities=22%  Similarity=0.315  Sum_probs=193.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+|
T Consensus         2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (258)
T PRK13548          2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA   79 (258)
T ss_pred             eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence            6899999999987  78999999999999999999999999999999999999999999999998765433333456899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh------cCC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL------HKP  241 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl------~~P  241 (457)
                      |+||++.+++.+||+||+.+.....+...+...+++.++++.+++.. .++.+.+|||||||||+||+||+      .+|
T Consensus        80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p  159 (258)
T PRK13548         80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP  159 (258)
T ss_pred             EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence            99999998888999999987644333333344456778899999954 68999999999999999999999      599


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ++|||||||+|||+.+++.++++++.+. ++|+|||++||+++++. .||++++|++|+++..|+++++.+
T Consensus       160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence            9999999999999999999999987766 67999999999999996 599999999999999999988764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-50  Score=394.11  Aligned_cols=225  Identities=20%  Similarity=0.276  Sum_probs=198.5

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      +.++++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++
T Consensus         4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   83 (269)
T PRK13648          4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK   83 (269)
T ss_pred             CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence            35689999999999753245999999999999999999999999999999999999999999999998875444444567


Q ss_pred             cEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        166 KVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       166 ~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      .+||+||++. +++..|+.+|+.+.....+.+.+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV  163 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            8999999985 6777899999987655555555556667888999999954 7889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||||||+|||+.+++.++++++.+.+ .|+|||++||+++++..|||+++|++|++++.|+++++.+
T Consensus       164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  231 (269)
T PRK13648        164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD  231 (269)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999999999999877655 4899999999999987799999999999999999988765

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=8.1e-50  Score=383.31  Aligned_cols=215  Identities=25%  Similarity=0.348  Sum_probs=188.0

Q ss_pred             CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---
Q psy10858         88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---  162 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~---  162 (457)
                      ++|+++|++++|++..  ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......   
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   84 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK   84 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence            5899999999997522  25999999999999999999999999999999999999999999999998775433221   


Q ss_pred             -hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 -AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 -~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                       .++.+||+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.. .++++.+||||||||++||+||+.+
T Consensus        85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~  164 (228)
T PRK10584         85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR  164 (228)
T ss_pred             HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence             23579999999999999999999987654445555556677888999999964 6889999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEe
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ  302 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~  302 (457)
                      |++|||||||+|||+.+++.++++++.+++ .|.|||++||++++++.||++++|++|++++.
T Consensus       165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999877654 48999999999999877999999999999753

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-50  Score=389.44  Aligned_cols=229  Identities=22%  Similarity=0.329  Sum_probs=195.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~  166 (457)
                      .+++++|++++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+..
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (255)
T PRK11300          4 PLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG   81 (255)
T ss_pred             ceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence            57999999999987  7899999999999999999999999999999999999999999999999887543322 23456


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh----------cCC-----CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI----------YGM-----DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRR  230 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l----------~g~-----~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQR  230 (457)
                      ++|+||++.+++.+||.||+.+....          ++.     ...+...++.++++.+++.. .++++.+||||||||
T Consensus        82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  161 (255)
T PRK11300         82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRR  161 (255)
T ss_pred             eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHH
Confidence            99999999999999999999875321          110     11123345677888999954 789999999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |+||+||+++|++|||||||+|||+.+++.+++++..++++ |+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus       162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  241 (255)
T PRK11300        162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI  241 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence            99999999999999999999999999999999998777665 8999999999999965 999999999999999999887


Q ss_pred             hhcCCcccHHHHH
Q psy10858        309 KSKYSMPKLSDVF  321 (457)
Q Consensus       309 ~~~~~~~~l~~~f  321 (457)
                      .+.   ..+.+.|
T Consensus       242 ~~~---~~~~~~~  251 (255)
T PRK11300        242 RNN---PDVIKAY  251 (255)
T ss_pred             hhC---hHHHHHH
Confidence            643   3345544

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-50  Score=386.88  Aligned_cols=227  Identities=22%  Similarity=0.374  Sum_probs=193.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~  166 (457)
                      ++++++|++++|++  +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   81 (237)
T PRK11614          4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA   81 (237)
T ss_pred             cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence            47999999999987  7899999999999999999999999999999999999999999999999887543322 24567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHc-CCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l-~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||++|++.+++.+||.||+.+.....  ......+++.++++.+ ++.. .++++.+|||||||||+|||||+.+|++|
T Consensus        82 i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il  159 (237)
T PRK11614         82 VAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL  159 (237)
T ss_pred             EEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            999999999999899999998753222  2223344556667776 4643 57889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      ||||||+|||+.+++.++++++.+.++|+|||++||+++++.. |||+++|++|+++..|+++++...   ..+.+.|
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---~~~~~~~  234 (237)
T PRK11614        160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN---EAVRSAY  234 (237)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC---HHHHHHh
Confidence            9999999999999999999988777779999999999999864 999999999999999999988642   3344544

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-50  Score=397.28  Aligned_cols=223  Identities=22%  Similarity=0.297  Sum_probs=196.3

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--Cchhhhc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--IYHKTAG  164 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--~~~~~~r  164 (457)
                      +++|+++|++++|+++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..  ......+
T Consensus         3 ~~~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~   81 (283)
T PRK13636          3 DYILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR   81 (283)
T ss_pred             CceEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence            3589999999999621 679999999999999999999999999999999999999999999999988742  1223456


Q ss_pred             CcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        165 SKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       165 ~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +.+||+||++. .+...||+||+.+....++.+.....+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus        82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~  161 (283)
T PRK13636         82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK  161 (283)
T ss_pred             hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            78999999973 2345799999988665566666666677889999999964 789999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||||||+|||+.+++.++++++.+.++ |+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus       162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999998776654 999999999999996 599999999999999999998765

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-50  Score=395.12  Aligned_cols=221  Identities=21%  Similarity=0.274  Sum_probs=193.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--CchhhhcCc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--IYHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--~~~~~~r~~  166 (457)
                      ||+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..  ......++.
T Consensus         1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   78 (271)
T PRK13638          1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ   78 (271)
T ss_pred             CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence            5899999999987  789999999999999999999999999999999999999999999999988742  112234578


Q ss_pred             EEEEcCCCCC-CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAM-FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L-~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++.+ +...|+.+|+.+.....+....+..+++.++++.+++.. .++++.+||||||||++||+||+.+|++|
T Consensus        79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll  158 (271)
T PRK13638         79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL  158 (271)
T ss_pred             eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999999863 345689999988665556655556667788999999954 68899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||||+|||+.++..++++++.+.++|+|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus       159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999988776679999999999999965 999999999999999999887653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-50  Score=395.21  Aligned_cols=224  Identities=23%  Similarity=0.305  Sum_probs=197.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      +++++++|++++|+++++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........+++
T Consensus         5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK   84 (271)
T ss_pred             ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence            36899999999996323679999999999999999999999999999999999999999999999988754333345678


Q ss_pred             EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++. .++.+||+||+.+.....+.+.++...++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus        85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  164 (271)
T PRK13632         85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII  164 (271)
T ss_pred             eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999984 6777899999987655445555556667888999999954 78999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.+++.++++++.++++ ++|||++||+++++..||++++|++|+++..|+++++..
T Consensus       165 lLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999999999998877655 599999999999987799999999999999999888754

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=6e-50  Score=379.95  Aligned_cols=209  Identities=25%  Similarity=0.326  Sum_probs=185.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhhcCc
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTAGSK  166 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~r~~  166 (457)
                      ++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....   ...++.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            4789999999642 579999999999999999999999999999999999999999999999987754321   234578


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ++|+||++.+++.+|++||+.+....++...+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI  159 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999988766555555556667888999999964 688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      |||||+|||+.+++.+++.++.+.++|+|||++||+++++.. ||++++|++|++
T Consensus       160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999988876679999999999999975 999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-50  Score=390.92  Aligned_cols=228  Identities=20%  Similarity=0.317  Sum_probs=196.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.+|
T Consensus         2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (255)
T PRK11231          2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA   79 (255)
T ss_pred             EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence            6899999999987  78999999999999999999999999999999999999999999999998765433334456799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        169 YMPQELAMFGELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |+||++.+++.+|+.||+.+...    .++.......+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus        80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  159 (255)
T PRK11231         80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV  159 (255)
T ss_pred             EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999888999999987521    123222334556778899999954 6899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      |||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|+++..|+++++.+.   ..++++|
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---~~~~~~~  235 (255)
T PRK11231        160 VLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP---GLLRTVF  235 (255)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH---HHHHHHh
Confidence            99999999999999999999988776679999999999999865 999999999999999999887642   3445555

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-49  Score=386.96  Aligned_cols=229  Identities=21%  Similarity=0.317  Sum_probs=195.3

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--  158 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--  158 (457)
                      ..++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+     |++|+|+++|+++...  
T Consensus         3 ~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   80 (253)
T PRK14242          3 SPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV   80 (253)
T ss_pred             CCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence            3578999999999987  789999999999999999999999999999999999974     6899999999877431  


Q ss_pred             chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHH
Q psy10858        159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRls  232 (457)
                      .....++.+||+||++.+|+ .||+||+.+.....+. ..+...+++.++++.+++..     .++.+.+|||||||||+
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~  159 (253)
T PRK14242         81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC  159 (253)
T ss_pred             CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence            22234678999999999887 5999999886554444 23344567778888888732     47889999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+.+|++|||||||+|||+.++..++++++.+. +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus       160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  238 (253)
T PRK14242        160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR  238 (253)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence            9999999999999999999999999999999988775 47999999999999865 999999999999999999988765


Q ss_pred             CCcccHH
Q psy10858        312 YSMPKLS  318 (457)
Q Consensus       312 ~~~~~l~  318 (457)
                      .....+.
T Consensus       239 ~~~~~~~  245 (253)
T PRK14242        239 PREKQTE  245 (253)
T ss_pred             CCchHHH
Confidence            4333333

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-49  Score=386.10  Aligned_cols=219  Identities=25%  Similarity=0.357  Sum_probs=193.7

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC------Cchhh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS------IYHKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~------~~~~~  162 (457)
                      +++++|++++|++  +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++..      .....
T Consensus         2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            6899999999987  789999999999999999999999999999999999999999999999987521      11123


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      .++.++|+||++.+++.+||.||+.+ ....++....+...++.++++.+++.. .++.+.+|||||||||+|||||+.+
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~  159 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME  159 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            45789999999999999999999975 333445555555667888899999964 6899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      |++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus       160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            99999999999999999999999988877679999999999999964 9999999999999999988764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-49  Score=386.71  Aligned_cols=220  Identities=23%  Similarity=0.302  Sum_probs=193.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCchhhh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~~~~~  163 (457)
                      +++++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++........
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   80 (250)
T PRK14247          3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL   80 (250)
T ss_pred             eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence            6899999999987  7899999999999999999999999999999999999974     79999999988754433445


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHHH
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      ++.+||+||++.+++.+||.||+.+.....+.  +..+..+++.++++.+++.     ..++.+.+|||||||||+||||
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara  160 (250)
T PRK14247         81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA  160 (250)
T ss_pred             hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence            67899999999988899999999876544332  3344556778889999984     2588999999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+.+|++|||||||+|||+.+++.++++++.+.+ |+|||++||+++++. .||++++|++|++++.|+++++.+.
T Consensus       161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14247        161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN  235 (250)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence            9999999999999999999999999999887754 899999999999986 5999999999999999999988754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-50  Score=397.46  Aligned_cols=222  Identities=21%  Similarity=0.340  Sum_probs=195.0

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chh
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~  161 (457)
                      +++++|++++|+++.   +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...    ...
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            489999999997421   3699999999999999999999999999999999999999999999999887432    123


Q ss_pred             hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ..+++|||+||++  .+++ .||.||+.+.....+.+.++..+++.++++.++|. . .++.+.+|||||||||+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            4567899999987  4555 59999998876656677777777888999999995 4 6889999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +.+|++|||||||+|||+.++..++++++.+.+ .|+|||++||+++++. .|||+++|++|++++.|+++++...
T Consensus       161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  236 (286)
T PRK13646        161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD  236 (286)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999877654 5999999999999985 5999999999999999999887653

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-50  Score=396.71  Aligned_cols=224  Identities=26%  Similarity=0.290  Sum_probs=199.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---eEEEEcCccCCCCchhhh
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ---GEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s---G~I~i~G~~~~~~~~~~~  163 (457)
                      +.+|+++|++++|++..+.+++||||+|++||++||+||||||||||+++|+|+++|++   |+|+++|.++........
T Consensus         3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence            46899999999997532469999999999999999999999999999999999999988   899999998764433345


Q ss_pred             cCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        164 GSKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       164 r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      ++++||+||++. +++.+||.||+.+.....+.+.++..+++.++++.+++.. .++++.+||||||||++||+||+.+|
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P  162 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP  162 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            678999999984 6778999999987655566666667778888999999964 78999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus       163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999877655 4999999999999997799999999999999999988764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=6.2e-50  Score=379.59  Aligned_cols=208  Identities=28%  Similarity=0.388  Sum_probs=184.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--CchhhhcCcE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--IYHKTAGSKV  167 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--~~~~~~r~~I  167 (457)
                      ++++|++++|++  +.+++++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++..  ......++.+
T Consensus         1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   78 (213)
T cd03262           1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV   78 (213)
T ss_pred             CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence            478999999987  789999999999999999999999999999999999999999999999987642  1223346789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +|+||++.+++.+|+.||+.+... .++.+..+..+++.++++.+++.. .++++.+|||||||||+||+||+++|++||
T Consensus        79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  158 (213)
T cd03262          79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML  158 (213)
T ss_pred             eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999999987643 335555555667788899999964 689999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      |||||+|||+.+++.++++++.+++.|+|||++||+++++.. ||++++|++|++
T Consensus       159 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         159 FDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999988877779999999999999965 999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-49  Score=402.88  Aligned_cols=233  Identities=19%  Similarity=0.249  Sum_probs=200.4

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCccCCCCchhh
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN----ISQGEIWVLGGHPASIYHKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~----p~sG~I~i~G~~~~~~~~~~  162 (457)
                      +|+++||++.|+...  ..||+||||+|++||++||+|+||||||||+++|+|+++    |++|+|+++|+++.......
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            689999999997632  369999999999999999999999999999999999997    48999999999876543222


Q ss_pred             ----hcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHHHH
Q psy10858        163 ----AGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKRRL  231 (457)
Q Consensus       163 ----~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQRl  231 (457)
                          .++.|||+||++  ++++.+|+.+++....... +...++..+++.++++.++|..    +++++++|||||||||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence                235799999998  5888999999887655443 4556666778889999999953    5889999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      +|||||+.+|++|||||||+|||+.++..++++++.+++ .|.|||++|||++++. .||||++|.+|+|++.|++++++
T Consensus       163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~  242 (326)
T PRK11022        163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF  242 (326)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999999877765 5999999999999996 59999999999999999999998


Q ss_pred             hcCCcccHHHHH
Q psy10858        310 SKYSMPKLSDVF  321 (457)
Q Consensus       310 ~~~~~~~l~~~f  321 (457)
                      +....++.....
T Consensus       243 ~~p~hpyt~~ll  254 (326)
T PRK11022        243 RAPRHPYTQALL  254 (326)
T ss_pred             hCCCChHHHHHH
Confidence            765555544443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-49  Score=410.99  Aligned_cols=216  Identities=27%  Similarity=0.404  Sum_probs=190.7

Q ss_pred             eEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc----cCCCCchh---h-hcCc
Q psy10858         95 TEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG----HPASIYHK---T-AGSK  166 (457)
Q Consensus        95 lsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~----~~~~~~~~---~-~r~~  166 (457)
                      +.++||.  ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+    ++...+..   . .+++
T Consensus        30 ~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~  107 (382)
T TIGR03415        30 ILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR  107 (382)
T ss_pred             HHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence            3455555  78999999999999999999999999999999999999999999999996    33322211   1 2367


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+||++.+++.+||+||+.+.....+.++.+..+++.++++.++|.. .++++.+|||||||||+|||||+++|+|||
T Consensus       108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL  187 (382)
T TIGR03415       108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL  187 (382)
T ss_pred             EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999998877777777777778889999999964 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||||+||||.+++.+++.+..+.+ .|+|||++|||++++.. ||||++|++|++++.|+++++..+.
T Consensus       188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p  256 (382)
T TIGR03415       188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP  256 (382)
T ss_pred             EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence            9999999999999999999776655 49999999999999865 9999999999999999999997653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-49  Score=402.85  Aligned_cols=224  Identities=27%  Similarity=0.314  Sum_probs=196.7

Q ss_pred             cCceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC-----
Q psy10858         87 EEADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-----  158 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-----  158 (457)
                      .++|+++|++++|+..   ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...     
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence            4689999999999742   13699999999999999999999999999999999999999999999999876432     


Q ss_pred             -----------chhhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCC
Q psy10858        159 -----------YHKTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYL  223 (457)
Q Consensus       159 -----------~~~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~L  223 (457)
                                 .....+++||||||++  .+++ .||+||+.+.....+.+.++..+++.++++.++++ . .++.+.+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L  177 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL  177 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence                       1234567899999997  4665 59999998865555666666677888899999995 3 78999999


Q ss_pred             ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEe
Q psy10858        224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQ  302 (457)
Q Consensus       224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~  302 (457)
                      ||||||||+|||||+.+|++|||||||+|||+.+++.+++++..+.++|+|||++||+++++. .||||++|++|++++.
T Consensus       178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~  257 (320)
T PRK13631        178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT  257 (320)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999998877667999999999999985 5999999999999999


Q ss_pred             cChhhhhhc
Q psy10858        303 DSPDGFKSK  311 (457)
Q Consensus       303 gs~~~l~~~  311 (457)
                      |+++++...
T Consensus       258 g~~~~~~~~  266 (320)
T PRK13631        258 GTPYEIFTD  266 (320)
T ss_pred             CCHHHHhcC
Confidence            999988653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.2e-49  Score=380.95  Aligned_cols=215  Identities=27%  Similarity=0.333  Sum_probs=182.8

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~  163 (457)
                      +|+++|++++|++.+  ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....   ...
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            578999999997621  279999999999999999999999999999999999999999999999988754331   234


Q ss_pred             cCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCH-HHHHHH-HHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        164 GSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDE-SIWLFQ-MRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       164 r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~-~~~~~~-~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++.+||++|++  .+++.+||++|+.+....++... ...... +.++++.+++. . .++++.+|||||||||+|||||
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            67899999998  56778999999987655443322 222222 35788889984 3 6889999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEec
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQD  303 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~g  303 (457)
                      +.+|++|||||||+|||+.+++.+++.++.+.++ |+|||++||+++++. .||++++|++|+++..|
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            9999999999999999999999999998777655 899999999999997 49999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-49  Score=385.98  Aligned_cols=221  Identities=25%  Similarity=0.326  Sum_probs=192.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCC--CCch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPA--SIYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~--~~~~  160 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++.  ....
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          3 FAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             ceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            47999999999987  7899999999999999999999999999999999999987     4999999998875  2222


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      ...++++||+||++.+++.+||.||+.+.....+.  +.+...+++.++++.+++.     ..++++.+||||||||++|
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  160 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI  160 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence            23457899999999999999999999876544332  3444556677888888873     2578999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (253)
T PRK14267        161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN  238 (253)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999887754 6999999999999865 999999999999999999988654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.6e-49  Score=384.86  Aligned_cols=222  Identities=23%  Similarity=0.339  Sum_probs=194.5

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----------
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----------  159 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----------  159 (457)
                      |+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++....          
T Consensus         1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (252)
T TIGR03005         1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD   78 (252)
T ss_pred             CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence            578999999987  78999999999999999999999999999999999999999999999998764321          


Q ss_pred             ---hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHH
Q psy10858        160 ---HKTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       160 ---~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA  234 (457)
                         ....++.++|++|++.+++.+|+.||+.+... ..+.......+.+.++++.+++.. .++.+.+||||||||++||
T Consensus        79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  158 (252)
T TIGR03005        79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA  158 (252)
T ss_pred             hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence               12346789999999999999999999987532 234455555567788899999954 6889999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||+.+|++|||||||+|||+.++..++++++.+.+ .|+|||++||+++++. .|||+++|++|++++.|+++++....
T Consensus       159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  238 (252)
T TIGR03005       159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP  238 (252)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence            999999999999999999999999999999877665 4899999999999986 59999999999999999999887654


Q ss_pred             C
Q psy10858        313 S  313 (457)
Q Consensus       313 ~  313 (457)
                      .
T Consensus       239 ~  239 (252)
T TIGR03005       239 K  239 (252)
T ss_pred             C
Confidence            3

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=3e-49  Score=389.64  Aligned_cols=226  Identities=19%  Similarity=0.235  Sum_probs=195.2

Q ss_pred             cCceEEEeeEEEeCCC-------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc
Q psy10858         87 EEADEGKNTEKEELKP-------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~-------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~  159 (457)
                      +++|+++||+++|++.       .+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++....
T Consensus         2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~   81 (267)
T PRK15112          2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD   81 (267)
T ss_pred             cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence            3689999999999631       246999999999999999999999999999999999999999999999998875322


Q ss_pred             hhhhcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELA--MFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA  234 (457)
                      ....++.+||+||++.  +++.+|+.+++.+..... ++......+++.++++.+++. . .++++.+|||||||||+||
T Consensus        82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  161 (267)
T PRK15112         82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA  161 (267)
T ss_pred             hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence            2333467999999975  677889999998765543 344445556788899999994 4 5788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      +||+++|++|||||||+|||+.+++.+++++..+.+ .|.|||++||+++++.. |||+++|++|+++..|+++++.+..
T Consensus       162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  241 (267)
T PRK15112        162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP  241 (267)
T ss_pred             HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence            999999999999999999999999999999877765 48999999999999975 9999999999999999999987653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-49  Score=387.78  Aligned_cols=211  Identities=27%  Similarity=0.369  Sum_probs=188.5

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..     ....+|
T Consensus         1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-----~~~~~~   73 (255)
T PRK11248          1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-----PGAERG   73 (255)
T ss_pred             CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC-----CCCcEE
Confidence            5899999999987  789999999999999999999999999999999999999999999999987643     124689


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |++|++.+++.+||.||+.+.....+....+..+++.++++.+++.. .++++.+|||||||||+||+||+++|++||||
T Consensus        74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD  153 (255)
T PRK11248         74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD  153 (255)
T ss_pred             EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999999987655556655555667888999999964 68899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecChh
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSPD  306 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~~  306 (457)
                      |||+|||+.+++.++++++.+. +.|+|||++||+++++.. ||++++|+  +|+++..++.+
T Consensus       154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            9999999999999999987764 458999999999999865 99999998  59999887653

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-49  Score=391.37  Aligned_cols=221  Identities=23%  Similarity=0.346  Sum_probs=193.0

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chh
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~  161 (457)
                      .|+++|++++|++..   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...    ...
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            489999999997521   3699999999999999999999999999999999999999999999999876532    123


Q ss_pred             hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        162 TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       162 ~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ..++.|||+||++  .+++ .||+||+.+....++.+.++..+++.++++.+++. . .++++.+|||||||||+||+||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            3467899999997  4554 69999998765555555555666778889999995 3 6899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+|++|||||||+|||+.+++.+++++..++++|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999988776679999999999999965 99999999999999999988765

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-49  Score=385.22  Aligned_cols=223  Identities=23%  Similarity=0.309  Sum_probs=192.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~  159 (457)
                      +.+++++|++++|++  +.+++|+||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|+++|.++...  .
T Consensus         5 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   82 (254)
T PRK14273          5 EAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD   82 (254)
T ss_pred             CceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence            358999999999987  7899999999999999999999999999999999999987     489999999876421  2


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++.+||+||++.+++ +||+||+.+.....+. ......+++.++++.+++.    . .++++.+|||||||||+|
T Consensus        83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l  161 (254)
T PRK14273         83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI  161 (254)
T ss_pred             HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence            2334678999999998885 8999999886544443 3344556677888888872    2 588999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. |||+++|++|++++.|+++++.+..
T Consensus       162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  240 (254)
T PRK14273        162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP  240 (254)
T ss_pred             HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence            999999999999999999999999999999988775 47999999999999865 9999999999999999999987654


Q ss_pred             C
Q psy10858        313 S  313 (457)
Q Consensus       313 ~  313 (457)
                      .
T Consensus       241 ~  241 (254)
T PRK14273        241 K  241 (254)
T ss_pred             C
Confidence            3

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-49  Score=390.13  Aligned_cols=222  Identities=24%  Similarity=0.268  Sum_probs=193.7

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........++.
T Consensus         9 ~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   86 (265)
T PRK10575          9 DTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK   86 (265)
T ss_pred             CceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence            368999999999987  789999999999999999999999999999999999999999999999987654333344678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh-c---CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI-Y---GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l-~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      ++|+||++.+++.+|+.||+.+.... .   +.......+++..+++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus        87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p  166 (265)
T PRK10575         87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS  166 (265)
T ss_pred             eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99999999888899999999875321 1   1112234456788899999954 78999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ++|||||||+|||+.+++.+++++..+.++ |.|||++||+++++. .||++++|++|+++..|+++++.+
T Consensus       167 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            999999999999999999999998777654 899999999999996 499999999999999999988754

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=5.4e-49  Score=400.13  Aligned_cols=235  Identities=20%  Similarity=0.287  Sum_probs=202.8

Q ss_pred             cCceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchh
Q psy10858         87 EEADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHK  161 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~  161 (457)
                      .++|+++|+++.|+.  +...+|+||||+|++||++||+|+||||||||+++|+|+++|+   +|+|+++|+++......
T Consensus        10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~   89 (330)
T PRK09473         10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK   89 (330)
T ss_pred             CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence            368999999999953  2257999999999999999999999999999999999999996   99999999988654322


Q ss_pred             h----hcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHHH
Q psy10858        162 T----AGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKRR  230 (457)
Q Consensus       162 ~----~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQR  230 (457)
                      .    .++.|+|+||++  .+++.+|+.+++......+ +.+..+..+++.++++.++|+.    .++++++||||||||
T Consensus        90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR  169 (330)
T PRK09473         90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR  169 (330)
T ss_pred             HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence            2    235799999998  6889999999997665544 4566666778888999999963    367999999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |+|||||+.+|++||+||||+|||+.++..++++++.++++ |.|||++|||++++.. ||||++|.+|+|++.|+++++
T Consensus       170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i  249 (330)
T PRK09473        170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV  249 (330)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999998777654 9999999999999965 999999999999999999999


Q ss_pred             hhcCCcccHHHHH
Q psy10858        309 KSKYSMPKLSDVF  321 (457)
Q Consensus       309 ~~~~~~~~l~~~f  321 (457)
                      .+....++....+
T Consensus       250 ~~~p~~pyt~~l~  262 (330)
T PRK09473        250 FYQPSHPYSIGLL  262 (330)
T ss_pred             HhCCCCHHHHHHH
Confidence            8876655555444

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-49  Score=392.63  Aligned_cols=224  Identities=24%  Similarity=0.345  Sum_probs=197.0

Q ss_pred             CceEEEeeEEEeCCC----CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhh
Q psy10858         88 EADEGKNTEKEELKP----SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKT  162 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~----~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~  162 (457)
                      ++++++|++++|++.    .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ...
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence            589999999999741    256999999999999999999999999999999999999999999999998875422 233


Q ss_pred             hcCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 AGSKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 ~r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      .++.+||+||++. .+...||.+|+.|.....+++..+..+++.++++.++|.. .++++.+|||||||||+||+||+.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            4678999999974 2234699999988766666666666778889999999954 7899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |++|||||||+|||+.++..++++++.+.+ .|+|||++||+++++..|||+++|++|++++.|+++++...
T Consensus       163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (280)
T PRK13633        163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE  234 (280)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            999999999999999999999999887755 59999999999999977999999999999999999988653

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2.3e-49  Score=380.62  Aligned_cols=214  Identities=27%  Similarity=0.403  Sum_probs=186.6

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~IG  168 (457)
                      |+++|+++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...... ..++.+|
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (230)
T TIGR03410         1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA   78 (230)
T ss_pred             CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence            578999999987  7899999999999999999999999999999999999999999999999877543322 2356799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-CCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |+||++.+++.+|+.||+.+....++...   .+...++++.++ +.. .++++.+||||||||++||+||+.+|++|||
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl  155 (230)
T TIGR03410        79 YVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL  155 (230)
T ss_pred             EeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            99999999999999999987655443322   223455666666 443 6889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||||+|||+.+++.+++++..++++ |+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999999999999998777654 8999999999999975 999999999999999998887

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-49  Score=382.40  Aligned_cols=220  Identities=23%  Similarity=0.315  Sum_probs=192.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhhc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      ++++++|+++.|++  +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++   |++|+|+++|+++........+
T Consensus         1 ~~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~   78 (246)
T PRK14269          1 MIAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR   78 (246)
T ss_pred             CceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence            36899999999987  789999999999999999999999999999999999974   7999999999987654434456


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      +.+||+||++.+|+ .|++||+.+.....+.  ......+++.++++.+++.    . .++.+.+|||||||||+|||||
T Consensus        79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  157 (246)
T PRK14269         79 KNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL  157 (246)
T ss_pred             hhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence            78999999999987 6999999886555443  2234455677889999984    2 5788999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +++|++|||||||+|||+.++..+++.+..+.+ |+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999877654 8999999999999865 999999999999999999998764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-49  Score=390.33  Aligned_cols=224  Identities=23%  Similarity=0.287  Sum_probs=197.3

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .+|+++|++++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++........++.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence            479999999999742 2459999999999999999999999999999999999999999999999988754333345678


Q ss_pred             EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++. +++..||.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll  162 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII  162 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999984 6777899999987655555555566677888999999954 68899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||||+|||+.+++.+++++..+.++ |+|||++||+++++..||++++|++|++++.|+++++...
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT  230 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999998777654 9999999999999977999999999999999999887653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-49  Score=388.16  Aligned_cols=223  Identities=22%  Similarity=0.314  Sum_probs=194.3

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      ...+|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........++
T Consensus         4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (265)
T PRK10253          4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR   81 (265)
T ss_pred             cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence            3468999999999987  78999999999999999999999999999999999999999999999998775433334456


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhh-hcC---CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGM-IYG---MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g---~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      .+||+||++.+++.+|++||+.+... ..+   ...+...+++.++++.+++.. .++.+.+||||||||++|||||+.+
T Consensus        82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~  161 (265)
T PRK10253         82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE  161 (265)
T ss_pred             heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence            89999999999999999999987421 111   112233456778899999954 7899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |++|||||||+|||+.+++.+++++..+.+ .|.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus       162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (265)
T PRK10253        162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT  233 (265)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence            999999999999999999999999877765 48999999999999865 99999999999999999988764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-49  Score=386.23  Aligned_cols=223  Identities=21%  Similarity=0.317  Sum_probs=193.5

Q ss_pred             cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC-
Q psy10858         85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI-  158 (457)
Q Consensus        85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~-  158 (457)
                      ..+.+|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|+++|+++... 
T Consensus        15 ~~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         15 ATEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             CCCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence            34678999999999987  7899999999999999999999999999999999999974     899999999887431 


Q ss_pred             -chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHH
Q psy10858        159 -YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRR  230 (457)
Q Consensus       159 -~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQR  230 (457)
                       .....++.+||+||++.+++. ||.||+.+....++.  +.....+++.++++.+++..     .++.+.+||||||||
T Consensus        93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  171 (267)
T PRK14235         93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR  171 (267)
T ss_pred             cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence             223346789999999998875 999999876544443  23344566788899999842     478899999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      |+|||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus       172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14235        172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF  250 (267)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999999999999999999999887754 7899999999999965 9999999999999999999887


Q ss_pred             hc
Q psy10858        310 SK  311 (457)
Q Consensus       310 ~~  311 (457)
                      ..
T Consensus       251 ~~  252 (267)
T PRK14235        251 TN  252 (267)
T ss_pred             hC
Confidence            54

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-49  Score=389.40  Aligned_cols=221  Identities=24%  Similarity=0.345  Sum_probs=192.5

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcCc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~~  166 (457)
                      +|+++|++++|++. +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...  .....++.
T Consensus         1 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          1 ILETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             CEEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            58899999999631 5799999999999999999999999999999999999999999999999887421  12234678


Q ss_pred             EEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      |||+||++. .+..+||.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  159 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII  159 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999973 3345799999987544445555556667888999999964 78999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.++..+++++..+.++|.|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus       160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999998877667999999999999986 499999999999999999998764

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-49  Score=382.23  Aligned_cols=217  Identities=26%  Similarity=0.385  Sum_probs=190.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+++++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   79 (241)
T PRK14250          2 NEIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI   79 (241)
T ss_pred             ceEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence            35899999999987  7899999999999999999999999999999999999999999999999887543333456789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ||+||++.+++ .|++||+.+.....+.    ...++.++++.+++. . .++.+.+|||||||||+||+||+.+|++||
T Consensus        80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  154 (241)
T PRK14250         80 GMVFQQPHLFE-GTVKDNIEYGPMLKGE----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL  154 (241)
T ss_pred             EEEecCchhch-hhHHHHHhcchhhcCc----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999886 6999999865433221    134567788899995 3 688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+|||+.+++.+++.++.+++ .|+|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence            9999999999999999999887765 49999999999999865 999999999999999999988754

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-49  Score=384.63  Aligned_cols=229  Identities=24%  Similarity=0.336  Sum_probs=197.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC--Cch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS--IYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~--~~~  160 (457)
                      .+++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|.++..  ...
T Consensus        12 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         12 SKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             ceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            57999999999987  789999999999999999999999999999999999986     589999999988742  122


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++++||+||++.+++ +|++||+.+....+ +.+..+..+++.++++.+++.    . .++.+.+||||||||++||
T Consensus        90 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  168 (260)
T PRK10744         90 ALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA  168 (260)
T ss_pred             HHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence            344678999999999887 89999998765443 455555566788889999873    2 5788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. |||+++|++|++++.|+++++.+...
T Consensus       169 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  247 (260)
T PRK10744        169 RGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA  247 (260)
T ss_pred             HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence            99999999999999999999999999999988775 47899999999999865 99999999999999999999876544


Q ss_pred             cccHHHH
Q psy10858        314 MPKLSDV  320 (457)
Q Consensus       314 ~~~l~~~  320 (457)
                      .+.+.+.
T Consensus       248 ~~~~~~~  254 (260)
T PRK10744        248 KKQTEDY  254 (260)
T ss_pred             cHHHHHH
Confidence            4444443

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.4e-49  Score=385.44  Aligned_cols=219  Identities=19%  Similarity=0.291  Sum_probs=192.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus         2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (256)
T TIGR03873         2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL   79 (256)
T ss_pred             ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence            679999999987  789999999999999999999999999999999999999999999999988755443344567999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        170 MPQELAMFGELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||++.+++.+||.||+.++..    .++....+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  159 (256)
T TIGR03873        80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL  159 (256)
T ss_pred             ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999988888999999987532    122222333456778899999954 68999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.+++.++++++.++++|.|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            999999999999999999998887777999999999999996 599999999999999999988754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=5.5e-49  Score=387.15  Aligned_cols=222  Identities=24%  Similarity=0.312  Sum_probs=193.1

Q ss_pred             ceEEEeeEEEeCCC-------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh
Q psy10858         89 ADEGKNTEKEELKP-------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~-------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~  161 (457)
                      +|+++||+++|+..       ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++......
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            68999999999631       26799999999999999999999999999999999999999999999999877543221


Q ss_pred             ---hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHH
Q psy10858        162 ---TAGSKVGYMPQEL--AMFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       162 ---~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsL  233 (457)
                         ..++.|||+||++  .+++.+||.||+.+.... .++......+++.++++.+++. . .++++.+|||||||||+|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence               2456799999997  467789999999765432 2444444556788899999995 4 689999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||+++|++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence            99999999999999999999999999999998777654 8999999999999974 99999999999999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.2e-49  Score=374.80  Aligned_cols=202  Identities=30%  Similarity=0.339  Sum_probs=176.1

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM  170 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv  170 (457)
                      +++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..   ...++++||+
T Consensus         1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~   76 (205)
T cd03226           1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV   76 (205)
T ss_pred             CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence            368999999752 469999999999999999999999999999999999999999999999987643   2345689999


Q ss_pred             cCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        171 PQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       171 pQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ||++. .+..+|++||+.++....+.    ..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus        77 ~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  152 (205)
T cd03226          77 MQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE  152 (205)
T ss_pred             ecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            99974 23467999999876543331    1245778899999964 789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII  300 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~  300 (457)
                      ||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++
T Consensus       153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            999999999999999988876779999999999999975 9999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=6.4e-49  Score=379.72  Aligned_cols=218  Identities=24%  Similarity=0.247  Sum_probs=188.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhh-hcCc
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKT-AGSK  166 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~-~r~~  166 (457)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|.++|+++....... .+..
T Consensus         1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (243)
T TIGR01978         1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG   78 (243)
T ss_pred             CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence            578999999987  78999999999999999999999999999999999995  799999999998775433222 2345


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcC-------CCHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYG-------MDESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSFTIA  236 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-------~~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsLA~A  236 (457)
                      ++|+||++.+++.+|+.||+.+......       .+..+..+++.++++.++++ . .++.+. +|||||||||+||+|
T Consensus        79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a  158 (243)
T TIGR01978        79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM  158 (243)
T ss_pred             eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence            9999999999999999999987543221       12234456678889999996 3 577887 599999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhhh
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l~  309 (457)
                      |+.+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++..  ||++++|++|+++..|+++++.
T Consensus       159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            999999999999999999999999999988877779999999999999964  7999999999999999887543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-48  Score=397.80  Aligned_cols=228  Identities=17%  Similarity=0.231  Sum_probs=193.1

Q ss_pred             CceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCccCCCCchh
Q psy10858         88 EADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN----ISQGEIWVLGGHPASIYHK  161 (457)
Q Consensus        88 ~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~----p~sG~I~i~G~~~~~~~~~  161 (457)
                      ++|+++||+++|+.  +...||+||||+|++||++||+|+||||||||+++|+|+++    |++|+|+++|+++......
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            37999999999942  12679999999999999999999999999999999999996    5899999999987653322


Q ss_pred             h----hcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhc---C---CCHHHHHHHHHHHHhHcCCCC----CCCCCCCCCh
Q psy10858        162 T----AGSKVGYMPQELA--MFGELTIKETLNFFGMIY---G---MDESIWLFQMRKYSHVLKLPN----LERPVKYLSG  225 (457)
Q Consensus       162 ~----~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~---g---~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSG  225 (457)
                      .    .++.||||||++.  +++.+||.+++.+....+   +   ....+..+++.++++.++|..    +++++.+|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence            1    2457999999985  678899999997543211   1   112344567888999999953    4789999999


Q ss_pred             hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||||||+||+||+.+|++|||||||+|||+.++.+++++++.+.+ .|.|||+||||++++.. ||||++|++|+|++.|
T Consensus       162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g  241 (330)
T PRK15093        162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA  241 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence            999999999999999999999999999999999999999887766 49999999999999965 9999999999999999


Q ss_pred             ChhhhhhcCCcc
Q psy10858        304 SPDGFKSKYSMP  315 (457)
Q Consensus       304 s~~~l~~~~~~~  315 (457)
                      +++++.+....+
T Consensus       242 ~~~~i~~~p~~~  253 (330)
T PRK15093        242 PSKELVTTPHHP  253 (330)
T ss_pred             CHHHHHhCCCCH
Confidence            999988754433

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-48  Score=384.88  Aligned_cols=231  Identities=22%  Similarity=0.305  Sum_probs=193.7

Q ss_pred             cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC-
Q psy10858         85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI-  158 (457)
Q Consensus        85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~-  158 (457)
                      ...++++++|++++|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|+++|+++... 
T Consensus        17 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   94 (268)
T PRK14248         17 AKEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN   94 (268)
T ss_pred             CCCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence            34568999999999987  789999999999999999999999999999999999864     7999999999887532 


Q ss_pred             -chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHHH
Q psy10858        159 -YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRRL  231 (457)
Q Consensus       159 -~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQRl  231 (457)
                       .....++.+||+||++.+++. |++||+.+.....+.. .....+.+.++++.+++.    . .++++.+||||||||+
T Consensus        95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl  173 (268)
T PRK14248         95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL  173 (268)
T ss_pred             ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence             222346789999999998875 9999998764433322 223345566777777773    2 5788999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||||+.+|++|||||||+|||+.+++.++++++.+.+ +.|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus       174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  252 (268)
T PRK14248        174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT  252 (268)
T ss_pred             HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999999999999887754 6899999999999864 99999999999999999999876


Q ss_pred             cCCcccHHH
Q psy10858        311 KYSMPKLSD  319 (457)
Q Consensus       311 ~~~~~~l~~  319 (457)
                      ......+.+
T Consensus       253 ~~~~~~~~~  261 (268)
T PRK14248        253 SPKQQKTED  261 (268)
T ss_pred             CCCChHHHH
Confidence            543334443

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-48  Score=382.88  Aligned_cols=223  Identities=21%  Similarity=0.306  Sum_probs=193.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCC--Cc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPAS--IY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~--~~  159 (457)
                      .++|+++|+++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++  |   ++|+|+++|+++..  ..
T Consensus        10 ~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~   87 (259)
T PRK14274         10 QEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD   87 (259)
T ss_pred             CceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence            468999999999987  789999999999999999999999999999999999987  3   69999999987742  12


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++.+||+||++.+++. ||+||+.+....++. +.++..+++.++++.+++.     ..++.+.+||||||||++|
T Consensus        88 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~l  166 (259)
T PRK14274         88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCI  166 (259)
T ss_pred             HHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence            22346789999999998875 999999876555553 3344556677788888873     2578999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||+++|++|||||||+|||+.++..+++++..+.+ ++|||++||+++++.. |||+++|++|++++.|+++++..+.
T Consensus       167 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  245 (259)
T PRK14274        167 ARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP  245 (259)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence            9999999999999999999999999999999888754 7999999999999865 9999999999999999999987653


Q ss_pred             C
Q psy10858        313 S  313 (457)
Q Consensus       313 ~  313 (457)
                      .
T Consensus       246 ~  246 (259)
T PRK14274        246 D  246 (259)
T ss_pred             C
Confidence            3

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-48  Score=377.24  Aligned_cols=225  Identities=22%  Similarity=0.287  Sum_probs=191.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      |++++|++++|++  ..  .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.....  .++.+|
T Consensus         1 ~l~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   74 (232)
T PRK10771          1 MLKLTDITWLYHH--LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS   74 (232)
T ss_pred             CeEEEEEEEEECC--cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence            5889999999986  43  39999999999999999999999999999999999999999999987654322  246799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+++.+|+.||+.+.........+...+++.++++.+++.. .++++.+||||||||++||+||+.+|++||||
T Consensus        75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  154 (232)
T PRK10771         75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD  154 (232)
T ss_pred             EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999999976532110112234556788899999954 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      |||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++.+.   ..+.+.|.
T Consensus       155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~---~~~~~~~~  228 (232)
T PRK10771        155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG---KASASALL  228 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC---hhHHHHhh
Confidence            99999999999999999877654 48999999999999865 999999999999999999988754   24555553

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-48  Score=379.93  Aligned_cols=228  Identities=23%  Similarity=0.313  Sum_probs=195.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~~  160 (457)
                      ++++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|+++|.++...  ..
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          3 IKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             cEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            68999999999987  7899999999999999999999999999999999999875     899999999887432  12


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++ +|++||+.+.....+. ...+...++.++++.+++.     ..++.+.+||||||||++||
T Consensus        81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  159 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA  159 (251)
T ss_pred             HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence            234678999999999887 8999999876655554 2344455677788888873     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      +||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|++++.|+++++.....
T Consensus       160 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~  238 (251)
T PRK14270        160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ  238 (251)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCC
Confidence            999999999999999999999999999999887765 6899999999999865 99999999999999999999876533


Q ss_pred             cccHHH
Q psy10858        314 MPKLSD  319 (457)
Q Consensus       314 ~~~l~~  319 (457)
                      .+.+.+
T Consensus       239 ~~~~~~  244 (251)
T PRK14270        239 KKETED  244 (251)
T ss_pred             ChHHHH
Confidence            334444

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=2.9e-49  Score=375.79  Aligned_cols=205  Identities=27%  Similarity=0.414  Sum_probs=176.7

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM  170 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv  170 (457)
                      +++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.     ..++++||+
T Consensus         1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v   73 (213)
T cd03235           1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV   73 (213)
T ss_pred             CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence            36899999987  78999999999999999999999999999999999999999999999997653     245689999


Q ss_pred             cCCCCCC--CCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        171 PQELAMF--GELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       171 pQ~~~L~--~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ||++.++  ..+||+||+.+.....    +...+...+++.++++.+++.. .++++.+|||||||||+||+||+.+|++
T Consensus        74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  153 (213)
T cd03235          74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL  153 (213)
T ss_pred             ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            9998764  3479999998754321    1122334566788899999954 6889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      |||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++| +++.|
T Consensus       154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            99999999999999999999988776679999999999999965 9999999876 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-48  Score=381.26  Aligned_cols=221  Identities=22%  Similarity=0.346  Sum_probs=192.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~~  160 (457)
                      .+++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|     ++|+|+++|.++..  ...
T Consensus         3 ~~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          3 KRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             ccEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            47999999999987  7899999999999999999999999999999999999974     79999999987642  122


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||++|++.+++.+||+||+.+....++. +.+...+++.++++.+++.     ..++.+.+|||||||||+||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA  160 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence            34467899999999999999999999876554443 3444556677888888873     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEe------CCeEEEecChhh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLY------KGRIIAQDSPDG  307 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~------~GkI~~~gs~~~  307 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.++ +++|||++||+++++. .|||+++|+      +|+|++.|++++
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~  239 (258)
T PRK14241        161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK  239 (258)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence            99999999999999999999999999999988775 4689999999999986 599999997      799999999998


Q ss_pred             hhhc
Q psy10858        308 FKSK  311 (457)
Q Consensus       308 l~~~  311 (457)
                      +...
T Consensus       240 ~~~~  243 (258)
T PRK14241        240 IFSN  243 (258)
T ss_pred             HHhC
Confidence            8654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-48  Score=378.81  Aligned_cols=228  Identities=22%  Similarity=0.278  Sum_probs=193.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NI---SQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p---~sG~I~i~G~~~~~~--~~  160 (457)
                      ++++++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|+++|+++...  ..
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14239          4 PILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT   81 (252)
T ss_pred             ceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence            57999999999987  78999999999999999999999999999999999995  36   599999999877431  12


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++ +||+||+.+.....+.. .....+++.++++.+++.     ..++.+.+|||||||||+||
T Consensus        82 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14239         82 VDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA  160 (252)
T ss_pred             HhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence            234568999999999887 89999998765544543 233455677788888863     25789999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|++++.|+++++.+...
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  239 (252)
T PRK14239        161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPK  239 (252)
T ss_pred             HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence            999999999999999999999999999999887754 6999999999999864 99999999999999999999876543


Q ss_pred             cccHHH
Q psy10858        314 MPKLSD  319 (457)
Q Consensus       314 ~~~l~~  319 (457)
                      .....+
T Consensus       240 ~~~~~~  245 (252)
T PRK14239        240 HKETED  245 (252)
T ss_pred             CHHHHH
Confidence            333444

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.5e-48  Score=382.95  Aligned_cols=233  Identities=21%  Similarity=0.304  Sum_probs=197.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCC-----c
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASI-----Y  159 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~-----~  159 (457)
                      ++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|+   +|+|+++|.++...     .
T Consensus         3 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          3 TIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             cEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            58999999999987  88999999999999999999999999999999999999986   49999999876432     1


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh--------cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMI--------YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRR  230 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l--------~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQR  230 (457)
                      ....++++||+||++.+++.+||.||+.+....        .+........++.++++.+++.. .++.+.+||||||||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  160 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR  160 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence            123456799999999999999999999865321        11112334556788999999954 689999999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l  308 (457)
                      |+|||||+.+|++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++. .|||+++|++|++++.|+++++
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            9999999999999999999999999999999999887764 4899999999999985 4999999999999999999886


Q ss_pred             hhcCCcccHHHHHHhhhc
Q psy10858        309 KSKYSMPKLSDVFYKITN  326 (457)
Q Consensus       309 ~~~~~~~~l~~~f~~~~~  326 (457)
                      .    .+.+.+.|.....
T Consensus       241 ~----~~~~~~~~~~~~~  254 (262)
T PRK09984        241 D----NERFDHLYRSINR  254 (262)
T ss_pred             c----cHHHHHHHhhhhc
Confidence            2    2456667765543

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-49  Score=375.95  Aligned_cols=229  Identities=26%  Similarity=0.381  Sum_probs=199.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~  166 (457)
                      ++++++||+..||.  ..||++|||+|++|||++|+|+||||||||||+|+|+.++.+|+|.++|++++... ....+..
T Consensus         2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G   79 (237)
T COG0410           2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG   79 (237)
T ss_pred             CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence            68999999999999  99999999999999999999999999999999999999999999999999998653 4556789


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-CC-CCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LP-NLERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      |+||||...+|+.|||+|||.+.+....- +......++++.+.|- |. ..+++.++|||||||.++|||||+.+|++|
T Consensus        80 i~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL  158 (237)
T COG0410          80 IAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL  158 (237)
T ss_pred             eEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999999987554322 1111222556666664 32 368999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      +|||||.||-|.-.++|.+.++.++++ |+||++|.++...|. .+||.++|.+|+|+.+|+.+++.+.   +.+.+.|+
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~---~~v~~~yL  235 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD---PDVREAYL  235 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC---HHHHHHhh
Confidence            999999999999999999998888755 889999999999996 5999999999999999999999865   34666665

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.7e-48  Score=373.27  Aligned_cols=219  Identities=30%  Similarity=0.465  Sum_probs=192.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...    .++.++|
T Consensus         1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~~~~~~~   74 (223)
T TIGR03740         1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----DLHKIGS   74 (223)
T ss_pred             CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----ccccEEE
Confidence            578999999987  7899999999999999999999999999999999999999999999999876421    1257999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+|++||+.++...++.+.    .++.++++.+++.. .++.+.+||||||||++|||||+.+|++|||||
T Consensus        75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE  150 (223)
T TIGR03740        75 LIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE  150 (223)
T ss_pred             EcCCCCccccCCHHHHHHHHHHHcCCCH----HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            9999999999999999987765555432    34667888999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhh
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKI  324 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~  324 (457)
                      ||+|||+.+++.+++++..+.++|+|||++||+++++. .|||+++|++|++++.|++.+      ...+++.|.++
T Consensus       151 P~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~------~~~~~~~~~~~  221 (223)
T TIGR03740       151 PTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK------SENLEKLFVEV  221 (223)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh------cccHHHHHHHh
Confidence            99999999999999998877667999999999999996 499999999999999998764      24466777654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=8.9e-49  Score=371.93  Aligned_cols=208  Identities=25%  Similarity=0.299  Sum_probs=179.6

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.  .|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....  .++.+||
T Consensus         1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~   74 (211)
T cd03298           1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM   74 (211)
T ss_pred             CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence            478999999986  44  39999999999999999999999999999999999999999999987754322  3467999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ++|++.+++.+|++||+.+.........+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus        75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE  154 (211)
T cd03298          75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE  154 (211)
T ss_pred             EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999987543211112234556788899999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.++++++.+.+ .|+|||++||+++++.. |||+++|++|++++.|
T Consensus       155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            9999999999999999877654 48999999999999965 9999999999998653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-48  Score=379.10  Aligned_cols=229  Identities=21%  Similarity=0.263  Sum_probs=195.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~~--~~  160 (457)
                      ..|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++  |   ++|+|+++|.++...  ..
T Consensus         3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   80 (252)
T PRK14256          3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP   80 (252)
T ss_pred             cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence            35899999999987  789999999999999999999999999999999999986  4   699999999887432  12


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++.+|+.||+.+.....+ .+..+..+++.++++.+++.     ..++.+.+|||||||||+||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  160 (252)
T PRK14256         81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA  160 (252)
T ss_pred             HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence            2346789999999999999999999987544444 23344456677888888873     24678999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++. .|||+++|++|++++.|+++++.....
T Consensus       161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~  239 (252)
T PRK14256        161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE  239 (252)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence            999999999999999999999999999999888765 689999999999986 499999999999999999999876544


Q ss_pred             cccHHH
Q psy10858        314 MPKLSD  319 (457)
Q Consensus       314 ~~~l~~  319 (457)
                      .....+
T Consensus       240 ~~~~~~  245 (252)
T PRK14256        240 KKQTED  245 (252)
T ss_pred             cHHHHH
Confidence            443443

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-48  Score=384.36  Aligned_cols=225  Identities=20%  Similarity=0.272  Sum_probs=192.1

Q ss_pred             cccccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC
Q psy10858         83 KEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS  157 (457)
Q Consensus        83 ~~~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~  157 (457)
                      +.....+|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..
T Consensus         7 ~~~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~   84 (269)
T PRK14259          7 KISKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD   84 (269)
T ss_pred             CCCCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence            3445578999999999987  789999999999999999999999999999999999987     699999999987642


Q ss_pred             --CchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC----C-CCCCCCCCChhHHHH
Q psy10858        158 --IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP----N-LERPVKYLSGGQKRR  230 (457)
Q Consensus       158 --~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~----~-~~~~~~~LSGGqkQR  230 (457)
                        ......++.+||+||++.+|+ .||+||+.+.....+... ...+++.++++.+++.    . .++++.+||||||||
T Consensus        85 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  162 (269)
T PRK14259         85 PRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR  162 (269)
T ss_pred             ccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence              122344678999999999887 499999988765544432 2344566677777762    2 588899999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC-----------Ce
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK-----------GR  298 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~-----------Gk  298 (457)
                      |+|||||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. |||+++|++           |+
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~  241 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY  241 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence            999999999999999999999999999999999988775 47999999999999965 999999996           67


Q ss_pred             EEEecChhhhhhcC
Q psy10858        299 IIAQDSPDGFKSKY  312 (457)
Q Consensus       299 I~~~gs~~~l~~~~  312 (457)
                      +++.|+++++.+..
T Consensus       242 ~~~~~~~~~~~~~~  255 (269)
T PRK14259        242 LVEFNETKKIFNSP  255 (269)
T ss_pred             EEEeCCHHHHHhCc
Confidence            89999999987643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-48  Score=378.24  Aligned_cols=227  Identities=22%  Similarity=0.320  Sum_probs=193.5

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cchh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~~~  161 (457)
                      .|+++|+++.|++  +.+++|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|+++|+++..  ....
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14240          3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN   80 (250)
T ss_pred             eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence            5899999999987  7899999999999999999999999999999999999763     79999999988753  1222


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHH
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ..++.+||+||++.+++ +|++||+.+....++. +.+...+++.++++.+++.     ..++++.+||||||||++|||
T Consensus        81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  159 (250)
T PRK14240         81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR  159 (250)
T ss_pred             HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence            34678999999999887 8999999886555554 2334556677778888763     247889999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM  314 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~  314 (457)
                      ||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++.. |||+++|++|++++.|+++++......
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~  238 (250)
T PRK14240        160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKD  238 (250)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence            9999999999999999999999999999988775 48999999999999865 999999999999999999988765433


Q ss_pred             ccHHH
Q psy10858        315 PKLSD  319 (457)
Q Consensus       315 ~~l~~  319 (457)
                      ..+.+
T Consensus       239 ~~~~~  243 (250)
T PRK14240        239 KRTED  243 (250)
T ss_pred             hHHHH
Confidence            44444

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-48  Score=377.86  Aligned_cols=221  Identities=20%  Similarity=0.304  Sum_probs=191.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNI--SQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl---l~p--~sG~I~i~G~~~~~~--~~  160 (457)
                      ++|+++|+++.|++  +.+++|+||+|++||++||+||||||||||+|+|+|+   .+|  ++|+|.++|+++...  ..
T Consensus         2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            58999999999987  7899999999999999999999999999999999997   455  589999999887532  12


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++ .|+.||+.+....++.. .+...+++.++++.+++..     .++++.+||||||||++||
T Consensus        80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  158 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA  158 (250)
T ss_pred             HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence            334678999999998887 69999998765544433 2334566778888888842     5788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++. .|||+++|++|++++.|+++++.+..
T Consensus       159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~  236 (250)
T PRK14245        159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP  236 (250)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence            99999999999999999999999999999988874 4799999999999985 49999999999999999999987653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=3.5e-48  Score=379.48  Aligned_cols=222  Identities=20%  Similarity=0.246  Sum_probs=191.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc-----CCCCchhh
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHKT  162 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~-----~~~~~~~~  162 (457)
                      ++|+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|.+     +.......
T Consensus         5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          5 PLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             ceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            57999999999987  789999999999999999999999999999999999999999999999987     54332221


Q ss_pred             ----hcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHH
Q psy10858        163 ----AGSKVGYMPQELA--MFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       163 ----~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsL  233 (457)
                          .++.+||+||++.  +++.+|+.+|+.+....++. .......++.++++.+++.  ..++.+.+|||||||||+|
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l  162 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence                2457999999984  67778999999764333322 2234456678889999995  3689999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|++|||||||+|||+.+++.+++.++.+.++ |.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus       163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  242 (258)
T PRK11701        163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD  242 (258)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999998776554 8999999999999974 999999999999999999988754

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=2.7e-48  Score=374.66  Aligned_cols=218  Identities=30%  Similarity=0.387  Sum_probs=195.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.....  .++.+||
T Consensus         1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~   76 (232)
T cd03300           1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT   76 (232)
T ss_pred             CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence            468999999987  789999999999999999999999999999999999999999999999987754322  3568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ++|++.+++.+|+.+|+.+....++.......+++..+++.+++.. .++.+.+||+||||||+|||||+.+|++|||||
T Consensus        77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE  156 (232)
T cd03300          77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE  156 (232)
T ss_pred             EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999987665556555556667788899999954 788999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+|||+.+++.++++++.+.++ |+|||++||+++++.. |||+++|++|++.+.|+++++...
T Consensus       157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            99999999999999998777654 9999999999999865 999999999999999998887654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=3.3e-48  Score=375.09  Aligned_cols=217  Identities=27%  Similarity=0.441  Sum_probs=193.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  . +++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.....  .++.+||
T Consensus         1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~   75 (235)
T cd03299           1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY   75 (235)
T ss_pred             CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence            568999999986  4 8999999999999999999999999999999999999999999999988754322  3568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus        76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  155 (235)
T cd03299          76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE  155 (235)
T ss_pred             EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            9999999999999999987655555555556667788899999954 789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+|||+.+++.+|++++.+.++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus       156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            99999999999999997776554 9999999999999864 999999999999999999888654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0059|consensus

Probab=100.00  E-value=1.6e-49  Score=448.69  Aligned_cols=228  Identities=32%  Similarity=0.504  Sum_probs=213.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC-chhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI-YHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~-~~~~~r~~  166 (457)
                      .++.++|++|.|+..+. |++++||.|++|||+|++|+|||||||++|||+|..+|++|++++.|.++... +....++.
T Consensus       563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~  641 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ  641 (885)
T ss_pred             ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence            67999999999998322 99999999999999999999999999999999999999999999999887643 22346789


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +|||||++++++.+|.+|+|.++++++|++.+++.+.++.+++.++| ++++++++.||||+|||+++|.|++.+|++++
T Consensus       642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~  721 (885)
T KOG0059|consen  642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL  721 (885)
T ss_pred             cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence            99999999999999999999999999999999999999999999999 45899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCccc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK  316 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~  316 (457)
                      |||||+||||.+|+.+|+++..++++|++||+|||.|+|++. |||+++|.+|++.+.|++++++++++...
T Consensus       722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy  793 (885)
T KOG0059|consen  722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGY  793 (885)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcE
Confidence            999999999999999999999998888899999999999997 99999999999999999999999987543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-48  Score=400.31  Aligned_cols=214  Identities=23%  Similarity=0.336  Sum_probs=188.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r  164 (457)
                      ||++ |++|+|++  +. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....    ....+
T Consensus         1 ~l~~-~l~k~~~~--~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   75 (352)
T PRK11144          1 MLEL-NFKQQLGD--LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK   75 (352)
T ss_pred             CeEE-EEEEEeCC--EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence            5778 99999987  54 3 899999999999999999999999999999999999999999998764311    12235


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +++||+||++.+|+.+||+||+.+...      ....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus        76 ~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l  149 (352)
T PRK11144         76 RRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL  149 (352)
T ss_pred             CCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            789999999999999999999987532      123456788899999965 7899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||+|||+.+++.+++.++.+.++ |+|||++|||++++.. |||+++|++|+++..|+++++.+...
T Consensus       150 lLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~  221 (352)
T PRK11144        150 LLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA  221 (352)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence            9999999999999999999998776654 8999999999999965 99999999999999999999987643

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-48  Score=387.87  Aligned_cols=222  Identities=25%  Similarity=0.327  Sum_probs=190.7

Q ss_pred             CceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----C-c
Q psy10858         88 EADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----I-Y  159 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----~-~  159 (457)
                      ..|+++|++++|++..   ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++..    . .
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            4689999999997621   249999999999999999999999999999999999999999999999987642    1 1


Q ss_pred             hhhhcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELA--MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ....++.|||++|++.  ++ ..|++||+.+.....+...+...+++.++++.++++ . .++++.+|||||||||+|||
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             HHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence            2334678999999973  44 469999998765444555555556777889999994 3 68999999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||+.+|++|||||||+|||+.+++.++++++.+.+ .|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus       164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (289)
T PRK13645        164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS  240 (289)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999877654 48999999999999865 99999999999999999988754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-48  Score=382.47  Aligned_cols=207  Identities=28%  Similarity=0.355  Sum_probs=184.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.     ..++.
T Consensus        10 ~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~   82 (257)
T PRK11247         10 GTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED   82 (257)
T ss_pred             CCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence            367999999999987  78999999999999999999999999999999999999999999999886542     23567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||++|++.+++.+||+||+.+...  .    ....++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus        83 i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll  156 (257)
T PRK11247         83 TRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL  156 (257)
T ss_pred             eEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999998999999987421  1    12345778899999964 689999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~  306 (457)
                      |||||+|||+.+++.+++++..+. +.|+|||++||+++++.. ||++++|++|++++.++.+
T Consensus       157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999999999999987764 458999999999999864 9999999999999988754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-48  Score=397.50  Aligned_cols=213  Identities=23%  Similarity=0.340  Sum_probs=187.2

Q ss_pred             eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhcCcEEE
Q psy10858         94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAGSKVGY  169 (457)
Q Consensus        94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r~~IGy  169 (457)
                      |++++|++  +. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....    ....++.+||
T Consensus         4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~   79 (354)
T TIGR02142         4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY   79 (354)
T ss_pred             EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence            89999987  55 4 999999999999999999999999999999999999999999998774321    1123578999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+|+.+||+||+.+.....  ...+..+++.++++.++|.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE  157 (354)
T TIGR02142        80 VFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE  157 (354)
T ss_pred             EecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            999999999999999998764432  22334556788999999965 789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus       158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  223 (354)
T TIGR02142       158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP  223 (354)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence            99999999999999998776654 8999999999999965 9999999999999999999987654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.2e-48  Score=377.23  Aligned_cols=218  Identities=25%  Similarity=0.333  Sum_probs=182.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++.++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            47899999997433679999999999999999999999999999999999999999999999987654333345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +||++.+++ .||.||+.+...  +........     .+.++++.+  ++.. .++++.+|||||||||+|||||+.+|
T Consensus        81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p  157 (237)
T cd03252          81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP  157 (237)
T ss_pred             EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence            999998875 699999987432  222222111     122334444  3332 57789999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+.+++.+++.++.+. +|+|||++||+++++..||++++|++|+++..|+++++.+.
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  226 (237)
T cd03252         158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE  226 (237)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            9999999999999999999999988775 48999999999999977999999999999999999988765

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.8e-48  Score=373.30  Aligned_cols=218  Identities=28%  Similarity=0.398  Sum_probs=194.5

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++  +.+++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++....  ..++.++|
T Consensus         1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~   76 (237)
T TIGR00968         1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGF   76 (237)
T ss_pred             CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEE
Confidence            578999999987  78999999999999999999999999999999999999999999999998775432  23568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+.+|+++||||
T Consensus        77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE  156 (237)
T TIGR00968        77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE  156 (237)
T ss_pred             EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999987665555555445566788899999854 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+|||+.+++.+++++....++ |+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus       157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  221 (237)
T TIGR00968       157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH  221 (237)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence            99999999999999998876655 8999999999999865 999999999999999999988653

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-48  Score=374.79  Aligned_cols=220  Identities=22%  Similarity=0.332  Sum_probs=190.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~~  160 (457)
                      ++|+++|++++|+.  +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++     |++|+|+++|+++...  ..
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            47999999999987  789999999999999999999999999999999999997     4899999999876431  22


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||++|++.+++ .||+||+.+.....+.. .+...+++.++++.+++.     .+++.+.+||||||||++||
T Consensus        81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la  159 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA  159 (251)
T ss_pred             HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence            234678999999999886 79999998765544443 233445677788888883     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus       160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14251        160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA  236 (251)
T ss_pred             HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999988765 47999999999999865 999999999999999999988654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.3e-48  Score=414.57  Aligned_cols=220  Identities=21%  Similarity=0.306  Sum_probs=194.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~  166 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...... ..++.
T Consensus         3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   80 (501)
T PRK10762          3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG   80 (501)
T ss_pred             ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            57999999999987  7899999999999999999999999999999999999999999999999887532222 23467


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhc---C-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIY---G-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +||+||++.+++.+||+||+.+....+   + .+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus        81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  160 (501)
T PRK10762         81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES  160 (501)
T ss_pred             EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998754322   2 334445567888999999965 68999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus       161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence            9999999999999999999999988877779999999999999965 9999999999999999988764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-48  Score=374.26  Aligned_cols=221  Identities=23%  Similarity=0.329  Sum_probs=189.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~~--~~  160 (457)
                      .+++++|++++|++  +.+++|+||+|++||+++|+|+||||||||+|+|+|+++|+     +|+|+++|.++...  ..
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          3 LLLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            37899999999987  78999999999999999999999999999999999999874     89999999876431  22


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++.+|+.||+.+.....+. ..+...+++.++++.+++.     ..++++.+||||||||++||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence            23467899999999999999999999875443333 2333445566666666542     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+. +++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14272        161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN  237 (252)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999988775 47999999999999875 999999999999999999998764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-47  Score=373.93  Aligned_cols=227  Identities=23%  Similarity=0.315  Sum_probs=193.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~~--~~  160 (457)
                      ++++++|++++|++  +.+++|+||+|++||++||+||||||||||+++|+|+++|+     +|+|+++|.++...  ..
T Consensus         3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            57999999999987  78999999999999999999999999999999999999997     69999999876431  12


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH-HHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~-~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++. |++||+.+....++... +...+++.++++.+++.     ..++.+.+|||||||||+||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  159 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA  159 (251)
T ss_pred             HHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence            2346789999999998875 99999987655444432 23445566677777763     25789999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|++|||||||+|||+.++..++++++.+. +++|||++||+++++.. ||++++|++|+++..|+++++.....
T Consensus       160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~  238 (251)
T PRK14249        160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR  238 (251)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCC
Confidence            99999999999999999999999999999988774 58999999999999865 89999999999999999999876544


Q ss_pred             cccHH
Q psy10858        314 MPKLS  318 (457)
Q Consensus       314 ~~~l~  318 (457)
                      ...+.
T Consensus       239 ~~~~~  243 (251)
T PRK14249        239 DKRTE  243 (251)
T ss_pred             ChHHH
Confidence            33333

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=4.3e-48  Score=368.34  Aligned_cols=206  Identities=27%  Similarity=0.337  Sum_probs=178.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC----chhhhcC
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGS  165 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~----~~~~~r~  165 (457)
                      +.+ +|+|+|++  +.+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...    .....++
T Consensus         2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   75 (214)
T cd03297           2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR   75 (214)
T ss_pred             cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence            344 99999998  655  99999999 99999999999999999999999999999999999876421    1123456


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      .+||+||++.+++.+|+.||+.+....+  ......+++.++++.+++.. .++++.+||||||||++||+||+.+|++|
T Consensus        76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  153 (214)
T cd03297          76 KIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL  153 (214)
T ss_pred             cEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            8999999999999999999998764322  23334556788899999964 68899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||||||+|||+.+++.++++++.++++ |+|||++||+++++.. ||++++|++|++++.|
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999998777654 8999999999999864 9999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.6e-48  Score=459.25  Aligned_cols=226  Identities=27%  Similarity=0.421  Sum_probs=206.5

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ...|+++||+|+|+++++.||+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. .....++.
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence            45899999999996323789999999999999999999999999999999999999999999999998753 23345678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +|||||++.+++.+||+||+.+++++++.+.++.+++++++++.++|.. .++++++|||||||||+||+||+++|++||
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999988888776667778899999999965 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM  314 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~  314 (457)
                      |||||+||||.+++.+|++++..+ +|+|||++||++++++. ||||++|++|++++.|++++++++++.
T Consensus      1085 LDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~ 1153 (2272)
T TIGR01257      1085 LDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGT 1153 (2272)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCC
Confidence            999999999999999999988774 59999999999999975 999999999999999999999987763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=3.1e-48  Score=366.13  Aligned_cols=201  Identities=28%  Similarity=0.422  Sum_probs=178.1

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhcCcE
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAGSKV  167 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r~~I  167 (457)
                      ++|+++.|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ....++.+
T Consensus         1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   78 (206)
T TIGR03608         1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL   78 (206)
T ss_pred             CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence            4789999987  78999999999999999999999999999999999999999999999998754211    12345789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||++|++.+++.+|++||+.+.....+.......+++.++++.+++.. .++++.+||||||||++||+||+.+|++|||
T Consensus        79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll  158 (206)
T TIGR03608        79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA  158 (206)
T ss_pred             eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999998665555555556677888999999954 6899999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      ||||+|||+.+++.++++++.+.++|.|||++||+++.+..||++++|
T Consensus       159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence            999999999999999999887766799999999999987779999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=373.13  Aligned_cols=220  Identities=25%  Similarity=0.371  Sum_probs=190.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--~~  160 (457)
                      ++|+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...  ..
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            47999999999987  7899999999999999999999999999999999999974     899999999876431  12


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.++|+||++.+++ +|++||+.+.....+.. .....+.+.++++.+++..     .++.+.+||||||||++||
T Consensus        80 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la  158 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA  158 (250)
T ss_pred             HHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence            234578999999999887 89999998765544432 3334556677888888732     5789999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +||+.+|++|||||||+|||+.+++.+++++..+.+ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus       159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14262        159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER  235 (250)
T ss_pred             HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            999999999999999999999999999999877654 7999999999999864 999999999999999999988754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-48  Score=413.23  Aligned_cols=220  Identities=27%  Similarity=0.342  Sum_probs=195.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchh-hhc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHK-TAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~-~~r  164 (457)
                      ++|+++|++++|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+++|  ++|+|+++|.++...... ..+
T Consensus         4 ~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (506)
T PRK13549          4 YLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER   81 (506)
T ss_pred             ceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence            58999999999987  7899999999999999999999999999999999999996  899999999887543322 235


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhc--C-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIY--G-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~--g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      +.+||+||++.+++.+||+||+.+....+  + .+.+...+++.++++.+++.. .++++.+|||||||||+||+||+.+
T Consensus        82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~  161 (506)
T PRK13549         82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ  161 (506)
T ss_pred             CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence            67999999999999999999998865432  2 234455567888999999964 7899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      |++|||||||+|||+.++..+++++..++++|+|||++||+++++.. |||+++|++|+++..|+++++.
T Consensus       162 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        162 ARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence            99999999999999999999999988777779999999999999965 9999999999999999988764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-47  Score=377.19  Aligned_cols=222  Identities=23%  Similarity=0.324  Sum_probs=192.6

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--  158 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--  158 (457)
                      ...+|+++|++++|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++...  
T Consensus        17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            4468999999999987  889999999999999999999999999999999999986     5899999999887431  


Q ss_pred             chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHH
Q psy10858        159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLS  232 (457)
Q Consensus       159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRls  232 (457)
                      .....++.+||+||++.+++ .||+||+.+.....+. ......+++.++++.+++.     ..++++.+||||||||++
T Consensus        95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~  173 (267)
T PRK14237         95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC  173 (267)
T ss_pred             ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence            12234678999999998887 5999999886544443 3344556677888888873     257899999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+.+|++|||||||+|||+.++..++++++.+. ++.|||++||+++++. .|||+++|++|++++.|+++++...
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  252 (267)
T PRK14237        174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN  252 (267)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999988775 4799999999999985 5999999999999999999998654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-47  Score=373.17  Aligned_cols=219  Identities=23%  Similarity=0.327  Sum_probs=189.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC-Cchhh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS-IYHKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~-~~~~~  162 (457)
                      +++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++.. .....
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   80 (249)
T PRK14253          3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD   80 (249)
T ss_pred             eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence            6899999999987  7899999999999999999999999999999999999986     59999999987642 22234


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHHH
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      .++.+||+||++.+++ .||.||+.+.....+.. .....+++.++++.+++.     ..++++.+|||||||||+||||
T Consensus        81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  159 (249)
T PRK14253         81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART  159 (249)
T ss_pred             HHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence            4678999999999887 89999998765444432 333445667777777763     2578899999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus       160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  234 (249)
T PRK14253        160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN  234 (249)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence            9999999999999999999999999999888755 6999999999999875 999999999999999999887654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-48  Score=412.76  Aligned_cols=221  Identities=21%  Similarity=0.262  Sum_probs=195.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~~  166 (457)
                      ++|+++|++++|++  +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...... ..++.
T Consensus         4 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   81 (510)
T PRK09700          4 PYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG   81 (510)
T ss_pred             ceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence            58999999999987  7899999999999999999999999999999999999999999999999887543322 23457


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhh----hcCC---CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGM----IYGM---DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~----l~g~---~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      +||+||++.+++.+||+||+.+...    .++.   +..+..+++.++++.+++.. .++++.+|||||||||+||+||+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~  161 (510)
T PRK09700         82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM  161 (510)
T ss_pred             eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence            9999999999999999999986432    1232   23445567888999999964 78999999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      .+|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (510)
T PRK09700        162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN  234 (510)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence            9999999999999999999999999988877779999999999999975 99999999999999999988653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-47  Score=377.88  Aligned_cols=221  Identities=23%  Similarity=0.318  Sum_probs=191.7

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~  159 (457)
                      ..+|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|+++|.++...  .
T Consensus        23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~  100 (272)
T PRK14236         23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD  100 (272)
T ss_pred             CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence            458999999999987  789999999999999999999999999999999999987     4899999999887531  2


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++.++|+||++.+|+. |++||+.+.....+.. .....+++.++++.+++.     ..++.+.+|||||||||+|
T Consensus       101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l  179 (272)
T PRK14236        101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI  179 (272)
T ss_pred             HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence            22346789999999999886 9999998765555542 233445677788888874     2578899999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|++|||||||+|||+.+++.++++++.+.+ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  257 (272)
T PRK14236        180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS  257 (272)
T ss_pred             HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence            9999999999999999999999999999999887765 7899999999999865 999999999999999999988654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-47  Score=372.76  Aligned_cols=231  Identities=23%  Similarity=0.329  Sum_probs=194.6

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~~--~  159 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+.+  |   ++|+|.++|+++...  .
T Consensus         4 ~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   81 (253)
T PRK14261          4 EIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD   81 (253)
T ss_pred             cceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence            368999999999987  789999999999999999999999999999999999976  3   489999999887542  2


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++.+||+||++.+|+. ||+||+.+....++. ......+.+.++++.+++.     ..++.+.+||||||||++|
T Consensus        82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  160 (253)
T PRK14261         82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI  160 (253)
T ss_pred             hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence            23446789999999998875 999999987655543 2233455677778888773     2578999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. ||++++|++|++++.|+++++....
T Consensus       161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  239 (253)
T PRK14261        161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP  239 (253)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCC
Confidence            9999999999999999999999999999999887755 6899999999999964 9999999999999999999887542


Q ss_pred             CcccHHHHHH
Q psy10858        313 SMPKLSDVFY  322 (457)
Q Consensus       313 ~~~~l~~~f~  322 (457)
                       ...+.+.|.
T Consensus       240 -~~~~~~~~~  248 (253)
T PRK14261        240 -HEELTENYI  248 (253)
T ss_pred             -CcHHHHHHh
Confidence             223444444

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-47  Score=380.60  Aligned_cols=229  Identities=23%  Similarity=0.330  Sum_probs=195.1

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--  158 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--  158 (457)
                      ..++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|.++...  
T Consensus        36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~  113 (285)
T PRK14254         36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV  113 (285)
T ss_pred             CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            4578999999999987  789999999999999999999999999999999999987     6899999999876421  


Q ss_pred             chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      .....++++||+||++.+++. ||.||+.+.....+.+. ...+++.++++.+++.     ..++++.+|||||||||+|
T Consensus       114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L  191 (285)
T PRK14254        114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI  191 (285)
T ss_pred             chHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence            223346789999999988875 99999987665555443 3456678888888874     2578899999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEE-EEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVA-FLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~-im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|+||||||||+|||+.+++.++++++.+++ +.|||++||+++++.. |||++ +|++|+++..|+++++...
T Consensus       192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~  270 (285)
T PRK14254        192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN  270 (285)
T ss_pred             HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999888765 4899999999999875 99975 6799999999999888765


Q ss_pred             CCcccHHH
Q psy10858        312 YSMPKLSD  319 (457)
Q Consensus       312 ~~~~~l~~  319 (457)
                      .....+.+
T Consensus       271 ~~~~~~~~  278 (285)
T PRK14254        271 PESQRVED  278 (285)
T ss_pred             cCCHHHHH
Confidence            43333444

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=5.5e-48  Score=371.60  Aligned_cols=218  Identities=22%  Similarity=0.306  Sum_probs=183.5

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++.++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            47899999998632379999999999999999999999999999999999999999999999987654333345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +||++.+++ .||+||+.++....  ......+     .+.++++.+  ++.. .++++.+||||||||++||+||+.+|
T Consensus        81 ~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  157 (234)
T cd03251          81 VSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP  157 (234)
T ss_pred             eCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999998886 69999998754321  2222211     133444444  4433 57789999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+.+++.+++.++.+. +|.|||++||+++++..||++++|++|+++..|+++++...
T Consensus       158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  226 (234)
T cd03251         158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ  226 (234)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence            9999999999999999999999988775 48999999999999977999999999999999999888655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-47  Score=365.64  Aligned_cols=209  Identities=24%  Similarity=0.345  Sum_probs=180.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|+.    +++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....  ..++.+||
T Consensus         1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~   74 (213)
T TIGR01277         1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM   74 (213)
T ss_pred             CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence            468999999974    367999999999999999999999999999999999999999999998765322  24577999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      +||++.+++.+|+.||+.+.............+++.++++.+++.. .++.+.+||||||||++|||||+.+|++|||||
T Consensus        75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  154 (213)
T TIGR01277        75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE  154 (213)
T ss_pred             EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999986433211112233456778899999954 689999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs  304 (457)
                      ||+|||+.+++.++++++.+.+ .|+|||++||+++++.. ||++++|++|++++.|.
T Consensus       155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            9999999999999999887665 48999999999999864 99999999999998874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-48  Score=381.11  Aligned_cols=220  Identities=22%  Similarity=0.246  Sum_probs=190.3

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ceEEEEcCccCCCCch
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--------QGEIWVLGGHPASIYH  160 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~--------sG~I~i~G~~~~~~~~  160 (457)
                      ||+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+        +|+|.++|.++.....
T Consensus         1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            5899999999987  78999999999999999999999999999999999999998        9999999988754333


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ...++.++|+||++.+++.+||+||+.+.....    +....+..+++.++++.+++.. .++++.+|||||||||+||+
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar  158 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR  158 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence            344567999999987666799999998753211    1111233456778899999964 68999999999999999999


Q ss_pred             Hhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecC
Q psy10858        236 AIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       236 ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs  304 (457)
                      ||+         .+|++|||||||+|||+.+++.++++++.+.++ |+|||++||+++++. .||++++|++|++++.|+
T Consensus       159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~  238 (272)
T PRK13547        159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA  238 (272)
T ss_pred             HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence            999         499999999999999999999999998777655 899999999999996 599999999999999999


Q ss_pred             hhhhhh
Q psy10858        305 PDGFKS  310 (457)
Q Consensus       305 ~~~l~~  310 (457)
                      ++++.+
T Consensus       239 ~~~~~~  244 (272)
T PRK13547        239 PADVLT  244 (272)
T ss_pred             HHHHcC
Confidence            988754

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-47  Score=380.20  Aligned_cols=223  Identities=20%  Similarity=0.294  Sum_probs=191.5

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--  158 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--  158 (457)
                      ..++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|.++...  
T Consensus        36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~  113 (286)
T PRK14275         36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT  113 (286)
T ss_pred             CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence            4578999999999987  789999999999999999999999999999999999864     4999999999876431  


Q ss_pred             chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHH
Q psy10858        159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLS  232 (457)
Q Consensus       159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRls  232 (457)
                      .....++++||+||++.+++. ||.||+.+....++.. .....+++.++++.+++.     ..++++.+|||||||||+
T Consensus       114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  192 (286)
T PRK14275        114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC  192 (286)
T ss_pred             chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence            112346789999999998875 9999999865544443 233445667778888762     257889999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus       193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~  271 (286)
T PRK14275        193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN  271 (286)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999999887754 6899999999999865 999999999999999999998765


Q ss_pred             C
Q psy10858        312 Y  312 (457)
Q Consensus       312 ~  312 (457)
                      .
T Consensus       272 ~  272 (286)
T PRK14275        272 P  272 (286)
T ss_pred             C
Confidence            3

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=7.9e-48  Score=372.90  Aligned_cols=204  Identities=27%  Similarity=0.503  Sum_probs=178.2

Q ss_pred             EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEc-CCCC
Q psy10858         97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP-QELA  175 (457)
Q Consensus        97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp-Q~~~  175 (457)
                      ++|+.  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ...++.+||++ |.+.
T Consensus        29 ~~~~~--~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~~~~~~~~  105 (236)
T cd03267          29 RKYRE--VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLRRIGVVFGQKTQ  105 (236)
T ss_pred             cccCC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcccEEEEcCCccc
Confidence            44555  78999999999999999999999999999999999999999999999998654322 23457899998 5677


Q ss_pred             CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCC
Q psy10858        176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD  254 (457)
Q Consensus       176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLD  254 (457)
                      +++.+|++||+.+...+++....+..+++..+++.+++.. .++++.+||||||||++||+||+++|++|||||||+|||
T Consensus       106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  185 (236)
T cd03267         106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD  185 (236)
T ss_pred             cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            8889999999988766666666666667788899999954 688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        255 PLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       255 p~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      +.+++.+++++..+++ .|.|||++||+++++.. ||++++|++|++++.|
T Consensus       186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999877655 48999999999999865 9999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=2.5e-47  Score=371.83  Aligned_cols=222  Identities=19%  Similarity=0.249  Sum_probs=188.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc-----CCCCchh-
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASIYHK-  161 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~-----~~~~~~~-  161 (457)
                      ++|+++|++++|++  ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+     +...... 
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (253)
T TIGR02323         2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE   79 (253)
T ss_pred             ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence            47999999999987  789999999999999999999999999999999999999999999999876     4332221 


Q ss_pred             ---hhcCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHH
Q psy10858        162 ---TAGSKVGYMPQELA--MFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       162 ---~~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsL  233 (457)
                         ..++.+||++|++.  ++..+|+.+|+.+.....+ .........+.++++.+++.  ..++.+.+|||||||||+|
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l  159 (253)
T TIGR02323        80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI  159 (253)
T ss_pred             HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence               12457999999974  4566789999865332221 12223446678889999995  3688999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|++|||||||+|||+.+++.++++++...+ .|.|||+|||+++++.. ||++++|++|+++..|+++++...
T Consensus       160 aral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~  239 (253)
T TIGR02323       160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD  239 (253)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence            9999999999999999999999999999999877654 48999999999999975 999999999999999999988754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-47  Score=377.55  Aligned_cols=223  Identities=20%  Similarity=0.272  Sum_probs=192.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCc-h
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIY-H  160 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~-~  160 (457)
                      +++|+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|+++|.++.... .
T Consensus        19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~   96 (276)
T PRK14271         19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV   96 (276)
T ss_pred             CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence            468999999999987  8899999999999999999999999999999999999985     7999999998775421 2


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.++|+||++.+|+ +|++||+.+.....+ .+..+...++.++++.+++..     +++.+.+|||||||||+||
T Consensus        97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA  175 (276)
T PRK14271         97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA  175 (276)
T ss_pred             HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence            234678999999999887 899999987543332 344445556677788888842     4678999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+.+|++|||||||+|||+.+++.+++.++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++.+...
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~  254 (276)
T PRK14271        176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPK  254 (276)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence            999999999999999999999999999999887765 5899999999999865 99999999999999999999876543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-47  Score=418.14  Aligned_cols=232  Identities=19%  Similarity=0.208  Sum_probs=200.1

Q ss_pred             cCceEEEeeEEEeCCC---------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC
Q psy10858         87 EEADEGKNTEKEELKP---------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS  157 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~---------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~  157 (457)
                      .++|+++||++.|+..         ...+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence            4689999999999621         1469999999999999999999999999999999999999999999999988754


Q ss_pred             Cch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHH
Q psy10858        158 IYH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKR  229 (457)
Q Consensus       158 ~~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQ  229 (457)
                      ...   ...+++|||+||++  .+++.+||.+|+.+....++. ...+..+++.++++.++|. . .++++++|||||||
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence            321   12456899999997  588999999999876555453 3445567788899999995 3 78999999999999


Q ss_pred             HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858        230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~  307 (457)
                      ||+|||||+.+|++|||||||+|||+.++..++++++.++++ |.|||++|||++++.. ||||++|++|+|++.|++++
T Consensus       471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~  550 (623)
T PRK10261        471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA  550 (623)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            999999999999999999999999999999999998777654 9999999999999975 99999999999999999999


Q ss_pred             hhhcCCcccHH
Q psy10858        308 FKSKYSMPKLS  318 (457)
Q Consensus       308 l~~~~~~~~l~  318 (457)
                      ++.....+...
T Consensus       551 i~~~p~~~~~~  561 (623)
T PRK10261        551 VFENPQHPYTR  561 (623)
T ss_pred             HhcCCCCHHHH
Confidence            87654433333

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=8.1e-48  Score=370.04  Aligned_cols=213  Identities=23%  Similarity=0.312  Sum_probs=183.5

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.
T Consensus         5 ~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (225)
T PRK10247          5 SPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ   82 (225)
T ss_pred             CceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence            468999999999987  789999999999999999999999999999999999999999999999987754433345678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||+||++.+++ .|++||+.+....++...  ..+++.++++.+++. . .++++.+|||||||||+|||||+.+|++|
T Consensus        83 i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  159 (225)
T PRK10247         83 VSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL  159 (225)
T ss_pred             cEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999887 499999987554443221  234567889999995 3 68999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEe-CCeEEEecC
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLY-KGRIIAQDS  304 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~-~GkI~~~gs  304 (457)
                      ||||||+|||+.+++.++++++.+.+ .|.|||++||+++++..||++++|+ ++..+++|+
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence            99999999999999999999877654 4899999999999997799999995 555555554

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-47  Score=376.70  Aligned_cols=222  Identities=21%  Similarity=0.289  Sum_probs=189.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC--Cc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS--IY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~--~~  159 (457)
                      .++++++|++++|++  ..+|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++..  ..
T Consensus        22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   99 (271)
T PRK14238         22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS   99 (271)
T ss_pred             ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence            468999999999987  789999999999999999999999999999999999997     699999999987642  12


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCC----C-CCCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKL----P-NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L----~-~~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++.+||+||++.+++ .|+.||+.+.....+.. .....+.+.++++.+++    . ..++++.+|||||||||+|
T Consensus       100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l  178 (271)
T PRK14238        100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI  178 (271)
T ss_pred             HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence            2334678999999999887 49999998765444433 22334445666666643    2 2578899999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||+.+|++|||||||+|||+.++..++++++.+.+ ++|||++||+++++.. |||+++|++|+++..|+++++.+..
T Consensus       179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~  257 (271)
T PRK14238        179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP  257 (271)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence            9999999999999999999999999999999887755 7999999999999865 9999999999999999999887653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-47  Score=370.11  Aligned_cols=221  Identities=20%  Similarity=0.274  Sum_probs=188.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCccCCCC--ch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--I---SQGEIWVLGGHPASI--YH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p---~sG~I~i~G~~~~~~--~~  160 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+  |   ++|+|+++|.++...  ..
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          4 KIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             ceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            57999999999987  789999999999999999999999999999999999975  4   599999999877421  22


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+++ .|+++|+.+.....+.. .+...+++.+.++.+++.     ..++.+.+|||||||||+||
T Consensus        82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la  160 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA  160 (252)
T ss_pred             HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence            234578999999999887 69999998765544432 222344556667777652     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+.+ +.|||++||+++++.. ||||++|++|+++..|++.++....
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  238 (252)
T PRK14255        161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP  238 (252)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence            999999999999999999999999999999877755 5899999999999865 9999999999999999999887653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-47  Score=381.00  Aligned_cols=237  Identities=24%  Similarity=0.332  Sum_probs=207.6

Q ss_pred             ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C----CceEEEEcCccCCCCchh
Q psy10858         89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-I----SQGEIWVLGGHPASIYHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p----~sG~I~i~G~~~~~~~~~  161 (457)
                      .++++||+.+|...  ...||+||||+|++||++||+|.||||||||.+.|+|+++ |    .+|+|.++|+++...+.+
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            47899999999653  2579999999999999999999999999999999999997 3    679999999987665433


Q ss_pred             ----hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC-C-CHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHH
Q psy10858        162 ----TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG-M-DESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKR  229 (457)
Q Consensus       162 ----~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g-~-~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQ  229 (457)
                          .+++.|+|+||++  +|.|-+||.+.+.-..+.++ . .+++..+++.++++.++++.    ++.+|.+|||||||
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                3467899999998  68899999998877666543 4 46677888999999999974    48999999999999


Q ss_pred             HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhh
Q psy10858        230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~  307 (457)
                      ||.||.||+.+|++||.||||++||...+.+|+++++.+++ .|.|+|++|||+..+. .||||+||.+|+|++.|+.++
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~  240 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE  240 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence            99999999999999999999999999999999999877765 6999999999999885 599999999999999999999


Q ss_pred             hhhcCCcccHHHHHHhhh
Q psy10858        308 FKSKYSMPKLSDVFYKIT  325 (457)
Q Consensus       308 l~~~~~~~~l~~~f~~~~  325 (457)
                      ++....+++...+.....
T Consensus       241 i~~~P~HPYT~~Ll~s~P  258 (316)
T COG0444         241 IFKNPKHPYTRGLLNSLP  258 (316)
T ss_pred             HhcCCCChHHHHHHHhCc
Confidence            999888777766665443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.4e-47  Score=409.55  Aligned_cols=217  Identities=19%  Similarity=0.307  Sum_probs=193.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~  166 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....... .++.
T Consensus        10 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439         10 PLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             ceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            57999999999987  78999999999999999999999999999999999999999999999998875433222 2357


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+||++.+++.+||+||+.+....    .....+++.++++.+++.. .++++.+|||||||||+||+||+++|++||
T Consensus        88 i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll  163 (510)
T PRK15439         88 IYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI  163 (510)
T ss_pred             EEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999875321    1234566788899999964 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus       164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence            999999999999999999988877779999999999999965 99999999999999999988754

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-47  Score=372.61  Aligned_cols=220  Identities=20%  Similarity=0.299  Sum_probs=189.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~~  160 (457)
                      .+|+++|++++|++  ..+++|+||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|.++|+++..  ...
T Consensus         6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            47999999999987  7899999999999999999999999999999999999985     58999999987642  122


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.+||+||++.+|+ +|++||+.+.....+ .++....+++.++++.+++.     ..++.+.+|||||||||+||
T Consensus        84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  162 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA  162 (259)
T ss_pred             HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence            234568999999999887 899999987654433 23344455677788888772     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe-----CCeEEEecChhhh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY-----KGRIIAQDSPDGF  308 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~-----~GkI~~~gs~~~l  308 (457)
                      |||+.+|++|||||||+|||+.++..++++++.+++ ++|||++||+++++.. |||+++|+     +|++++.|+++++
T Consensus       163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~  241 (259)
T PRK14260        163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI  241 (259)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence            999999999999999999999999999999887754 6999999999999965 99999998     5999999999998


Q ss_pred             hhc
Q psy10858        309 KSK  311 (457)
Q Consensus       309 ~~~  311 (457)
                      .+.
T Consensus       242 ~~~  244 (259)
T PRK14260        242 FSN  244 (259)
T ss_pred             hcC
Confidence            654

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=3.8e-47  Score=371.62  Aligned_cols=217  Identities=22%  Similarity=0.299  Sum_probs=188.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCccCCCCchhhh
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI----SQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p----~sG~I~i~G~~~~~~~~~~~  163 (457)
                      .+|+++|++++| +  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|    ++|+|+++|+++...  ...
T Consensus         3 ~~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~   77 (254)
T PRK10418          3 QQIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR   77 (254)
T ss_pred             cEEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence            378999999999 4  6799999999999999999999999999999999999999    999999999877521  222


Q ss_pred             cCcEEEEcCCCC--CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHHHHHHHHHh
Q psy10858        164 GSKVGYMPQELA--MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       164 r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++.+||+||++.  +.+.+|+.+++.+.+...+....  .+++.++++.+++..    .++.+.+|||||||||+|||||
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral  155 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL  155 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence            457999999984  44567999998765544444332  356778899999864    5889999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +.+|++|||||||+|||+.+++.++++++.+.+ .|.|||++||+++++. .|||+++|++|+++..|+++++.+.
T Consensus       156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  231 (254)
T PRK10418        156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA  231 (254)
T ss_pred             hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            999999999999999999999999999877654 4899999999999986 5999999999999999999998764

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-47  Score=372.37  Aligned_cols=222  Identities=18%  Similarity=0.287  Sum_probs=191.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCccCCC--Cch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-----QGEIWVLGGHPAS--IYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-----sG~I~i~G~~~~~--~~~  160 (457)
                      .+|+++|++++|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|+++..  ...
T Consensus         6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            47999999999987  68999999999999999999999999999999999999985     8999999987632  122


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ...++.++|+||++.+++ +|+.||+.+.....+. +..+..+++.++++.+++.     ..++.+.+||||||||++||
T Consensus        84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  162 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA  162 (261)
T ss_pred             HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence            334678999999999887 8999999876544443 3334455677888888873     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeC-----CeEEEecChhh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYK-----GRIIAQDSPDG  307 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~-----GkI~~~gs~~~  307 (457)
                      |||+.+|++|||||||+|||+.+++.++++++.+++ .|+|||++||+++++.. ||||++|++     |+++..|++++
T Consensus       163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~  242 (261)
T PRK14258        163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK  242 (261)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence            999999999999999999999999999999877654 58999999999999965 999999999     99999999999


Q ss_pred             hhhcC
Q psy10858        308 FKSKY  312 (457)
Q Consensus       308 l~~~~  312 (457)
                      +.+..
T Consensus       243 ~~~~~  247 (261)
T PRK14258        243 IFNSP  247 (261)
T ss_pred             HHhCC
Confidence            87643

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-47  Score=370.49  Aligned_cols=219  Identities=26%  Similarity=0.358  Sum_probs=188.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCCc--hh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASIY--HK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~~--~~  161 (457)
                      --+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+     |++|+|+++|+++....  ..
T Consensus         5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            3578999999987  789999999999999999999999999999999999986     47999999998764321  12


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHH
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA  234 (457)
                      ..++.+||+||++.+++. |+.||+.+....++.  ......+.+.++++.+++..     .++.+.+|||||||||+||
T Consensus        83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  161 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA  161 (251)
T ss_pred             HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence            346789999999998875 999999876444433  22334456778889999842     4678999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+.+|++|||||||+|||+.+++.+++.+..+. +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus       162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (251)
T PRK14244        162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN  238 (251)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999988775 48999999999999865 999999999999999999988754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-47  Score=373.72  Aligned_cols=221  Identities=21%  Similarity=0.309  Sum_probs=188.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCC--Cch
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPAS--IYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~--~~~  160 (457)
                      ++|+++|++++|++  ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++     |++|+|+++|+++..  ...
T Consensus         9 ~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243          9 TVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             eEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            58999999999987  789999999999999999999999999999999999986     489999999987642  122


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ...++++||++|++.+++ .|+.||+.+.....+... ...+++.++++.+++.     ..++.+.+||||||||++|||
T Consensus        87 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar  164 (264)
T PRK14243         87 VEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR  164 (264)
T ss_pred             HHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence            334678999999998887 499999987654433322 2334556667776662     257889999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe---------CCeEEEecCh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY---------KGRIIAQDSP  305 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~---------~GkI~~~gs~  305 (457)
                      ||+.+|++|||||||+|||+.+++.+++++..+.+ ++|||++||+++++.. |||+++|+         +|++++.|++
T Consensus       165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~  243 (264)
T PRK14243        165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRT  243 (264)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence            99999999999999999999999999999887755 5899999999999865 99999998         8999999999


Q ss_pred             hhhhhcCC
Q psy10858        306 DGFKSKYS  313 (457)
Q Consensus       306 ~~l~~~~~  313 (457)
                      +++.+...
T Consensus       244 ~~~~~~~~  251 (264)
T PRK14243        244 EKIFNSPQ  251 (264)
T ss_pred             HHHHhCCC
Confidence            99976543

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-47  Score=371.52  Aligned_cols=223  Identities=22%  Similarity=0.308  Sum_probs=193.1

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC------ccCCCCc
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG------GHPASIY  159 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G------~~~~~~~  159 (457)
                      ..++|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|      .++....
T Consensus         7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~   84 (257)
T PRK14246          7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID   84 (257)
T ss_pred             hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence            3478999999999998  8899999999999999999999999999999999999999997777665      3433222


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++.+||+||++.+++.+|++||+.+.....+. ++++..+++.++++.+++.     ..++.+..||+|||||++|
T Consensus        85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l  164 (257)
T PRK14246         85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI  164 (257)
T ss_pred             HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence            234567899999999999999999999886544333 3445556778888899884     2578899999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||||+.+|++|||||||+|||+.+++.+++++..+.+ +.|||++||+++++. .||++++|++|++++.|+++++.+.
T Consensus       165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~  242 (257)
T PRK14246        165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS  242 (257)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999999877654 699999999999995 5999999999999999999988764

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=3.9e-47  Score=363.50  Aligned_cols=212  Identities=25%  Similarity=0.359  Sum_probs=185.4

Q ss_pred             ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch---hhh
Q psy10858         89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH---KTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~---~~~  163 (457)
                      .++++|+++.|++.  .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.....   ...
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence            37899999999742  1579999999999999999999999999999999999999999999999987753321   124


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      ++.+||+||++.+++.+|+.||+.+....++ ...++..+++.++++.+++.. .++.+.+||+|||||++|||||+.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999998765443 445556667888999999954 68899999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEE
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRII  300 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~  300 (457)
                      ++|||||||+|||+.++..++++++.+++ .|+|||++||+++....||++++|++|+++
T Consensus       161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~~  220 (220)
T TIGR02982       161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL  220 (220)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEEC
Confidence            99999999999999999999999877665 589999999999876679999999999863

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=4.2e-47  Score=364.72  Aligned_cols=212  Identities=26%  Similarity=0.365  Sum_probs=182.2

Q ss_pred             ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhh
Q psy10858         89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      .+.++|++++|.+.  .+.+++|+||+|++||+++|+||||||||||+|+|+|+++   |++|+|+++|.++..   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~   79 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQF   79 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHh
Confidence            57799999999763  2689999999999999999999999999999999999999   999999999987642   245


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC---CCHHHHHHHHHH-HHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYG---MDESIWLFQMRK-YSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g---~~~~~~~~~~~~-ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ++.+||+||++.+++.+||+||+.+......   ........++.+ +++.+++.. .++.+.+|||||||||+|||||+
T Consensus        80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence            6789999999999999999999988654332   122222233444 788888854 67889999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh-hHHh-ccCeEEEEeCCeEEEec
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI-EEAN-DASEVAFLYKGRIIAQD  303 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~-~ea~-~~dri~im~~GkI~~~g  303 (457)
                      .+|++|||||||+|||+.++..+++++..+.++|.|||++||++ +++. .||++++|++|++++.|
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999887766799999999998 5775 59999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=6.8e-47  Score=373.36  Aligned_cols=223  Identities=24%  Similarity=0.317  Sum_probs=192.8

Q ss_pred             CceEEEeeEEEeCCC-------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch
Q psy10858         88 EADEGKNTEKEELKP-------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~  160 (457)
                      ++|+++|++++|+.+       ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            369999999999731       2679999999999999999999999999999999999999999999999987754322


Q ss_pred             ---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhh-hcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHH
Q psy10858        161 ---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       161 ---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~-l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRls  232 (457)
                         ...++.+||+||++  .+++..|+.+|+.+... ..+........++.++++.+++. . .++.+.+||||||||++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence               23457899999997  46677999999876433 23444445556788899999995 3 68999999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||||+++|++|||||||+|||+.+++.++++++.+.++ |.|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  241 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT  241 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence            999999999999999999999999999999998776654 8999999999999975 99999999999999999998864

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-48  Score=360.03  Aligned_cols=232  Identities=25%  Similarity=0.370  Sum_probs=210.3

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--------
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--------  158 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--------  158 (457)
                      .++++++|+.|+||.  ..+|++||++-.+|+++.|+|.|||||||+|+||.=+..|+.|.|.++|+.+...        
T Consensus         4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~   81 (256)
T COG4598           4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK   81 (256)
T ss_pred             ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence            368999999999999  8999999999999999999999999999999999999999999999999775311        


Q ss_pred             --c---hhhhcCcEEEEcCCCCCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHH
Q psy10858        159 --Y---HKTAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRL  231 (457)
Q Consensus       159 --~---~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRl  231 (457)
                        +   ....|.++|+|||+++||..|||.||+.- .....|.++.+..++++.++..+|+.. .+.+|..||||||||+
T Consensus        82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~  161 (256)
T COG4598          82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV  161 (256)
T ss_pred             eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence              1   12356789999999999999999999864 345678999999999999999999954 7899999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||||+.+|+++++|||||+|||....++++.++.+.++|+|.+++||.|..|+. +++|+++++|.|-++|+|++++.
T Consensus       162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~  241 (256)
T COG4598         162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG  241 (256)
T ss_pred             HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence            99999999999999999999999999999999999999999999999999999987 89999999999999999999998


Q ss_pred             cCCcccHHHH
Q psy10858        311 KYSMPKLSDV  320 (457)
Q Consensus       311 ~~~~~~l~~~  320 (457)
                      .+..+.+.+.
T Consensus       242 nP~S~RlkqF  251 (256)
T COG4598         242 NPQSPRLKQF  251 (256)
T ss_pred             CCCCHHHHHH
Confidence            7665555543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=4.4e-47  Score=365.79  Aligned_cols=204  Identities=24%  Similarity=0.310  Sum_probs=178.3

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCccCCCCchhhhcCcEEEEcCCCC--CCCC
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI----SQGEIWVLGGHPASIYHKTAGSKVGYMPQELA--MFGE  179 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p----~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~--L~~~  179 (457)
                      +++|+||+|++||+++|+||||||||||+|+|+|+++|    ++|+|+++|+++...  ...++.+||++|++.  +++.
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~   78 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL   78 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence            57899999999999999999999999999999999999    899999999877532  222357999999985  5567


Q ss_pred             CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC---C-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858        180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP---N-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP  255 (457)
Q Consensus       180 lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~---~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp  255 (457)
                      +|+.+|+.+.....+.......+++.++++.+++.   . .++.+.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~  158 (230)
T TIGR02770        79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV  158 (230)
T ss_pred             cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence            89999997765544443444556788899999996   2 5889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        256 LVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       256 ~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      .+++.+++++..+.+ .|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999877665 48999999999999965 999999999999999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1e-46  Score=366.96  Aligned_cols=218  Identities=22%  Similarity=0.253  Sum_probs=186.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhhhc-
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTAG-  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~~r-  164 (457)
                      ++|+++|++++|++  +.+|+||||+|++||++||+|+||||||||+++|+|+  ++|++|+|+++|.++........+ 
T Consensus         6 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T CHL00131          6 PILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH   83 (252)
T ss_pred             ceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence            58999999999987  7899999999999999999999999999999999998  579999999999887543322222 


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhc----CC---CHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHHH
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIY----GM---DESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSFT  234 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~----g~---~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsLA  234 (457)
                      ..++|++|++.+++.+|+.+++.+.....    +.   ...+..+++.++++.+++. . .++.+. +|||||||||+||
T Consensus        84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la  163 (252)
T CHL00131         84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL  163 (252)
T ss_pred             eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence            25899999999999999999997653321    11   1223345677888999995 3 578887 5999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~  307 (457)
                      +||+++|++|||||||+|||+.+++.++++++.+.++|.|||++||+++++..  ||++++|++|++++.|+++.
T Consensus       164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence            99999999999999999999999999999988776679999999999999864  89999999999999998873

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=2.3e-47  Score=368.59  Aligned_cols=218  Identities=24%  Similarity=0.321  Sum_probs=180.3

Q ss_pred             eEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         90 DEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ++++|++++|++. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........++.+|
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            4789999999752 256999999999999999999999999999999999999999999999998765433334456799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      |++|++.+++ .||+||+.+.....  ..+.....     +..+++.+  ++.. .++.+.+|||||||||+||+||+.+
T Consensus        81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~  157 (238)
T cd03249          81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN  157 (238)
T ss_pred             EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence            9999998876 69999998753322  11221111     12222333  3322 5678899999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |++|||||||+|||+.+++.+++.++.+. +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus       158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  227 (238)
T cd03249         158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ  227 (238)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence            99999999999999999999999988775 79999999999999988999999999999999998887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.5e-47  Score=365.95  Aligned_cols=217  Identities=24%  Similarity=0.338  Sum_probs=179.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus         3 l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             EEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            7899999999741 469999999999999999999999999999999999999999999999987654333345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +||++.+++. |++||+.++....  ......+     .+..+++.+  ++.. .++.+.+|||||||||+||+||+.+|
T Consensus        82 ~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p  158 (229)
T cd03254          82 VLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP  158 (229)
T ss_pred             ecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            9999988875 9999998753221  1111111     112233333  3322 46778999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+.+++.+++++..+. +|+|||++||+++++..||++++|++|+++..|+.+++.++
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence            9999999999999999999999987764 58999999999999877999999999999999988877654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.2e-47  Score=359.67  Aligned_cols=200  Identities=26%  Similarity=0.295  Sum_probs=177.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +++++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ...+++++
T Consensus         1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~   77 (204)
T PRK13538          1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL   77 (204)
T ss_pred             CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence            5899999999987  78999999999999999999999999999999999999999999999998765322 23456899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |++|++.+++.+|+.||+.++...++.   ...+++.++++.+++.. .++++.+||||||||++||+||+++|++||||
T Consensus        78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  154 (204)
T PRK13538         78 YLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD  154 (204)
T ss_pred             EeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999999999999999887655442   22356778899999954 68899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhcc-CeEEEE
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDA-SEVAFL  294 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~-dri~im  294 (457)
                      |||+|||+.+++.++++++..+++|.|||++||+++++..| +|++++
T Consensus       155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            99999999999999999887767789999999999999775 677666

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-47  Score=415.04  Aligned_cols=225  Identities=19%  Similarity=0.288  Sum_probs=195.4

Q ss_pred             cCceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--------
Q psy10858         87 EEADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--------  156 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--------  156 (457)
                      .++|+++|++++|+..  ...+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|..+.        
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~   89 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE   89 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence            4689999999999632  257999999999999999999999999999999999999999999999886431        


Q ss_pred             --CCch---hhh-cCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC----CCCCCCCC
Q psy10858        157 --SIYH---KTA-GSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN----LERPVKYL  223 (457)
Q Consensus       157 --~~~~---~~~-r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~L  223 (457)
                        ....   ... +++||||+|++  .+++.+||.||+.+..... +.+..+..+++.++++.++|+.    +++++.+|
T Consensus        90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L  169 (623)
T PRK10261         90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL  169 (623)
T ss_pred             cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence              1111   112 35799999998  6888899999999876653 6666667778889999999953    58999999


Q ss_pred             ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858        224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIA  301 (457)
Q Consensus       224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~  301 (457)
                      ||||||||+||+||+.+|+||||||||+|||+.+++.++++++.+.++ |+|||++|||++++.. ||||++|++|++++
T Consensus       170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~  249 (623)
T PRK10261        170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE  249 (623)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence            999999999999999999999999999999999999999998877654 9999999999999865 99999999999999


Q ss_pred             ecChhhhhhc
Q psy10858        302 QDSPDGFKSK  311 (457)
Q Consensus       302 ~gs~~~l~~~  311 (457)
                      .|+++++...
T Consensus       250 ~g~~~~~~~~  259 (623)
T PRK10261        250 TGSVEQIFHA  259 (623)
T ss_pred             cCCHHHhhcC
Confidence            9999988654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=2.4e-47  Score=363.98  Aligned_cols=206  Identities=23%  Similarity=0.395  Sum_probs=172.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++.++.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++........++.++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            78999999997533569999999999999999999999999999999999999999999999987644333334568999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCC-----------CCCCCChhHHHHHHHHHHh
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LER-----------PVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~-----------~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++|++.+++ .|+.||+.+....  ..    ...+.++++.+++.. .++           .+.+|||||||||+|||||
T Consensus        83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al  155 (220)
T cd03245          83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL  155 (220)
T ss_pred             eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence            999998886 6999999764321  11    123445566666632 333           3579999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD  303 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g  303 (457)
                      +.+|++|||||||+|||+.+++.++++++.+.++ +|||++||++++++.||++++|++|++++.|
T Consensus       156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            9999999999999999999999999998877554 8999999999988779999999999997653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=5.1e-47  Score=406.72  Aligned_cols=225  Identities=23%  Similarity=0.286  Sum_probs=194.0

Q ss_pred             cCceEEEeeEEEeCC---------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC
Q psy10858         87 EEADEGKNTEKEELK---------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS  157 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~---------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~  157 (457)
                      .++|+++|++++|++         +.+.+|+||||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~  351 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN  351 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence            458999999999962         12579999999999999999999999999999999999995 89999999987753


Q ss_pred             Cchh---hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC--CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHH
Q psy10858        158 IYHK---TAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQK  228 (457)
Q Consensus       158 ~~~~---~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g--~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqk  228 (457)
                      .+..   ..++++||+||++  .+++.+||.||+.+....++  .+..+..+++.++++.+++. . .++++.+||||||
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence            3211   2356799999997  48888999999987654332  34444556788899999995 3 6899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858        229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       229 QRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~  306 (457)
                      |||+||+||+.+|++|||||||+|||+.+++.++++++.++++ |+|||++|||++++.. |||+++|++|++++.|+++
T Consensus       432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  511 (529)
T PRK15134        432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE  511 (529)
T ss_pred             HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence            9999999999999999999999999999999999998877654 8999999999999965 9999999999999999999


Q ss_pred             hhhhcC
Q psy10858        307 GFKSKY  312 (457)
Q Consensus       307 ~l~~~~  312 (457)
                      ++.+..
T Consensus       512 ~~~~~~  517 (529)
T PRK15134        512 RVFAAP  517 (529)
T ss_pred             HHhcCC
Confidence            987643

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.8e-47  Score=354.06  Aligned_cols=217  Identities=27%  Similarity=0.333  Sum_probs=191.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      |+.++++.++|+.  .+  =..+++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++.....+  ..|-|+
T Consensus         1 ~l~L~~V~~~y~~--~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVS   74 (231)
T COG3840           1 MLALDDVRFSYGH--LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVS   74 (231)
T ss_pred             CccccceEEeeCc--ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChh
Confidence            4678999999987  32  25889999999999999999999999999999999999999999998865433  346799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ++||+.+||..+||.+|+.++..-. ++ ..+.+++++.++.++||.. .++.|.+|||||||||+|||+|+.+-+||+|
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLL  153 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLL  153 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence            9999999999999999998764321 22 2445677888999999965 7999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||+|+|||..|.++..++..+ .+++.|++||||..+++.. +||++++++|+|.+.|+.+++++..
T Consensus       154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~  221 (231)
T COG3840         154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK  221 (231)
T ss_pred             cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence            9999999999999999996555 4669999999999999976 8999999999999999999988754

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=365.20  Aligned_cols=221  Identities=24%  Similarity=0.348  Sum_probs=190.7

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--chh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--YHK  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~~~  161 (457)
                      +++++|+++.|++  +.+++|+||+|++||+++|+|+||||||||+++|+|+.+     |++|+|+++|.++...  ...
T Consensus         3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            5899999999987  789999999999999999999999999999999999864     4899999999876431  223


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHHH
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ..++++||+||++.+|+. |+.||+.+....++. +.+...+++.++++.+++.     ..++.+.+||||||||++|||
T Consensus        81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar  159 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR  159 (250)
T ss_pred             HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence            456789999999998875 999999876544433 2344566778888888873     247889999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||+.+|++|||||||+|||+.+++.++++++.++ ++.|||++||+++++.. ||++++|++|++++.|+++++.....
T Consensus       160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~  237 (250)
T PRK14266        160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPK  237 (250)
T ss_pred             HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCC
Confidence            9999999999999999999999999999988775 48999999999999875 89999999999999999999865533

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=371.70  Aligned_cols=221  Identities=22%  Similarity=0.309  Sum_probs=187.7

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC--Cc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS--IY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~--~~  159 (457)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  ..
T Consensus        18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~   95 (274)
T PRK14265         18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN   95 (274)
T ss_pred             CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence            458999999999987  7899999999999999999999999999999999999863     69999999987642  12


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ....++++||+||++.+++. ||.||+.+.....+... ...+.+.++++.+++.     ..++++.+|||||||||+||
T Consensus        96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  173 (274)
T PRK14265         96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA  173 (274)
T ss_pred             hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence            22346789999999998874 99999987654433322 2234455667777762     25788999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe---------CCeEEEecC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY---------KGRIIAQDS  304 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~---------~GkI~~~gs  304 (457)
                      |||+.+|++|||||||+|||+.+++.+++++..+.+ +.|||++||+++++.. |||+++|+         +|++++.|+
T Consensus       174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~  252 (274)
T PRK14265        174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP  252 (274)
T ss_pred             HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence            999999999999999999999999999999887754 7999999999999965 99999997         899999999


Q ss_pred             hhhhhhcC
Q psy10858        305 PDGFKSKY  312 (457)
Q Consensus       305 ~~~l~~~~  312 (457)
                      ++++....
T Consensus       253 ~~~~~~~~  260 (274)
T PRK14265        253 TEQMFGSP  260 (274)
T ss_pred             HHHHHhCC
Confidence            99987643

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-46  Score=368.10  Aligned_cols=221  Identities=20%  Similarity=0.302  Sum_probs=191.4

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCC--
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASI--  158 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~--  158 (457)
                      ..+.+.+++++++|++  +.+|+|+||+|++||++||+|+||||||||+|+|+|+++|     ++|+|+++|.++...  
T Consensus         5 ~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~   82 (261)
T PRK14263          5 APIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV   82 (261)
T ss_pred             CCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence            3578999999999988  8899999999999999999999999999999999999986     799999999876421  


Q ss_pred             chhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHH
Q psy10858        159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       159 ~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsL  233 (457)
                      .....++.+||+||++.++ .+|+.||+.+.....+.. .+..+++.++++.+++..     .++++.+||||||||++|
T Consensus        83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l  160 (261)
T PRK14263         83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI  160 (261)
T ss_pred             chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence            2223467899999999988 599999998876544432 334556778888888732     357889999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe--------CCeEEEecC
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY--------KGRIIAQDS  304 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~--------~GkI~~~gs  304 (457)
                      ||||+++|++|||||||+|||+.+++.++++++.++ +++|||++||+++++.. |||+++|+        +|++++.|+
T Consensus       161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~  239 (261)
T PRK14263        161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP  239 (261)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCC
Confidence            999999999999999999999999999999988775 47999999999999865 99999995        899999999


Q ss_pred             hhhhhhc
Q psy10858        305 PDGFKSK  311 (457)
Q Consensus       305 ~~~l~~~  311 (457)
                      ++++.+.
T Consensus       240 ~~~~~~~  246 (261)
T PRK14263        240 TAQIFQN  246 (261)
T ss_pred             HHHHHhC
Confidence            9998764

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-46  Score=380.56  Aligned_cols=226  Identities=23%  Similarity=0.357  Sum_probs=192.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~  159 (457)
                      ..+|+++|++++|.+....+|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|.++|.++...  .
T Consensus        78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            35899999999996433679999999999999999999999999999999999986     5799999999987532  2


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHH-HHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHHHH
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESI-WLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~-~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRlsL  233 (457)
                      ....++++||+||++.+|. .|++||+.|.....+...++ ..+.+..+++.+++.     ..++++.+|||||||||+|
T Consensus       158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L  236 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI  236 (329)
T ss_pred             hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence            2345678999999999885 79999998765444444333 334466777777763     2578999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||+.+|+||||||||+|||+.+.+.+++.++.+.+ ++|||++||+++++.. ||||++|++|++++.|+++++.+..
T Consensus       237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~  315 (329)
T PRK14257        237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP  315 (329)
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence            9999999999999999999999999999999887755 6999999999999976 9999999999999999999998754


Q ss_pred             Cc
Q psy10858        313 SM  314 (457)
Q Consensus       313 ~~  314 (457)
                      ..
T Consensus       316 ~~  317 (329)
T PRK14257        316 KN  317 (329)
T ss_pred             Cc
Confidence            43

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.6e-47  Score=401.97  Aligned_cols=218  Identities=23%  Similarity=0.310  Sum_probs=191.3

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchh-hhcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHK-TAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~-~~r~  165 (457)
                      +|+++|++++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|  ++|+|+++|+++...... ..++
T Consensus         1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            4789999999987  7899999999999999999999999999999999999987  799999999887543322 2346


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhc--C--CCHHHHHHHHHHHHhHcCCCC-C-CCCCCCCChhHHHHHHHHHHhhc
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIY--G--MDESIWLFQMRKYSHVLKLPN-L-ERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~--g--~~~~~~~~~~~~ll~~l~L~~-~-~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      .+||+||++.+++.+||.||+.+.....  +  ...+...+++.++++.+++.. . ++++++|||||||||+||+||+.
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~  158 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK  158 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence            7999999999999999999998754332  1  334445567888999999964 3 57799999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      +|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||+|++|++|+++..++++++
T Consensus       159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            999999999999999999999999988877779999999999999975 999999999999999988764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.4e-46  Score=403.38  Aligned_cols=224  Identities=22%  Similarity=0.288  Sum_probs=193.9

Q ss_pred             CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCch
Q psy10858         88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~~  160 (457)
                      ++++++|++++|+++  .+.+|+||||+|++||++||+||||||||||+|+|+|+++|     ++|+|+++|.++.....
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            589999999999731  25799999999999999999999999999999999999986     79999999988754322


Q ss_pred             h---h-hcCcEEEEcCCCC--CCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHHH
Q psy10858        161 K---T-AGSKVGYMPQELA--MFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQKR  229 (457)
Q Consensus       161 ~---~-~r~~IGyvpQ~~~--L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqkQ  229 (457)
                      .   . .++++||+||++.  +++.+|+.+++.+.... .+.+..+..+++.++++.+++..    .++++.+|||||||
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q  163 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ  163 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence            1   1 2357999999975  67778999998765433 25555566778889999999954    48899999999999


Q ss_pred             HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858        230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~  307 (457)
                      ||+|||||+++|++|||||||+|||+.+++.++++++.++++ |+|||+|||+++++.. ||||++|++|++++.|++++
T Consensus       164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~  243 (529)
T PRK15134        164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT  243 (529)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999998777654 8999999999999865 99999999999999999998


Q ss_pred             hhhc
Q psy10858        308 FKSK  311 (457)
Q Consensus       308 l~~~  311 (457)
                      +...
T Consensus       244 ~~~~  247 (529)
T PRK15134        244 LFSA  247 (529)
T ss_pred             HhhC
Confidence            8654

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-46  Score=367.09  Aligned_cols=229  Identities=21%  Similarity=0.301  Sum_probs=192.3

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCC----
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPAS----  157 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~----  157 (457)
                      ..+|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++..    
T Consensus        14 ~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~   91 (265)
T PRK14252         14 QQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE   91 (265)
T ss_pred             CceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence            467999999999987  7899999999999999999999999999999999999875     79999999876531    


Q ss_pred             CchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH-HHHHHHHHHHhHcCCC-----CCCCCCCCCChhHHHHH
Q psy10858        158 IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES-IWLFQMRKYSHVLKLP-----NLERPVKYLSGGQKRRL  231 (457)
Q Consensus       158 ~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~-~~~~~~~~ll~~l~L~-----~~~~~~~~LSGGqkQRl  231 (457)
                      ......++.+||+||++.+++. |++||+.+.....+.... ...+++.++++.+++.     ..++.+.+|||||||||
T Consensus        92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  170 (265)
T PRK14252         92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL  170 (265)
T ss_pred             cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence            1122346789999999999885 999999876544444332 2345566777777762     24788999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||||+.+|++|||||||+|||+.+++.+++.++.+.+ +.|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus       171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  249 (265)
T PRK14252        171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI  249 (265)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999999999999887754 699999999999996 499999999999999999998875


Q ss_pred             cCCcccHHH
Q psy10858        311 KYSMPKLSD  319 (457)
Q Consensus       311 ~~~~~~l~~  319 (457)
                      ....+.+++
T Consensus       250 ~~~~~~~~~  258 (265)
T PRK14252        250 KPKNKQTED  258 (265)
T ss_pred             CCCCHHHHH
Confidence            433334444

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=401.01  Aligned_cols=216  Identities=21%  Similarity=0.306  Sum_probs=190.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~  166 (457)
                      ++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.... ....++.
T Consensus         3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   80 (501)
T PRK11288          3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG   80 (501)
T ss_pred             ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence            58999999999987  78999999999999999999999999999999999999999999999998774322 1234578


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhh--hcC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGM--IYG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~--l~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      |||+||++.+++.+||.||+.+...  .++ .+..+..+++.++++.+++.. .++++.+|||||||||+||+||+.+|+
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~  160 (501)
T PRK11288         81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR  160 (501)
T ss_pred             EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999987532  223 234455667888999999964 688999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~  305 (457)
                      +|||||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|+++..+++
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        161 VIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence            999999999999999999999988777779999999999999965 999999999999887654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.5e-46  Score=402.20  Aligned_cols=223  Identities=23%  Similarity=0.330  Sum_probs=190.3

Q ss_pred             cCceEEEeeEEEeCC---CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-CccC---CCCc
Q psy10858         87 EEADEGKNTEKEELK---PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL-GGHP---ASIY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~---~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~-G~~~---~~~~  159 (457)
                      .++|+++|++++|++   +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+.   ....
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~  356 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG  356 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence            458999999999952   22579999999999999999999999999999999999999999999996 6432   2111


Q ss_pred             ---hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------CCCCCCCCChhHHHH
Q psy10858        160 ---HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------LERPVKYLSGGQKRR  230 (457)
Q Consensus       160 ---~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------~~~~~~~LSGGqkQR  230 (457)
                         ....++++||+||++.+++.+||.||+.+.... +.+.+...+++.++++.+++..      .++++.+||||||||
T Consensus       357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr  435 (520)
T TIGR03269       357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR  435 (520)
T ss_pred             hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence               112346799999999999999999999875332 3344444566788899999953      589999999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |+|||||+.+|++|||||||+|||+.+++.++++++.+++ .|.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus       436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  515 (520)
T TIGR03269       436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI  515 (520)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999877755 48999999999999965 999999999999999998887


Q ss_pred             hh
Q psy10858        309 KS  310 (457)
Q Consensus       309 ~~  310 (457)
                      .+
T Consensus       516 ~~  517 (520)
T TIGR03269       516 VE  517 (520)
T ss_pred             Hh
Confidence            54

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=1.2e-46  Score=367.32  Aligned_cols=212  Identities=23%  Similarity=0.302  Sum_probs=183.4

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM  170 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv  170 (457)
                      +++||++.      .+|+|+||+|++||+++|+|+||||||||+++|+|++++ +|+|+++|+++........++.+||+
T Consensus         2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v   74 (248)
T PRK03695          2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL   74 (248)
T ss_pred             cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence            56777774      269999999999999999999999999999999999964 99999999887544433445679999


Q ss_pred             cCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc-------CCc
Q psy10858        171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH-------KPQ  242 (457)
Q Consensus       171 pQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~-------~P~  242 (457)
                      ||++.+++.+|+++|+.++... +.+.++..+++.++++.+++.. .++++.+||||||||++||+||+.       +|+
T Consensus        75 ~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~  153 (248)
T PRK03695         75 SQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ  153 (248)
T ss_pred             cccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCC
Confidence            9999888889999999876432 2333444567788999999964 689999999999999999999997       679


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||||||+|||+.+++.++++++.+.++|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus       154 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence            999999999999999999999988776679999999999999864 99999999999999999988754

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=371.03  Aligned_cols=228  Identities=22%  Similarity=0.308  Sum_probs=187.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|+++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..   ...++.+
T Consensus         5 ~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i   80 (272)
T PRK15056          5 AGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV   80 (272)
T ss_pred             ceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence            369999999999631 679999999999999999999999999999999999999999999999987632   1223469


Q ss_pred             EEEcCCCCCC--CCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        168 GYMPQELAMF--GELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       168 GyvpQ~~~L~--~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ||+||++.++  ...++.+++.+...    .++.......+++.++++.+++.. .++++.+||||||||++||+||+.+
T Consensus        81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~  160 (272)
T PRK15056         81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ  160 (272)
T ss_pred             EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9999998653  23478888764311    111222334456677889999954 7899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      |++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||+++++ +|+++..|+++++.+.   ..+++
T Consensus       161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~~---~~~~~  236 (272)
T PRK15056        161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFTA---ENLEL  236 (272)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccCH---HHHHH
Confidence            99999999999999999999999988877779999999999999864 9999777 8999999999887532   34555


Q ss_pred             HHHh
Q psy10858        320 VFYK  323 (457)
Q Consensus       320 ~f~~  323 (457)
                      .|..
T Consensus       237 ~~~~  240 (272)
T PRK15056        237 AFSG  240 (272)
T ss_pred             Hhcc
Confidence            5543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.6e-46  Score=397.58  Aligned_cols=236  Identities=23%  Similarity=0.303  Sum_probs=205.1

Q ss_pred             ccCceEEEeeEEEeCC---------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858         86 EEEADEGKNTEKEELK---------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA  156 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~---------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~  156 (457)
                      .+++++++||+|+|..         +...|++||||+|.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+..
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~  356 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD  356 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence            5689999999999983         1257999999999999999999999999999999999999999999999998722


Q ss_pred             C--CchhhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcCC-CHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHH
Q psy10858        157 S--IYHKTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYGM-DESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKR  229 (457)
Q Consensus       157 ~--~~~~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~-~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQ  229 (457)
                      .  ......++++-++||++  +|.|.+||.+++.....+++. ...+.++++.++++.++|+.  ++++|++|||||||
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence            1  11223456788888887  799999999999887776543 34566678999999999964  79999999999999


Q ss_pred             HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858        230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~  307 (457)
                      |++|||||+.+|++||+|||||.||+..+..+.+++..++++ |.|.|++||||..++. ||||++|++|+|++.|+.+.
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~  516 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK  516 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence            999999999999999999999999999999999997766554 9999999999999986 99999999999999999999


Q ss_pred             hhhcCCcccHHHHH
Q psy10858        308 FKSKYSMPKLSDVF  321 (457)
Q Consensus       308 l~~~~~~~~l~~~f  321 (457)
                      +++....++...+.
T Consensus       517 v~~~p~h~Ytr~L~  530 (539)
T COG1123         517 VFENPQHPYTRKLL  530 (539)
T ss_pred             HhcCCCChHHHHHH
Confidence            98876666555444

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=400.43  Aligned_cols=216  Identities=20%  Similarity=0.283  Sum_probs=189.7

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcEEEE
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYM  170 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~IGyv  170 (457)
                      ++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... ...++++||+
T Consensus         1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v   78 (491)
T PRK10982          1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV   78 (491)
T ss_pred             CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence            3689999987  789999999999999999999999999999999999999999999999988753322 2335679999


Q ss_pred             cCCCCCCCCCCHHHHHHHhhh-hcC--CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        171 PQELAMFGELTIKETLNFFGM-IYG--MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       171 pQ~~~L~~~lTV~EnL~~~~~-l~g--~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||++.+++.+||+||+.+... ..+  .+.++..+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||
T Consensus        79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL  158 (491)
T PRK10982         79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM  158 (491)
T ss_pred             ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            999999999999999987532 222  233444567888999999964 6889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ||||+|||+.+++.++++++.+++.|+|||++||+++++.. |||+++|++|++++.|+++++.
T Consensus       159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  222 (491)
T PRK10982        159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT  222 (491)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence            99999999999999999988877779999999999999965 9999999999999999987763

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.7e-46  Score=361.64  Aligned_cols=217  Identities=22%  Similarity=0.321  Sum_probs=180.1

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++........++.+||
T Consensus         1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            4789999999631 569999999999999999999999999999999999999999999999987754443445678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      ++|++.+++ .|+.||+.+....  .+......     .+.+.++.+  ++.. .++++.+|||||||||+||+||+.+|
T Consensus        80 ~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p  156 (236)
T cd03253          80 VPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP  156 (236)
T ss_pred             ECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999999885 6999999875321  12222111     112222333  2322 46678999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+.+++.+++++..+.+ |+|||++||+++++..||++++|++|+++..|+++++...
T Consensus       157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~  225 (236)
T cd03253         157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK  225 (236)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence            99999999999999999999999887766 9999999999999977999999999999999998887653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.5e-46  Score=402.10  Aligned_cols=220  Identities=24%  Similarity=0.353  Sum_probs=190.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcC---------------
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLG---------------  152 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G---------------  152 (457)
                      |+++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|++  +|++|+|+++|               
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~   78 (520)
T TIGR03269         1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV   78 (520)
T ss_pred             CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence            578999999987  78999999999999999999999999999999999997  79999999972               


Q ss_pred             --------ccCC-------CCc---hhhhcCcEEEEcCC-CCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC
Q psy10858        153 --------GHPA-------SIY---HKTAGSKVGYMPQE-LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL  213 (457)
Q Consensus       153 --------~~~~-------~~~---~~~~r~~IGyvpQ~-~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L  213 (457)
                              .++.       ...   ....++.+||+||+ +.+++.+||+||+.+.....+.+.++..+++.++++.+++
T Consensus        79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                    2110       000   11235679999997 6788889999999886655666666666788899999999


Q ss_pred             CC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCe
Q psy10858        214 PN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASE  290 (457)
Q Consensus       214 ~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dr  290 (457)
                      .. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++++.+.+ .|+|||+||||++++.. |||
T Consensus       159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  238 (520)
T TIGR03269       159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK  238 (520)
T ss_pred             hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence            65 6889999999999999999999999999999999999999999999999877644 59999999999999965 999


Q ss_pred             EEEEeCCeEEEecChhhhhhc
Q psy10858        291 VAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       291 i~im~~GkI~~~gs~~~l~~~  311 (457)
                      +++|++|+++..|+++++...
T Consensus       239 i~~l~~G~i~~~g~~~~~~~~  259 (520)
T TIGR03269       239 AIWLENGEIKEEGTPDEVVAV  259 (520)
T ss_pred             EEEEeCCEEeeecCHHHHHHH
Confidence            999999999999998887653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.1e-46  Score=359.69  Aligned_cols=206  Identities=27%  Similarity=0.364  Sum_probs=174.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            78999999997533579999999999999999999999999999999999999999999999987754443445678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-----------C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-----------N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-----------~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      +||++.+++ .|++||+.++..   ...+    ++.++++.+++.           . .++.+.+||||||||++|||||
T Consensus        83 ~~q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral  154 (221)
T cd03244          83 IPQDPVLFS-GTIRSNLDPFGE---YSDE----ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL  154 (221)
T ss_pred             ECCCCcccc-chHHHHhCcCCC---CCHH----HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence            999999876 599999975432   2222    223333333332           1 3568899999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs  304 (457)
                      +++|++|||||||+|||+.+++.++++++.+. ++.|||++||+++++..||++++|++|++++.|+
T Consensus       155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         155 LRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            99999999999999999999999999988764 4689999999999997799999999999998775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=5.1e-46  Score=360.92  Aligned_cols=218  Identities=24%  Similarity=0.286  Sum_probs=183.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhh-hcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKT-AGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~-~r~  165 (457)
                      ||+++|++++|++  +.+++|+||+|++||+++|+|+||||||||+++|+|++  +|++|+|.++|.++...+... .+.
T Consensus         1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (248)
T PRK09580          1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE   78 (248)
T ss_pred             CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence            5899999999987  78999999999999999999999999999999999995  699999999998775433222 235


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhh-h--c-C---CCHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHHHH
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGM-I--Y-G---MDESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSFTI  235 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~-l--~-g---~~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsLA~  235 (457)
                      .++|++|++.+++.+|+.+++.+... +  . .   .......+++.++++.++++ . .++.+. +|||||||||+|||
T Consensus        79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar  158 (248)
T PRK09580         79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  158 (248)
T ss_pred             ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence            79999999998888887776643211 1  1 1   11223355677788888885 3 566675 89999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||+++|++|||||||+|||+.+++.+.++++.++++|+|||++||+++++..  +|++++|++|+++..|+++.+
T Consensus       159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999988777778999999999999875  799999999999999988754

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.3e-46  Score=363.04  Aligned_cols=197  Identities=24%  Similarity=0.323  Sum_probs=172.8

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      |+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....     ...+|+||++.+++.+||.||+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~v~q~~~l~~~~tv~e~l   75 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-----PDRMVVFQNYSLLPWLTVRENI   75 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hhheEEecCcccCCCCCHHHHH
Confidence            57999999999999999999999999999999999999999999998775322     1358999999999999999999


Q ss_pred             HHhhh--hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        187 NFFGM--IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       187 ~~~~~--l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                      .+...  ..+.......+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  155 (230)
T TIGR01184        76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE  155 (230)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence            87532  123444555666788999999964 688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        264 LLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       264 ~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ++..+.+ .|+|||++||+++++.. ||++++|++|++++.|++.++
T Consensus       156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            9777655 48999999999999865 999999999999998876655

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.9e-46  Score=356.73  Aligned_cols=202  Identities=21%  Similarity=0.242  Sum_probs=178.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      +++|+++|++++|++  +.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...   ..++.
T Consensus         9 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~   83 (214)
T PRK13543          9 PPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRF   83 (214)
T ss_pred             cceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhc
Confidence            468999999999987  7899999999999999999999999999999999999999999999999877532   23457


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ++|++|++.+++.+|+.||+.+....++..   ..+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus        84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (214)
T PRK13543         84 MAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL  160 (214)
T ss_pred             eEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999999998865544432   2345667888899854 689999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK  296 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~  296 (457)
                      |||||+|||+.+++.++++++...++|.|||++||+++++.. |||+++|..
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        161 LDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            999999999999999999988777779999999999999965 999999864

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=2.9e-46  Score=357.79  Aligned_cols=206  Identities=24%  Similarity=0.259  Sum_probs=176.4

Q ss_pred             ceEEEeeEEEeCC----C-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC--c--cCCCCc
Q psy10858         89 ADEGKNTEKEELK----P-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG--G--HPASIY  159 (457)
Q Consensus        89 ~Iei~nlsk~yg~----~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G--~--~~~~~~  159 (457)
                      ||+++|++++|+.    + +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|  .  ++....
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            5889999999963    1 14799999999999999999999999999999999999999999999984  2  332222


Q ss_pred             hh----hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHH
Q psy10858        160 HK----TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       160 ~~----~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsL  233 (457)
                      ..    ..++++||+||++.+++.+||.||+.+.....+.......+++.++++.+++..  .++++.+||||||||++|
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence            11    124579999999999999999999987655455555555667788899999954  478999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEE
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFL  294 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im  294 (457)
                      |+||+.+|++|||||||+|||+.+++.+++.++.++++|+|||++||+++++. .|||++.+
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            99999999999999999999999999999998887777999999999999986 59998876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-46  Score=372.55  Aligned_cols=231  Identities=20%  Similarity=0.297  Sum_probs=192.6

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCccCCCC--c
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-----ISQGEIWVLGGHPASI--Y  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-----p~sG~I~i~G~~~~~~--~  159 (457)
                      ..+|+++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|+++|.++...  .
T Consensus        43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            457999999999987  789999999999999999999999999999999999986     6899999999876431  1


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc------------CCCH-HHHHHHHHHHHhHcCCC-----CCCCCCC
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY------------GMDE-SIWLFQMRKYSHVLKLP-----NLERPVK  221 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~------------g~~~-~~~~~~~~~ll~~l~L~-----~~~~~~~  221 (457)
                      ....++++||+||++.+++ .||+||+.+.....            +... ....+++.++++.+++.     ..++++.
T Consensus       121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  199 (305)
T PRK14264        121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL  199 (305)
T ss_pred             HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence            2234678999999998887 59999998754321            1221 22345677788888873     2478899


Q ss_pred             CCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeE-EEEeCCeE
Q psy10858        222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEV-AFLYKGRI  299 (457)
Q Consensus       222 ~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri-~im~~GkI  299 (457)
                      +|||||||||+||+||+++|+||||||||+|||+.+++.++++++.+.+ ++|||++||+++++.. |||+ ++|++|++
T Consensus       200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i  278 (305)
T PRK14264        200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL  278 (305)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence            9999999999999999999999999999999999999999999888765 5899999999999865 9996 57899999


Q ss_pred             EEecChhhhhhcCCcccHHHHH
Q psy10858        300 IAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       300 ~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      ++.|+++++.+......+.+.|
T Consensus       279 ~~~g~~~~~~~~~~~~~~~~~~  300 (305)
T PRK14264        279 VEYDDTDKIFENPESQRVEDYI  300 (305)
T ss_pred             EEeCCHHHHHhCcccHHHHHHh
Confidence            9999999887654334444433

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=3e-46  Score=353.92  Aligned_cols=203  Identities=22%  Similarity=0.297  Sum_probs=173.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|+..+..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.|
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            46899999999985324799999999999999999999999999999999999999999999999877544333456789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||+||++.+++ .|++||+.++.   .....    .+.+.++      .++++.+||||||||++|||||+.+|++||||
T Consensus        85 ~~v~q~~~~~~-~tv~~~l~~~~---~~~~~----~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~llllD  150 (207)
T cd03369          85 TIIPQDPTLFS-GTIRSNLDPFD---EYSDE----EIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLD  150 (207)
T ss_pred             EEEecCCcccC-ccHHHHhcccC---CCCHH----HHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence            99999998886 59999997542   12221    1223332      36789999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~  305 (457)
                      |||+|||+.+++.++++++.+. +|.|+|++||+++++..||++++|++|+++..|++
T Consensus       151 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence            9999999999999999987764 58999999999999877999999999999988764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.6e-47  Score=356.73  Aligned_cols=229  Identities=22%  Similarity=0.273  Sum_probs=204.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++++..+  +.+|++|||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++......+..++-+
T Consensus         1 mi~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra   78 (259)
T COG4559           1 MIRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA   78 (259)
T ss_pred             CeeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence            6899999999988  89999999999999999999999999999999999999999999999999988877777778899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc------
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH------  239 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~------  239 (457)
                      ++||+..+-+.+||+|.+.++..-++.  ...+..+.+++++...++.. ..+...+|||||||||.+||.|++      
T Consensus        79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~  158 (259)
T COG4559          79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP  158 (259)
T ss_pred             hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence            999999997789999999998766643  22344555777888888865 688899999999999999999985      


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS  318 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~  318 (457)
                      ++++|+||||||+||+..+..++++.+.+.++|..|+.+-||+|.+. +||||++|++||+++.|+|+++++.   +.++
T Consensus       159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~---Etl~  235 (259)
T COG4559         159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD---ETLE  235 (259)
T ss_pred             CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH---HHHH
Confidence            45699999999999999999999998888888999999999999985 5999999999999999999999864   6777


Q ss_pred             HHHH
Q psy10858        319 DVFY  322 (457)
Q Consensus       319 ~~f~  322 (457)
                      .+|-
T Consensus       236 ~vyg  239 (259)
T COG4559         236 RVYG  239 (259)
T ss_pred             HHhC
Confidence            7775

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-46  Score=400.30  Aligned_cols=222  Identities=20%  Similarity=0.341  Sum_probs=190.4

Q ss_pred             cCceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCc-hhhh
Q psy10858         87 EEADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIY-HKTA  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~-~~~~  163 (457)
                      .++|+++|++++|+. +++.+++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++.... ....
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~  336 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI  336 (506)
T ss_pred             CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            357999999999942 12579999999999999999999999999999999999998 59999999998774322 1233


Q ss_pred             cCcEEEEcCCC---CCCCCCCHHHHHHHhh--hhcC---CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHH
Q psy10858        164 GSKVGYMPQEL---AMFGELTIKETLNFFG--MIYG---MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       164 r~~IGyvpQ~~---~L~~~lTV~EnL~~~~--~l~g---~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsL  233 (457)
                      ++.+||+||++   .+++.+||.||+.+..  ...+   .+.....+++.++++.+++. . .++++.+|||||||||+|
T Consensus       337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l  416 (506)
T PRK13549        337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL  416 (506)
T ss_pred             HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence            56799999996   4788899999998643  1222   13334456688899999995 3 689999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |+||+.+|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++
T Consensus       417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            999999999999999999999999999999988877779999999999999965 999999999999999988776

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.5e-46  Score=360.29  Aligned_cols=210  Identities=22%  Similarity=0.290  Sum_probs=176.8

Q ss_pred             ccCceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         86 EEEADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      ...+++++|++++|++. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++........+
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            35789999999999752 14699999999999999999999999999999999999999999999999876543333456


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHH-----HHHHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHH
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW-----LFQMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~-----~~~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      +.++|++|++.+++ .||+||+.+.....  .....     ...+.++++.+  ++.. .++++.+|||||||||+||+|
T Consensus        88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara  164 (226)
T cd03248          88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA  164 (226)
T ss_pred             hhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence            78999999998876 59999998643221  11111     11245667777  6643 688899999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI  299 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI  299 (457)
                      |+.+|++|||||||+|||+.+++.++++++.+.+ ++|||++||+++++..||++++|++|++
T Consensus       165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            9999999999999999999999999999877654 6999999999999977999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=3.3e-46  Score=359.14  Aligned_cols=200  Identities=25%  Similarity=0.303  Sum_probs=175.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      +.+++++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..            
T Consensus        23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~------------   88 (224)
T cd03220          23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL------------   88 (224)
T ss_pred             hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh------------
Confidence            788999999998  899999999999999999999999999999999999999999999999975421            


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ..+...+++.+||+||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+++|++|||||
T Consensus        89 ~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  168 (224)
T cd03220          89 LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE  168 (224)
T ss_pred             hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            1112345567999999988766566555555667788889999954 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      ||+|||+.+++.+++.++.++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus       169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999999999999999987776678999999999999865 9999999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.9e-46  Score=352.89  Aligned_cols=198  Identities=27%  Similarity=0.363  Sum_probs=175.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +++++|++++|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++..  .. .++.++
T Consensus         2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~   76 (207)
T PRK13539          2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH   76 (207)
T ss_pred             EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence            6899999999987  789999999999999999999999999999999999999999999999987532  11 457899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |++|++.+++.+||.||+.+....++...    +++.++++.+++.. .++++++||||||||++||+||+.+|++||||
T Consensus        77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  152 (207)
T PRK13539         77 YLGHRNAMKPALTVAENLEFWAAFLGGEE----LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD  152 (207)
T ss_pred             EecCCCcCCCCCcHHHHHHHHHHhcCCcH----HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999988889999999987665544322    34677889999954 68899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      |||+|||+.+++.++++++...++|+|||++||+++++.. |+++.+..
T Consensus       153 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence            9999999999999999988766779999999999999987 88877743

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.7e-46  Score=397.22  Aligned_cols=212  Identities=20%  Similarity=0.234  Sum_probs=185.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++........++.+|
T Consensus         3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~   80 (490)
T PRK10938          3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS   80 (490)
T ss_pred             eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence            6999999999987  77999999999999999999999999999999999999999999999887764333233456799


Q ss_pred             EEcCCCCC--C-C-----CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        169 YMPQELAM--F-G-----ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       169 yvpQ~~~L--~-~-----~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |++|++.+  + .     .+|++|++.+.        ....+++.++++.+++.. .++++.+|||||||||+||+||+.
T Consensus        81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~  152 (490)
T PRK10938         81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS  152 (490)
T ss_pred             eeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            99998653  1 1     46888887532        123456778899999964 789999999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|++|||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++|++|+++..|+++++.+
T Consensus       153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999988877779999999999999965 99999999999999999988764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=4.5e-46  Score=344.32  Aligned_cols=173  Identities=28%  Similarity=0.450  Sum_probs=157.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++.+..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++........+++++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            57899999997533569999999999999999999999999999999999999999999999988765444445678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      ++|++.+++. |++||+                                    ||||||||++|||||+.+|++||||||
T Consensus        81 ~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP  123 (173)
T cd03246          81 LPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP  123 (173)
T ss_pred             ECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            9999988874 999987                                    999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI  299 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI  299 (457)
                      |+|||+.+++.++++++.++++|+|||++||+++++..||++++|++|++
T Consensus       124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            99999999999999988777679999999999999877999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=4.9e-46  Score=369.74  Aligned_cols=212  Identities=24%  Similarity=0.344  Sum_probs=183.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|.++...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++........+++|+|
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV   81 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence            78999999995333679999999999999999999999999999999999998 78999999988765554556789999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCC-----------CChhHHHHHHHHHHh
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKY-----------LSGGQKRRLSFTIAI  237 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~-----------LSGGqkQRlsLA~AL  237 (457)
                      +||++.+|+. |+++|+..+..   ...    +++.++++.++|.. .++++..           ||||||||++|||||
T Consensus        82 v~q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal  153 (275)
T cd03289          82 IPQKVFIFSG-TFRKNLDPYGK---WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV  153 (275)
T ss_pred             ECCCcccchh-hHHHHhhhccC---CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999874 99999964321   222    23556677788743 4556655           999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +.+|+||||||||++||+.+++.+.+.++.. .+++|||++||+++++..||||++|++|+++..|+|+++...
T Consensus       154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~  226 (275)
T cd03289         154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE  226 (275)
T ss_pred             hcCCCEEEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence            9999999999999999999999999998765 358999999999999877999999999999999999999874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=1.2e-45  Score=361.75  Aligned_cols=202  Identities=27%  Similarity=0.409  Sum_probs=176.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++++++|++++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|           +..+
T Consensus         3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i   69 (251)
T PRK09544          3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI   69 (251)
T ss_pred             cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence            47999999999987  7899999999999999999999999999999999999999999999875           1369


Q ss_pred             EEEcCCCCCCCCC--CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        168 GYMPQELAMFGEL--TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       168 GyvpQ~~~L~~~l--TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      ||+||++.+++.+  |+.+++.+..   +..    .+++.++++.+++.. .++++.+|||||||||+||+||+++|++|
T Consensus        70 ~~v~q~~~~~~~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  142 (251)
T PRK09544         70 GYVPQKLYLDTTLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL  142 (251)
T ss_pred             EEeccccccccccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999887764  7777765321   222    234667888899965 68899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.+++.++++++.+.++ |+|||++||+++++.. ||++++|+ |++++.|+++++.+
T Consensus       143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~  209 (251)
T PRK09544        143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL  209 (251)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence            999999999999999999998776655 8999999999999864 99999996 57999999988764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=9.4e-46  Score=349.97  Aligned_cols=196  Identities=23%  Similarity=0.275  Sum_probs=172.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus         1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   77 (201)
T cd03231           1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY   77 (201)
T ss_pred             CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence            578999999987  78999999999999999999999999999999999999999999999998764322 345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ++|++.+++.+|++||+.++....      ..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus        78 ~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  151 (201)
T cd03231          78 LGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE  151 (201)
T ss_pred             eccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            999999998999999998753211      2345678888999964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEE
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFL  294 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im  294 (457)
                      ||+|||+.+++.++++++..+++|.|||++||+..+.. .|++++++
T Consensus       152 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         152 PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            99999999999999998777677999999999988764 58998776

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.7e-46  Score=395.67  Aligned_cols=221  Identities=19%  Similarity=0.320  Sum_probs=188.5

Q ss_pred             cCceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCCc-hhhh
Q psy10858         87 EEADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASIY-HKTA  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~~-~~~~  163 (457)
                      .++|+++|++++|+. +++.+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.... ....
T Consensus       255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~  334 (500)
T TIGR02633       255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI  334 (500)
T ss_pred             CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            357999999999932 125799999999999999999999999999999999999995 8999999998775322 1234


Q ss_pred             cCcEEEEcCCC---CCCCCCCHHHHHHHhhh--hc---CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHH
Q psy10858        164 GSKVGYMPQEL---AMFGELTIKETLNFFGM--IY---GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       164 r~~IGyvpQ~~---~L~~~lTV~EnL~~~~~--l~---g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsL  233 (457)
                      ++++||+||++   .+++.+||++|+.+...  ..   +.......+++.++++.+++. . .++++.+|||||||||+|
T Consensus       335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  414 (500)
T TIGR02633       335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL  414 (500)
T ss_pred             hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence            67899999996   58899999999976431  11   223334456678899999995 3 689999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~  307 (457)
                      |+||+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|++++..+.++
T Consensus       415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  489 (500)
T TIGR02633       415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA  489 (500)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence            999999999999999999999999999999988877789999999999999965 99999999999998876543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=7.8e-46  Score=344.22  Aligned_cols=174  Identities=34%  Similarity=0.542  Sum_probs=159.1

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc--hhhhcCcE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY--HKTAGSKV  167 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~--~~~~r~~I  167 (457)
                      |+++|++++|++  +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....  ....++.+
T Consensus         1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   78 (178)
T cd03229           1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI   78 (178)
T ss_pred             CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence            478999999987  78999999999999999999999999999999999999999999999998775432  23456789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      +|++|++.+++.+|++||+.+.                                 ||||||||++||+||+.+|++||||
T Consensus        79 ~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilD  125 (178)
T cd03229          79 GMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLD  125 (178)
T ss_pred             EEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            9999999999889999998643                                 9999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCe
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGR  298 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~Gk  298 (457)
                      |||+|||+.++..++++++.++++ |+|||++||+++++. .||++++|++|+
T Consensus       126 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999998877666 899999999999997 499999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.1e-45  Score=341.64  Aligned_cols=172  Identities=41%  Similarity=0.710  Sum_probs=158.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ...++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   77 (173)
T cd03230           1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY   77 (173)
T ss_pred             CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence            478999999987  68999999999999999999999999999999999999999999999998775432 344678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      +||++.+++.+|+.||+.                                   ||||||||++|||||+.+|++||||||
T Consensus        78 ~~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEP  122 (173)
T cd03230          78 LPEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEP  122 (173)
T ss_pred             EecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            999999999999999973                                   999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      |+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|++
T Consensus       123 t~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            99999999999999988877679999999999999974 999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.7e-45  Score=349.05  Aligned_cols=192  Identities=24%  Similarity=0.291  Sum_probs=166.1

Q ss_pred             ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhh
Q psy10858         89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      .+.++|++|.|+++  ++.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|+++|.++.... ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence            57899999999753  4789999999999999999999999999999999999999   89999999998875432 234


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ++.++|++|++.+++.+||+||+.+.....                      .++++.+||||||||++||+||+++|++
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l  139 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASV  139 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence            678999999999999999999997653211                      4678899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEE-EcCChhHHh-ccCeEEEEeCCeEEEec
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIM-TTQYIEEAN-DASEVAFLYKGRIIAQD  303 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIi-sTH~~~ea~-~~dri~im~~GkI~~~g  303 (457)
                      |||||||+|||+.+++.++++++.+.++ +.|+|+ ++|+.+++. .||++++|++|+++..|
T Consensus       140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            9999999999999999999998776554 666555 566678875 59999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.3e-45  Score=388.67  Aligned_cols=236  Identities=23%  Similarity=0.315  Sum_probs=205.7

Q ss_pred             CceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ceEEEEcCccCCCCch-
Q psy10858         88 EADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS----QGEIWVLGGHPASIYH-  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~----sG~I~i~G~~~~~~~~-  160 (457)
                      ++++++||++.|....  ..||+||||+|.+||++||+|.|||||||+.++|.|++++.    +|+|.++|+++..... 
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            4899999999997532  36999999999999999999999999999999999999987    8999999987654332 


Q ss_pred             ---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC-CCHHHHHHHHHHHHhHcCCCC-C--CCCCCCCChhHHHHH
Q psy10858        161 ---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG-MDESIWLFQMRKYSHVLKLPN-L--ERPVKYLSGGQKRRL  231 (457)
Q Consensus       161 ---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g-~~~~~~~~~~~~ll~~l~L~~-~--~~~~~~LSGGqkQRl  231 (457)
                         ...+++|+|+||++  +|.|-+||.+.+.-..+.++ .+.++..+++.++++.++|++ .  +++|++|||||||||
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence               23457899999998  46666999988876655554 557888899999999999975 2  469999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      .||+||+.+|++||+||||++||+..+.+|+++++.++ +.|+++|++|||++.+.. ||||++|++|++++.|++++++
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~  243 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL  243 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence            99999999999999999999999999999999977765 569999999999999865 9999999999999999999999


Q ss_pred             hcCCcccHHHHHHh
Q psy10858        310 SKYSMPKLSDVFYK  323 (457)
Q Consensus       310 ~~~~~~~l~~~f~~  323 (457)
                      +++..++.......
T Consensus       244 ~~p~hpYT~~Ll~a  257 (539)
T COG1123         244 SNPQHPYTRGLLAA  257 (539)
T ss_pred             hccCCcccHHHHhh
Confidence            99887776655443

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=6.6e-46  Score=344.41  Aligned_cols=178  Identities=30%  Similarity=0.468  Sum_probs=160.0

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++.+..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ....++.++|
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   79 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV   79 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence            578999999976223799999999999999999999999999999999999999999999999876432 2334678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      +||++.+++ .|++||+                                 +.+||||||||++|||||+.+|++||||||
T Consensus        80 ~~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP  125 (178)
T cd03247          80 LNQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEP  125 (178)
T ss_pred             EccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            999998885 6999987                                 678999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD  303 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g  303 (457)
                      |+|||+.+++.+++.++.+. ++.|||++||+++++..|||+++|++|++++.|
T Consensus       126 ~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         126 TVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             cccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999987764 589999999999999779999999999998654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.4e-45  Score=348.15  Aligned_cols=197  Identities=24%  Similarity=0.276  Sum_probs=173.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++++|++  ..+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. .....++++|
T Consensus         1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~   77 (200)
T PRK13540          1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC   77 (200)
T ss_pred             CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence            5889999999987  789999999999999999999999999999999999999999999999987753 2234567899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |++|++.+++.+||+||+.+.....   ..  ...+.++++.+++.. .++++.+||||||||++|||||+++|++||||
T Consensus        78 ~~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD  152 (200)
T PRK13540         78 FVGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD  152 (200)
T ss_pred             EeccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9999999988999999998754221   11  235678888888864 68889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF  293 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i  293 (457)
                      |||+|||+.+++.++++++.++++|.|||++||+.+.+..||.-.+
T Consensus       153 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~  198 (200)
T PRK13540        153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY  198 (200)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence            9999999999999999988776779999999999999988886443

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.1e-45  Score=344.41  Aligned_cols=175  Identities=23%  Similarity=0.448  Sum_probs=158.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~  166 (457)
                      ++++++|++++|      +++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ....+++
T Consensus         3 ~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (182)
T cd03215           3 PVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG   76 (182)
T ss_pred             cEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence            579999999998      799999999999999999999999999999999999999999999998876543 2234678


Q ss_pred             EEEEcCCC---CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VGYMPQEL---AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IGyvpQ~~---~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ++|+||++   .+++.+|++||+.++..                               |||||||||+||+||+++|++
T Consensus        77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~l  125 (182)
T cd03215          77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPRV  125 (182)
T ss_pred             eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCCE
Confidence            99999995   57888999999976421                               999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      |||||||+|||+.+++.++++++.+.++|.|||++||+++++.. ||++++|++|++
T Consensus       126 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         126 LILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             EEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999988776679999999999999976 999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.5e-46  Score=395.08  Aligned_cols=216  Identities=19%  Similarity=0.344  Sum_probs=185.2

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcC
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~  165 (457)
                      .++++++|+++.|+    .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... ...++
T Consensus       263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~  338 (510)
T PRK09700        263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK  338 (510)
T ss_pred             CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence            35899999998763    37999999999999999999999999999999999999999999999987743222 23456


Q ss_pred             cEEEEcCC---CCCCCCCCHHHHHHHhhhhc--------CC-CHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHH
Q psy10858        166 KVGYMPQE---LAMFGELTIKETLNFFGMIY--------GM-DESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRL  231 (457)
Q Consensus       166 ~IGyvpQ~---~~L~~~lTV~EnL~~~~~l~--------g~-~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRl  231 (457)
                      ++||+||+   ..+++.+||.||+.+....+        +. ......+++.++++.+++. . .++++++|||||||||
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv  418 (510)
T PRK09700        339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV  418 (510)
T ss_pred             CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence            89999998   46889999999998643211        11 2233345677889999995 4 7999999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~  306 (457)
                      +|||||+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|+++..++..
T Consensus       419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  494 (510)
T PRK09700        419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNR  494 (510)
T ss_pred             HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCc
Confidence            99999999999999999999999999999999988877779999999999999865 9999999999999887663

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.4e-45  Score=361.56  Aligned_cols=220  Identities=18%  Similarity=0.213  Sum_probs=182.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ...|+++|++++|++.++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++........++.
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~   96 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR   96 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence            45799999999997633579999999999999999999999999999999999999999999999988765444455678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      +||++|++.+++ .|++||+.....   ........     .+.++++.+  ++.. .++.+.+||||||||++|||||+
T Consensus        97 i~~v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~  172 (257)
T cd03288          97 LSIILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV  172 (257)
T ss_pred             EEEECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence            999999998886 599999864311   11111111     122333333  3432 46678899999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|++|||||||+|||+.+++.++++++.+ .++.|||++||+++++..|||+++|++|++++.|+++++...
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  244 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ  244 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence            999999999999999999999999998775 458999999999999977999999999999999999988754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-45  Score=387.87  Aligned_cols=217  Identities=24%  Similarity=0.310  Sum_probs=198.7

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcC
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~  165 (457)
                      .+.++++|++|+|+.  ..||++|||+|.+||+++|+|.||||||||+|+|+|.++|++|+|+++|+.....++ .....
T Consensus         6 ~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~   83 (500)
T COG1129           6 PPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA   83 (500)
T ss_pred             cceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence            468999999999999  999999999999999999999999999999999999999999999999998864433 34467


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcC----CCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYG----MDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g----~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      .|+.++|+.+|.|+|||.||+.++....+    ++++...++..++++.+++. ..+.++++||.||||.|+|||||..+
T Consensus        84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~  163 (500)
T COG1129          84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD  163 (500)
T ss_pred             CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            89999999999999999999987654332    57788888899999999883 47899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~  305 (457)
                      ++|||||||||+|+....+.++++++.++++|++||++||.|+|+.. ||||.+|++|+++...+.
T Consensus       164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence            99999999999999999999999999999999999999999999965 999999999999998873

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=9.6e-46  Score=346.08  Aligned_cols=181  Identities=29%  Similarity=0.451  Sum_probs=158.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcCcEEEEcCCCC--CCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGSKVGYMPQELA--MFGE  179 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~~IGyvpQ~~~--L~~~  179 (457)
                      +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...  .....++.+||+||++.  ++ .
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~   83 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A   83 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence            6799999999999999999999999999999999999999999999999876421  12234568999999973  44 5


Q ss_pred             CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHH
Q psy10858        180 LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR  258 (457)
Q Consensus       180 lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r  258 (457)
                      .||+||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.++
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            799999988655555555556667888999999964 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        259 KRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       259 ~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      +.++++++.++++|+|||++||+++++
T Consensus       164 ~~~~~~l~~~~~~~~tili~sH~~~~~  190 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence            999999888777799999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-45  Score=339.23  Aligned_cols=214  Identities=24%  Similarity=0.333  Sum_probs=195.5

Q ss_pred             CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh----
Q psy10858         88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK----  161 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~----  161 (457)
                      .+|++++++|..+..  ...+|++|+|.|++||-++|+|||||||||||-+++|+..|++|+|.+.|++....+..    
T Consensus         5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            378999999998753  36799999999999999999999999999999999999999999999999988665422    


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ...++||+|||.+.|.|+||..||+...+.+.|-+..+......++++.+||.. ++.+|.+|||||||||+||||++..
T Consensus        85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~  164 (228)
T COG4181          85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR  164 (228)
T ss_pred             hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence            235789999999999999999999999999998766677778889999999965 8999999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEE
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIA  301 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~  301 (457)
                      |++||.||||-+||...-++|.++ ....++.|+|.+++|||...|.+|+|++-|.+|+++.
T Consensus       165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence            999999999999999999999999 5666788999999999999999999999999999975

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.5e-44  Score=391.28  Aligned_cols=217  Identities=20%  Similarity=0.276  Sum_probs=184.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||++.|.++ +.+|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.++|.++...+....|++||
T Consensus       349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~  426 (588)
T PRK11174        349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS  426 (588)
T ss_pred             eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence            49999999766432 67999999999999999999999999999999999999 99999999999998877777889999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ||||++.+|+. |++||+.++..  ..++++..+.++.     .++.+  |+.. ......+||||||||++|||||+++
T Consensus       427 ~v~Q~~~LF~~-TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~  503 (588)
T PRK11174        427 WVGQNPQLPHG-TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP  503 (588)
T ss_pred             EecCCCcCCCc-CHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999999975 99999987531  2344444333322     22222  2211 2345677999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+|||||||||+||+.+.+.+.+.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~  573 (588)
T PRK11174        504 CQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA  573 (588)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence            99999999999999999999999887753 58999999999999989999999999999999999999865

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-45  Score=344.51  Aligned_cols=214  Identities=28%  Similarity=0.374  Sum_probs=197.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .++.+.+++.+|.+....+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.++|+.+...     ...-
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP-----gaer   76 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP-----GAER   76 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC-----Cccc
Confidence            46788999999988444599999999999999999999999999999999999999999999999988643     3456


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |.|||++.|+|.+|+.+|+.|+.++.|+++.+..+++.+.+..++|.. .++++-+|||||||||.|||||+.+|++|+|
T Consensus        77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL  156 (259)
T COG4525          77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL  156 (259)
T ss_pred             eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence            999999999999999999999999999999999999999999999965 5889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecChh
Q psy10858        247 DEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSPD  306 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~~  306 (457)
                      |||+++||.-.|+++-++ ++.++..|+.++++||+++||.. ++|+++|.  .|+|+..-+++
T Consensus       157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            999999999999999999 77888889999999999999975 99999998  68888776664

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=4.7e-45  Score=345.24  Aligned_cols=184  Identities=26%  Similarity=0.357  Sum_probs=164.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKT-AGSK  166 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~-~r~~  166 (457)
                      ++++|++++|++  +.+++|+||++++||+++|+|+||||||||+++|+|+  .+|++|+|.++|+++....... .+..
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~   78 (200)
T cd03217           1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG   78 (200)
T ss_pred             CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence            478999999987  7899999999999999999999999999999999999  5799999999999876543222 2456


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ++|+||++.+++.+++.+++                              ++...+||||||||++|||||+.+|++|||
T Consensus        79 i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illl  128 (200)
T cd03217          79 IFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAIL  128 (200)
T ss_pred             EEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999988988776                              112368999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh--ccCeEEEEeCCeEEEecCh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN--DASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~--~~dri~im~~GkI~~~gs~  305 (457)
                      ||||+|||+.+++.++++++.+.++|+|||++||+++++.  .|||+++|++|++++.|+.
T Consensus       129 DEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~  189 (200)
T cd03217         129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK  189 (200)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence            9999999999999999998877767899999999999997  5999999999999999844

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=4.8e-45  Score=343.86  Aligned_cols=184  Identities=29%  Similarity=0.439  Sum_probs=163.8

Q ss_pred             ceEEEeeEEEeCCC----CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhh
Q psy10858         89 ADEGKNTEKEELKP----SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~----~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~  162 (457)
                      .++++|++++|++.    .+.+++|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++..   ..
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence            58899999999752    257999999999999999999999999999999999999  9999999999987753   23


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      .++.++|+||++.+++.+|++||+.+.....                            +||||||||++|||||+.+|+
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------------------------~LS~G~~qrv~laral~~~p~  131 (194)
T cd03213          80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR----------------------------GLSGGERKRVSIALELVSNPS  131 (194)
T ss_pred             hhheEEEccCcccCCCCCcHHHHHHHHHHhc----------------------------cCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999997532110                            899999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HHh-ccCeEEEEeCCeEEEec
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EAN-DASEVAFLYKGRIIAQD  303 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea~-~~dri~im~~GkI~~~g  303 (457)
                      +|||||||+|||+.+++.++++++.+.++|+|||++||+++ ++. .||++++|++|++++.|
T Consensus       132 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         132 LLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            99999999999999999999998887667999999999996 565 59999999999997653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=4.4e-45  Score=344.06  Aligned_cols=195  Identities=24%  Similarity=0.297  Sum_probs=169.1

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   77 (198)
T TIGR01189         1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY   77 (198)
T ss_pred             CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence            578999999987  88999999999999999999999999999999999999999999999998765432 234578999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      ++|++.+++.+|+.||+.++....+.  +  .+++.++++.+++.. .++++.+|||||||||+||+||+.+|++|||||
T Consensus        78 ~~q~~~~~~~~tv~~~l~~~~~~~~~--~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  153 (198)
T TIGR01189        78 LGHLPGLKPELSALENLHFWAAIHGG--A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE  153 (198)
T ss_pred             eccCcccccCCcHHHHHHHHHHHcCC--c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999998889999999876554431  1  235677888899964 688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEE
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVA  292 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~  292 (457)
                      ||+|||+.+++.+++++..++++|.|||++||+...+ .|++++
T Consensus       154 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~  196 (198)
T TIGR01189       154 PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL  196 (198)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence            9999999999999999887767799999999998543 245554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-44  Score=356.43  Aligned_cols=211  Identities=22%  Similarity=0.310  Sum_probs=184.4

Q ss_pred             ceEEEeeEEEeCC------------------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858         89 ADEGKNTEKEELK------------------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus        89 ~Iei~nlsk~yg~------------------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      -++++||+|.|..                  ..+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            4678888877743                  1256999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHH
Q psy10858        151 LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKR  229 (457)
Q Consensus       151 ~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQ  229 (457)
                      +|.             +++++|+..+++.+|+.+|+.+.....+.+.++....+..+++.+++.. .++.+.+|||||||
T Consensus        84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q  150 (264)
T PRK13546         84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRA  150 (264)
T ss_pred             CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence            873             4577888778888999999987655556555555666677888888854 68899999999999


Q ss_pred             HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||+||+||+.+|++|||||||+|||+.+++.+++.+..++++|+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus       151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  230 (264)
T PRK13546        151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV  230 (264)
T ss_pred             HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999987777779999999999999965 999999999999999999998


Q ss_pred             hhcC
Q psy10858        309 KSKY  312 (457)
Q Consensus       309 ~~~~  312 (457)
                      ..++
T Consensus       231 ~~~~  234 (264)
T PRK13546        231 LPKY  234 (264)
T ss_pred             HHHh
Confidence            7653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8.8e-45  Score=341.31  Aligned_cols=184  Identities=28%  Similarity=0.391  Sum_probs=162.6

Q ss_pred             CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCchhhh
Q psy10858         88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      ..|+++|+++.|++.  ++.+++|+||+|++||+++|+||||||||||+|+|+|+.  +|++|+|.++|+++.    ...
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~   77 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNF   77 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHh
Confidence            368999999999742  257999999999999999999999999999999999986  489999999998764    234


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ++.++|++|++.+++.+|++||+.+....                +            +|||||||||+|||||+.+|++
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~------------~LSgGe~qrv~la~al~~~p~v  129 (192)
T cd03232          78 QRSTGYVEQQDVHSPNLTVREALRFSALL----------------R------------GLSVEQRKRLTIGVELAAKPSI  129 (192)
T ss_pred             hhceEEecccCccccCCcHHHHHHHHHHH----------------h------------cCCHHHhHHHHHHHHHhcCCcE
Confidence            56899999999999999999999763210                0            8999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH-H-hccCeEEEEeC-CeEEEec
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE-A-NDASEVAFLYK-GRIIAQD  303 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e-a-~~~dri~im~~-GkI~~~g  303 (457)
                      |||||||+|||+.+++.+++.++.++++|+|||++||++++ + ..||++++|++ |++++.|
T Consensus       130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            99999999999999999999988877679999999999984 5 45999999999 9998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=3.6e-45  Score=402.37  Aligned_cols=221  Identities=26%  Similarity=0.372  Sum_probs=190.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .-.|+++|++++|+..+..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++...+....|+.
T Consensus       469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~  548 (709)
T COG2274         469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ  548 (709)
T ss_pred             CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence            34699999999999854579999999999999999999999999999999999999999999999999988888889999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHH-----HHHHhHcCC--C-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM-----RKYSHVLKL--P-NLERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~-----~~ll~~l~L--~-~~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ||||+|++.||.. |++||+.+....  .+.+++.+.+     ++....+-+  . .......+||||||||++|||||+
T Consensus       549 ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl  625 (709)
T COG2274         549 VGYVLQDPFLFSG-SIRENIALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL  625 (709)
T ss_pred             eeEEcccchhhcC-cHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999875 999999876432  2223322221     122222211  1 135667789999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|+|||||||||+||+.+.+.+.+.+.... .|+|+|++||++..++.||||++|++|+|+.+|+.+++.+.
T Consensus       626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         626 SKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             cCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence            9999999999999999999999999987764 58999999999999999999999999999999999999876

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-44  Score=399.23  Aligned_cols=213  Identities=21%  Similarity=0.312  Sum_probs=185.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|++.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....|+.|
T Consensus       450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  529 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL  529 (686)
T ss_pred             ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence            36999999999964336799999999999999999999999999999999999999999999999999887777889999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-------C-----CCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-------N-----LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-------~-----~~~~~~~LSGGqkQRlsLA~  235 (457)
                      |||||++.+|+. |++||+.++..   .++++.    .++++..++.       .     ......+||||||||++|||
T Consensus       530 ~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i----~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR  601 (686)
T TIGR03797       530 GVVLQNGRLMSG-SIFENIAGGAP---LTLDEA----WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR  601 (686)
T ss_pred             EEEccCCccCcc-cHHHHHhcCCC---CCHHHH----HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence            999999999875 99999987533   334333    3334433331       1     23445679999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++||||||||+||+.+.+++.+.++..   ++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus       602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~  674 (686)
T TIGR03797       602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR  674 (686)
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999997664   5899999999999989999999999999999999999865

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-46  Score=350.33  Aligned_cols=229  Identities=24%  Similarity=0.320  Sum_probs=210.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++|+|++  +.+|+++|++|++|.+++|+|||||||||||.+++.|+++++|+|+++|.++...+...+.++++
T Consensus         1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS   78 (252)
T COG4604           1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS   78 (252)
T ss_pred             CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence            6899999999999  99999999999999999999999999999999999999999999999999998887778888999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhh--cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMI--YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l--~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      .+-|+..+-..+||+|-+.|+..-  .|...++.+..++++++.++|.. .+++..+||||||||..+|+.|+++.+.++
T Consensus        79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl  158 (252)
T COG4604          79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL  158 (252)
T ss_pred             HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence            999999999999999999885433  35556677788999999999976 699999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      ||||.++||......++++++.+.++ |+||++|-||++.|.. +|+|+-|++|+++..|+|+++.+.   +.++++|.
T Consensus       159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~---~~L~eiyd  234 (252)
T COG4604         159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP---EILSEIYD  234 (252)
T ss_pred             ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH---HHHHHHhc
Confidence            99999999999999999997776554 9999999999999975 999999999999999999999864   66777775

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=5.3e-45  Score=378.23  Aligned_cols=216  Identities=27%  Similarity=0.364  Sum_probs=198.6

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcC
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~  165 (457)
                      .+++++++++|+|++  ..|+++|||+|++|||.+|+|.||||||||||+|.|+++|++|+|+++|+++.-.+ ....+.
T Consensus         2 ~~~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~   79 (501)
T COG3845           2 EPALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL   79 (501)
T ss_pred             CceEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence            368999999999998  99999999999999999999999999999999999999999999999999876433 345678


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhh---cCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l---~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      .||+|+|++.|++.+||.||+.++..-   ..++.+..++++.++.+.++|+ +.++++.+||-||||||.|.+||.++|
T Consensus        80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a  159 (501)
T COG3845          80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA  159 (501)
T ss_pred             CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence            899999999999999999999987642   2356778889999999999997 489999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs  304 (457)
                      ++|||||||+-|-|...+++++.++.++++|+|||++||-++|+.. |||+.+|+.|+++....
T Consensus       160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            9999999999999999999999999999999999999999999976 99999999999876655

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=1.8e-44  Score=388.05  Aligned_cols=220  Identities=23%  Similarity=0.345  Sum_probs=187.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|++.++.+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            46999999999965336799999999999999999999999999999999999999999999999988766656678899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      ||+||++.+|+. |++||+.++..  ..++++..+.     .++.++.+  ++.. .++...+||||||||++|||||++
T Consensus       395 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       395 GYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             EEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            999999999976 99999986432  2333333222     22334444  3322 456788999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|++|||||||+|||+.+++.+++.+....++|+|+|++||+++.++.||+|++|++|++++.|+++++.+
T Consensus       472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            99999999999999999999999998776556899999999999888899999999999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1e-44  Score=386.61  Aligned_cols=214  Identities=19%  Similarity=0.364  Sum_probs=185.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~  166 (457)
                      ++++++|+++       .+|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.++|+++..... ...+++
T Consensus       256 ~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        256 VRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             cEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence            5789999984       26999999999999999999999999999999999999999999999987754322 234567


Q ss_pred             EEEEcCCC---CCCCCCCHHHHHHHhhh--h---cC-CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHH
Q psy10858        167 VGYMPQEL---AMFGELTIKETLNFFGM--I---YG-MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       167 IGyvpQ~~---~L~~~lTV~EnL~~~~~--l---~g-~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      +||+||++   .+++.+||.||+.+...  .   ++ .+.+...+++.++++.+++. . .++++.+|||||||||+||+
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~  408 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR  408 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence            99999996   57888999999986421  1   11 23334456678899999994 3 79999999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||+.+|++|||||||+|||+.+++.++++++.+.++|.|||++|||++++.. |||+++|++|+++..++++++
T Consensus       409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            9999999999999999999999999999988877779999999999999965 999999999999999988765

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=7.5e-45  Score=335.60  Aligned_cols=171  Identities=32%  Similarity=0.503  Sum_probs=154.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++....+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........++.++|
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            47899999998721279999999999999999999999999999999999999999999999987754333345678999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      +||++.+++ .|+.||+                                    |||||||||+||+||+.+|++||||||
T Consensus        81 ~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP  123 (171)
T cd03228          81 VPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEA  123 (171)
T ss_pred             EcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            999998876 5999887                                    999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR  298 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk  298 (457)
                      |+|||+.+++.+++++..+. +++|||++||+++++..||++++|++|+
T Consensus       124 ~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         124 TSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             CcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            99999999999999987765 4799999999999996799999999985

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=3.8e-44  Score=395.71  Aligned_cols=220  Identities=24%  Similarity=0.368  Sum_probs=186.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|++.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....|+.|
T Consensus       462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i  541 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI  541 (694)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence            46999999999975446799999999999999999999999999999999999999999999999998877767788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+|+. |++||+.++..  ..++++..+.++.     .++.+  |+. .......+||||||||++|||||+.
T Consensus       542 ~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~  618 (694)
T TIGR03375       542 GYVPQDPRLFYG-TLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR  618 (694)
T ss_pred             EEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999875 99999987532  2334433333221     11111  111 1234567899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++||||||||+||+.+.+.+++.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            999999999999999999999999987764 48999999999999988999999999999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=6.4e-45  Score=338.69  Aligned_cols=177  Identities=34%  Similarity=0.514  Sum_probs=157.3

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM  170 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv  170 (457)
                      +++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........++.+||+
T Consensus         1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   78 (180)
T cd03214           1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV   78 (180)
T ss_pred             CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence            47899999987  7899999999999999999999999999999999999999999999999887544433445679999


Q ss_pred             cCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       171 pQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      ||                                  +++.+++.. .++.+.+||||||||++|||||+.+|++||||||
T Consensus        79 ~q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  124 (180)
T cd03214          79 PQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP  124 (180)
T ss_pred             HH----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            99                                  455566643 5778999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEec
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQD  303 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~g  303 (457)
                      |+|||+.+++.++++++.++++ |.|||++||+++++. .||++++|++|+++..|
T Consensus       125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999998877665 899999999999985 59999999999997643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1.6e-44  Score=399.49  Aligned_cols=218  Identities=23%  Similarity=0.337  Sum_probs=185.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|++.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....|++|
T Consensus       476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  555 (710)
T TIGR03796       476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV  555 (710)
T ss_pred             CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence            46999999999986446799999999999999999999999999999999999999999999999998777667788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+|+. |++||+.++..  ..++++..+.++.     .++.+  |+.. ......+||||||||++|||||++
T Consensus       556 ~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~  632 (710)
T TIGR03796       556 AMVDQDIFLFEG-TVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR  632 (710)
T ss_pred             eEEecCChhhhc-cHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999865 99999987521  2334433332221     11111  1211 234567899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++||||||||+||+.+.+.+++.++.   .++|+|++||+++.+..||||++|++|++++.|+.+++.++
T Consensus       633 ~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~  701 (710)
T TIGR03796       633 NPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV  701 (710)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence            9999999999999999999999999764   48999999999999989999999999999999999999864

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=389.55  Aligned_cols=216  Identities=20%  Similarity=0.296  Sum_probs=184.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .++++|++++|.+.++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....++.|+
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence            59999999999754467999999999999999999999999999999999999999999999999987766666788999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-------CCC-C----CCCCCCCChhHHHHHHHHHH
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-------LPN-L----ERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-------L~~-~----~~~~~~LSGGqkQRlsLA~A  236 (457)
                      |+||++.+|+. |++||+.++.. -..++++..    ++++..+       ++. .    .....+||||||||++||||
T Consensus       421 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i~----~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa  494 (582)
T PRK11176        421 LVSQNVHLFND-TIANNIAYART-EQYSREQIE----EAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA  494 (582)
T ss_pred             EEccCceeecc-hHHHHHhcCCC-CCCCHHHHH----HHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence            99999999875 99999986421 112333333    3333333       221 2    33456799999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+++|++||||||||+||+.+.+.+.+.+... .+++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~  568 (582)
T PRK11176        495 LLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ  568 (582)
T ss_pred             HHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999998775 357999999999998888999999999999999999999865

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=384.90  Aligned_cols=215  Identities=16%  Similarity=0.270  Sum_probs=184.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~  166 (457)
                      ..+++++++.      ..+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ....++.
T Consensus       256 ~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~  329 (501)
T PRK11288        256 VRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG  329 (501)
T ss_pred             cEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence            4688999972      24899999999999999999999999999999999999999999999998764322 2234578


Q ss_pred             EEEEcCCC---CCCCCCCHHHHHHHhhhhc----C--CCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHH
Q psy10858        167 VGYMPQEL---AMFGELTIKETLNFFGMIY----G--MDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       167 IGyvpQ~~---~L~~~lTV~EnL~~~~~l~----g--~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      +||+||++   .+++.+|+.||+.+.....    +  .......+.+.++++.+++. . .++++.+|||||||||+||+
T Consensus       330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~  409 (501)
T PRK11288        330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR  409 (501)
T ss_pred             CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence            99999996   4888999999997643221    1  12223345677899999993 3 79999999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||+.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus       410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            9999999999999999999999999999988887789999999999999965 999999999999999988764

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.3e-44  Score=389.96  Aligned_cols=216  Identities=25%  Similarity=0.373  Sum_probs=188.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|+++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+....|+.|
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            46999999999975335799999999999999999999999999999999999999999999999998877767778899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-------CC----CCCCCCChhHHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-------LE----RPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-------~~----~~~~~LSGGqkQRlsLA~A  236 (457)
                      ||+||++.+|+. |++||+.++..  ..+++    .+.++++..++.+       .|    ....+||||||||++||||
T Consensus       417 ~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa  489 (574)
T PRK11160        417 SVVSQRVHLFSA-TLRDNLLLAAP--NASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA  489 (574)
T ss_pred             eEEcccchhhcc-cHHHHhhcCCC--ccCHH----HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence            999999999875 99999987532  22333    3445555555531       12    3567799999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+++|++||||||||+||+.+++.+.+.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       490 ll~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  563 (574)
T PRK11160        490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ  563 (574)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence            999999999999999999999999999987764 58999999999999988999999999999999999999865

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=2.4e-43  Score=382.35  Aligned_cols=228  Identities=18%  Similarity=0.287  Sum_probs=188.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|+.. +.+|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....++.|
T Consensus       333 ~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i  411 (588)
T PRK13657        333 GAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI  411 (588)
T ss_pred             CeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            369999999999742 5699999999999999999999999999999999999999999999999998877767788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      +|+||++.+|+. |++||+.++.  ...++++..+..+.     .++.+  |+.. ......+||||||||++|||||++
T Consensus       412 ~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~  488 (588)
T PRK13657        412 AVVFQDAGLFNR-SIEDNIRVGR--PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK  488 (588)
T ss_pred             EEEecCcccccc-cHHHHHhcCC--CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999865 9999998752  12334433332221     22222  1211 234456799999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      +|++||||||||+||+.+.+.+++.+.... +++|||++||+.+.++.||+|++|++|++++.|+.+++..+.  +...+
T Consensus       489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~--~~y~~  565 (588)
T PRK13657        489 DPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG--GRFAA  565 (588)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC--ChHHH
Confidence            999999999999999999999999987653 589999999999999889999999999999999999997652  33444


Q ss_pred             HHH
Q psy10858        320 VFY  322 (457)
Q Consensus       320 ~f~  322 (457)
                      .+.
T Consensus       566 l~~  568 (588)
T PRK13657        566 LLR  568 (588)
T ss_pred             HHH
Confidence            443

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=7.7e-44  Score=386.35  Aligned_cols=223  Identities=22%  Similarity=0.334  Sum_probs=190.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|++. +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++...+....+++|
T Consensus       339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i  417 (592)
T PRK10790        339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV  417 (592)
T ss_pred             CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            359999999999752 5699999999999999999999999999999999999999999999999998877777788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+|+. |++||+.++.   ..++++    +.++++.+++       +.     ......+||||||||++|||
T Consensus       418 ~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~----i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR  489 (592)
T PRK10790        418 AMVQQDPVVLAD-TFLANVTLGR---DISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR  489 (592)
T ss_pred             EEEccCCccccc-hHHHHHHhCC---CCCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence            999999999987 9999998863   233333    3344444443       11     23455679999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMP  315 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~  315 (457)
                      ||+++|++||||||||+||+.+.+.+.+.++... +++|+|++||+++.+..||+|++|++|++++.|+++++.++.  +
T Consensus       490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~--~  566 (592)
T PRK10790        490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ--G  566 (592)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC--C
Confidence            9999999999999999999999999999987764 479999999999998899999999999999999999998652  3


Q ss_pred             cHHHHHH
Q psy10858        316 KLSDVFY  322 (457)
Q Consensus       316 ~l~~~f~  322 (457)
                      ...+.+.
T Consensus       567 ~y~~l~~  573 (592)
T PRK10790        567 RYWQMYQ  573 (592)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.6e-44  Score=383.43  Aligned_cols=217  Identities=21%  Similarity=0.344  Sum_probs=185.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh-hhcC
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK-TAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~-~~r~  165 (457)
                      .++|+++|+++   .    +|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...... ..++
T Consensus       266 ~~~l~~~~l~~---~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  338 (510)
T PRK15439        266 APVLTVEDLTG---E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR  338 (510)
T ss_pred             CceEEEeCCCC---C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence            45899999983   1    59999999999999999999999999999999999999999999999877543222 2346


Q ss_pred             cEEEEcCCC---CCCCCCCHHHHHHHhhh--h-cCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        166 KVGYMPQEL---AMFGELTIKETLNFFGM--I-YGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       166 ~IGyvpQ~~---~L~~~lTV~EnL~~~~~--l-~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++||+||++   .+++.+|+.+|+.....  . ........++++.++++.+++. . .++++.+|||||||||+||+||
T Consensus       339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al  418 (510)
T PRK15439        339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL  418 (510)
T ss_pred             CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence            799999985   58888999999864311  1 1112223345678889999995 4 7899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+|++|||||||+|||+.+++.++++++.++++|.|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus       419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  492 (510)
T PRK15439        419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV  492 (510)
T ss_pred             hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence            99999999999999999999999999988877779999999999999975 99999999999999999987653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=4e-44  Score=338.70  Aligned_cols=192  Identities=24%  Similarity=0.338  Sum_probs=158.9

Q ss_pred             eEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         90 DEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        90 Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ++++||+++|++..   ..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            57899999998631   2699999999999999999999999999999999999999999999987             5


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      |||+||++.++ .+|++||+.+....   ..+...+..+     +.+..+  ++. ..++.+.+||+|||||++|||||+
T Consensus        68 i~~~~q~~~l~-~~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~  143 (204)
T cd03250          68 IAYVSQEPWIQ-NGTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY  143 (204)
T ss_pred             EEEEecCchhc-cCcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence            99999999988 56999999875332   2211111111     111111  121 145678999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR  298 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk  298 (457)
                      .+|+++||||||+|||+.+++.+++. ++...++|+|||++||+++++..||++++|++|+
T Consensus       144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            99999999999999999999999985 6665556899999999999987799999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.8e-44  Score=336.53  Aligned_cols=191  Identities=21%  Similarity=0.279  Sum_probs=166.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++...    .++.++
T Consensus         1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~   73 (195)
T PRK13541          1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----AKPYCT   73 (195)
T ss_pred             CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----hhhhEE
Confidence            5789999999976  66665 9999999999999999999999999999999999999999999876432    135699


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |++|++.+++.+||.||+.+....++     ..+++.++++.+++.. .++.+.+||||||||++||+||+.+|++||||
T Consensus        74 ~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD  148 (195)
T PRK13541         74 YIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD  148 (195)
T ss_pred             eccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999988888999999987654433     1235667788888854 78899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV  291 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri  291 (457)
                      |||+|||+.+++.++++++...++|.|||++||++++++.+|-+
T Consensus       149 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~  192 (195)
T PRK13541        149 EVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL  192 (195)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence            99999999999999999876566799999999999998887765

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=9.4e-44  Score=393.36  Aligned_cols=219  Identities=24%  Similarity=0.321  Sum_probs=185.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|+.+ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....|++|
T Consensus       472 ~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  550 (708)
T TIGR01193       472 GDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI  550 (708)
T ss_pred             CcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence            369999999999742 6799999999999999999999999999999999999999999999999998777777788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+|+. |++||+.++.. ...++++..+.++.     .++.+  |++. ......+||||||||++|||||++
T Consensus       551 ~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~  628 (708)
T TIGR01193       551 NYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT  628 (708)
T ss_pred             EEEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999876 99999987532 12344433332221     11111  1111 234567899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++||||||||+||+.+.+.+++.+...  +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~  698 (708)
T TIGR01193       629 DSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR  698 (708)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence            99999999999999999999999997764  47999999999999988999999999999999999999765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=5.4e-44  Score=395.93  Aligned_cols=214  Identities=20%  Similarity=0.290  Sum_probs=182.5

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..|+++||+++|++. ++.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.+.+....+++
T Consensus       477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            469999999999752 3679999999999999999999999999999999999999999999999999887777778899


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA  234 (457)
                      |+||||++.+|. -|++||+.++..  ..++++.    .++++..++       +.     .+....+||||||||++||
T Consensus       557 i~~v~Q~~~lF~-gTIreNI~~g~~--~~~~e~i----~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA  629 (711)
T TIGR00958       557 VALVGQEPVLFS-GSVRENIAYGLT--DTPDEEI----MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA  629 (711)
T ss_pred             ceEEecCccccc-cCHHHHHhcCCC--CCCHHHH----HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence            999999999986 599999987532  2233333    333333332       11     2344568999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+++|+|||||||||+||+.+.+.+.+ ..  ..+++|+|++||+++.+..||+|++|++|+|++.|+++++.++
T Consensus       630 RALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~  703 (711)
T TIGR00958       630 RALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED  703 (711)
T ss_pred             HHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence            99999999999999999999999999988 22  2468999999999999988999999999999999999999865

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=4.3e-44  Score=393.34  Aligned_cols=214  Identities=23%  Similarity=0.361  Sum_probs=186.9

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS--QGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~--sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++|++++|++  +.+|+|||+++++||++||+|||||||||||++|+|+.+|+  +|+|.++|+++..    ..++++||
T Consensus        71 ~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~y  144 (659)
T PLN03211         71 ISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGF  144 (659)
T ss_pred             cccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEE
Confidence            4556677776  78999999999999999999999999999999999999885  8999999987642    23467999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-C-----CCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-L-----ERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~-----~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      |+|++.+++.+||+||+.+.+.++   ..+.++..++++++++.++|.+ .     ++.+++|||||||||+||+||+++
T Consensus       145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~  224 (659)
T PLN03211        145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN  224 (659)
T ss_pred             ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence            999999999999999999876543   2345556677888999999954 3     456788999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HHh-ccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EAN-DASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea~-~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+||||||||+|||+.++..++++++.++++|+|||++||+++ ++. .+|++++|++|+++..|+++++...
T Consensus       225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~  297 (659)
T PLN03211        225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY  297 (659)
T ss_pred             CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHH
Confidence            9999999999999999999999998887778999999999998 464 5999999999999999999988653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-43  Score=376.39  Aligned_cols=213  Identities=21%  Similarity=0.336  Sum_probs=186.7

Q ss_pred             cCceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         87 EEADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      .++++++|++++|+++. +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|+++|.+.          
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------   88 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------   88 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence            35899999999998632 3699999999999999999999999999999999999999999999988531          


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                         ++.+.+.+++.+|++||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus        89 ---~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LL  165 (549)
T PRK13545         89 ---LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL  165 (549)
T ss_pred             ---eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence               12223456778999999988665556666666667778899999964 68999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||||||+|||+.+++.+++.+..++++|.|||++||+++++.. ||++++|++|++++.|+++++...+
T Consensus       166 LLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~  234 (549)
T PRK13545        166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY  234 (549)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence            9999999999999999999988877779999999999999965 9999999999999999999887653

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=6.1e-44  Score=362.16  Aligned_cols=190  Identities=26%  Similarity=0.401  Sum_probs=170.0

Q ss_pred             EEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHH
Q psy10858        122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWL  201 (457)
Q Consensus       122 LlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~  201 (457)
                      |+||||||||||+|+|+|+++|++|+|+++|+++.....  .++++||+||++.+|+.+||+||+.+....++.+..+..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            689999999999999999999999999999988754322  346899999999999999999999987666666666666


Q ss_pred             HHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEc
Q psy10858        202 FQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTT  279 (457)
Q Consensus       202 ~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisT  279 (457)
                      +++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.++.+.+ .|+|||++|
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT  158 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT  158 (325)
T ss_pred             HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            77889999999965 7899999999999999999999999999999999999999999999999777654 499999999


Q ss_pred             CChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        280 QYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       280 H~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |+++++.. |||+++|++|+++..|+++++.+...
T Consensus       159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~  193 (325)
T TIGR01187       159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA  193 (325)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            99999865 99999999999999999999987643

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-44  Score=380.16  Aligned_cols=216  Identities=17%  Similarity=0.274  Sum_probs=183.2

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcC
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~  165 (457)
                      .++|+++|+++.+    +.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++..... ...++
T Consensus       248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  323 (491)
T PRK10982        248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH  323 (491)
T ss_pred             CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence            4589999999973    358999999999999999999999999999999999999999999999987754322 23356


Q ss_pred             cEEEEcCCC---CCCCCCCHHHHH-----HHhhhhcCC-CHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHH
Q psy10858        166 KVGYMPQEL---AMFGELTIKETL-----NFFGMIYGM-DESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       166 ~IGyvpQ~~---~L~~~lTV~EnL-----~~~~~l~g~-~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA  234 (457)
                      .+||+||++   .+|+++|+.+|.     .++...++. +.....+++.++++.+++. . .++++.+|||||||||+||
T Consensus       324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  403 (491)
T PRK10982        324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG  403 (491)
T ss_pred             CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence            799999985   478889887773     322222232 2334456677888899984 3 6999999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~  306 (457)
                      +||+.+|+||||||||+|||+.+++.++++++.+.++|.|||++|||++++.. |||+++|++|+++..++++
T Consensus       404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence            99999999999999999999999999999988877789999999999999965 9999999999999887764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=7.6e-44  Score=384.78  Aligned_cols=218  Identities=24%  Similarity=0.341  Sum_probs=189.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++|++++|++ ++.+|+|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.++...+....|++||
T Consensus       328 ~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~  406 (567)
T COG1132         328 SIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG  406 (567)
T ss_pred             eEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence            4999999999983 178999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH-----HhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-----SHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l-----l~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ||||++.||. -||+||+.++..-  .+++++.+.++.+     +..+  |+.. .......||||||||++||||++++
T Consensus       407 ~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         407 IVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             EEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            9999999998 6999999876432  3444544443332     2222  2211 2345568999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |++||||||||+||+.+.+.+.+.+.... +++|+|+++|.+..+..||+|++|++|+|++.|+++++..+
T Consensus       484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~  553 (567)
T COG1132         484 PPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK  553 (567)
T ss_pred             CCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence            99999999999999999999999987655 57899999999999999999999999999999999999876

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=8.6e-44  Score=339.69  Aligned_cols=199  Identities=18%  Similarity=0.286  Sum_probs=164.4

Q ss_pred             EEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhcCc
Q psy10858         91 EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAGSK  166 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r~~  166 (457)
                      .+.|+.++|+.. ..+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++....    ....++.
T Consensus         2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            578999999853 67999999999999999999999999999999999999999999999998764321    1123467


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA  234 (457)
                      +||++|++.++ ..|++||+.+....   ....    ..++++.+++.            ..++++.+|||||||||+||
T Consensus        81 i~~~~q~~~~~-~~t~~~nl~~~~~~---~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03290          81 VAYAAQKPWLL-NATVEENITFGSPF---NKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA  152 (218)
T ss_pred             EEEEcCCCccc-cccHHHHHhhcCcC---CHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence            99999999888 57999999875321   2211    12223333331            13567899999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWD--LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR  298 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~--~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk  298 (457)
                      |||+.+|++|||||||+|||+.+++.+++  +++.+++.|.|||++||+++++..||++++|++|+
T Consensus       153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            99999999999999999999999999998  66666667899999999999987799999999874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=8.7e-44  Score=341.90  Aligned_cols=201  Identities=29%  Similarity=0.467  Sum_probs=169.9

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCC--CCCHHHHHHHh
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG--ELTIKETLNFF  189 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~--~lTV~EnL~~~  189 (457)
                      |+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.     ..++++||+||++.++.  .+|+.+|+.+.
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence            578999999999999999999999999999999999999998653     23467999999987643  47999999875


Q ss_pred             hhh----cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH
Q psy10858        190 GMI----YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL  264 (457)
Q Consensus       190 ~~l----~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~  264 (457)
                      ...    .+.+.....+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.+++.++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~  155 (223)
T TIGR03771        76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL  155 (223)
T ss_pred             cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            321    11122233456788899999964 6889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        265 LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       265 i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      ++.++++|+|||++||+++++.. ||++++| +|+++..|+++++.+.   ..+.+.|
T Consensus       156 l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~---~~~~~~~  209 (223)
T TIGR03771       156 FIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP---APWMTTF  209 (223)
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh---HHHHHHh
Confidence            88777679999999999999865 9999999 8999999999988653   3455554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.1e-43  Score=326.25  Aligned_cols=160  Identities=29%  Similarity=0.432  Sum_probs=147.5

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~IG  168 (457)
                      |+++|++++|++  +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++.+|
T Consensus         1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~   78 (163)
T cd03216           1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA   78 (163)
T ss_pred             CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence            578999999987  789999999999999999999999999999999999999999999999988765332 23456899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      |+||                                                  ||||||||++|||||+.+|++|||||
T Consensus        79 ~~~q--------------------------------------------------LS~G~~qrl~laral~~~p~illlDE  108 (163)
T cd03216          79 MVYQ--------------------------------------------------LSVGERQMVEIARALARNARLLILDE  108 (163)
T ss_pred             EEEe--------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            9999                                                  99999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA  301 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~  301 (457)
                      ||+|||+.+++.++++++.+.++|.|||++||+++++.. |||+++|++|++++
T Consensus       109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999988877779999999999999865 99999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=380.16  Aligned_cols=206  Identities=19%  Similarity=0.246  Sum_probs=178.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++++|++  +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|.++|.           .++|
T Consensus         1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~   67 (530)
T PRK15064          1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG   67 (530)
T ss_pred             CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence            5899999999987  78999999999999999999999999999999999999999999999762           3599


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhh-h----------cCCC---------------------HHHHHHHHHHHHhHcCCCC-
Q psy10858        169 YMPQELAMFGELTIKETLNFFGM-I----------YGMD---------------------ESIWLFQMRKYSHVLKLPN-  215 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~-l----------~g~~---------------------~~~~~~~~~~ll~~l~L~~-  215 (457)
                      |++|++.+++.+||+||+.+... .          .+.+                     ..+..+++.++++.+++.. 
T Consensus        68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  147 (530)
T PRK15064         68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE  147 (530)
T ss_pred             EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence            99999999999999999976321 0          0100                     0122356778899999964 


Q ss_pred             -CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEE
Q psy10858        216 -LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAF  293 (457)
Q Consensus       216 -~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~i  293 (457)
                       .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++++.   +.|.|||+||||++++.. ||+|++
T Consensus       148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~  224 (530)
T PRK15064        148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMAD  224 (530)
T ss_pred             HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEE
Confidence             357899999999999999999999999999999999999999999999975   358999999999999865 999999


Q ss_pred             EeCCeE-EEecChhhhhh
Q psy10858        294 LYKGRI-IAQDSPDGFKS  310 (457)
Q Consensus       294 m~~GkI-~~~gs~~~l~~  310 (457)
                      |++|++ ++.|+++++.+
T Consensus       225 l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        225 LDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             EeCCEEEEecCCHHHHHH
Confidence            999999 47899887753

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-43  Score=374.85  Aligned_cols=217  Identities=26%  Similarity=0.383  Sum_probs=185.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|+++.|++++ ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.++|.+....+....+++++|
T Consensus       321 i~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~  399 (559)
T COG4988         321 ISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW  399 (559)
T ss_pred             eeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence            44559999999853 89999999999999999999999999999999999999999999999999888777788999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--HHhHcCCCC-CCC----CCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLKLPN-LER----PVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--ll~~l~L~~-~~~----~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ++|+|.+|.. |++||+.++..  ..+++++.+.+++  +.+.+.-+. +|.    ....|||||+|||++||||+++++
T Consensus       400 v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~  476 (559)
T COG4988         400 VSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS  476 (559)
T ss_pred             eCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999876 99999987532  1334444333322  222222211 344    444599999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++||||||++||.++.+.+.+.+..+.+ ++|+|++||++..+..+|+|++|++|++++.|+++++.++
T Consensus       477 l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~  544 (559)
T COG4988         477 LLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK  544 (559)
T ss_pred             EEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence            9999999999999999999999887654 5999999999999999999999999999999999999765

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-44  Score=326.78  Aligned_cols=218  Identities=26%  Similarity=0.368  Sum_probs=200.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--CC----chhh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SI----YHKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--~~----~~~~  162 (457)
                      .|+++|+++.||.  ..+|-||+|+-++||.+.|+||+|||||||++.|.=+.-|.+|+..+-|....  ..    ....
T Consensus         2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~   79 (242)
T COG4161           2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD   79 (242)
T ss_pred             ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence            5899999999999  89999999999999999999999999999999999999999999999876532  11    1234


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      +|+.+|+|||...|||.+||.|||.- ..+..|+++++...+..++++++.|.. +|+.|-.|||||+|||+|||||+.+
T Consensus        80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk  159 (242)
T COG4161          80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME  159 (242)
T ss_pred             HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence            68899999999999999999999854 567789999999999999999999954 8999999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |++|++||||++|||.-..++.++++.+...|.|-+++||..+.|+. +.||++|.+|+|++.|+.+.+
T Consensus       160 pqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            99999999999999999999999999998899999999999999976 999999999999999997765

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.6e-43  Score=382.20  Aligned_cols=206  Identities=26%  Similarity=0.296  Sum_probs=179.1

Q ss_pred             CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ++|+++||+++|+ +  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++           ..+
T Consensus         5 ~~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~   71 (556)
T PRK11819          5 YIYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIK   71 (556)
T ss_pred             EEEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCE
Confidence            5899999999998 6  7899999999999999999999999999999999999999999999864           146


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhh-hc-------------CCCH----------------------HHHHHHHHHHHhH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGM-IY-------------GMDE----------------------SIWLFQMRKYSHV  210 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~-l~-------------g~~~----------------------~~~~~~~~~ll~~  210 (457)
                      |||+||++.+++.+||.||+.+... ++             +...                      .+..+++.++++.
T Consensus        72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  151 (556)
T PRK11819         72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA  151 (556)
T ss_pred             EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence            9999999999999999999986421 10             1110                      0123467778889


Q ss_pred             cCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cC
Q psy10858        211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-AS  289 (457)
Q Consensus       211 l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~d  289 (457)
                      +++...++++++|||||||||+||+||+.+|++|||||||+|||+.++..++++++.+   +.|||+|||+++++.. ||
T Consensus       152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d  228 (556)
T PRK11819        152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAG  228 (556)
T ss_pred             CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcC
Confidence            9986578999999999999999999999999999999999999999999999998765   2599999999999975 99


Q ss_pred             eEEEEeCCeEE-EecChhhhh
Q psy10858        290 EVAFLYKGRII-AQDSPDGFK  309 (457)
Q Consensus       290 ri~im~~GkI~-~~gs~~~l~  309 (457)
                      +|++|++|+++ ..|+.+++.
T Consensus       229 ~i~~l~~g~i~~~~g~~~~~~  249 (556)
T PRK11819        229 WILELDRGRGIPWEGNYSSWL  249 (556)
T ss_pred             eEEEEeCCEEEEecCCHHHHH
Confidence            99999999986 778877654

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.2e-42  Score=377.55  Aligned_cols=219  Identities=21%  Similarity=0.295  Sum_probs=185.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus       333 ~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  411 (585)
T TIGR01192       333 GAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI  411 (585)
T ss_pred             CeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            369999999999752 4689999999999999999999999999999999999999999999999988766656678899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      ||+||++.+++ .|++||+.++..  ..++++..+..+.     .+..+  ++.. .++...+||||||||++|||||++
T Consensus       412 ~~v~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~  488 (585)
T TIGR01192       412 ATVFQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK  488 (585)
T ss_pred             EEEccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999986 599999987532  2234433333221     12211  2222 356678899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++|||||||||||+.+++.+++.++.. .+++|||++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       489 ~p~ililDEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  559 (585)
T TIGR01192       489 NAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK  559 (585)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence            99999999999999999999999998776 458999999999999988999999999999999999998765

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=4.7e-43  Score=387.11  Aligned_cols=220  Identities=23%  Similarity=0.305  Sum_probs=187.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|+..++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....|+.|
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i  533 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM  533 (694)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence            46999999999975436799999999999999999999999999999999999999999999999998877767778899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+|+. |++||+.++..  ..+.++..+..+     +.++.+  |++. ......+||||||||++|||||++
T Consensus       534 ~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       534 GVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             eEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999874 99999987432  233333332222     222222  2221 345567899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++||||||||+||+.+++.+++.++.. ..++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus       611 ~~~ililDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~  681 (694)
T TIGR01846       611 NPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL  681 (694)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence            99999999999999999999999998776 468999999999999988999999999999999999999865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=4.9e-43  Score=384.71  Aligned_cols=222  Identities=24%  Similarity=0.330  Sum_probs=198.2

Q ss_pred             CceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh---
Q psy10858         88 EADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---  162 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~---  162 (457)
                      ++++++|++++|+..  .+.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+++.......   
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            479999999999632  257999999999999999999999999999999999999999999999999876543222   


Q ss_pred             -hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        163 -AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       163 -~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                       .++.+||+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.. .++.+.+||||||||++|||||+.+
T Consensus        83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence             25689999999999999999999988655556555566677888999999964 7899999999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      |++|||||||+|||+.+++.++++++.++++|+|||++||+++.++.|||+++|++|++++.|++++..
T Consensus       163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence            999999999999999999999999888777799999999999998789999999999999999998774

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.5e-44  Score=350.50  Aligned_cols=224  Identities=25%  Similarity=0.411  Sum_probs=198.9

Q ss_pred             ceEEEeeEEEeCC-------------------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858         89 ADEGKNTEKEELK-------------------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW  149 (457)
Q Consensus        89 ~Iei~nlsk~yg~-------------------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~  149 (457)
                      ++.++|++|.|..                   ....||+||||+|++|+++|++|||||||||++|||+|++.|++|.|.
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~   82 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR   82 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence            5677777777742                   124599999999999999999999999999999999999999999999


Q ss_pred             EcCccCCCCchhhhcCcEEEEc-CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhH
Q psy10858        150 VLGGHPASIYHKTAGSKVGYMP-QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQ  227 (457)
Q Consensus       150 i~G~~~~~~~~~~~r~~IGyvp-Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGq  227 (457)
                      ++|.++.... +..-+++|+|+ |...++.++.+.+.+.....+|.++.++.+++.+.+.+.+++.. ++.+++.||.||
T Consensus        83 V~G~~Pf~~~-~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq  161 (325)
T COG4586          83 VNGKDPFRRR-EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ  161 (325)
T ss_pred             ecCcCcchhH-HHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence            9999886533 23345677754 77788888889999988888999999999999999999999964 889999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858        228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       228 kQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~  305 (457)
                      |.|+.||.||+|+|++|+|||||-|||..++..+.+.++.. .+.+.||+++||+++.+.. ||||++|++|+++.+|+.
T Consensus       162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l  241 (325)
T COG4586         162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL  241 (325)
T ss_pred             HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence            99999999999999999999999999999999999997665 5669999999999999865 999999999999999999


Q ss_pred             hhhhhcCC
Q psy10858        306 DGFKSKYS  313 (457)
Q Consensus       306 ~~l~~~~~  313 (457)
                      +++...|+
T Consensus       242 ~~l~~~f~  249 (325)
T COG4586         242 AQLQEQFG  249 (325)
T ss_pred             HHHHHHhC
Confidence            99987765

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.6e-43  Score=379.31  Aligned_cols=220  Identities=21%  Similarity=0.279  Sum_probs=184.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|++++++++|+..+..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus       312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  391 (569)
T PRK10789        312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL  391 (569)
T ss_pred             CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence            35999999999975436799999999999999999999999999999999999999999999999988766656678899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      +|+||++.+|+. |++||+.++..  ..++++..+..+.     .+..+  |+.. .+....+||||||||++|||||++
T Consensus       392 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~  468 (569)
T PRK10789        392 AVVSQTPFLFSD-TVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL  468 (569)
T ss_pred             EEEccCCeeccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            999999999975 99999987532  1233333322221     11111  1111 245567899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++|||||||++||+.+++.+++.++... +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  539 (569)
T PRK10789        469 NAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ  539 (569)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc
Confidence            999999999999999999999999987764 68999999999999888999999999999999999999865

>KOG0058|consensus

Probab=100.00  E-value=2.4e-43  Score=379.17  Aligned_cols=221  Identities=24%  Similarity=0.353  Sum_probs=193.6

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      -.|+.+||++.|... +..+|+|+||+|++||+++|+||||+||||+.++|-.++.|++|+|.+||.++.+.++...|++
T Consensus       464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~  543 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK  543 (716)
T ss_pred             ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence            469999999999764 3679999999999999999999999999999999999999999999999999999888889999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--H-hHcCCCC-----CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--S-HVLKLPN-----LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l-~~l~L~~-----~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ||+|-|+|.||.. ||+||+.|+..  ..+.+++...++.+  - -..++++     -+.+..+||||||||++|||||+
T Consensus       544 Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  544 IGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             eeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            9999999999975 99999998765  44555544333221  1 1223432     35677799999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      .+|.||||||.||+||..+...+-+.+....+ ++|||++.|.+..++.||+|++|++|+|++.|+.++++++.
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~  693 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP  693 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence            99999999999999999999999999987654 69999999999999999999999999999999999999864

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.8e-43  Score=374.22  Aligned_cols=215  Identities=23%  Similarity=0.310  Sum_probs=177.4

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCC-chhhhc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASI-YHKTAG  164 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~-~~~~~r  164 (457)
                      .++++++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+.++ ++|+|+++|+++... .....+
T Consensus       258 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~  335 (490)
T PRK10938        258 EPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK  335 (490)
T ss_pred             CceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence            468999999999987  7899999999999999999999999999999999999876 799999999765321 112245


Q ss_pred             CcEEEEcCCCCCCCC--CCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHH
Q psy10858        165 SKVGYMPQELAMFGE--LTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~--lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      +++||++|++.++..  .++.+++.+...    .++.......+++.++++.+++..  .++++.+|||||||||+||+|
T Consensus       336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  415 (490)
T PRK10938        336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA  415 (490)
T ss_pred             hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence            689999999866443  567766643211    111112233456788999999953  688999999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHh-c-cCeEEEEeCCeEEEec
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG-RTVIMTTQYIEEAN-D-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g-~TIIisTH~~~ea~-~-~dri~im~~GkI~~~g  303 (457)
                      |+.+|++|||||||+|||+.+++.++++++.++++| .|||++|||++++. . ||++++|++|++++.-
T Consensus       416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            999999999999999999999999999988876665 57999999999995 3 7999999999987654

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=8.5e-43  Score=375.71  Aligned_cols=217  Identities=23%  Similarity=0.332  Sum_probs=184.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++||+++|.+.++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....++.+
T Consensus       329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i  408 (571)
T TIGR02203       329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV  408 (571)
T ss_pred             CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence            35999999999965446799999999999999999999999999999999999999999999999988776666778899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-CC----CCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-LE----RPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-~~----~~~~~LSGGqkQRlsLA~  235 (457)
                      +|+||++.+|+. |++|||.++.. ...++++    +.++++.+++       +. +|    .....||||||||++|||
T Consensus       409 ~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~----i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR  482 (571)
T TIGR02203       409 ALVSQDVVLFND-TIANNIAYGRT-EQADRAE----IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR  482 (571)
T ss_pred             eEEccCcccccc-cHHHHHhcCCC-CCCCHHH----HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence            999999999865 99999986531 1233333    3333444333       11 22    334579999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |++.+|++||||||||+||+.+.+.+++.+... .+++|+|++||+.+.+..||+|++|++|++++.|+.+++.++
T Consensus       483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~  557 (571)
T TIGR02203       483 ALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR  557 (571)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence            999999999999999999999999999998775 357999999999998888999999999999999999998764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=7.5e-43  Score=376.53  Aligned_cols=207  Identities=26%  Similarity=0.290  Sum_probs=177.5

Q ss_pred             CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .+++++|++++|+ +  +++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++           +..
T Consensus         3 ~~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~   69 (552)
T TIGR03719         3 YIYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIK   69 (552)
T ss_pred             EEEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCE
Confidence            4799999999998 5  7899999999999999999999999999999999999999999999864           146


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh--------------cCCCHHH----------------------HHHHHHHHHhH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI--------------YGMDESI----------------------WLFQMRKYSHV  210 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l--------------~g~~~~~----------------------~~~~~~~ll~~  210 (457)
                      |||+||++.+++++||.||+.+....              ++.+..+                      ...++.++++.
T Consensus        70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (552)
T TIGR03719        70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA  149 (552)
T ss_pred             EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence            99999999999999999999874221              0111111                      12455667788


Q ss_pred             cCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cC
Q psy10858        211 LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-AS  289 (457)
Q Consensus       211 l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~d  289 (457)
                      ++++..++++++|||||||||+||+||+.+|++|||||||++||+.++..+.++++..   +.|||+|||+++++.. ||
T Consensus       150 ~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d  226 (552)
T TIGR03719       150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAG  226 (552)
T ss_pred             CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcC
Confidence            8885568899999999999999999999999999999999999999999999997654   3599999999999975 99


Q ss_pred             eEEEEeCCeEE-EecChhhhhh
Q psy10858        290 EVAFLYKGRII-AQDSPDGFKS  310 (457)
Q Consensus       290 ri~im~~GkI~-~~gs~~~l~~  310 (457)
                      ++++|++|+++ ..|+.+++.+
T Consensus       227 ~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       227 WILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             eEEEEECCEEEEecCCHHHHHH
Confidence            99999999976 7788877544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-43  Score=375.91  Aligned_cols=203  Identities=22%  Similarity=0.309  Sum_probs=178.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|++  +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.           +++
T Consensus       318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i  384 (530)
T PRK15064        318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI  384 (530)
T ss_pred             ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence            58999999999987  78999999999999999999999999999999999999999999998762           469


Q ss_pred             EEEcCCCC--CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        168 GYMPQELA--MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       168 GyvpQ~~~--L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ||+||++.  +++.+|+.+|+.++..   ..  ...+++.++++.+++. . .++++.+|||||||||+||+||+.+|++
T Consensus       385 ~~~~q~~~~~~~~~~t~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l  459 (530)
T PRK15064        385 GYYAQDHAYDFENDLTLFDWMSQWRQ---EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV  459 (530)
T ss_pred             EEEcccccccCCCCCcHHHHHHHhcc---CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE
Confidence            99999974  5667999999865321   11  1234567889999984 3 6899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhhhc
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFKSK  311 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~~~  311 (457)
                      |||||||+|||+.+++.++++++..   +.|||++|||++++.. |||+++|++|+++ ..|+++++.+.
T Consensus       460 llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        460 LVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            9999999999999999999998765   3599999999999975 9999999999998 88988887654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=8.9e-43  Score=376.19  Aligned_cols=216  Identities=21%  Similarity=0.329  Sum_probs=183.5

Q ss_pred             CceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..|+++|++++|.... +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+....++.
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            3699999999997422 579999999999999999999999999999999999999999999999998876666667789


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-----------CC-CCCCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-----------PN-LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-----------~~-~~~~~~~LSGGqkQRlsLA  234 (457)
                      +||+||++.+|+. |++||+.++..  ..++++    +.++++..++           .. ......+||||||||++||
T Consensus       416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~~----~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la  488 (576)
T TIGR02204       416 MALVPQDPVLFAA-SVMENIRYGRP--DATDEE----VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA  488 (576)
T ss_pred             ceEEccCCccccc-cHHHHHhcCCC--CCCHHH----HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence            9999999999865 99999987431  122333    3333333332           11 2345667999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||++++|++||||||||+||+.+++.+++.++... +++|+|++||+++.+..+|||++|++|++++.|+++++.++
T Consensus       489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~  564 (576)
T TIGR02204       489 RAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK  564 (576)
T ss_pred             HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence            99999999999999999999999999999987764 58999999999999888999999999999999999998764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=2.8e-42  Score=343.95  Aligned_cols=205  Identities=24%  Similarity=0.284  Sum_probs=168.1

Q ss_pred             cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      +....|+++|+++.  +  +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|            
T Consensus        35 ~~~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------   98 (282)
T cd03291          35 SDDNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------   98 (282)
T ss_pred             CCCCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence            45578999999985  3  5699999999999999999999999999999999999999999999976            


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHcCCC---CCCCCCCCCChhHHHHHHHHHH
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVLKLP---NLERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l~L~---~~~~~~~~LSGGqkQRlsLA~A  236 (457)
                       +|+|++|++.+++. ||+||+.+....   ........     +...++.+...   ..++.+.+|||||||||+||+|
T Consensus        99 -~i~yv~q~~~l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAra  173 (282)
T cd03291          99 -RISFSSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARA  173 (282)
T ss_pred             -EEEEEeCccccccc-CHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHH
Confidence             39999999988875 999999864321   11111111     11122221110   1245578999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+.+|++|||||||+|||+.+++.+++. ++.+. ++.|||++||+++++..||++++|++|+++..|+++++.+.
T Consensus       174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  248 (282)
T cd03291         174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL  248 (282)
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999999986 55543 57999999999999877999999999999999999988754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.3e-42  Score=320.03  Aligned_cols=164  Identities=28%  Similarity=0.368  Sum_probs=147.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|++++|+++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ++++|
T Consensus         1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~   68 (166)
T cd03223           1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF   68 (166)
T ss_pred             CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence            4789999999642 57999999999999999999999999999999999999999999999762           57999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      ++|++.++ .+|+.||+.+.                             .+.+||||||||++|||||+.+|++||||||
T Consensus        69 ~~q~~~~~-~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP  118 (166)
T cd03223          69 LPQRPYLP-LGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA  118 (166)
T ss_pred             ECCCCccc-cccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            99998875 57999999652                             3678999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR  298 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk  298 (457)
                      |+|||+.+++.++++++..   +.|||++||+++.+..||++++|++|-
T Consensus       119 t~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223         119 TSALDEESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             ccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            9999999999999997764   689999999998776799999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=340.15  Aligned_cols=198  Identities=25%  Similarity=0.331  Sum_probs=177.4

Q ss_pred             CceEEEeeEEEeCCCC-------ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch
Q psy10858         88 EADEGKNTEKEELKPS-------NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~-------~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~  160 (457)
                      ++++++||+|.|..+.       ..||+||||+|++||++||+|.||||||||-|+|+|+++|++|+|+++|+++.... 
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-   81 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-   81 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence            5899999999996431       37999999999999999999999999999999999999999999999998764321 


Q ss_pred             hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                                                          .++..+++.++++.++++.  +++++++|||||+||++|||||+
T Consensus        82 ------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa  125 (268)
T COG4608          82 ------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA  125 (268)
T ss_pred             ------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence                                                3445677889999999953  79999999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCccc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPK  316 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~  316 (457)
                      .+|+++++|||+|+||...+.++.+++..+++ .|.|.+++|||+..++. ||||++|..|+|++.|+.++++....+++
T Consensus       126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY  205 (268)
T COG4608         126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY  205 (268)
T ss_pred             hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence            99999999999999999999999999776654 59999999999999986 99999999999999999999998877776


Q ss_pred             HHHHHH
Q psy10858        317 LSDVFY  322 (457)
Q Consensus       317 l~~~f~  322 (457)
                      ...+..
T Consensus       206 Tk~Ll~  211 (268)
T COG4608         206 TKALLS  211 (268)
T ss_pred             HHHHHH
Confidence            666554

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.3e-42  Score=371.03  Aligned_cols=206  Identities=19%  Similarity=0.261  Sum_probs=177.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++++++|++++|++  +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++++ +          .+
T Consensus       322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~  388 (556)
T PRK11819        322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK  388 (556)
T ss_pred             CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence            358999999999987  7899999999999999999999999999999999999999999999832 2          15


Q ss_pred             EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |||+||++ .+++.+||.||+.+.....+.....  .....+++.+++. . .++++.+|||||||||+||+||+.+|++
T Consensus       389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  466 (556)
T PRK11819        389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE--IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV  466 (556)
T ss_pred             EEEEeCchhhcCCCCCHHHHHHhhcccccccccH--HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999997 7888999999998765433332211  2344678899995 3 5899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC-CeEE-EecChhhhhh
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK-GRII-AQDSPDGFKS  310 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~-GkI~-~~gs~~~l~~  310 (457)
                      |||||||+|||+.+++.+++++..+  .| |||++|||++++.. |||+++|++ |++. ..|+.+++.+
T Consensus       467 llLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~  533 (556)
T PRK11819        467 LLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE  533 (556)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence            9999999999999999999998775  24 89999999999975 999999986 7876 5777776654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-43  Score=366.38  Aligned_cols=215  Identities=26%  Similarity=0.410  Sum_probs=189.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .++++||+++|.+++.+||+|+||++++||-++|+|++|||||||+++|+|.++|++|+|.++|.++...+....+..++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~  415 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS  415 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence            89999999999986667999999999999999999999999999999999999999999999999988776666788999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------------CCCCCCCCChhHHHHHHHHHH
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------------LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------------~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      +++|...+|.. |+++||.+...  ..+++    .+.+++++++|.+            .+.-...||||||||++|||+
T Consensus       416 vl~Qr~hlF~~-Tlr~NL~lA~~--~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~  488 (573)
T COG4987         416 VLTQRVHLFSG-TLRDNLRLANP--DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA  488 (573)
T ss_pred             hhccchHHHHH-HHHHHHhhcCC--CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence            99999999976 99999976432  22333    3445555555531            245567899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+++.+++||||||.||||.+.+++++.+.... +|+|+|++||++..++.+|||++|++|+++++|+++++..+
T Consensus       489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~  562 (573)
T COG4987         489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN  562 (573)
T ss_pred             HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence            999999999999999999999999999977643 59999999999999999999999999999999999999864

>KOG0057|consensus

Probab=100.00  E-value=3.3e-42  Score=360.34  Aligned_cols=213  Identities=21%  Similarity=0.329  Sum_probs=186.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|+.+ +++|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|+++|.++.+...+..|+-|
T Consensus       350 ~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I  427 (591)
T KOG0057|consen  350 GSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI  427 (591)
T ss_pred             CcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence            459999999999972 459999999999999999999999999999999999999 999999999999888778889999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-------C-----CCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-------N-----LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-------~-----~~~~~~~LSGGqkQRlsLA~  235 (457)
                      |||||+..||++ ||.+|+.|+..  ..+.++    +.++.+..++.       +     ...+...|||||||||++||
T Consensus       428 g~VPQd~~LFnd-TIl~NI~YGn~--sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR  500 (591)
T KOG0057|consen  428 GVVPQDSVLFND-TILYNIKYGNP--SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR  500 (591)
T ss_pred             eEeCCcccccch-hHHHHhhcCCC--CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence            999999999987 99999987532  123333    33334444442       1     24567789999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |++.+|+|+++|||||.||..+.+.+++.+.. ...|+|+|++-|+++.+..||+|++|++|++...|+.++++.
T Consensus       501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  501 AFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             HHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence            99999999999999999999999999999766 356999999999999999999999999999999999999987

>KOG0055|consensus

Probab=100.00  E-value=1.8e-42  Score=389.72  Aligned_cols=222  Identities=24%  Similarity=0.354  Sum_probs=187.6

Q ss_pred             cCceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         87 EEADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      .-.|+++||+++|...+ ..+|+|+||.|++|+.++|+|||||||||++++|.+++.|++|+|+++|.++...+....|+
T Consensus       348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~  427 (1228)
T KOG0055|consen  348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS  427 (1228)
T ss_pred             ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence            35799999999998642 57999999999999999999999999999999999999999999999999998887788899


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--H-HhHcCCCC-----CCCCCCCCChhHHHHHHHHHHh
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--Y-SHVLKLPN-----LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--l-l~~l~L~~-----~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      +||.|.|+|.||. .|++||+.|+..  +.+.+++.+..+.  + .-...|+.     .....-+||||||||++|||||
T Consensus       428 ~iglV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal  504 (1228)
T KOG0055|consen  428 QIGLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL  504 (1228)
T ss_pred             hcCeeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence            9999999998875 699999987531  1122333222211  1 11112221     2344456999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      +.+|+|||||||||+||+.+++.+.+.++.. ..|+|-|+++|++..++.+|+|++|++|+|++.|+++||....
T Consensus       505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~  578 (1228)
T KOG0055|consen  505 VRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG  578 (1228)
T ss_pred             HhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence            9999999999999999999999999999886 4689999999999999999999999999999999999998764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-41  Score=345.53  Aligned_cols=234  Identities=19%  Similarity=0.229  Sum_probs=208.2

Q ss_pred             cccCceEEEeeEEEeCCC---------CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858         85 EEEEADEGKNTEKEELKP---------SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP  155 (457)
Q Consensus        85 ~~~~~Iei~nlsk~yg~~---------~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~  155 (457)
                      ...+.++++++...|.-+         ...||++|||++++||-+||+|.||||||||=.+|.++++++ |+|++.|+++
T Consensus       272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i  350 (534)
T COG4172         272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI  350 (534)
T ss_pred             CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence            456789999999998421         267999999999999999999999999999999999999876 9999999998


Q ss_pred             CCCch---hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhcC--CCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChh
Q psy10858        156 ASIYH---KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIYG--MDESIWLFQMRKYSHVLKLPN--LERPVKYLSGG  226 (457)
Q Consensus       156 ~~~~~---~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g--~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGG  226 (457)
                      ...+.   ...|+++-.|||+|  +|.|.|||.+.+.-+...++  .+..+..+++.++++.+||+.  .+++|+++|||
T Consensus       351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG  430 (534)
T COG4172         351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG  430 (534)
T ss_pred             cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence            75443   34578999999999  68999999999988877764  677888899999999999964  79999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858        227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       227 qkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs  304 (457)
                      ||||++|||||+.+|++++||||||+||...+.++.++++.+. +.|.+-+++|||+..++. ||+|++|++|+|++.|+
T Consensus       431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~  510 (534)
T COG4172         431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP  510 (534)
T ss_pred             hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence            9999999999999999999999999999999999999977664 569999999999999986 99999999999999999


Q ss_pred             hhhhhhcCCcccHHH
Q psy10858        305 PDGFKSKYSMPKLSD  319 (457)
Q Consensus       305 ~~~l~~~~~~~~l~~  319 (457)
                      .+++++.+..++...
T Consensus       511 ~~~if~~P~~~YT~~  525 (534)
T COG4172         511 TEAVFANPQHEYTRA  525 (534)
T ss_pred             HHHHhcCCCcHHHHH
Confidence            999998876555444

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=7.3e-42  Score=368.87  Aligned_cols=205  Identities=19%  Similarity=0.252  Sum_probs=175.6

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++++++|++++|++  +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++++ +          .+
T Consensus       320 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~  386 (552)
T TIGR03719       320 DKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VK  386 (552)
T ss_pred             CeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eE
Confidence            358999999999987  7899999999999999999999999999999999999999999999833 2          15


Q ss_pred             EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |||+||++ .+++.+||.||+.+....++....  ..+...+++.+++. . .++++.+|||||||||+||+||+.+|++
T Consensus       387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l  464 (552)
T TIGR03719       387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV  464 (552)
T ss_pred             EEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence            99999997 488889999999876543333221  12345678899995 3 5899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC-CeEE-EecChhhhh
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK-GRII-AQDSPDGFK  309 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~-GkI~-~~gs~~~l~  309 (457)
                      |||||||+|||+.+++.++++++.+  .| |||++|||++++.. |||+++|++ |++. ..|+.++++
T Consensus       465 llLDEPt~~LD~~~~~~l~~~l~~~--~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~  530 (552)
T TIGR03719       465 LLLDEPTNDLDVETLRALEEALLEF--AG-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE  530 (552)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHC--CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence            9999999999999999999998775  24 89999999999975 999999986 5876 567765544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=8.4e-43  Score=326.07  Aligned_cols=229  Identities=24%  Similarity=0.346  Sum_probs=202.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC-ccCCCCc-hhhhcC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG-GHPASIY-HKTAGS  165 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G-~~~~~~~-~~~~r~  165 (457)
                      ++++++|++.+|++  +.||+++||+|.+||.-+|+|||||||||+|..|+|..+|+.|+++++| .++...+ ....|.
T Consensus         4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~   81 (249)
T COG4674           4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA   81 (249)
T ss_pred             ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence            67999999999999  9999999999999999999999999999999999999999999999999 6666543 345677


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhh--------hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHH
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFG--------MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~--------~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      .||--||.|..|..+||+|||.+..        .++.....+.+.++++++...+|.. .++.+..||-||||++.|++-
T Consensus        82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl  161 (249)
T COG4674          82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML  161 (249)
T ss_pred             ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence            8999999999999999999998743        2333233455678999999999954 789999999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMP  315 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~  315 (457)
                      ++++|++|+||||++||--....+.-++++.++ .+.+|+++.|||++++. +++|-+|+.|.|+++|+.+++.+.   +
T Consensus       162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d---p  237 (249)
T COG4674         162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND---P  237 (249)
T ss_pred             eccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC---c
Confidence            999999999999999999999999999988864 57899999999999976 999999999999999999998765   4


Q ss_pred             cHHHHHH
Q psy10858        316 KLSDVFY  322 (457)
Q Consensus       316 ~l~~~f~  322 (457)
                      .+.++|+
T Consensus       238 ~ViEvYL  244 (249)
T COG4674         238 KVIEVYL  244 (249)
T ss_pred             ceEeeec
Confidence            4555554

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=8.7e-42  Score=326.55  Aligned_cols=189  Identities=23%  Similarity=0.289  Sum_probs=159.0

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-EcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-VLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|...          .+|   +.+.+++.+|+.
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----------~~~---~~~~l~~~ltv~   67 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----------PLG---ANSFILPGLTGE   67 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----------ccc---cccccCCcCcHH
Confidence            479999999999999999999999999999999999999999997 655321          122   456788999999


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW  262 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~  262 (457)
                      ||+.++...++.+.++...   .+.+.++++. .++++++||||||||++||+||+++|+++||||||+++|+.+++.++
T Consensus        68 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~  144 (213)
T PRK15177         68 ENARMMASLYGLDGDEFSH---FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQ  144 (213)
T ss_pred             HHHHHHHHHcCCCHHHHHH---HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence            9999987777665443332   2334556643 68899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        263 DLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       263 ~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +.+....+ +.|+|++||+++++. .||++++|++|++++.++.++..+
T Consensus       145 ~~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  192 (213)
T PRK15177        145 AALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA  192 (213)
T ss_pred             HHHHHHhh-CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence            98543323 468999999999996 499999999999999999887753

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9e-43  Score=340.45  Aligned_cols=209  Identities=22%  Similarity=0.358  Sum_probs=181.5

Q ss_pred             eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhhcCcEEE
Q psy10858         94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTAGSKVGY  169 (457)
Q Consensus        94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~r~~IGy  169 (457)
                      |+.+++|+   .+| +++|+.+.--+++|.|+||||||||+|||+|+.+|++|.|.++|.-......    ..-+++|||
T Consensus         5 ~~~~~lG~---~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGY   80 (352)
T COG4148           5 NFRQRLGN---FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY   80 (352)
T ss_pred             ehhhhcCc---eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeee
Confidence            45556665   334 5899999878999999999999999999999999999999999976543221    123688999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      |||+-.||+++||+.||.|+.+..      .....+++.+.+|+.+ ++++|.+|||||||||+|+|||+..|++|+|||
T Consensus        81 VFQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE  154 (352)
T COG4148          81 VFQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE  154 (352)
T ss_pred             EeeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence            999999999999999999865432      2344677888999976 799999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |.++||..-+++++-+++.++++ ..-|+.|||.++|+.+ ||+|++|++||+.+.|..+++.+..
T Consensus       155 PLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         155 PLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             chhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence            99999999999999999888765 8899999999999876 9999999999999999999988754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=9.7e-42  Score=333.57  Aligned_cols=188  Identities=22%  Similarity=0.330  Sum_probs=157.1

Q ss_pred             eEeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858        106 VLNNCSLVVK-----RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       106 aL~~vs~~I~-----~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      .+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.++|.            +|+|+||++.++..+
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~   76 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEG   76 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCC
Confidence            4556666665     79999999999999999999999999999999999773            599999999877889


Q ss_pred             CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHH
Q psy10858        181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRK  259 (457)
Q Consensus       181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~  259 (457)
                      ||.|++.+.....+..    .....++++.+++.. .++++.+|||||||||+||+||+.+|+++||||||++||+.++.
T Consensus        77 tv~e~l~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~  152 (246)
T cd03237          77 TVRDLLSSITKDFYTH----PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL  152 (246)
T ss_pred             CHHHHHHHHhhhcccc----HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            9999997643322211    123566788889854 68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEE--EecChhhhh
Q psy10858        260 RMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRII--AQDSPDGFK  309 (457)
Q Consensus       260 ~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~--~~gs~~~l~  309 (457)
                      .++++++.+.+ .|+|||++||+++++.. ||++++|+++..+  ..++|..+.
T Consensus       153 ~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  206 (246)
T cd03237         153 MASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR  206 (246)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence            99999877654 48999999999999975 9999999765433  455666654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.4e-41  Score=399.38  Aligned_cols=214  Identities=19%  Similarity=0.266  Sum_probs=186.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||+++|..+...+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+....|++|+
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence            69999999999653357999999999999999999999999999999999999999999999999998877777899999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C----C-CCCCCCCCChhHHHHHHHHHH
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P----N-LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~----~-~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      ||||++.+|+. |++|||.++.   ..+++++.+    +++..++       +    . ......+||||||||++||||
T Consensus      1314 iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~----al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232       1314 IIPQSPVLFSG-TVRFNIDPFS---EHNDADLWE----ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred             EECCCCeeeCc-cHHHHcCCCC---CCCHHHHHH----HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence            99999999976 9999997643   234444333    3333332       1    1 234556899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+++|+|||||||||+||+.+.+.|.+.++.. .+++|||+++|+++.+..||||++|++|+|++.|+|++++++
T Consensus      1386 LLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232       1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREE-FKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred             HHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999998775 358999999999999999999999999999999999999875

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=9.3e-42  Score=372.72  Aligned_cols=204  Identities=26%  Similarity=0.380  Sum_probs=182.6

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      +.+|+|+|++|++||+++|+|||||||||||++|+|..++.   +|+|.++|.++..   ...++.+||++|++.+++.+
T Consensus        38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~---~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH---HHHhhhceeeccccccCccC
Confidence            78999999999999999999999999999999999999885   8999999987642   34567899999999999999


Q ss_pred             CHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCC------CCChhHHHHHHHHHHhhcCCceEEEeCCC
Q psy10858        181 TIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVK------YLSGGQKRRLSFTIAILHKPQLIILDEPC  250 (457)
Q Consensus       181 TV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~------~LSGGqkQRlsLA~ALl~~P~lLILDEPT  250 (457)
                      ||+|||.|.+.+.   +++.++..++++++++.++|.+ .|+.++      .|||||||||+||+||+.+|++|+|||||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt  194 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT  194 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence            9999999987654   3455666778999999999964 677765      59999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HH-hccCeEEEEeCCeEEEecChhhhhh
Q psy10858        251 VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EA-NDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       251 sGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea-~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||+.++..+++.++.++++|+|||++||++. ++ +.+|++++|++|+++..|+++++.+
T Consensus       195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~  256 (617)
T TIGR00955       195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP  256 (617)
T ss_pred             cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence            999999999999998887777999999999996 55 5699999999999999999998854

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-42  Score=330.33  Aligned_cols=217  Identities=26%  Similarity=0.375  Sum_probs=187.8

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhc
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAG  164 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r  164 (457)
                      .+++|+++|++.+|++  +++|+|||++|++||-.+|+||||||||||+++++|..+|++|.+.++|+.....+. .+.|
T Consensus        28 ~~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr  105 (257)
T COG1119          28 NEPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR  105 (257)
T ss_pred             CcceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence            4578999999999999  999999999999999999999999999999999999999999999999998876544 6789


Q ss_pred             CcEEEEcCCC--CCCCCCCHHHHHH--Hhhhh--cC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHH
Q psy10858        165 SKVGYMPQEL--AMFGELTIKETLN--FFGMI--YG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       165 ~~IGyvpQ~~--~L~~~lTV~EnL~--~~~~l--~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      ++||||.-+.  .+..+.+|+|-+.  +++.+  +. ...+...+++..+++.+++.+ ++++..+||-||||||.||||
T Consensus       106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRA  185 (257)
T COG1119         106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA  185 (257)
T ss_pred             HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHH
Confidence            9999998543  3455677887663  22221  22 223456677888999999975 799999999999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK--GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~--g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs  304 (457)
                      |+++|++|||||||+|||..+|..+.+.+..+...  +.++|+|||+.+|+.. .++++++++|++++.|.
T Consensus       186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            99999999999999999999999999997776544  8899999999999977 59999999999998874

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.9e-43  Score=319.10  Aligned_cols=205  Identities=25%  Similarity=0.355  Sum_probs=183.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++++...-++  ..+|+|+||+|.+||..+|.||||||||||+|+++-+++|++|++++.|+++...+.+..|.+|+|
T Consensus         4 le~kq~~y~a~~--a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY   81 (223)
T COG4619           4 LELKQVGYLAGD--AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY   81 (223)
T ss_pred             hHHHHHHhhcCC--CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence            455555555555  889999999999999999999999999999999999999999999999999988888889999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |-|.+.||++ ||++|+.|..+++....  ...+...+++++++++  +++.+.+||||||||++|+|-|..-|+||+||
T Consensus        82 ~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD  158 (223)
T COG4619          82 CAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD  158 (223)
T ss_pred             HHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence            9999999987 99999999887765332  2445667889999975  79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCChhHH-hccCeEEEEeCCeE
Q psy10858        248 EPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRI  299 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i-~~~~~~g~TIIisTH~~~ea-~~~dri~im~~GkI  299 (457)
                      ||||+||+.+++.+-+++ +..+++.++|+.+|||-+++ +.+|+++-+..|++
T Consensus       159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            999999999999999994 55568899999999999997 55999999999876

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.4e-41  Score=367.52  Aligned_cols=196  Identities=21%  Similarity=0.232  Sum_probs=173.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++++++|++++|++  + .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++             .+
T Consensus       338 ~~~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~  401 (590)
T PRK13409        338 ETLVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LK  401 (590)
T ss_pred             ceEEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------ee
Confidence            468999999999986  4 4999999999999999999999999999999999999999999874             15


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+||++.+++.+||+||+.+....++  .   ...+.++++.+++.. .++++.+|||||||||+||+||+.+|++||
T Consensus       402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL  476 (590)
T PRK13409        402 ISYKPQYIKPDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL  476 (590)
T ss_pred             EEEecccccCCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999988889999999987532222  1   124567889999964 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecC
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs  304 (457)
                      |||||+|||+.++..++++++.+.+ .|+|||++|||++++.. |||+++|+ |++...|+
T Consensus       477 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        477 LDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence            9999999999999999999887755 48999999999999975 99999995 58877776

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=1.7e-41  Score=363.21  Aligned_cols=198  Identities=26%  Similarity=0.334  Sum_probs=169.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++|++++|++.++.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++...+....++++|
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~  399 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA  399 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence            69999999999764357999999999999999999999999999999999999999999999999988776677789999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHHHH
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      |+||++.+|+ .|++||+.++..  ..++++    +.++++..++.            .......+||||||||++||||
T Consensus       400 ~v~Q~~~lf~-~ti~~Ni~~~~~--~~~~~~----i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa  472 (529)
T TIGR02857       400 WVPQHPFLFA-GTIAENIRLARP--DASDAE----IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA  472 (529)
T ss_pred             EEcCCCcccC-cCHHHHHhccCC--CCCHHH----HHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence            9999999986 599999987532  123333    33333333331            1234567899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      |+++|++||||||||+||+.+.+.+++.+.... +++|+|++||+++.+..||+|++|
T Consensus       473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence            999999999999999999999999999987753 689999999999999889999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.9e-41  Score=399.06  Aligned_cols=215  Identities=20%  Similarity=0.294  Sum_probs=187.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|..+...||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+....|++|
T Consensus      1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence            36999999999975334799999999999999999999999999999999999999999999999999887777889999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-CC----CCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-NL----ERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-~~----~~~~~~LSGGqkQRlsLA~  235 (457)
                      |||||++.||.. |++|||.++.   ..+++++.    ++++..++       + .+    .....+||||||||++|||
T Consensus      1316 siVpQdp~LF~G-TIreNLd~~~---~~tdeei~----~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130       1316 GIIPQAPVLFSG-TVRFNLDPFN---EHNDADLW----ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387 (1622)
T ss_pred             EEECCCCccccc-cHHHHhCcCC---CCCHHHHH----HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHH
Confidence            999999999976 9999997653   23344433    33333322       1 12    3455689999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|+|||||||||+||+.+.+.|.+.++... +++|||+++|+++.+..||||++|++|+|++.|+|++++++
T Consensus      1388 ALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130       1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred             HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999987753 58999999999999999999999999999999999999865

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=4e-41  Score=362.47  Aligned_cols=204  Identities=21%  Similarity=0.277  Sum_probs=173.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|++. ..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+....++++
T Consensus       321 ~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  399 (547)
T PRK10522        321 QTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF  399 (547)
T ss_pred             ceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence            369999999999742 5699999999999999999999999999999999999999999999999998766666678899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CC---C--CCCCCChhHHHHHHHHHHhhcCC
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LE---R--PVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~---~--~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +|+||++.+|+. |+++|   .   .    ....+.+.++++.+++.. .+   .  ...+||||||||++|||||+++|
T Consensus       400 ~~v~q~~~lf~~-ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~  468 (547)
T PRK10522        400 SAVFTDFHLFDQ-LLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER  468 (547)
T ss_pred             EEEecChhHHHH-hhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            999999998865 78877   1   1    112334566677777743 21   1  14589999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD  303 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g  303 (457)
                      ++||||||||+||+.+++.+++.+.. .++.|+|||++||+++.+..||+|++|++|++++..
T Consensus       469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence            99999999999999999999998654 344589999999999888889999999999998763

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=6e-41  Score=393.38  Aligned_cols=214  Identities=25%  Similarity=0.340  Sum_probs=190.0

Q ss_pred             ceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCccCCCCchhhh
Q psy10858         89 ADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN---ISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~---p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      +++++||+++|+.  +++.+|+|||++|++||++||+|||||||||||++|+|+.+   |++|+|+++|+++..    ..
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~  834 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SF  834 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hh
Confidence            5899999999952  23689999999999999999999999999999999999997   789999999988742    34


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCC----CCChhHHHHHHHHH
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVK----YLSGGQKRRLSFTI  235 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~----~LSGGqkQRlsLA~  235 (457)
                      ++.+||++|++.+++.+||+|||.+.+.++   +.++++..++++++++.++|.+ +|+.++    .|||||||||+||+
T Consensus       835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~  914 (1394)
T TIGR00956       835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV  914 (1394)
T ss_pred             hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence            678999999999999999999999987664   2455566678899999999965 677776    79999999999999


Q ss_pred             HhhcCCc-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH--hccCeEEEEeCC-eEEEecChh
Q psy10858        236 AILHKPQ-LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA--NDASEVAFLYKG-RIIAQDSPD  306 (457)
Q Consensus       236 ALl~~P~-lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea--~~~dri~im~~G-kI~~~gs~~  306 (457)
                      ||+.+|+ ||||||||+|||+.++..++++++.++++|+|||+|||+++..  +.+|++++|++| ++++.|++.
T Consensus       915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence            9999997 9999999999999999999999888877899999999999864  459999999997 999999874

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=4.1e-41  Score=363.23  Aligned_cols=205  Identities=21%  Similarity=0.314  Sum_probs=174.5

Q ss_pred             CceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         88 EADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      ..|+++|++++|++.   +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~  415 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR  415 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            469999999999752   13699999999999999999999999999999999999999999999999998776656677


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CC------CCCCCCChhHHHHHHHHHHh
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LE------RPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~------~~~~~LSGGqkQRlsLA~AL  237 (457)
                      +.++|++|++.+|.. |+++|..         ++...+++.++++.+++.. .+      ....+||||||||++|||||
T Consensus       416 ~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal  485 (555)
T TIGR01194       416 DLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW  485 (555)
T ss_pred             hhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence            899999999999875 7888841         1122344666777777742 22      22467999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEe
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ  302 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~  302 (457)
                      +.+|++|||||||++||+.+++.+++. ++..+.+|+|+|++||+++.++.||+|++|++|++++.
T Consensus       486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999886 44455568999999999998888999999999999865

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=3.6e-41  Score=396.18  Aligned_cols=219  Identities=18%  Similarity=0.282  Sum_probs=184.8

Q ss_pred             ceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC------------------------
Q psy10858         89 ADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI------------------------  143 (457)
Q Consensus        89 ~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p------------------------  143 (457)
                      .|+++||+++|.+. +..||+|+||+|++|+.+||+||||||||||+++|.|+++|                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            59999999999642 25799999999999999999999999999999999999998                        


Q ss_pred             ------------------------------CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858        144 ------------------------------SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY  193 (457)
Q Consensus       144 ------------------------------~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~  193 (457)
                                                    ++|+|+++|.++...+....|+.||||||++.||+ .|++|||.|+..  
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-- 1321 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-- 1321 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--
Confidence                                          69999999999988777788999999999999985 699999998632  


Q ss_pred             CCCHHHHHHHHHHH--Hh-HcCCCC-CC----CCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858        194 GMDESIWLFQMRKY--SH-VLKLPN-LE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL  265 (457)
Q Consensus       194 g~~~~~~~~~~~~l--l~-~l~L~~-~~----~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i  265 (457)
                      ..+.+++.+.++.+  .+ ...||. .|    ....+||||||||++|||||+++|+|||||||||+||+.+.+.|.+.+
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            23444433332221  11 112332 33    455679999999999999999999999999999999999999999998


Q ss_pred             HHHH-hCCcEEEEEcCChhHHhccCeEEEEeC----CeEE-EecChhhhhh
Q psy10858        266 QVFV-GKGRTVIMTTQYIEEANDASEVAFLYK----GRII-AQDSPDGFKS  310 (457)
Q Consensus       266 ~~~~-~~g~TIIisTH~~~ea~~~dri~im~~----GkI~-~~gs~~~l~~  310 (457)
                      .... .+++|+|++||+++.++.||+|++|++    |+++ +.|+.++|++
T Consensus      1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            7764 368999999999999999999999999    9955 8999999986

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=3.1e-41  Score=331.82  Aligned_cols=201  Identities=18%  Similarity=0.224  Sum_probs=167.4

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCccCCCCchh
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-----------VLGGHPASIYHK  161 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-----------i~G~~~~~~~~~  161 (457)
                      .+++++|+++ +.+|+|+|+ +++||+++|+||||||||||||+|+|+++|++|+|+           ++|.++......
T Consensus         4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence            4789999762 359999994 999999999999999999999999999999999996           677765432111


Q ss_pred             hh--cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        162 TA--GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       162 ~~--r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ..  ...++|++|...+++. ++.+++.+..     ........+.++++.+++.. .++.+.+||||||||++||+||+
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~  155 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA  155 (255)
T ss_pred             hhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence            11  1248999999988874 7888886542     12233456778899999965 68899999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEe
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ  302 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~  302 (457)
                      .+|+++||||||+|||+.+++.++++++.++++|+|||++||+++++.. ||++++| +|++.+.
T Consensus       156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~  219 (255)
T cd03236         156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAY  219 (255)
T ss_pred             hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcc
Confidence            9999999999999999999999999988877779999999999999975 9999999 4666543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-41  Score=366.65  Aligned_cols=201  Identities=20%  Similarity=0.327  Sum_probs=174.7

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+|+++|+++.|++  +.+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|.+++.           .+
T Consensus       310 ~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~  376 (638)
T PRK10636        310 NPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK  376 (638)
T ss_pred             CceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence            458999999999987  88999999999999999999999999999999999999999999998531           26


Q ss_pred             EEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        167 VGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       167 IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +||++|+.  .+.+..|+.+++...   .   ......++..+++.+++.  ..++++++|||||||||+||+||+.+|+
T Consensus       377 igy~~Q~~~~~l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~  450 (638)
T PRK10636        377 LGYFAQHQLEFLRADESPLQHLARL---A---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN  450 (638)
T ss_pred             EEEecCcchhhCCccchHHHHHHHh---C---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            99999974  355667888776321   1   122345677889999995  3689999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFK  309 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~  309 (457)
                      +|||||||+|||+.+++.+++++..+  .| |||+||||++++.. |||+++|++|+++ +.|+.++..
T Consensus       451 lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        451 LLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            99999999999999999999998775  34 99999999999975 9999999999997 789888764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2e-40  Score=336.75  Aligned_cols=235  Identities=21%  Similarity=0.297  Sum_probs=205.2

Q ss_pred             cCceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCccCCCCc
Q psy10858         87 EEADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-----SQGEIWVLGGHPASIY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-----~sG~I~i~G~~~~~~~  159 (457)
                      .+.++++|++..|+.  +...|+++|||+|++||.++|+|.||||||-+...|+|+++-     -+|+|.++|.++-..+
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s   83 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS   83 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence            468999999999962  237899999999999999999999999999999999999864     4689999999875443


Q ss_pred             hh----hhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCC----CCCCCCCCChhHH
Q psy10858        160 HK----TAGSKVGYMPQEL--AMFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPN----LERPVKYLSGGQK  228 (457)
Q Consensus       160 ~~----~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~----~~~~~~~LSGGqk  228 (457)
                      ..    ....+|+++||+|  +|.|-.|+...+.-..++ +|++.+..++++.++++.++++.    ++.+|++||||||
T Consensus        84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR  163 (534)
T COG4172          84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR  163 (534)
T ss_pred             HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence            22    2346899999999  677878887777655544 57888999999999999999963    5889999999999


Q ss_pred             HHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858        229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       229 QRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~  306 (457)
                      |||.||+||+.+|++||.||||++||...+.+|+++++.++ +.|++++++|||+..++. +|||++|.+|++++.|+.+
T Consensus       164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~  243 (534)
T COG4172         164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE  243 (534)
T ss_pred             hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence            99999999999999999999999999999999999987765 459999999999999976 9999999999999999999


Q ss_pred             hhhhcCCcccHHHHH
Q psy10858        307 GFKSKYSMPKLSDVF  321 (457)
Q Consensus       307 ~l~~~~~~~~l~~~f  321 (457)
                      .++.....++.....
T Consensus       244 ~lF~~PqHpYTr~Ll  258 (534)
T COG4172         244 TLFAAPQHPYTRKLL  258 (534)
T ss_pred             HHhhCCCChHHHHHH
Confidence            999987776655543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4.8e-41  Score=395.12  Aligned_cols=208  Identities=23%  Similarity=0.307  Sum_probs=172.5

Q ss_pred             ceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-CccCCCCchhhhcCc
Q psy10858         89 ADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL-GGHPASIYHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~-G~~~~~~~~~~~r~~  166 (457)
                      .|+++||+++|+.. +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++ |.++...+....|++
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            69999999999852 2469999999999999999999999999999999999999999999994 577665555566789


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh----------cCC---C-------------------------------------
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI----------YGM---D-------------------------------------  196 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l----------~g~---~-------------------------------------  196 (457)
                      ||||+|++.+|+ .||+||+.++...          ++.   +                                     
T Consensus       462 Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  540 (1466)
T PTZ00265        462 IGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN  540 (1466)
T ss_pred             ccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence            999999999997 4999999985310          000   0                                     


Q ss_pred             -HHHHHHHHHHHHhHcCCC-------C-----CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        197 -ESIWLFQMRKYSHVLKLP-------N-----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       197 -~~~~~~~~~~ll~~l~L~-------~-----~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                       .....+.+.++++.+++.       .     .++.+.+||||||||++|||||+++|+|||||||||+||+.+++.+++
T Consensus       541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~  620 (1466)
T PTZ00265        541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK  620 (1466)
T ss_pred             cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence             000123344555555432       1     246788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCC
Q psy10858        264 LLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKG  297 (457)
Q Consensus       264 ~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~G  297 (457)
                      .++.+++ +|+|+|++||+++.++.||+|++|++|
T Consensus       621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence            9887764 589999999999999889999999986

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=9.3e-41  Score=394.99  Aligned_cols=215  Identities=21%  Similarity=0.278  Sum_probs=187.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|..+...||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+....|++|
T Consensus      1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence            36999999999976435799999999999999999999999999999999999999999999999999888777889999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-CCC----CCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-NLE----RPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-~~~----~~~~~LSGGqkQRlsLA~  235 (457)
                      +|+||++.+|+. |+++||..+.   ..+++++.    ++++..++       + .+|    ....+||||||||++|||
T Consensus      1363 ~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~----~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957      1363 TIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVW----WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLAR 1434 (1522)
T ss_pred             eEECCCCcccCc-cHHHHcCccc---CCCHHHHH----HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHH
Confidence            999999999986 9999997432   23444433    33333332       1 133    345679999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|+|||||||||+||+.+.+.|.+.++.. .+++|||+++|+++.+..||||++|++|+|++.|+|++++++
T Consensus      1435 ALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~-~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957      1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ-FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999998765 358999999999999999999999999999999999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.1e-40  Score=394.34  Aligned_cols=214  Identities=18%  Similarity=0.272  Sum_probs=186.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||+++|..+...||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++...+....|++||
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence            59999999999764356999999999999999999999999999999999999999999999999998877778899999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-------C-CC----CCCCCCChhHHHHHHHHHH
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-------N-LE----RPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-------~-~~----~~~~~LSGGqkQRlsLA~A  236 (457)
                      |+||++.||+. ||++||..+.   ..++++    +.++++..++.       . +|    ....+||||||||++||||
T Consensus      1388 iVpQdp~LF~g-TIreNIdp~~---~~sdee----I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243       1388 MIPQDPVLFDG-TVRQNVDPFL---EASSAE----VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred             EECCCCccccc-cHHHHhCccc---CCCHHH----HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence            99999999976 9999996532   233443    34444444432       1 23    3446799999999999999


Q ss_pred             hhcC-CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHK-PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~-P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+++ |+|||||||||+||+.+.+.|.+.++.. .+++|||+++|+++.+..||+|++|++|+|++.|++++++++
T Consensus      1460 LL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243       1460 LLKKGSGFILMDEATANIDPALDRQIQATVMSA-FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred             HhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH-CCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9996 8999999999999999999999998765 357999999999999999999999999999999999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2.2e-40  Score=362.98  Aligned_cols=204  Identities=24%  Similarity=0.280  Sum_probs=174.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+|+++||+++|++  +.+++|+||+|++|+++||+||||||||||||+|+|+++|++|+|++ |..          -+
T Consensus       317 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------~~  383 (635)
T PRK11147        317 KIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------LE  383 (635)
T ss_pred             CceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----------cE
Confidence            458999999999987  78999999999999999999999999999999999999999999998 532          25


Q ss_pred             EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      |||++|+. .+++.+||.||+.+........  .....+..++..+++. . .++++++|||||||||+||+||+.+|++
T Consensus       384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l  461 (635)
T PRK11147        384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL  461 (635)
T ss_pred             EEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999986 5889999999998743211111  1134567788888884 3 6899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe-CCeEEE-ecChhhh
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY-KGRIIA-QDSPDGF  308 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~-~GkI~~-~gs~~~l  308 (457)
                      |||||||+|||+.+++.++++++..   +.|||+||||++++.. ||++++|+ +|++.. .|+-++.
T Consensus       462 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        462 LILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence            9999999999999999999988664   4599999999999975 99999998 899865 4554443

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=8.5e-41  Score=357.85  Aligned_cols=185  Identities=25%  Similarity=0.343  Sum_probs=157.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|++. +.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++... ....|+.|
T Consensus       333 ~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i  410 (529)
T TIGR02868       333 PTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRI  410 (529)
T ss_pred             ceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhhe
Confidence            359999999999753 4699999999999999999999999999999999999999999999999999877 77788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-CC----CCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-LE----RPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-~~----~~~~~LSGGqkQRlsLA~  235 (457)
                      |||||++.+|+. |++||+.++..  ..++++.    .++++..++       ++ .|    ....+||||||||++|||
T Consensus       411 ~~V~Q~~~lF~~-TI~eNI~~g~~--~~~~e~i----~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR  483 (529)
T TIGR02868       411 SVFAQDAHLFDT-TVRDNLRLGRP--DATDEEL----WAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR  483 (529)
T ss_pred             EEEccCcccccc-cHHHHHhccCC--CCCHHHH----HHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence            999999999976 99999987531  2233333    333443333       21 23    345679999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI  282 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~  282 (457)
                      ||+++|++||||||||+||+.+.+.+.+.+... .+++|+|++||++
T Consensus       484 all~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl  529 (529)
T TIGR02868       484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL  529 (529)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence            999999999999999999999999999998764 4689999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0055|consensus

Probab=100.00  E-value=2.1e-40  Score=373.11  Aligned_cols=220  Identities=25%  Similarity=0.356  Sum_probs=192.3

Q ss_pred             ceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         89 ADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        89 ~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      -|+++||+++|... +..|++|+||+|++|+-+||+|||||||||.+.+|-.++.|++|.|.+||.++...+...+|++|
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence            59999999999753 36799999999999999999999999999999999999999999999999999988888899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--H-hHcCCCC-CC----CCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--S-HVLKLPN-LE----RPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l-~~l~L~~-~~----~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |.|.|+|.||.. |++||+.|+  ..+.+.+++.++++.+  - -...||. .|    .+..+||||||||++||||+++
T Consensus      1067 ~lVsQEP~LF~~-TIrENI~YG--~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNG-TIRENIAYG--SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred             ceeccCchhhcc-cHHHHHhcc--CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence            999999999965 999999987  2225555544433221  1 1234553 34    5566899999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ||+||||||.||+||.++.+.+-+.++..+ .|+|.|+++|.+..++.||.|+||++|+|++.|+.++|.++.
T Consensus      1144 nPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred             CCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCC
Confidence            999999999999999999999999999864 689999999999999999999999999999999999999853

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=4.8e-40  Score=296.59  Aligned_cols=143  Identities=31%  Similarity=0.404  Sum_probs=134.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++++|++++|++  ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.           +.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~   67 (144)
T cd03221           1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY   67 (144)
T ss_pred             CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence            478999999987  68999999999999999999999999999999999999999999999873           46999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      +||                                                  ||+||+||++|||||+.+|+++|||||
T Consensus        68 ~~~--------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP   97 (144)
T cd03221          68 FEQ--------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP   97 (144)
T ss_pred             Ecc--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            999                                                  999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        250 CVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       250 TsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      |+|||+.+++.+++.++.+   +.|||++||+++++.. ||++++|++||
T Consensus        98 ~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          98 TNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             ccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999998765   4799999999999965 89999999986

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-40  Score=358.66  Aligned_cols=204  Identities=20%  Similarity=0.251  Sum_probs=167.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++||+++||+  +.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|+++|.           .++|
T Consensus         1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----------~~i~   67 (638)
T PRK10636          1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----------WQLA   67 (638)
T ss_pred             CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence            5899999999998  88999999999999999999999999999999999999999999999763           1378


Q ss_pred             EEcCCCCCCCCCCHHHHHHH-----------------------hhhhcC----CCHHHHHHHHHHHHhHcCCC--CCCCC
Q psy10858        169 YMPQELAMFGELTIKETLNF-----------------------FGMIYG----MDESIWLFQMRKYSHVLKLP--NLERP  219 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~-----------------------~~~l~g----~~~~~~~~~~~~ll~~l~L~--~~~~~  219 (457)
                      |++|+...+ ..|+.+++.-                       +..+.+    ........++..+++.+++.  ..+++
T Consensus        68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~  146 (638)
T PRK10636         68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP  146 (638)
T ss_pred             EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence            888864332 2455443321                       000100    11112345678889999995  36899


Q ss_pred             CCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       220 ~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      +.+|||||||||+||+||+.+|+||||||||+|||+.++..+.++++..   +.|||+||||++++.. ||++++|++|+
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~  223 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQS  223 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence            9999999999999999999999999999999999999999999987654   5699999999999975 99999999999


Q ss_pred             EE-EecChhhhh
Q psy10858        299 II-AQDSPDGFK  309 (457)
Q Consensus       299 I~-~~gs~~~l~  309 (457)
                      +. ..|+.+...
T Consensus       224 i~~~~g~~~~~~  235 (638)
T PRK10636        224 LFEYTGNYSSFE  235 (638)
T ss_pred             EEEecCCHHHHH
Confidence            96 467665544

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.5e-40  Score=311.72  Aligned_cols=235  Identities=27%  Similarity=0.357  Sum_probs=190.5

Q ss_pred             ceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         89 ADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      |+++.|+++.|.++   .+.||+++|++|++|+++.++|.||||||||++.|+|.+.|++|+|.++|.+++..+......
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~   80 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN   80 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence            56788888888753   267999999999999999999999999999999999999999999999999998776655667


Q ss_pred             cEEEEcCCC--CCCCCCCHHHHHHHhhhh---cCCCHH---HHHHHHHHHHhHcCC--C-CCCCCCCCCChhHHHHHHHH
Q psy10858        166 KVGYMPQEL--AMFGELTIKETLNFFGMI---YGMDES---IWLFQMRKYSHVLKL--P-NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       166 ~IGyvpQ~~--~L~~~lTV~EnL~~~~~l---~g~~~~---~~~~~~~~ll~~l~L--~-~~~~~~~~LSGGqkQRlsLA  234 (457)
                      .++-|+|+|  ..++.||+.||+.+...-   +|+...   ..++...+.+..+++  + .++.++.-|||||||-|+++
T Consensus        81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~  160 (263)
T COG1101          81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL  160 (263)
T ss_pred             HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence            788999999  479999999999875432   334332   222233344555554  3 37889999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      .|-++.|+||+|||-|++|||.....+++. -+...+.+.|.+||||+|+.|- +.+|.++|++|+|+-+-+-++ +...
T Consensus       161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~-k~~L  239 (263)
T COG1101         161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE-KASL  239 (263)
T ss_pred             HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc-ccCC
Confidence            999999999999999999999999999999 5555566899999999999985 589999999999997755433 2222


Q ss_pred             CcccHHHHHHhh
Q psy10858        313 SMPKLSDVFYKI  324 (457)
Q Consensus       313 ~~~~l~~~f~~~  324 (457)
                      ....+.+.|.+.
T Consensus       240 ~v~dli~~F~~~  251 (263)
T COG1101         240 TVLDLIQMFEKI  251 (263)
T ss_pred             cHHHHHHHHHHH
Confidence            334555566543

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.4e-39  Score=380.02  Aligned_cols=215  Identities=22%  Similarity=0.299  Sum_probs=185.9

Q ss_pred             ceEEEeeEEEeCC-----------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccC
Q psy10858         89 ADEGKNTEKEELK-----------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHP  155 (457)
Q Consensus        89 ~Iei~nlsk~yg~-----------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~  155 (457)
                      .+..+||++....           .++.+|+|||++|++||+++|+|||||||||||++|+|..++  .+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            5889999988731           125799999999999999999999999999999999999863  789999999765


Q ss_pred             CCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCC-----CCCChh
Q psy10858        156 ASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPV-----KYLSGG  226 (457)
Q Consensus       156 ~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~-----~~LSGG  226 (457)
                      ..   ...++.+|||+|++.+++.+||+|||.|.+.++   ..+.++..++++++++.++|.+ .++.+     +.||||
T Consensus       947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140        947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred             Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence            32   234567999999999999999999999877553   2344555667889999999965 56665     589999


Q ss_pred             HHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HH-hccCeEEEEeC-CeEEEec
Q psy10858        227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EA-NDASEVAFLYK-GRIIAQD  303 (457)
Q Consensus       227 qkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea-~~~dri~im~~-GkI~~~g  303 (457)
                      |||||+||+||+.+|++|||||||+|||+.++..++++++.++++|+|||+|||+++ ++ +.+|++++|++ |+++..|
T Consensus      1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140       1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence            999999999999999999999999999999999999998888888999999999998 45 45999999996 8999999


Q ss_pred             Chh
Q psy10858        304 SPD  306 (457)
Q Consensus       304 s~~  306 (457)
                      ++.
T Consensus      1104 ~~~ 1106 (1470)
T PLN03140       1104 PLG 1106 (1470)
T ss_pred             Ccc
Confidence            874

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2.4e-39  Score=354.78  Aligned_cols=204  Identities=20%  Similarity=0.225  Sum_probs=166.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.           ..++
T Consensus         3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~~   69 (635)
T PRK11147          3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIVA   69 (635)
T ss_pred             EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEEE
Confidence            7999999999998  88999999999999999999999999999999999999999999998752           1367


Q ss_pred             EEcCCCCCCCCCCHHHHHH------------------------------Hhhhhc----CCCHHHHHHHHHHHHhHcCCC
Q psy10858        169 YMPQELAMFGELTIKETLN------------------------------FFGMIY----GMDESIWLFQMRKYSHVLKLP  214 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~------------------------------~~~~l~----g~~~~~~~~~~~~ll~~l~L~  214 (457)
                      |++|.+......+|.+++.                              .+..+.    .........++..+++.+++.
T Consensus        70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~  149 (635)
T PRK11147         70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD  149 (635)
T ss_pred             EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence            7777543322345554431                              111110    011112345677889999986


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEE
Q psy10858        215 NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAF  293 (457)
Q Consensus       215 ~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~i  293 (457)
                       .++++.+|||||||||+||+||+.+|+||||||||++||+.+++.+++++..+   +.|||+||||++++.. ||+|++
T Consensus       150 -~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~  225 (635)
T PRK11147        150 -PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVD  225 (635)
T ss_pred             -CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEE
Confidence             48899999999999999999999999999999999999999999999998765   3599999999999975 999999


Q ss_pred             EeCCeEEE-ecChhhhh
Q psy10858        294 LYKGRIIA-QDSPDGFK  309 (457)
Q Consensus       294 m~~GkI~~-~gs~~~l~  309 (457)
                      |++|+++. .|+.++..
T Consensus       226 L~~G~i~~~~g~~~~~~  242 (635)
T PRK11147        226 LDRGKLVSYPGNYDQYL  242 (635)
T ss_pred             EECCEEEEecCCHHHHH
Confidence            99999974 57776654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.9e-39  Score=383.10  Aligned_cols=213  Identities=23%  Similarity=0.316  Sum_probs=184.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|..+...+|+||||+|++||.+||+|+||||||||+++|.|+++ ++|+|+++|.++...+....|++|
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence            3699999999997544689999999999999999999999999999999999997 799999999999887777789999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--------CCCC----CCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--------NLER----PVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--------~~~~----~~~~LSGGqkQRlsLA~  235 (457)
                      +|+||++.+|+. |+++||..+.   ..++++    +.++++..++.        .+|.    ...+||||||||++|||
T Consensus      1295 s~IpQdp~LF~G-TIR~NLdp~~---~~tdee----i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271      1295 GVIPQKVFIFSG-TFRKNLDPYE---QWSDEE----IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred             EEEeCCCccCcc-CHHHHhCccc---CCCHHH----HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence            999999999986 9999996542   223333    44445555441        1233    34479999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||+++|+|||||||||+||+.+.+.|.+.++.. .+++|||++||.++.+..||||++|++|+|++.|+|+++++
T Consensus      1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~-~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS-FSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            999999999999999999999999999998775 35799999999999999999999999999999999999985

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.4e-39  Score=302.03  Aligned_cols=229  Identities=20%  Similarity=0.255  Sum_probs=202.5

Q ss_pred             CceEEEeeEEEeCC-------CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch
Q psy10858         88 EADEGKNTEKEELK-------PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH  160 (457)
Q Consensus        88 ~~Iei~nlsk~yg~-------~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~  160 (457)
                      +.++++|++|.|..       ....|++.|||++++|+..|++|.||||||||.|||+|+++|++|+|.++|+.+...+.
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            56899999999853       23569999999999999999999999999999999999999999999999998865554


Q ss_pred             hhhcCcEEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCC-CC-CCCCCCCCChhHHHHHHHHH
Q psy10858        161 KTAGSKVGYMPQEL--AMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKL-PN-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       161 ~~~r~~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L-~~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ....++|-++||++  ++.|.+.+-+-|....++. .+......+++.+.+..+|| ++ ++-+++.||-||||||++||
T Consensus        83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR  162 (267)
T COG4167          83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR  162 (267)
T ss_pred             HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence            55567899999998  4777788888887776653 56777778889999999999 44 88999999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||+.+|+|+|.||..++||...|.++.++ ++...+.|.+-|.|+.++..++. +|.|++|++|++++.|++++++..+.
T Consensus       163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~  242 (267)
T COG4167         163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL  242 (267)
T ss_pred             HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCc
Confidence            99999999999999999999999999999 66656679999999999999986 89999999999999999999998765


Q ss_pred             ccc
Q psy10858        314 MPK  316 (457)
Q Consensus       314 ~~~  316 (457)
                      .+-
T Consensus       243 ~~~  245 (267)
T COG4167         243 HEL  245 (267)
T ss_pred             cHH
Confidence            443

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.8e-39  Score=311.81  Aligned_cols=197  Identities=24%  Similarity=0.380  Sum_probs=178.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      +.||+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.+.|+-..-     ..  +     .-.+-+++|.+
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l-----i~--l-----g~Gf~pelTGr  107 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL-----IE--L-----GAGFDPELTGR  107 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh-----hh--c-----ccCCCcccchH
Confidence            679999999999999999999999999999999999999999999998853211     00  1     12355789999


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW  262 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~  262 (457)
                      ||+.+.+.+.|++.++++++++++.+.-+|.+ .+.+++++|.||+-||++|.|...+|++||+||-.+--|+.-+++=.
T Consensus       108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~  187 (249)
T COG1134         108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL  187 (249)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence            99999999999999999999999999999954 89999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        263 DLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       263 ~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      +.+....++++|||++|||++.+++ |||+++|++|++...|+++++...|
T Consensus       188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y  238 (249)
T COG1134         188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY  238 (249)
T ss_pred             HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHH
Confidence            8888887788999999999999976 9999999999999999999987654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2.6e-39  Score=302.47  Aligned_cols=153  Identities=22%  Similarity=0.254  Sum_probs=137.0

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcC
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ  172 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ  172 (457)
                      .|++++|++  +.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.            .++|++|
T Consensus         4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q   68 (177)
T cd03222           4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQ   68 (177)
T ss_pred             CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcc
Confidence            589999998  8899984 999999999999999999999999999999999999999873            3889998


Q ss_pred             CCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCC
Q psy10858        173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVG  252 (457)
Q Consensus       173 ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsG  252 (457)
                      +..                                               ||||||||++|||||+.+|+++||||||+|
T Consensus        69 ~~~-----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~  101 (177)
T cd03222          69 YID-----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAY  101 (177)
T ss_pred             cCC-----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            653                                               999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHhc-cCeEEEEeCCeEEEe--cChhh
Q psy10858        253 VDPLVRKRMWDLLQVFVGKG-RTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ--DSPDG  307 (457)
Q Consensus       253 LDp~~r~~i~~~i~~~~~~g-~TIIisTH~~~ea~~-~dri~im~~GkI~~~--gs~~~  307 (457)
                      ||+.+++.+++.+..+.+++ .|||++||+++++.. ||++++|+++-.+..  |.|..
T Consensus       102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~  160 (177)
T cd03222         102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG  160 (177)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence            99999999999987766664 999999999999975 999999998765433  55543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=7.7e-39  Score=354.39  Aligned_cols=202  Identities=20%  Similarity=0.298  Sum_probs=168.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|+++.|++. ..+|+|+||+|++||++||+||||||||||||+|+|+++|++|+|++++           +.+
T Consensus       506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~  573 (718)
T PLN03073        506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR  573 (718)
T ss_pred             CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence            3689999999999641 5799999999999999999999999999999999999999999999853           246


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHh-hhhc-CCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        167 VGYMPQELAMFGELTIKETLNFF-GMIY-GMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~-~~l~-g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      |||++|++  +..+++.++..+. ...+ +..    .+++..+++.+++. . .++++.+|||||||||+||+||+.+|+
T Consensus       574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~  647 (718)
T PLN03073        574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  647 (718)
T ss_pred             EEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC
Confidence            99999986  2445666664332 1211 222    24567789999995 2 688999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFK  309 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~  309 (457)
                      +|||||||+|||+.+++.+++.+...  .| |||++|||++++.. |||+++|++|+++ ..|++++..
T Consensus       648 lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        648 ILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            99999999999999999998886553  34 99999999999975 9999999999998 678776643

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=9.4e-39  Score=290.25  Aligned_cols=155  Identities=39%  Similarity=0.596  Sum_probs=142.2

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEc
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP  171 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp  171 (457)
                      +++++++|.+  +.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++........++.++|++
T Consensus         2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~   79 (157)
T cd00267           2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP   79 (157)
T ss_pred             eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence            6799999987  68999999999999999999999999999999999999999999999998765433334457899999


Q ss_pred             CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858        172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV  251 (457)
Q Consensus       172 Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs  251 (457)
                      |                                                  ||+||+||++||+||+.+|+++||||||+
T Consensus        80 q--------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~  109 (157)
T cd00267          80 Q--------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS  109 (157)
T ss_pred             e--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            9                                                  99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      |||+.++..+++.+....+++.|+|++||+++++.. ||++++|++|+
T Consensus       110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         110 GLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            999999999999987776668999999999999976 79999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=7e-39  Score=352.51  Aligned_cols=192  Identities=21%  Similarity=0.260  Sum_probs=161.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|.++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++           ++++
T Consensus       450 ~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i  517 (659)
T TIGR00954       450 NGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKL  517 (659)
T ss_pred             CeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcE
Confidence            479999999999632 5799999999999999999999999999999999999999999998742           3579


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCC-HHHHHHHHHHHHhHcCCCC-CCC---------CCCCCChhHHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPN-LER---------PVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~-~~~~~~~~~~ll~~l~L~~-~~~---------~~~~LSGGqkQRlsLA~A  236 (457)
                      ||+||++.+++. |++||+.+.....+.. .....+++.++++.+++.. .++         ...+||||||||++||||
T Consensus       518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            999999998877 9999998754322111 0111234567777788743 333         247899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY  295 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~  295 (457)
                      |+++|++|||||||+|||+.+++.+.+.++.   .|+|||++||+++++..||++++|+
T Consensus       597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~  652 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMD  652 (659)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEe
Confidence            9999999999999999999999999988754   4899999999999998899999996

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.9e-39  Score=375.53  Aligned_cols=206  Identities=25%  Similarity=0.265  Sum_probs=176.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE  179 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll----~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~  179 (457)
                      +.+|+|||+++++||+++|+||||||||||||+|+|+.    +|++|+|.++|.++.... ...++.++|++|++.+++.
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence            67999999999999999999999999999999999996    579999999998764322 2345679999999999999


Q ss_pred             CCHHHHHHHhhhhc-------CCCHHHHHHH-HHHHHhHcCCCC-CCC-----CCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        180 LTIKETLNFFGMIY-------GMDESIWLFQ-MRKYSHVLKLPN-LER-----PVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       180 lTV~EnL~~~~~l~-------g~~~~~~~~~-~~~ll~~l~L~~-~~~-----~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      +||+|||.|.+.++       +.++++..++ ++.+++.++|.+ .++     .++.|||||||||+||+||+.+|++|+
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            99999999977654       2334443333 456889999964 444     457799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCh-hHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYI-EEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~-~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||||+|||+.++..+++.++.+.+ .|+|||+++|+. +++. .+|++++|++|+++..|+++++.+
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~  300 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ  300 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence            9999999999999999999888765 499999999997 5665 599999999999999999988743

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=331.34  Aligned_cols=219  Identities=24%  Similarity=0.375  Sum_probs=189.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      -.+.+++++..=.+.++++|+++||++.+||.+||+||||||||||.|+|.|..+|++|.|.+||-++.+.+.+...++|
T Consensus       333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi  412 (580)
T COG4618         333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI  412 (580)
T ss_pred             ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence            46999999987666568999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHH-----HHHHHHhHcCCCC-CCC----CCCCCChhHHHHHHHHHHh
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLF-----QMRKYSHVLKLPN-LER----PVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l~L~~-~~~----~~~~LSGGqkQRlsLA~AL  237 (457)
                      ||+||+..||+. ||.||+.-+..  ..+.+.+-+     .++++.  +.++. .|.    --..||||||||++|||||
T Consensus       413 GYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl  487 (580)
T COG4618         413 GYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGGATLSGGQRQRIALARAL  487 (580)
T ss_pred             CcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence            999999999986 99999964331  122222211     133333  23432 343    3457999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      -.+|.+++||||-|+||......+.+.+...+++|.|+|++||....+..+|+|++|++|++...|+.++++.+
T Consensus       488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            99999999999999999999999999998989999999999999999999999999999999999999998765

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-38  Score=298.77  Aligned_cols=222  Identities=26%  Similarity=0.336  Sum_probs=195.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCccCCCCch-hhhc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQGEIWVLGGHPASIYH-KTAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~sG~I~i~G~~~~~~~~-~~~r  164 (457)
                      .+++++||+.+..+. +.+|++|||+|++||+++|+||||||||||.+.|+|.-  .+++|+|.++|+++...+. +..|
T Consensus         2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr   80 (251)
T COG0396           2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR   80 (251)
T ss_pred             ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence            479999999999872 38999999999999999999999999999999999995  7899999999999987654 3456


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCC--HHHHHHHHHHHHhHcCCCC--CCCCCC-CCChhHHHHHHHHHHhh
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIY-GMD--ESIWLFQMRKYSHVLKLPN--LERPVK-YLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~--~~~~~~~~~~ll~~l~L~~--~~~~~~-~LSGGqkQRlsLA~ALl  238 (457)
                      ..|...||.|.=++..|+.+.|....... +..  ..+..+.+++.++.++++.  ++|.++ .+|||||+|..|+.+++
T Consensus        81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~  160 (251)
T COG0396          81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL  160 (251)
T ss_pred             cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence            78999999999999999999998655432 211  2356677888899999954  788887 59999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      .+|++.|||||-||||..+-+.+-+.++.+++.|.+++++||+-..+..  .|+|.+|-+|+|+.+|.| ++...
T Consensus       161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~  234 (251)
T COG0396         161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE  234 (251)
T ss_pred             cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence            9999999999999999999999999999999999999999999998876  599999999999999999 66543

>KOG0061|consensus

Probab=100.00  E-value=4e-38  Score=343.55  Aligned_cols=236  Identities=25%  Similarity=0.391  Sum_probs=201.9

Q ss_pred             CceEEEeeEEEeCCC---CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCccCCCCchh
Q psy10858         88 EADEGKNTEKEELKP---SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI---SQGEIWVLGGHPASIYHK  161 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~---~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p---~sG~I~i~G~~~~~~~~~  161 (457)
                      .-+..++++....++   .+.+|+|||.++++||+.||+||+||||||||++|+|....   .+|+|++||+....   .
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---~  100 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---R  100 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch---h
Confidence            346777888777553   37899999999999999999999999999999999999974   79999999965432   3


Q ss_pred             hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCC-----CCChhHHHHHH
Q psy10858        162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVK-----YLSGGQKRRLS  232 (457)
Q Consensus       162 ~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~-----~LSGGqkQRls  232 (457)
                      ..++..|||.|++.+++.+||+|+|.|.+.++   .++.++.+++++++++.++|.. .|..++     .+||||||||+
T Consensus       101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs  180 (613)
T KOG0061|consen  101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS  180 (613)
T ss_pred             hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence            45688999999999999999999999998875   2467888999999999999975 677775     59999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh-HH-hccCeEEEEeCCeEEEecChhhhhh
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE-EA-NDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~-ea-~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||.-|+++|.||+|||||||||.....++.++++.++++|+|||+|=|... ++ ...|++++|.+|+++..|+++++.+
T Consensus       181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~  260 (613)
T KOG0061|consen  181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE  260 (613)
T ss_pred             HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence            999999999999999999999999999999998888778999999999986 35 4589999999999999999987654


Q ss_pred             cC---C-----cccHHHHHHhhhc
Q psy10858        311 KY---S-----MPKLSDVFYKITN  326 (457)
Q Consensus       311 ~~---~-----~~~l~~~f~~~~~  326 (457)
                      -+   +     ..+-.|.++++..
T Consensus       261 ff~~~G~~~P~~~Npadf~l~l~s  284 (613)
T KOG0061|consen  261 FFSSLGFPCPELENPADFLLDLLS  284 (613)
T ss_pred             HHHhCCCCCCCcCChHHHHHHHHc
Confidence            22   2     2244566665544

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.2e-38  Score=346.60  Aligned_cols=193  Identities=22%  Similarity=0.257  Sum_probs=161.7

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCccCCCCchh
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-----------VLGGHPASIYHK  161 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-----------i~G~~~~~~~~~  161 (457)
                      ++++++||.+ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|.           ++|.++......
T Consensus        77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~  154 (590)
T PRK13409         77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK  154 (590)
T ss_pred             cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence            3479999862 46999999 9999999999999999999999999999999999997           888776432111


Q ss_pred             --hhcCcEEEEcCCCCCCCC---CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858        162 --TAGSKVGYMPQELAMFGE---LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       162 --~~r~~IGyvpQ~~~L~~~---lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                        ..+.+++|.+|....++.   .||.|++...         +...++.++++.+++.. .++.+.+|||||||||+||+
T Consensus       155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~  225 (590)
T PRK13409        155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA  225 (590)
T ss_pred             HhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence              112346777765544433   3999998631         23456788899999965 79999999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG  297 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G  297 (457)
                      ||+.+|++|||||||++||+..+..++++++.+++ |+|||++||+++++.. ||++++|+++
T Consensus       226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            99999999999999999999999999999888877 9999999999999976 9999999863

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=6.7e-38  Score=292.67  Aligned_cols=155  Identities=21%  Similarity=0.322  Sum_probs=134.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..+|+|+||+|++|++++|+||||||||||||+|.+    ++|++.++|... .    ..+..++|++|           
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~-~----~~~~~~~~~~q-----------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP-K----FSRNKLIFIDQ-----------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc-c----cccccEEEEhH-----------
Confidence            679999999999999999999999999999999863    799999977532 1    12346889887           


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC--CceEEEeCCCCCCCHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK--PQLIILDEPCVGVDPLVRK  259 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~--P~lLILDEPTsGLDp~~r~  259 (457)
                                           .++++.+++..  .++++.+||||||||++||+||+.+  |++|||||||+|||+..++
T Consensus        68 ---------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~  126 (176)
T cd03238          68 ---------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN  126 (176)
T ss_pred             ---------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence                                 13466777742  6889999999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858        260 RMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI  299 (457)
Q Consensus       260 ~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI  299 (457)
                      .+++.++.++++|+|||++||+++++..||++++|.+|+.
T Consensus       127 ~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~  166 (176)
T cd03238         127 QLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG  166 (176)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence            9999988776679999999999999877999999977654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=7.3e-38  Score=367.52  Aligned_cols=204  Identities=27%  Similarity=0.331  Sum_probs=176.1

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      +.+|+|||+.|++||+++|+||||||||||||+|+|+++|+   +|+|.++|.++...   ..++.+||++|++.+++.+
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~---~~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF---VPRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh---cccceeEEecccccCCCcC
Confidence            67999999999999999999999999999999999999998   99999999877432   2357899999999999999


Q ss_pred             CHHHHHHHhhhhcCCC----------HHHH------------------------HHHHHHHHhHcCCCC-C-----CCCC
Q psy10858        181 TIKETLNFFGMIYGMD----------ESIW------------------------LFQMRKYSHVLKLPN-L-----ERPV  220 (457)
Q Consensus       181 TV~EnL~~~~~l~g~~----------~~~~------------------------~~~~~~ll~~l~L~~-~-----~~~~  220 (457)
                      ||+|||.|.++.++..          .++.                        ...++.+++.++|.+ .     ++.+
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence            9999999987765321          1110                        012466888999964 2     5677


Q ss_pred             CCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCh-hHHh-ccCeEEEEeCC
Q psy10858        221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYI-EEAN-DASEVAFLYKG  297 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~-~ea~-~~dri~im~~G  297 (457)
                      +.|||||||||+||+||+++|++|+|||||+|||+.++.++++.++.+.+ .|+|||+++|+. +++. .+|+|++|.+|
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G  414 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG  414 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence            89999999999999999999999999999999999999999999888755 589999999996 4664 59999999999


Q ss_pred             eEEEecChhhhhh
Q psy10858        298 RIIAQDSPDGFKS  310 (457)
Q Consensus       298 kI~~~gs~~~l~~  310 (457)
                      +++..|+++++..
T Consensus       415 ~ivy~G~~~~~~~  427 (1470)
T PLN03140        415 QIVYQGPRDHILE  427 (1470)
T ss_pred             eEEEeCCHHHHHH
Confidence            9999999988864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.1e-37  Score=365.13  Aligned_cols=207  Identities=21%  Similarity=0.317  Sum_probs=173.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +|
T Consensus       635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i  701 (1522)
T TIGR00957       635 NSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SV  701 (1522)
T ss_pred             CcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EE
Confidence            37999999999975335799999999999999999999999999999999999999999999875             49


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH--HHHhHcCC-CC-----CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR--KYSHVLKL-PN-----LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~--~ll~~l~L-~~-----~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+++ .||+||+.++..   .+++...+.++  .+.+.++. +.     .+++..+||||||||++||||++.
T Consensus       702 ~yv~Q~~~l~~-~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~  777 (1522)
T TIGR00957       702 AYVPQQAWIQN-DSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS  777 (1522)
T ss_pred             EEEcCCccccC-CcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999875 699999987532   22322222221  11222222 21     356788999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVF--VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~--~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|+++|||||||+||+...+.+++.+...  ..+|+|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus       778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~  851 (1522)
T TIGR00957       778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR  851 (1522)
T ss_pred             CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence            99999999999999999999999985432  2357999999999999988999999999999999999998754

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=9.3e-37  Score=360.56  Aligned_cols=207  Identities=22%  Similarity=0.300  Sum_probs=170.1

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..++++|++++|+.. ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+.            ..++.
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~  680 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS  680 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence            469999999999742 25799999999999999999999999999999999999999998763            13568


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--HhHc-CCCC-----CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--SHVL-KLPN-----LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l~~l-~L~~-----~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      |+||+|++.+++. |++||+.|+..   .++++..+.++..  .+.+ .++.     ......+||||||||++||||+.
T Consensus       681 Iayv~Q~p~Lf~g-TIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly  756 (1495)
T PLN03232        681 VAYVPQVSWIFNA-TVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY  756 (1495)
T ss_pred             EEEEcCccccccc-cHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence            9999999999875 99999987642   2333333322211  1111 1222     23456679999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      .+|+|+|||||||+||+...+++++. +... .+|+|+|++||+++.+..||+|++|++|++++.|+.+++..+
T Consensus       757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~  829 (1495)
T PLN03232        757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS  829 (1495)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence            99999999999999999999998876 5543 368999999999999888999999999999999999998754

>KOG0056|consensus

Probab=100.00  E-value=3.2e-37  Score=318.34  Aligned_cols=219  Identities=21%  Similarity=0.334  Sum_probs=186.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      -|+++||++.|..+ +++|+||||++.+|+.++|+||||+||||+|++|..+...++|.|.++|+++........|+.||
T Consensus       537 ~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG  615 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG  615 (790)
T ss_pred             eEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence            59999999999864 89999999999999999999999999999999999999999999999999987655566889999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHH--HH-HHhHcCCCC-C----CCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM--RK-YSHVLKLPN-L----ERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~--~~-ll~~l~L~~-~----~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      .||||..||++ |+..|+.|. +.. -+.+++.+++  .. ....+++|+ .    .++.-.|||||||||+|||+++..
T Consensus       616 VVPQDtvLFNd-TI~yNIrya-k~~-AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~  692 (790)
T KOG0056|consen  616 VVPQDTVLFND-TILYNIRYA-KPS-ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA  692 (790)
T ss_pred             cccCcceeecc-eeeeheeec-CCC-CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence            99999999987 999999864 222 2233322222  11 223456653 2    345557999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |.+++|||.||+||....+.|-..+..+++ ++|-|++.|.+..+-.||.|+++++|+|++.|..+++..+.
T Consensus       693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rd  763 (790)
T KOG0056|consen  693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRD  763 (790)
T ss_pred             CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhcc
Confidence            999999999999999999999888888764 78888899999999999999999999999999999998763

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.9e-37  Score=343.25  Aligned_cols=217  Identities=17%  Similarity=0.153  Sum_probs=165.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEEcCccCCCCch---
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK---NISQGEIWVLGGHPASIYH---  160 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll---~p~sG~I~i~G~~~~~~~~---  160 (457)
                      ..+|+++|++++|++  +.+|+|+||+|++|+++||+|+||||||||||+|+|..   .|++|+|.+.++.+.....   
T Consensus       175 ~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~  252 (718)
T PLN03073        175 IKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL  252 (718)
T ss_pred             ceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence            457999999999987  78999999999999999999999999999999999964   5788999866654311100   


Q ss_pred             -----------hhhcCcEEEEcCCCCCCCCCCHHHH-----------------HHHhhhhcC-CCHHHHHHHHHHHHhHc
Q psy10858        161 -----------KTAGSKVGYMPQELAMFGELTIKET-----------------LNFFGMIYG-MDESIWLFQMRKYSHVL  211 (457)
Q Consensus       161 -----------~~~r~~IGyvpQ~~~L~~~lTV~En-----------------L~~~~~l~g-~~~~~~~~~~~~ll~~l  211 (457)
                                 ...+..++|++|++.+... ++.++                 +.-....++ .......+++..++..+
T Consensus       253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l  331 (718)
T PLN03073        253 QCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL  331 (718)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence                       0112346778876543221 11111                 110001111 11113455677788888


Q ss_pred             CCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-c
Q psy10858        212 KLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-A  288 (457)
Q Consensus       212 ~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~  288 (457)
                      ++. . .++++.+|||||||||+||+||+.+|++|||||||++||+.++..++++++.+   +.|||+||||++++.. |
T Consensus       332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~  408 (718)
T PLN03073        332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVV  408 (718)
T ss_pred             CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhC
Confidence            885 3 58899999999999999999999999999999999999999999999998664   7899999999999976 9


Q ss_pred             CeEEEEeCCeEE-EecChhhhh
Q psy10858        289 SEVAFLYKGRII-AQDSPDGFK  309 (457)
Q Consensus       289 dri~im~~GkI~-~~gs~~~l~  309 (457)
                      |++++|++|++. ..|+.+++.
T Consensus       409 d~i~~l~~g~i~~~~g~~~~~~  430 (718)
T PLN03073        409 TDILHLHGQKLVTYKGDYDTFE  430 (718)
T ss_pred             CEEEEEECCEEEEeCCCHHHHH
Confidence            999999999996 577765543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=9.8e-37  Score=326.39  Aligned_cols=204  Identities=27%  Similarity=0.321  Sum_probs=173.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|.++++++.||+  +++++|+||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+           .-+|
T Consensus         2 ~~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-----------~~~v   68 (530)
T COG0488           2 SMITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----------GLRV   68 (530)
T ss_pred             ceEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-----------CceE
Confidence            47999999999988  9999999999999999999999999999999999999999999998743           1369


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhh-hcCC-----------------------------CHHHHHHHHHHHHhHcCCCCCC
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGM-IYGM-----------------------------DESIWLFQMRKYSHVLKLPNLE  217 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~-l~g~-----------------------------~~~~~~~~~~~ll~~l~L~~~~  217 (457)
                      ||++|++.+.+..||.+.+..... ++.+                             ..-..+.++..++..++++..+
T Consensus        69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~  148 (530)
T COG0488          69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED  148 (530)
T ss_pred             EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence            999999999999999998754321 1000                             0011235666777778886558


Q ss_pred             CCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC
Q psy10858        218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK  296 (457)
Q Consensus       218 ~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~  296 (457)
                      +++++||||||.||+||+||+.+|++|||||||+.||..+...+-+.+...  +| |||+||||-.++.. |++|+-++.
T Consensus       149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~  225 (530)
T COG0488         149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDR  225 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecC
Confidence            999999999999999999999999999999999999999999999998753  56 99999999999976 999999999


Q ss_pred             CeEEEe-cChhh
Q psy10858        297 GRIIAQ-DSPDG  307 (457)
Q Consensus       297 GkI~~~-gs~~~  307 (457)
                      |++... |.-+.
T Consensus       226 g~l~~y~Gny~~  237 (530)
T COG0488         226 GKLTPYKGNYSS  237 (530)
T ss_pred             CceeEecCCHHH
Confidence            988644 44333

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.9e-37  Score=281.23  Aligned_cols=225  Identities=21%  Similarity=0.270  Sum_probs=184.3

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC-----CCchh
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA-----SIYHK  161 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~-----~~~~~  161 (457)
                      .|.+++.+++|.||.  ....+||||++.+||+.||+|.+|||||||++||+|-+.|++|+|.+.-.+-.     .....
T Consensus         4 ~PLL~V~~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa   81 (258)
T COG4107           4 KPLLSVSGLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA   81 (258)
T ss_pred             CcceeehhhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence            368999999999998  78899999999999999999999999999999999999999999988543211     11111


Q ss_pred             ----hhcCcEEEEcCCCC--CCCCCC----HHHHHH-HhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHH
Q psy10858        162 ----TAGSKVGYMPQELA--MFGELT----IKETLN-FFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQK  228 (457)
Q Consensus       162 ----~~r~~IGyvpQ~~~--L~~~lT----V~EnL~-~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqk  228 (457)
                          ..|..-|+|.|+|.  |-...+    +-|-+. .+.+.||    .+++....+++.++++.  .|..|.++|||||
T Consensus        82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq  157 (258)
T COG4107          82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ  157 (258)
T ss_pred             HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence                12445799999984  332233    333332 2344444    35566778889998853  6889999999999


Q ss_pred             HHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChh
Q psy10858        229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       229 QRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~  306 (457)
                      ||+.|||-|+..|+++++||||.|||...+..+.++++.+ ++-|.+++|+|||+..+.. ++|..+|++|++++.|-.+
T Consensus       158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD  237 (258)
T COG4107         158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD  237 (258)
T ss_pred             HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence            9999999999999999999999999999999999997665 4559999999999999986 8999999999999999999


Q ss_pred             hhhhcCCcccH
Q psy10858        307 GFKSKYSMPKL  317 (457)
Q Consensus       307 ~l~~~~~~~~l  317 (457)
                      .++.....++.
T Consensus       238 rvLDDP~hPYT  248 (258)
T COG4107         238 RVLDDPHHPYT  248 (258)
T ss_pred             ccccCCCCchH
Confidence            88877665543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.2e-36  Score=357.18  Aligned_cols=190  Identities=25%  Similarity=0.365  Sum_probs=159.4

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|             +||||+|++.+++. ||+
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~-Ti~  504 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPG-TIK  504 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCc-cHH
Confidence            4589999999999999999999999999999999999999999999976             49999999999875 999


Q ss_pred             HHHHHhhhhcCCCHHHHHHH-----HHHHHhHcCCC---CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQ-----MRKYSHVLKLP---NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP  255 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l~L~---~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp  255 (457)
                      ||+.|+...   +.....+.     +.+.++.+...   ..+.++.+|||||||||+||||++.+|+++||||||+|||+
T Consensus       505 eNI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~  581 (1490)
T TIGR01271       505 DNIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV  581 (1490)
T ss_pred             HHHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            999976421   22111111     12222222221   13556889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        256 LVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       256 ~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ..++++++. +..+. +|+|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus       582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~  637 (1490)
T TIGR01271       582 VTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK  637 (1490)
T ss_pred             HHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            999999985 55543 58999999999999988999999999999999999998753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.8e-36  Score=359.45  Aligned_cols=202  Identities=22%  Similarity=0.350  Sum_probs=170.2

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCccCCCCchhhhcC
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-GEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-G~I~i~G~~~~~~~~~~~r~  165 (457)
                      ..|+++|++++|+.. ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++ |+|.+             +.
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~  679 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG  679 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence            469999999999742 2579999999999999999999999999999999999999999 89974             35


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHH
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsL  233 (457)
                      +|+||+|++.+++. ||+||+.|+..   .++++.    .++++..+|       +.     ......+|||||||||+|
T Consensus       680 ~Iayv~Q~p~Lfng-TIreNI~fg~~---~d~e~y----~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL  751 (1622)
T PLN03130        680 TVAYVPQVSWIFNA-TVRDNILFGSP---FDPERY----ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM  751 (1622)
T ss_pred             eEEEEcCccccCCC-CHHHHHhCCCc---ccHHHH----HHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence            79999999999875 99999987643   233333    333333322       21     234566799999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+..+|+|+|||||||+||+...+++.+. +.... +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus       752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~  829 (1622)
T PLN03130        752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN  829 (1622)
T ss_pred             HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence            9999999999999999999999999988765 65443 58999999999999889999999999999999999998754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=274.78  Aligned_cols=199  Identities=23%  Similarity=0.336  Sum_probs=175.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCccCCCCchhhhcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI---SQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p---~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      ++.++||+.+.++  .-.|-|+||+|.+|||+.|+||+|||||||+.-+.|.+.+   -+|+++++++++....  ..++
T Consensus         2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP--a~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP--AAQR   77 (213)
T ss_pred             ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc--hhhh
Confidence            6789999988887  8899999999999999999999999999999999999876   4799999999886543  3468


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHh--hhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFF--GMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~--~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ++|++||++-||+.++|.+||.|.  +.++|   ...+..+..+++..+|.. .++.|.+||||||-||++-|+|+..|+
T Consensus        78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG---~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk  154 (213)
T COG4136          78 QIGILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK  154 (213)
T ss_pred             heeeeecccccccccccccceEEecCccccc---HHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence            899999999999999999999764  23443   234555777899999965 689999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      .++||||+|.||...|.++.+. ..+.+.-|.-.+++|||.+.+....||+-|
T Consensus       155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence            9999999999999999999999 777788899999999999998876777655

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1e-35  Score=352.32  Aligned_cols=190  Identities=28%  Similarity=0.419  Sum_probs=159.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+.             ++|||+||++.+++ .||+
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~-~Tv~  738 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMN-ATVR  738 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCC-CcHH
Confidence            679999999999999999999999999999999999999999999862             46999999999874 6999


Q ss_pred             HHHHHhhhhcCCCHHHHHH-----HHHHHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858        184 ETLNFFGMIYGMDESIWLF-----QMRKYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP  255 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~-----~~~~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp  255 (457)
                      ||+.++...   ..+...+     .+++.++.+  |+. ..++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus       739 enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~  815 (1560)
T PTZ00243        739 GNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA  815 (1560)
T ss_pred             HHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence            999875321   1111111     122334444  443 24778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        256 LVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       256 ~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ..++.+++. +... .+|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       816 ~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~  871 (1560)
T PTZ00243        816 HVGERVVEECFLGA-LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT  871 (1560)
T ss_pred             HHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            999998875 4333 358999999999999988999999999999999999998753

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.1e-35  Score=285.09  Aligned_cols=192  Identities=21%  Similarity=0.297  Sum_probs=139.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCceEEEEcC-------c---cCCCCc-hhhhcCcEEEEc
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLL-KAIVGLKNISQGEIWVLG-------G---HPASIY-HKTAGSKVGYMP  171 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLL-k~L~Gll~p~sG~I~i~G-------~---~~~~~~-~~~~r~~IGyvp  171 (457)
                      ..+|++|||+|++||++||+|+||||||||+ ..|.+     +|++.+.+       .   ...... ........++..
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI   82 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence            6799999999999999999999999999995 44432     34332210       0   000000 011112344555


Q ss_pred             CCCC--CCCCCCHH---HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--c
Q psy10858        172 QELA--MFGELTIK---ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--Q  242 (457)
Q Consensus       172 Q~~~--L~~~lTV~---EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~  242 (457)
                      |++.  +.+..+|.   +...++..++  ......++ .++++.+++..  .++++.+|||||||||+||+||+.+|  +
T Consensus        83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~  159 (226)
T cd03270          83 DQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV  159 (226)
T ss_pred             cCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC
Confidence            5442  33444544   3333322222  12222333 46788899953  68999999999999999999999998  5


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEec
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQD  303 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~g  303 (457)
                      +|||||||+|||+..++.++++++.++++|.|||++||+++++..|||+++|      ++|+|+++|
T Consensus       160 llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         160 LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            9999999999999999999999887777799999999999998779999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-36  Score=278.01  Aligned_cols=192  Identities=25%  Similarity=0.312  Sum_probs=168.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++++++|++.+.+.  .+++.++||++.+||++-|.|||||||||||++|+|+.+|++|+|++.|..+.... +...+.+
T Consensus         1 ~~L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l   77 (209)
T COG4133           1 MMLEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQAL   77 (209)
T ss_pred             CcchhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHH
Confidence            36788999999988  89999999999999999999999999999999999999999999999998775432 2234667


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      -|+--.+.+-.+|||+|||.|+..+++-.   ....+.++++.++|.. .|.++.+||-||||||+|||-.+..+++.||
T Consensus        78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL  154 (209)
T COG4133          78 LYLGHQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL  154 (209)
T ss_pred             HHhhccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence            78888889999999999999999888741   1234677888999965 7999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      ||||++||...+..+-.++..-..+|-.||++||..--+
T Consensus       155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence            999999999999999999777677888999999986544

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.5e-35  Score=267.45  Aligned_cols=209  Identities=21%  Similarity=0.239  Sum_probs=181.6

Q ss_pred             CceEEEeeEEEeC-----CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc--CC--CC
Q psy10858         88 EADEGKNTEKEEL-----KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PA--SI  158 (457)
Q Consensus        88 ~~Iei~nlsk~yg-----~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~--~~--~~  158 (457)
                      ..+.++|++|+|-     +-.-.+|+|+||+|+.|||++|=||||+||||+||+|-|-+.|++|+|++.-..  +.  ..
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a   82 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA   82 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence            4688999999983     223579999999999999999999999999999999999999999999985432  11  11


Q ss_pred             -ch---hhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHH
Q psy10858        159 -YH---KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       159 -~~---~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRls  232 (457)
                       ..   ...++.||||.|.....|..+..|.++-...-.|++.+....++..++.+++++.  .+-.|.++||||||||.
T Consensus        83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN  162 (235)
T COG4778          83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN  162 (235)
T ss_pred             ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence             11   2345679999999988999998888888877889999999999999999999975  47889999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeC
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYK  296 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~  296 (457)
                      |||+++.+-+||+|||||++||...|+.+.++|...+..|.++|=+-||-+.-+. |||++-|..
T Consensus       163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            9999999999999999999999999999999999988889999999999655455 899988753

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-35  Score=296.60  Aligned_cols=219  Identities=22%  Similarity=0.334  Sum_probs=184.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..+...++++.|... +++|+++||+++.|+.++++|++|+||||++++|..++.+++|.|.++|+++.......+|+-|
T Consensus       261 g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI  339 (497)
T COG5265         261 GAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI  339 (497)
T ss_pred             ceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence            358899999999753 7899999999999999999999999999999999999999999999999998776666788999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--HHhHc-CCCC-CCC----CCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVL-KLPN-LER----PVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--ll~~l-~L~~-~~~----~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |.+||+..||.+ |+..|+.|...-  .+.++..+.++.  +-..+ .+|. .+.    +.-.|||||||||+|||+++.
T Consensus       340 g~VPQDtvLFND-ti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk  416 (497)
T COG5265         340 GIVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK  416 (497)
T ss_pred             CcCcccceehhh-hHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence            999999999976 999999875321  223332222221  11111 2333 333    444699999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|+||+|||.||+||....+.+...++... .|+|-+++.|.+..+-.||.|++|++|+|++.|+.++++.+
T Consensus       417 ~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~  487 (497)
T COG5265         417 NPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA  487 (497)
T ss_pred             CCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence            999999999999999999999999988864 68999999999999999999999999999999999999876

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1e-33  Score=279.63  Aligned_cols=196  Identities=23%  Similarity=0.324  Sum_probs=157.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--------cC--CCCCce-----------EEEEcCccCCCCchhh
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV--------GL--KNISQG-----------EIWVLGGHPASIYHKT  162 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~--------Gl--l~p~sG-----------~I~i~G~~~~~~~~~~  162 (457)
                      ...|+|||++|+.|.+++|.|+||||||||++.+.        +.  ..|..+           -|.++..++....+..
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~   87 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN   87 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence            34599999999999999999999999999999662        11  012111           3566665554321100


Q ss_pred             ----------hc----------------CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-
Q psy10858        163 ----------AG----------------SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-  215 (457)
Q Consensus       163 ----------~r----------------~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-  215 (457)
                                .|                ..+.|..++...+.+|||.|++.|+..+.+      ..+..++++.++|.. 
T Consensus        88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l  161 (261)
T cd03271          88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYI  161 (261)
T ss_pred             HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchh
Confidence                      00                125677777777789999999999876542      234567889999964 


Q ss_pred             -CCCCCCCCChhHHHHHHHHHHhhcC---CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858        216 -LERPVKYLSGGQKRRLSFTIAILHK---PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV  291 (457)
Q Consensus       216 -~~~~~~~LSGGqkQRlsLA~ALl~~---P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri  291 (457)
                       +++++.+||||||||++||+||+.+   |+++||||||+|||+..++.++++++.++++|.|||++||++++++.||++
T Consensus       162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~i  241 (261)
T cd03271         162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI  241 (261)
T ss_pred             hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence             6899999999999999999999996   799999999999999999999999888877899999999999999889999


Q ss_pred             EEE------eCCeEEEecCh
Q psy10858        292 AFL------YKGRIIAQDSP  305 (457)
Q Consensus       292 ~im------~~GkI~~~gs~  305 (457)
                      +.|      ++|+|++.|+|
T Consensus       242 i~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         242 IDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEecCCcCCCCCEEEEeCCC
Confidence            999      89999999975

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054|consensus

Probab=100.00  E-value=8.8e-34  Score=325.48  Aligned_cols=218  Identities=24%  Similarity=0.329  Sum_probs=187.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      -.|+++|++.+|..+-..||+||||+|++||-+||+|..|||||||+++|..+..|.+|+|.|||.++.+.....+|+++
T Consensus      1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred             CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence            36999999999987556899999999999999999999999999999999999999999999999999988878899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHcCCCC-CC----CCCCCCChhHHHHHHHHHHh
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVLKLPN-LE----RPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l~L~~-~~----~~~~~LSGGqkQRlsLA~AL  237 (457)
                      +.+||+|.||.. |+|.||.=+..   .+++++.+..++     ..+  .++. +|    .-..++|-||||-|+|||||
T Consensus      1217 sIIPQdPvLFsG-TvR~NLDPf~e---~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSG-TVRFNLDPFDE---YSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred             eeeCCCCceecC-ccccccCcccc---cCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence            999999999976 99999963322   234444433322     111  1221 33    34567999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      +++.+||+|||.|+++|+.+-..|-+.|+..- .++|||.+-|.++.+..||||+||++|+|++.|+|++|+++.
T Consensus      1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred             hccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC
Confidence            99999999999999999999998888887643 479999999999999999999999999999999999999764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=4.2e-34  Score=252.34  Aligned_cols=132  Identities=34%  Similarity=0.556  Sum_probs=116.2

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      |+||||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++.+||.|| 
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            7899999999999999999999999999999999999999999999988765555667899999999999999999999 


Q ss_pred             HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-----CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858        187 NFFGMIYGMDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV  251 (457)
Q Consensus       187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs  251 (457)
                                  ....++.++++.+++..     .++.+.+||+||||||+||+||+++|++|||||||+
T Consensus        80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                        22344666777777633     345559999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=294.84  Aligned_cols=200  Identities=25%  Similarity=0.300  Sum_probs=170.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+++++|+++.|++. +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+ |..          -+
T Consensus       319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~-g~~----------v~  386 (530)
T COG0488         319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GET----------VK  386 (530)
T ss_pred             CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEe-CCc----------eE
Confidence            5689999999999763 68999999999999999999999999999999999999999999987 321          36


Q ss_pred             EEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +||..|+. .+.++.|+.|++.-...  +    .....+..++..|++..  ..++++.||||||.||.||+.++.+|.+
T Consensus       387 igyf~Q~~~~l~~~~t~~d~l~~~~~--~----~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv  460 (530)
T COG0488         387 IGYFDQHRDELDPDKTVLEELSEGFP--D----GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL  460 (530)
T ss_pred             EEEEEehhhhcCccCcHHHHHHhhCc--c----ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE
Confidence            99999998 44577899998864321  1    11455778899999953  6889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEe-cChhhh
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ-DSPDGF  308 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~-gs~~~l  308 (457)
                      |||||||+.||..++..+-+.+...   .-|||+||||-..++. |++++.+.+ ++... |..++.
T Consensus       461 LiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y  523 (530)
T COG0488         461 LLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY  523 (530)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence            9999999999999999999887664   4599999999999986 899999988 55444 555443

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-32  Score=289.11  Aligned_cols=216  Identities=21%  Similarity=0.388  Sum_probs=186.8

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhc
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAG  164 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r  164 (457)
                      .++.+++++++..-      .++|+||++.+|||+||-|-=|||+|-|+++|.|..++++|+|.++|+++...+ ....+
T Consensus       260 ~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~  333 (500)
T COG1129         260 GEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK  333 (500)
T ss_pred             CCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence            35678888887542      378999999999999999999999999999999999999999999999876544 33567


Q ss_pred             CcEEEEcCCC---CCCCCCCHHHHHHHhhh--hc---CCCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHHH
Q psy10858        165 SKVGYMPQEL---AMFGELTIKETLNFFGM--IY---GMDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       165 ~~IGyvpQ~~---~L~~~lTV~EnL~~~~~--l~---g~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsLA  234 (457)
                      ..|+|||.+.   .++..++|.+|+.+...  ..   -++....++.++++.+.+++.  ..+.++.+||||+||||.||
T Consensus       334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla  413 (500)
T COG1129         334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA  413 (500)
T ss_pred             cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence            7899999875   68999999999987621  11   145555666788888899884  46889999999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~  307 (457)
                      |.|..+|++|||||||.|+|..++.+|+++++.+.++|++||++|-+++|+. .||||++|++|+++.+-+.++
T Consensus       414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence            9999999999999999999999999999999999999999999999999996 599999999999998766554

>KOG0054|consensus

Probab=100.00  E-value=4.1e-32  Score=311.76  Aligned_cols=205  Identities=27%  Similarity=0.397  Sum_probs=175.3

Q ss_pred             cccCceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhh
Q psy10858         85 EEEEADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        85 ~~~~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      ..+.+++++|.+++.+.. ....|+||||+|++|+.+|++|+-|||||+||.+|.|.++..+|++.++|.          
T Consensus       514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------  583 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------  583 (1381)
T ss_pred             CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------
Confidence            345689999999998752 245899999999999999999999999999999999999999999999772          


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHH
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRL  231 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRl  231 (457)
                         ++||||.+.+++. ||+||+.|+..+   +++    +.++.++...|       +.     ...+.-+||||||||+
T Consensus       584 ---iaYv~Q~pWI~ng-TvreNILFG~~~---d~~----rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRI  652 (1381)
T KOG0054|consen  584 ---VAYVPQQPWIQNG-TVRENILFGSPY---DEE----RYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRI  652 (1381)
T ss_pred             ---EEEeccccHhhCC-cHHHhhhcCccc---cHH----HHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHH
Confidence               8999999999865 999999875432   232    33333333333       21     2467889999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +||||+-++.+|++||-|+|++|....+++++- +... -+++|+|++||.++....||.|++|++|+|.+.|+.+++.+
T Consensus       653 sLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  653 SLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             HHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence            999999999999999999999999999999998 7544 45899999999999999999999999999999999999985


Q ss_pred             c
Q psy10858        311 K  311 (457)
Q Consensus       311 ~  311 (457)
                      .
T Consensus       732 ~  732 (1381)
T KOG0054|consen  732 S  732 (1381)
T ss_pred             c
Confidence            4

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=5.5e-33  Score=263.36  Aligned_cols=164  Identities=14%  Similarity=0.160  Sum_probs=132.8

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---------eEEEEcCccCCCCchhhhcCcEEEEcCCCCCCC
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ---------GEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG  178 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s---------G~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~  178 (457)
                      +++++++++| +++|+||||||||||+++|+|++++..         |++.+.|.+...   ...+++|||+||++..+ 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~-   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR-   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence            5799999999 999999999999999999999987653         357666665432   12346899999999776 


Q ss_pred             CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCC
Q psy10858        179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVD  254 (457)
Q Consensus       179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLD  254 (457)
                               |     +...   .+++.++++.  ....++++.+||||||||++||+||+    .+|+++||||||+|||
T Consensus        89 ---------~-----~~~~---~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD  149 (197)
T cd03278          89 ---------Y-----SIIS---QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD  149 (197)
T ss_pred             ---------e-----eEEe---hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence                     1     1100   2345555555  22367889999999999999999997    4679999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        255 PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       255 p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      +..+..++++++.+.+ +.|||++||++++++.||+++.|..
T Consensus       150 ~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         150 DANVERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             HHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence            9999999999888754 7899999999999878999998874

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.98  E-value=2.3e-32  Score=264.45  Aligned_cols=190  Identities=19%  Similarity=0.223  Sum_probs=139.4

Q ss_pred             EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------cCCCCCce--------EEEEcC
Q psy10858         97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----------------GLKNISQG--------EIWVLG  152 (457)
Q Consensus        97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----------------Gll~p~sG--------~I~i~G  152 (457)
                      |+|++  ..++++++     |++++|+|||||||||||++|+                +++.+++|        +|.+++
T Consensus        10 ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~   82 (243)
T cd03272          10 KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDN   82 (243)
T ss_pred             cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEc
Confidence            45776  77888887     8999999999999999999998                45556666        666655


Q ss_pred             ccCC---CCchhhhcCcEEEEcCCCCCCCC-CCHHHHHHHhhhhcCCCHHHHH--HHHHHHHhHcCCC-CCCCCCCCCCh
Q psy10858        153 GHPA---SIYHKTAGSKVGYMPQELAMFGE-LTIKETLNFFGMIYGMDESIWL--FQMRKYSHVLKLP-NLERPVKYLSG  225 (457)
Q Consensus       153 ~~~~---~~~~~~~r~~IGyvpQ~~~L~~~-lTV~EnL~~~~~l~g~~~~~~~--~~~~~ll~~l~L~-~~~~~~~~LSG  225 (457)
                      .+..   .......++.+||++|+..+++. +|..|...+... .++......  ....++.+.+++. ..++++.+|||
T Consensus        83 ~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~  161 (243)
T cd03272          83 SDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSG  161 (243)
T ss_pred             CCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCchHHhhhccccccccccccCH
Confidence            3211   11112345679999999988874 677666555443 355432100  0011223334443 35788999999


Q ss_pred             hHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe
Q psy10858        226 GQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY  295 (457)
Q Consensus       226 GqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~  295 (457)
                      |||||++||+||+.    +|+++||||||+||||.+++.+++.++.+.+ +.+||++||+.+....||++++|.
T Consensus       162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l~  234 (243)
T cd03272         162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGVK  234 (243)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEE
Confidence            99999999999973    5899999999999999999999999877654 889999999866555699999885

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=3.9e-33  Score=267.33  Aligned_cols=184  Identities=18%  Similarity=0.199  Sum_probs=144.8

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++|.. +|++  ..+++++++     +++||+||||||||||+++|.          +++|.+..    ...++++||
T Consensus         6 l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~~~i~~   63 (212)
T cd03274           6 LVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQKKLSD   63 (212)
T ss_pred             EEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----HhhhhhHHH
Confidence            6677766 7887  889999998     899999999999999999997          34454431    112357999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhc--------CCCHHHHHH--HHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIY--------GMDESIWLF--QMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~--------g~~~~~~~~--~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ++|+..+++.+|+.+++.++...+        |...+....  ...++++.++++. .++++..||+|||||++||+|++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~  143 (212)
T cd03274          64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA  143 (212)
T ss_pred             HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence            999999999999999888776543        332211110  0144556777754 67889999999999999999997


Q ss_pred             c----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        239 H----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       239 ~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      .    .|++++|||||+||||.+++.+++.++.+. ++.|+|++||+.+..+.|||+++|..
T Consensus       144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence            4    479999999999999999999999988764 56789999999655567999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.2e-32  Score=254.40  Aligned_cols=219  Identities=21%  Similarity=0.339  Sum_probs=186.3

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ++.++++...-      -|-.+|..+..||++-++||||||||||+-.++|+++ -+|+|.+.|.++......+..+.-+
T Consensus         3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA   75 (248)
T COG4138           3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA   75 (248)
T ss_pred             eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence            56677766543      2667999999999999999999999999999999985 5899999999987655445566778


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc-----CC-
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH-----KP-  241 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~-----~P-  241 (457)
                      |+.|+..-...|.|+++|.++     .+.+.....+.++...+++.+ +.+.+++|||||-|||-+|...++     || 
T Consensus        76 YLsQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~  150 (248)
T COG4138          76 YLSQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA  150 (248)
T ss_pred             HHhhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence            999987766678999988764     345666777888888999954 789999999999999999998875     33 


Q ss_pred             -ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH-hccCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        242 -QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       242 -~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea-~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                       ++||||||.++||...+..+-.++..++..|.+|||++||++-. +.+|++++++.|++++.|..+++++.   +.+..
T Consensus       151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~---~vL~q  227 (248)
T COG4138         151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP---PVLAQ  227 (248)
T ss_pred             ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh---HHHHH
Confidence             79999999999999988888888988899999999999999986 56999999999999999999998864   56777


Q ss_pred             HHH
Q psy10858        320 VFY  322 (457)
Q Consensus       320 ~f~  322 (457)
                      +|.
T Consensus       228 ~fg  230 (248)
T COG4138         228 AYG  230 (248)
T ss_pred             Hhc
Confidence            775

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.97  E-value=2.5e-31  Score=253.98  Aligned_cols=193  Identities=18%  Similarity=0.137  Sum_probs=139.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVK-RREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~-~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .|+++|.. +|.+  .   ++|+|+.. +|++++|+|||||||||||++|++.+ .+..+..... ..............
T Consensus         5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~   77 (213)
T cd03279           5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE   77 (213)
T ss_pred             EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence            57888888 6655  2   56677654 59999999999999999999999643 4444444332 11111111223457


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc------
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH------  239 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~------  239 (457)
                      |++++|+....  .++..       ..+++.+...+.+  .+...++.. .++++.+||||||||++||+||+.      
T Consensus        78 v~~~f~~~~~~--~~~~r-------~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~  146 (213)
T cd03279          78 VSFTFQLGGKK--YRVER-------SRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQN  146 (213)
T ss_pred             EEEEEEECCeE--EEEEE-------ecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhh
Confidence            99999987321  12211       1255554333222  133333432 588999999999999999999985      


Q ss_pred             ----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        240 ----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       240 ----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                          +|+++||||||+|||+..++.++++++.++++|.|||++||+++++.. ||++++|++|.+
T Consensus       147 ~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         147 RGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence                678999999999999999999999988877679999999999999876 899999998853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0065|consensus

Probab=99.97  E-value=7.7e-31  Score=296.18  Aligned_cols=214  Identities=26%  Similarity=0.362  Sum_probs=185.3

Q ss_pred             CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858        103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       103 ~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      ++.+|+||+=-+++|..+||+|+|||||||||++|+|...  ..+|+|+++|.+..+   +..+|.+|||-|++.-.+++
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~  879 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL  879 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence            4889999999999999999999999999999999999864  467999999987653   34678999999999777999


Q ss_pred             CHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC-CCCCCCC----CChhHHHHHHHHHHhhcCC-ceEEEeCCCC
Q psy10858        181 TIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN-LERPVKY----LSGGQKRRLSFTIAILHKP-QLIILDEPCV  251 (457)
Q Consensus       181 TV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~----LSGGqkQRlsLA~ALl~~P-~lLILDEPTs  251 (457)
                      ||+|-|.|.|.++   ..+.++..+.++++++.++|+. .|..++.    ||.+||+||.||.-|+.+| .||+||||||
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS  959 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS  959 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence            9999999999886   3556666688999999999975 5666666    9999999999999999999 9999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH-H-hccCeEEEEe-CCeEEEecChhhhhhcCCcccHHHHHHhh
Q psy10858        252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE-A-NDASEVAFLY-KGRIIAQDSPDGFKSKYSMPKLSDVFYKI  324 (457)
Q Consensus       252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e-a-~~~dri~im~-~GkI~~~gs~~~l~~~~~~~~l~~~f~~~  324 (457)
                      |||..+...++++++.+.+.|.||+.|-|...- + ++.||+++|+ .|+.+..|++.+-     ...+-+.|...
T Consensus       960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~-----s~~li~YFes~ 1030 (1391)
T KOG0065|consen  960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN-----SSKLIEYFESI 1030 (1391)
T ss_pred             CccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc-----cHHHHHHHHhc
Confidence            999999999999999999999999999999874 3 5689999997 6899999998652     23455555543

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=4.4e-31  Score=258.10  Aligned_cols=197  Identities=15%  Similarity=0.155  Sum_probs=146.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCc-cCCCCc--hhhhcC
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGG-HPASIY--HKTAGS  165 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~-~~~~~~--~~~~r~  165 (457)
                      +.++|. ++|..  ..++.++    . ..+++|+||||||||||+++|+|++.++ .|++.+.|. ++....  ....+.
T Consensus         6 ~~~~~f-~~~~~--~~~~~~~----~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~   77 (251)
T cd03273           6 IILDGF-KSYAT--RTVISGF----D-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKA   77 (251)
T ss_pred             EEEeCc-cccCc--CEeeccC----C-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEE
Confidence            455555 55654  3332222    2 5699999999999999999999999886 468887765 322111  112245


Q ss_pred             cEEEEcCCC---------CCCCCCCHHHHHHHhhhhcC-C-CHHHHHHHHHHHHhHcCCC--------------------
Q psy10858        166 KVGYMPQEL---------AMFGELTIKETLNFFGMIYG-M-DESIWLFQMRKYSHVLKLP--------------------  214 (457)
Q Consensus       166 ~IGyvpQ~~---------~L~~~lTV~EnL~~~~~l~g-~-~~~~~~~~~~~ll~~l~L~--------------------  214 (457)
                      +|++++|++         .+.+.+||.+++........ + .+....+++.++++.+++.                    
T Consensus        78 ~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~  157 (251)
T cd03273          78 SVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG  157 (251)
T ss_pred             EEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence            899999985         45667899888865432211 1 1223446777888888884                    


Q ss_pred             C-CCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccC
Q psy10858        215 N-LERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS  289 (457)
Q Consensus       215 ~-~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~d  289 (457)
                      . .++++.+||+|||||++||+||+    .+|+++||||||+|||+..++.+++.++.+. +|.|||++||+.+..+.||
T Consensus       158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d  236 (251)
T cd03273         158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNAN  236 (251)
T ss_pred             HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCC
Confidence            1 35789999999999999999998    5789999999999999999999999987764 5899999999966667799


Q ss_pred             eEEEEe
Q psy10858        290 EVAFLY  295 (457)
Q Consensus       290 ri~im~  295 (457)
                      +++-+.
T Consensus       237 ~v~~~~  242 (251)
T cd03273         237 VLFRTR  242 (251)
T ss_pred             EEEEEE
Confidence            998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.97  E-value=5.4e-30  Score=244.03  Aligned_cols=165  Identities=17%  Similarity=0.122  Sum_probs=130.0

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHH----cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC-----CCCCCC
Q psy10858        110 CSLVVKRREFFVLLGASSAGKTTLLKAIV----GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-----AMFGEL  180 (457)
Q Consensus       110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~-----~L~~~l  180 (457)
                      .++++.+| +++|+||||||||||+++|.    |..+|++|.+..+...+..   ...+..|++++|++     .....+
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            44566677 99999999999999999994    9999988877622222221   12346799999988     344456


Q ss_pred             CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHH------HHHHHHhhcCCceEEEeCCCCCCC
Q psy10858        181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR------LSFTIAILHKPQLIILDEPCVGVD  254 (457)
Q Consensus       181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQR------lsLA~ALl~~P~lLILDEPTsGLD  254 (457)
                      |+.+|+.+.      +..+    +.+.+        ++.+.+||+||+||      +++|+|++.+|+++||||||++||
T Consensus        92 ~~~~~~~~~------~~~~----~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD  153 (204)
T cd03240          92 AILENVIFC------HQGE----SNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD  153 (204)
T ss_pred             hHhhceeee------chHH----HHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccC
Confidence            888888542      1111    22222        67889999999996      789999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        255 PLVRK-RMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       255 p~~r~-~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      +..++ .+++++..++++ |.|||++||+++.+..||+++.|.+
T Consensus       154 ~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         154 EENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             HHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence            99999 999998777665 8999999999998878999998864

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.96  E-value=3.8e-29  Score=282.53  Aligned_cols=212  Identities=23%  Similarity=0.333  Sum_probs=161.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---------cCCCCCce------------
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV---------GLKNISQG------------  146 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~---------Gll~p~sG------------  146 (457)
                      ..|+++|++.       ..|+|+||+|++||++||.|+||||||||++.+.         +...+..+            
T Consensus       613 ~~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  685 (943)
T PRK00349        613 KFLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK  685 (943)
T ss_pred             ceEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence            4688888862       2499999999999999999999999999999763         21111111            


Q ss_pred             EEEEcCccCCCCc--------------hhhh-----cCcEEEEcCCCCCCC-----------------------------
Q psy10858        147 EIWVLGGHPASIY--------------HKTA-----GSKVGYMPQELAMFG-----------------------------  178 (457)
Q Consensus       147 ~I~i~G~~~~~~~--------------~~~~-----r~~IGyvpQ~~~L~~-----------------------------  178 (457)
                      .|.|+-.++....              +...     .+..||.++.+++..                             
T Consensus       686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~  765 (943)
T PRK00349        686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCD  765 (943)
T ss_pred             eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCc
Confidence            1222222211000              0000     123455555544433                             


Q ss_pred             -------------------------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858        179 -------------------------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL  231 (457)
Q Consensus       179 -------------------------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl  231 (457)
                                               +|||.|++.|+..+.++      .+..++++.++|..  +++++.+||||||||+
T Consensus       766 ~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl  839 (943)
T PRK00349        766 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRV  839 (943)
T ss_pred             cccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHH
Confidence                                     37899999887665432      12356788899964  6899999999999999


Q ss_pred             HHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEe
Q psy10858        232 SFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQ  302 (457)
Q Consensus       232 sLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~  302 (457)
                      .||+||+.+|   +++||||||+|||+..++.++++++.++++|.|||++||+++++..||+|+.|      ++|+|++.
T Consensus       840 ~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~  919 (943)
T PRK00349        840 KLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVAT  919 (943)
T ss_pred             HHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence            9999999999   99999999999999999999999888877899999999999999889999999      79999999


Q ss_pred             cChhhhhhcC
Q psy10858        303 DSPDGFKSKY  312 (457)
Q Consensus       303 gs~~~l~~~~  312 (457)
                      |+++++....
T Consensus       920 Gt~~el~~~~  929 (943)
T PRK00349        920 GTPEEVAKVE  929 (943)
T ss_pred             CCHHHHHhCc
Confidence            9999997653

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=9e-29  Score=257.47  Aligned_cols=221  Identities=20%  Similarity=0.366  Sum_probs=193.6

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC-CCCc-hhhh
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIY-HKTA  163 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~-~~~~-~~~~  163 (457)
                      .++.+++++|+..-..+ ..++++|||+|.+|||+||.|-.|-|-+.|+..|+|+.++.+|+|.++|+++ .... ....
T Consensus       254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r  332 (501)
T COG3845         254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR  332 (501)
T ss_pred             CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence            46789999999987653 5789999999999999999999999999999999999999899999999987 3322 2344


Q ss_pred             cCcEEEEcCCC---CCCCCCCHHHHHHHhhhh------cC-CCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHH
Q psy10858        164 GSKVGYMPQEL---AMFGELTIKETLNFFGMI------YG-MDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRL  231 (457)
Q Consensus       164 r~~IGyvpQ~~---~L~~~lTV~EnL~~~~~l------~g-~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRl  231 (457)
                      +..+||+|.+.   .+.+++|+.||+.+...-      ++ +....+.+...++.+.++..  ..+.++.+||||++||+
T Consensus       333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~  412 (501)
T COG3845         333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL  412 (501)
T ss_pred             hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence            57899999986   588899999999764321      12 45677888889999999984  36778999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~  307 (457)
                      -+||-|..+|++||+.+||.|||..+.+.+.+.+...++.|++|+++|-|++|+.. ||||++|.+|+++...++++
T Consensus       413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            99999999999999999999999999999999987888999999999999999965 99999999999998888765

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.5e-30  Score=258.68  Aligned_cols=202  Identities=22%  Similarity=0.294  Sum_probs=171.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .-||++|+.+.|... ..-|..||++|++||++-|+|.|||||||++++|+|+.+|++|+|+++|+++.....+..|+-+
T Consensus       321 ~~lelrnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf  399 (546)
T COG4615         321 KTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF  399 (546)
T ss_pred             cceeeeeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence            369999999999873 2568999999999999999999999999999999999999999999999999877777778778


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC----CCC--CCCCCChhHHHHHHHHHHhhcCC
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN----LER--PVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~----~~~--~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +-+|.|..||+.+-..|+            +...+.++.+++++.+.+    .|.  ..-.||.|||+|+++-.|++-+-
T Consensus       400 SavFsDyhLF~~ll~~e~------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR  467 (546)
T COG4615         400 SAVFSDYHLFDQLLGPEG------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER  467 (546)
T ss_pred             HHHhhhHhhhHhhhCCcc------------CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence            888888888775422221            112334556666666632    233  34579999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEe
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ  302 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~  302 (457)
                      +|+++||=-+--||.-|+.+++. +-.++++|+|||.+|||-..-..|||++.|.+|++++.
T Consensus       468 ~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         468 DILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             CeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence            99999999999999999999998 77888899999999999877788999999999999765

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.96  E-value=7e-28  Score=283.18  Aligned_cols=215  Identities=22%  Similarity=0.274  Sum_probs=162.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHHcCCCCCce----E----EEEc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLK---------AIVGLKNISQG----E----IWVL  151 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk---------~L~Gll~p~sG----~----I~i~  151 (457)
                      .+++++++.       ..|+|+||+|++||+++|.|+||||||||++         .|.|...+..+    .    |.|+
T Consensus       600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id  672 (1809)
T PRK00635        600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT  672 (1809)
T ss_pred             eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence            578888762       2599999999999999999999999999999         66665433111    1    2222


Q ss_pred             CccCCCCch----h------h-------------------------------hcCcEEE----EcCCC------------
Q psy10858        152 GGHPASIYH----K------T-------------------------------AGSKVGY----MPQEL------------  174 (457)
Q Consensus       152 G~~~~~~~~----~------~-------------------------------~r~~IGy----vpQ~~------------  174 (457)
                      -.++.....    .      .                               ..+.+|+    |+...            
T Consensus       673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~  752 (1809)
T PRK00635        673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL  752 (1809)
T ss_pred             CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence            222211000    0      0                               0111222    22111            


Q ss_pred             -----CCCCCCCHHHHHHHhhh---hcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhh---cCC
Q psy10858        175 -----AMFGELTIKETLNFFGM---IYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAIL---HKP  241 (457)
Q Consensus       175 -----~L~~~lTV~EnL~~~~~---l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl---~~P  241 (457)
                           ..|..+||.|+|.+...   .+..+.++..+++ ++++.++|..  +++++.+|||||||||+||+||+   .+|
T Consensus       753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P  831 (1809)
T PRK00635        753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKP  831 (1809)
T ss_pred             HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCC
Confidence                 25677899999987644   2233444556666 4788899964  58999999999999999999997   699


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe------CCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY------KGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~------~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+..++.++++++.++++|.|||++||+++++..||++++|.      +|++++.|+++++...
T Consensus       832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~  907 (1809)
T PRK00635        832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIHL  907 (1809)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHhc
Confidence            999999999999999999999998888888999999999999996699999996      8999999999998763

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=5.3e-27  Score=264.77  Aligned_cols=124  Identities=26%  Similarity=0.424  Sum_probs=107.3

Q ss_pred             CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhc---CCceEEEeCCCCCC
Q psy10858        179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILH---KPQLIILDEPCVGV  253 (457)
Q Consensus       179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~---~P~lLILDEPTsGL  253 (457)
                      +|||.|.+.|+..+.++.      +..++++.++|..  +++++.+|||||+|||.||+||+.   +|+++||||||+||
T Consensus       789 ~~tv~e~~~f~~~~~~i~------~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL  862 (924)
T TIGR00630       789 DMTVEEAYEFFEAVPSIS------RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL  862 (924)
T ss_pred             CCcHHHHHHHHHhccchh------HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence            367777777766543321      2346778899964  689999999999999999999997   59999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhh
Q psy10858        254 DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGF  308 (457)
Q Consensus       254 Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l  308 (457)
                      |+..++.++++++.++++|.|||++||+++++..||++++|      ++|+|++.|+++++
T Consensus       863 D~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       863 HFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999999999888877899999999999999889999999      79999999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1.8e-27  Score=225.87  Aligned_cols=173  Identities=18%  Similarity=0.143  Sum_probs=127.1

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc---cCCCCchhhhcCcEEEEcCCCCCCCCCC
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASIYHKTAGSKVGYMPQELAMFGELT  181 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~---~~~~~~~~~~r~~IGyvpQ~~~L~~~lT  181 (457)
                      ..++++++++.+| +.+|+||||||||||+.+|...+..+... ...|.   +....  ......|.+.+|+..++++  
T Consensus        10 r~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~-~~r~~~~~~~i~~--~~~~~~i~~~~~~~~~~~~--   83 (198)
T cd03276          10 MCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASD-TNRGSSLKDLIKD--GESSAKITVTLKNQGLDAN--   83 (198)
T ss_pred             cceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccc-ccccccHHHHhhC--CCCeEEEEEEEEcCCccCC--
Confidence            3467888898888 88999999999999999998544332210 11122   11111  1123568899998776651  


Q ss_pred             HHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh----hcCCceEEEeCCCCCCCHHH
Q psy10858        182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI----LHKPQLIILDEPCVGVDPLV  257 (457)
Q Consensus       182 V~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL----l~~P~lLILDEPTsGLDp~~  257 (457)
                               ...++    .+.++.++++.  -...++++++||+|||||++||+||    +.+|+++||||||+|||+..
T Consensus        84 ---------~~~~~----~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~  148 (198)
T cd03276          84 ---------PLCVL----SQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN  148 (198)
T ss_pred             ---------cCCHH----HHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence                     11111    13345555555  2236889999999999999999999    58999999999999999999


Q ss_pred             HHHHHHHHHHHHhC---CcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858        258 RKRMWDLLQVFVGK---GRTVIMTTQYIEEANDASEVAFLYKGR  298 (457)
Q Consensus       258 r~~i~~~i~~~~~~---g~TIIisTH~~~ea~~~dri~im~~Gk  298 (457)
                      +..+++++....++   +.|||++||+++++..+|||.+|+.++
T Consensus       149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence            99999997665432   469999999999998889999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0927|consensus

Probab=99.94  E-value=1.2e-27  Score=250.52  Aligned_cols=201  Identities=20%  Similarity=0.215  Sum_probs=162.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .+.+.++|+++.|.++ -.++++++|.|..++.+++|||||||||||||+++|.+.|+.|.|.-.-           ..+
T Consensus       387 ~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~  454 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNK  454 (614)
T ss_pred             CCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------ccc
Confidence            5789999999999873 3789999999999999999999999999999999999999999886421           123


Q ss_pred             EEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        167 VGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       167 IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +++.-|+.  .+.-+.++.|++.   ..+.  .....+.+..++.++||. . .+.++++||+|||+||.+|++++..|.
T Consensus       455 ~~~y~Qh~~e~ldl~~s~le~~~---~~~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~  529 (614)
T KOG0927|consen  455 LPRYNQHLAEQLDLDKSSLEFMM---PKFP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH  529 (614)
T ss_pred             chhhhhhhHhhcCcchhHHHHHH---Hhcc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence            55556654  3444556766653   2222  123345677889999996 3 578999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDG  307 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~  307 (457)
                      +|+|||||+|||......+-+.|...   .-+||++|||+..+.+ +++|++..+|.+. ..|+...
T Consensus       530 lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~  593 (614)
T KOG0927|consen  530 LLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI  593 (614)
T ss_pred             EEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence            99999999999999999988888664   4579999999999976 8999999988874 4455443

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=4.8e-27  Score=229.45  Aligned_cols=194  Identities=16%  Similarity=0.083  Sum_probs=128.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc-CCCCc------hhh
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-PASIY------HKT  162 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~-~~~~~------~~~  162 (457)
                      |+++|. ++|.+  ...     |...++ +++|+||||||||||+.+|.+++.++.|++...+.. .....      ...
T Consensus         4 i~l~nf-~~~~~--~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~   74 (247)
T cd03275           4 LELENF-KSYKG--RHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS   74 (247)
T ss_pred             EEEECc-cccCC--Cee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence            567775 66654  222     333344 999999999999999999999998888877654321 11100      011


Q ss_pred             hcCcEEEEcCCCCC-CCCCCHHHHH-HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-----------------------CC
Q psy10858        163 AGSKVGYMPQELAM-FGELTIKETL-NFFGMIYGMDESIWLFQMRKYSHVLKLPN-----------------------LE  217 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L-~~~lTV~EnL-~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-----------------------~~  217 (457)
                      ..-.+.|..|+... ....++.+.. .++..-...+    .+.++++++.+++..                       .+
T Consensus        75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~  150 (247)
T cd03275          75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRF  150 (247)
T ss_pred             EEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhh
Confidence            22234454454321 1111111111 1111111122    223445666666631                       12


Q ss_pred             CCCCCCChhHHHHHHHHHHhhcC----CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE
Q psy10858        218 RPVKYLSGGQKRRLSFTIAILHK----PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF  293 (457)
Q Consensus       218 ~~~~~LSGGqkQRlsLA~ALl~~----P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i  293 (457)
                      +++.+||+|||||++||+|++.+    |+++||||||+|||+..+..+.+.+..+.++|.|||++||+.+.+..|||+++
T Consensus       151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~  230 (247)
T cd03275         151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVG  230 (247)
T ss_pred             hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEE
Confidence            34589999999999999999865    89999999999999999999999988877679999999999887778999988


Q ss_pred             EeC
Q psy10858        294 LYK  296 (457)
Q Consensus       294 m~~  296 (457)
                      |..
T Consensus       231 ~~~  233 (247)
T cd03275         231 VYR  233 (247)
T ss_pred             EEe
Confidence            863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=2e-26  Score=218.46  Aligned_cols=234  Identities=17%  Similarity=0.216  Sum_probs=180.0

Q ss_pred             CceEEEeeEEEeCC--CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCccCCCCchh
Q psy10858         88 EADEGKNTEKEELK--PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI----SQGEIWVLGGHPASIYHK  161 (457)
Q Consensus        88 ~~Iei~nlsk~yg~--~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p----~sG~I~i~G~~~~~~~~~  161 (457)
                      +.+.++|++..+..  +...||++||+++.+|||-||+|.+|||||-..|.|+|..+-    +.-+..+++.++-...+.
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr   81 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence            35678888887742  237899999999999999999999999999999999999752    344455555554433332


Q ss_pred             h----hcCcEEEEcCCCC--CCCCCCHHHHHHH--hhh-hcCCCH---HHHHHHHHHHHhHcCCCC----CCCCCCCCCh
Q psy10858        162 T----AGSKVGYMPQELA--MFGELTIKETLNF--FGM-IYGMDE---SIWLFQMRKYSHVLKLPN----LERPVKYLSG  225 (457)
Q Consensus       162 ~----~r~~IGyvpQ~~~--L~~~lTV~EnL~~--~~~-l~g~~~---~~~~~~~~~ll~~l~L~~----~~~~~~~LSG  225 (457)
                      .    ..+.|+++||+|.  |.+.-+|-..|.-  ..+ +.|.-.   ...+.++-+++..+|+.+    ...++.+|--
T Consensus        82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe  161 (330)
T COG4170          82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE  161 (330)
T ss_pred             HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence            2    3456889999995  5554444333311  111 111111   123455678889999953    3579999999


Q ss_pred             hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEec
Q psy10858        226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQD  303 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~g  303 (457)
                      |+-|||+||.|++.+|++||.||||+.+||..+.+++.++..+. .+|+||++++||+..+.. ||++-+|.-|+-++++
T Consensus       162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa  241 (330)
T COG4170         162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESA  241 (330)
T ss_pred             CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccccc
Confidence            99999999999999999999999999999999999999976654 458999999999999865 9999999999999999


Q ss_pred             ChhhhhhcCCcccHHHHH
Q psy10858        304 SPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       304 s~~~l~~~~~~~~l~~~f  321 (457)
                      ..+++.+....++...+.
T Consensus       242 ~~e~l~~~PhHPYTqALi  259 (330)
T COG4170         242 PSEELVTMPHHPYTQALI  259 (330)
T ss_pred             chhHHhcCCCCchHHHHH
Confidence            999999887666555443

>KOG0927|consensus

Probab=99.94  E-value=2.1e-26  Score=241.38  Aligned_cols=219  Identities=20%  Similarity=0.276  Sum_probs=155.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE--cCccCCCCchhhh-
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV--LGGHPASIYHKTA-  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i--~G~~~~~~~~~~~-  163 (457)
                      ...+.+.|+++.|-+  +.+++|+.|++.+|+-+||+|+|||||||+|++|+|-..|..=.+-+  ..+.......... 
T Consensus        73 s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~  150 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ  150 (614)
T ss_pred             cccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence            346999999999988  99999999999999999999999999999999999999886544422  2222211110000 


Q ss_pred             ---------cCcEEEEcCCCCCC-CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHH
Q psy10858        164 ---------GSKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRL  231 (457)
Q Consensus       164 ---------r~~IGyvpQ~~~L~-~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRl  231 (457)
                               +.++.|.-.+.... ++..-.+....+-++-.++.+....++.+++..++.. . .++.+.+||||+|.|+
T Consensus       151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~  230 (614)
T KOG0927|consen  151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA  230 (614)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence                     01111111111000 0000000111112222344455666677777777763 3 6899999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe-EEEecChhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR-IIAQDSPDGFK  309 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk-I~~~gs~~~l~  309 (457)
                      +|||||..+|++|+|||||++||+.+...+-+.+... +.+ ++++++|+-+.+.. |++|+-|++++ +.+.|+-+...
T Consensus       231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~  308 (614)
T KOG0927|consen  231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV  308 (614)
T ss_pred             HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-cCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence            9999999999999999999999999999998887654 222 89999999999976 99999999999 56677766554

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.94  E-value=7.4e-26  Score=233.38  Aligned_cols=187  Identities=24%  Similarity=0.291  Sum_probs=151.8

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ...++-.+++|.||+  + .|+-=.=+|..||++|++||||-||||+.|+|+|.++|++|.    ..          .-+
T Consensus       340 ~~lv~y~~~~k~~g~--F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~----------~~~  402 (591)
T COG1245         340 DTLVEYPDLKKTYGD--F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE----------DLK  402 (591)
T ss_pred             ceeeecchheeecCc--e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc----------cce
Confidence            356777888899987  3 244445577889999999999999999999999999999987    11          136


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      |+|=||-..--.+.||.+.|.-...- ++-  ..   -..++.+-+.|+. .++++.+|||||.|||+||.||..+++++
T Consensus       403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~--s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY  477 (591)
T COG1245         403 VSYKPQYISPDYDGTVEDLLRSAIRSAFGS--SY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY  477 (591)
T ss_pred             EeecceeecCCCCCcHHHHHHHhhhhhccc--ch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE
Confidence            89999987766778999987543221 111  11   1345667777865 79999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY  295 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~  295 (457)
                      +||||++.||...|-.+-+.|+... ++++|.+++.||+-.+.. +||+++..
T Consensus       478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             EecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            9999999999999999999977765 458999999999999987 89998774

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.93  E-value=8.5e-25  Score=235.00  Aligned_cols=186  Identities=27%  Similarity=0.360  Sum_probs=153.6

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ...|+++|++..-+.+ .+.|+++||+|++||-+-|.|+||||||||+|+|+|+.|--+|+|..-           ....
T Consensus       390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----------~~~~  457 (604)
T COG4178         390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----------ADSA  457 (604)
T ss_pred             cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----------CCCc
Confidence            4689999999999875 589999999999999999999999999999999999999988888641           1245


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-------CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-------LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-------~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      +-|+||.|.+... |.+|-|.|.......+++    .+.+++..++|++       .++--..||+||||||++||.|++
T Consensus       458 ~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~----~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~  532 (604)
T COG4178         458 LLFLPQRPYLPQG-TLREALCYPNAAPDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLH  532 (604)
T ss_pred             eEEecCCCCCCCc-cHHHHHhCCCCCCCCChH----HHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHc
Confidence            8899999998655 999999887554334443    3556677777753       233445799999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                      +|++++|||-|++||+.+...++++++.-. .+.|||-|+|.-..-...++
T Consensus       533 kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~  582 (604)
T COG4178         533 KPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSR  582 (604)
T ss_pred             CCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhh
Confidence            999999999999999999999999976522 58999999999766554444

>KOG0062|consensus

Probab=99.92  E-value=3.2e-25  Score=231.36  Aligned_cols=200  Identities=21%  Similarity=0.237  Sum_probs=146.4

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..-|.+.+.+..||+  +.+|++-++++..|--|||+|+||+|||||||+|+.      |.|..+..+-      +.+. 
T Consensus        78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veq------E~~g-  142 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQ------EVRG-  142 (582)
T ss_pred             ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchh------heec-
Confidence            346888999999998  999999999999999999999999999999999997      5555443221      1110 


Q ss_pred             EEEEcCC-CCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        167 VGYMPQE-LAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       167 IGyvpQ~-~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                       -|++-. ..+..++++.+.+.--..+. +.   ...+...++|.-+|+..  ..++.++||||.|-|++|||||..+|+
T Consensus       143 -~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pD  218 (582)
T KOG0062|consen  143 -DDTEALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPD  218 (582)
T ss_pred             -cchHHHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCC
Confidence             122211 12333444444332211111 11   11222333777888843  478899999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGF  308 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l  308 (457)
                      ||||||||+.||..+...+-++++..   +.|+|+||||-+++.. |..|+-+++-|+- ..|.-+++
T Consensus       219 lLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F  283 (582)
T KOG0062|consen  219 LLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF  283 (582)
T ss_pred             EEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence            99999999999999999988887653   5899999999999976 9999988876662 34544443

>KOG2355|consensus

Probab=99.91  E-value=1.2e-23  Score=199.00  Aligned_cols=213  Identities=22%  Similarity=0.353  Sum_probs=164.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .-+|++.++.++|... .+++-|+|++++.|...-|+|.||||||||||+|+|-.-.-.|.|.+.|.+.-....-.-...
T Consensus        11 ~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd   89 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD   89 (291)
T ss_pred             cceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence            4689999999999764 488999999999999999999999999999999999877777999999987543111111122


Q ss_pred             EEEEc----------CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH
Q psy10858        167 VGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       167 IGyvp----------Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      ..|+-          -+..+-.++++.+.+ |.  .-|...    +|-+++.+.+++. ..-+.+.+|-||||||.|++.
T Consensus        90 l~YLGgeW~~~~~~agevplq~D~sae~mi-fg--V~g~dp----~Rre~LI~iLDId-l~WRmHkvSDGqrRRVQicMG  161 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FG--VGGDDP----ERREKLIDILDID-LRWRMHKVSDGQRRRVQICMG  161 (291)
T ss_pred             eeEecccccccccccccccccccccHHHHH-hh--ccCCCh----hHhhhhhhheecc-ceEEEeeccccchhhhHHHHh
Confidence            33332          133445567776544 21  223322    4455667777764 345678899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhh
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l  308 (457)
                      |++-=++|+|||-|.-||..+|..+.+.++. ..++|.||+..||-.+-++. .++++.|.+|+++-.-.-+.+
T Consensus       162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i  235 (291)
T KOG2355|consen  162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI  235 (291)
T ss_pred             cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence            9998899999999999999999999999655 44569999999999987765 899999999999874444333

>KOG0062|consensus

Probab=99.91  E-value=5.8e-24  Score=222.06  Aligned_cols=199  Identities=20%  Similarity=0.208  Sum_probs=165.5

Q ss_pred             cccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         85 EEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        85 ~~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      ...|.+++.+|++.|..+.-..+.++++.++.-+-.+++|+||+||||++|++.|...|..|.+.+.           .|
T Consensus       358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r  426 (582)
T KOG0062|consen  358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PR  426 (582)
T ss_pred             CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------cc
Confidence            4568999999999997643368999999999999999999999999999999999999999988653           35


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      .+|+|-+|...=+-++.|.+.-.+-...-|..+++    ++..+..||+..  +.+.+.+||||||-||++|.....+|-
T Consensus       427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee----~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph  502 (582)
T KOG0062|consen  427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEE----IRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH  502 (582)
T ss_pred             ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHH----HHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence            78999999876555556554333333334665444    556688899953  456689999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA  301 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~  301 (457)
                      +|+|||||+.||..+-..+-+.++..   +-.||+||||.+.+.. |+.+++.++|++..
T Consensus       503 lLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  503 LLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             EEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            99999999999999998888887664   4579999999999976 99999999999965

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.90  E-value=4.7e-24  Score=202.02  Aligned_cols=145  Identities=21%  Similarity=0.240  Sum_probs=111.9

Q ss_pred             EeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC
Q psy10858        107 LNNCSLVVKRRE-FFVLLGASSAGKTTLLKAIV--------GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF  177 (457)
Q Consensus       107 L~~vs~~I~~Ge-i~gLlGpNGaGKTTLLk~L~--------Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~  177 (457)
                      +-++||++.+|+ +++|.||||||||||+|+|+        |..-|...                 ...++|+.|....+
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------------~~~~~~~~~~~~~l   79 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------------GSSLPVFENIFADI   79 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------------cccCcCccEEEEec
Confidence            557999999995 89999999999999999998        43333210                 01234444432111


Q ss_pred             CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858        178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL  256 (457)
Q Consensus       178 ~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~  256 (457)
                                                        +.. ..++..+++|+||||++.+++++ .+|+++|+||||+|+|+.
T Consensus        80 ----------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~  124 (200)
T cd03280          80 ----------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPV  124 (200)
T ss_pred             ----------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHH
Confidence                                              110 13455689999999999999885 899999999999999999


Q ss_pred             HHHHHHH-HHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEec
Q psy10858        257 VRKRMWD-LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQD  303 (457)
Q Consensus       257 ~r~~i~~-~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~g  303 (457)
                      .+..++. +++.+.+.|.|+|++||+.+....||++..|++|++...+
T Consensus       125 ~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         125 EGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence            9999975 5777777799999999996555669999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0066|consensus

Probab=99.90  E-value=1.2e-23  Score=215.92  Aligned_cols=192  Identities=21%  Similarity=0.262  Sum_probs=156.1

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      .+|++-+.+|++.|.+. ++.+++++|-|.--..++|+||||.||||||++|.|-+.|+.|+..-           ..|-
T Consensus       583 ~PPvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK-----------nhrL  650 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK-----------NHRL  650 (807)
T ss_pred             CCCeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc-----------ccee
Confidence            35789999999999542 78999999999999999999999999999999999999999987752           1245


Q ss_pred             cEEEEcCCC--CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCC-CCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        166 KVGYMPQEL--AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLE-RPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       166 ~IGyvpQ~~--~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~-~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +||+.-|+.  .|-.+-|..|+|   .+.+.++..+.    ...+-.+||. +++ -.+..||||||-||++|---+..|
T Consensus       651 ~iG~FdQh~~E~L~~Eetp~EyL---qr~FNlpyq~A----RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~P  723 (807)
T KOG0066|consen  651 RIGWFDQHANEALNGEETPVEYL---QRKFNLPYQEA----RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGP  723 (807)
T ss_pred             eeechhhhhHHhhccccCHHHHH---HHhcCCChHHH----HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCC
Confidence            799998876  455556766655   46677776543    3456778884 443 468899999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      +||||||||++||..+...+-+.|..+   .-.|||||||-..+.. -..++++.+..|
T Consensus       724 DvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i  779 (807)
T KOG0066|consen  724 DVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLIVETDCNLWVVENQGI  779 (807)
T ss_pred             CEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccceeeecCceEEEEccCCh
Confidence            999999999999999999999888765   3479999999888754 345677766544

>KOG0060|consensus

Probab=99.89  E-value=3e-22  Score=211.56  Aligned_cols=199  Identities=21%  Similarity=0.197  Sum_probs=156.0

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      .+.+|++++|+..-.+++..+++|+||+|++|+-+-|.||||||||+||++|+|+.+-.+|.+.--.+.-        -+
T Consensus       430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~  501 (659)
T KOG0060|consen  430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PK  501 (659)
T ss_pred             ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CC
Confidence            3468999999999876557889999999999999999999999999999999999999999997533210        14


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHhHcCCCC-------CC-----CCCCCCChhHHHHHH
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPN-------LE-----RPVKYLSGGQKRRLS  232 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g~~~~~~~~~~~~ll~~l~L~~-------~~-----~~~~~LSGGqkQRls  232 (457)
                      .+-|+||.|.+-.. |.+|.+.|...-. ...+....+++.+.++.++|.+       .|     .-...||+|||||++
T Consensus       502 ~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa  580 (659)
T KOG0060|consen  502 DLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLA  580 (659)
T ss_pred             ceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHH
Confidence            58999999987554 9999998873221 1111111223444444444421       22     234579999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      +||-+.++|++-||||-||++|......+.+..+   +.|+|.|-|+|.-..-+.-|.++-|+.
T Consensus       581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             HHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence            9999999999999999999999999988888764   469999999999887777888888864

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=1.8e-22  Score=193.84  Aligned_cols=84  Identities=21%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHh----hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEcCChhHHh-cc
Q psy10858        216 LERPVKYLSGGQKRRLSFTIAI----LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-G-RTVIMTTQYIEEAN-DA  288 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA~AL----l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g-~TIIisTH~~~ea~-~~  288 (457)
                      .+..+.+||+|||||+.+|++|    +.+|+++|+||||+|||+..+..+++.+....++ | .|+|++||++.+.. .+
T Consensus       120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~  199 (213)
T cd03277         120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH  199 (213)
T ss_pred             cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence            4567899999999998877554    5899999999999999999999999998776655 5 58999999998764 45


Q ss_pred             C--eEEEEeCCeE
Q psy10858        289 S--EVAFLYKGRI  299 (457)
Q Consensus       289 d--ri~im~~GkI  299 (457)
                      |  +|++|.+|+-
T Consensus       200 ~~~~v~~l~~g~~  212 (213)
T cd03277         200 EKMTVLCVYNGPH  212 (213)
T ss_pred             CceEEEEEecCcc
Confidence            5  7889998873

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0065|consensus

Probab=99.88  E-value=1.1e-22  Score=230.64  Aligned_cols=204  Identities=26%  Similarity=0.324  Sum_probs=173.7

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI---SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p---~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      ..+|+|+|.-+++|+.+.++||.|||||||+|.|+|-+.-   ..|+|.++|.+......   ++.++|++|++..+++|
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l  204 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL  204 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence            5799999999999999999999999999999999998753   35799999988765432   67899999999999999


Q ss_pred             CHHHHHHHhhhhcCC-------CHHHHH-HHHHHHHhHcCCCC-C-----CCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        181 TIKETLNFFGMIYGM-------DESIWL-FQMRKYSHVLKLPN-L-----ERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       181 TV~EnL~~~~~l~g~-------~~~~~~-~~~~~ll~~l~L~~-~-----~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+|.|.|.++..+-       ++.+.. ...+.+++.+||.+ +     |...+-.|||||+||++|-+++.+|+++++
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~  284 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW  284 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence            999999999887643       222221 24567899999964 3     456677999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhH-H-hccCeEEEEeCCeEEEecChhhhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEE-A-NDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~e-a-~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||+|.|||..+.-++.+.++.+.+ .+.|++++-|.... + +..|.|.+|.+|+++..|+.++.+.
T Consensus       285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~  351 (1391)
T KOG0065|consen  285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP  351 (1391)
T ss_pred             ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence            999999999999999999777654 48899998888654 4 4589999999999999999998875

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.87  E-value=2.4e-21  Score=181.26  Aligned_cols=74  Identities=23%  Similarity=0.319  Sum_probs=68.4

Q ss_pred             CChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        223 LSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       223 LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      ||+|||||++||+||+    .+|+++|+|||+++||+..++.+++.+..+.++|.|+|++||+++.+..+|+++.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence            9999999999999996    6899999999999999999999999987776668999999999988878999998864

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.86  E-value=7.2e-22  Score=187.81  Aligned_cols=147  Identities=19%  Similarity=0.207  Sum_probs=109.1

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      +.+++|++|+.  |++++|+||||||||||+|+|+|...     +...|.++..       .  .+++|...+|..+|+.
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-------~--~~~~q~~~l~~~~~~~   77 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-------S--SFELPPVKIFTSIRVS   77 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-------C--ccCcccceEEEeccch
Confidence            56888887775  79999999999999999999988653     1124544321       1  3667777889999999


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-  262 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~-  262 (457)
                      ||+.+....+   ..+. .++.++++.+++                         .+|+++|+||||+|+|+..+..+. 
T Consensus        78 d~l~~~~s~~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllDEp~~glD~~~~~~l~~  128 (199)
T cd03283          78 DDLRDGISYF---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDEIFKGTNSRERQAASA  128 (199)
T ss_pred             hccccccChH---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence            9997643221   2222 456666665542                         799999999999999999998764 


Q ss_pred             HHHHHHHhCCcEEEEEcCChhHHhc---cCeEEEEe
Q psy10858        263 DLLQVFVGKGRTVIMTTQYIEEAND---ASEVAFLY  295 (457)
Q Consensus       263 ~~i~~~~~~g~TIIisTH~~~ea~~---~dri~im~  295 (457)
                      .+++.+.+.|.|+|++||+++++..   .++|..++
T Consensus       129 ~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~  164 (199)
T cd03283         129 AVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYH  164 (199)
T ss_pred             HHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence            4677766779999999999998854   35565554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.86  E-value=1e-21  Score=189.90  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=115.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE-EEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG-YMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG-yvpQ~~~L~~~lTV  182 (457)
                      ..+.+|+++++.+|++++|.||||+||||++++++=.                     ....++| |+|.+...++   +
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la~~g~~vpa~~~~~~---~   72 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMAQIGCFVPCDSADIP---I   72 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHHHhCCCcCcccEEEe---c
Confidence            6789999999999999999999999999999999810                     1122455 6666543222   1


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh--hcCCceEEEeCC---CCCCCHHH
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI--LHKPQLIILDEP---CVGVDPLV  257 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL--l~~P~lLILDEP---TsGLDp~~  257 (457)
                                           +++++..+++.  +...+.+|.|++|++.+++++  +.+|+++|||||   |+++|+.+
T Consensus        73 ---------------------~~~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~  129 (222)
T cd03285          73 ---------------------VDCILARVGAS--DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG  129 (222)
T ss_pred             ---------------------cceeEeeeccc--cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH
Confidence                                 12233445543  334678999999999999999  899999999999   99999998


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858        258 RKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       258 r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs  304 (457)
                      ..  |.+++.+.+ .|.++|++||+.+..+.||++..+++|++...++
T Consensus       130 ~~--~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         130 LA--WAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HH--HHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence            85  444454443 4899999999744445699999999999987664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.86  E-value=3.9e-21  Score=176.45  Aligned_cols=139  Identities=24%  Similarity=0.259  Sum_probs=103.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE-EcCCCCCCCCCCHHHHH
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY-MPQELAMFGELTIKETL  186 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy-vpQ~~~L~~~lTV~EnL  186 (457)
                      ...++.+.++.+..|+|||||||||+++.+....-..+|.+.. +...          +.|+ +++....+        +
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~----------~~g~~~~~~~~~~--------i   72 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV----------KAGCIVAAVSAEL--------I   72 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc----------cCCCcceeeEEEE--------e
Confidence            4455666667799999999999999999988776666555443 1111          1111 12111111        0


Q ss_pred             HHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHH
Q psy10858        187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMW  262 (457)
Q Consensus       187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~  262 (457)
                            +                         ...+||+||+||+++|++|+.    +|+++|||||++|+|+..+..+.
T Consensus        73 ------~-------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~  121 (162)
T cd03227          73 ------F-------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA  121 (162)
T ss_pred             ------h-------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence                  0                         001299999999999999987    78999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        263 DLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       263 ~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      +.+....++|.++|++||+.+.+..+|+++.|..
T Consensus       122 ~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227         122 EAILEHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            9965554448999999999999988999999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.85  E-value=2.6e-21  Score=192.28  Aligned_cols=79  Identities=22%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        219 PVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      ...+|||||+||+++|++++.    +|+++||||||++||+..+..+++.+.... ++.|+|++||++..+..||++++|
T Consensus       167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~~~~d~~~~l  245 (276)
T cd03241         167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVAAMADNHFLV  245 (276)
T ss_pred             hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHHHhcCcEEEE
Confidence            344599999999999997654    999999999999999999999999987764 478999999999877779999999


Q ss_pred             eCCe
Q psy10858        295 YKGR  298 (457)
Q Consensus       295 ~~Gk  298 (457)
                      .+|.
T Consensus       246 ~~~~  249 (276)
T cd03241         246 EKEV  249 (276)
T ss_pred             EEec
Confidence            8764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=201.89  Aligned_cols=186  Identities=21%  Similarity=0.229  Sum_probs=135.6

Q ss_pred             eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC--------
Q psy10858         94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS--------  165 (457)
Q Consensus        94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~--------  165 (457)
                      +++.+||.+.+ .|.++- ...+|+++||+|+||-||||.+|+|+|.+.|.=|+-.  + ++. .+ +..++        
T Consensus        79 e~vHRYg~NgF-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp~-wd-eVi~~FrGtELq~  151 (591)
T COG1245          79 EVVHRYGVNGF-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PPS-WD-EVIKRFRGTELQN  151 (591)
T ss_pred             cceeeccCCce-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CCC-HH-HHHHHhhhhHHHH
Confidence            45788986433 233322 3568999999999999999999999999999866431  2 111 00 01111        


Q ss_pred             ----------cEEEEcCCCCCCCC---CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHH
Q psy10858        166 ----------KVGYMPQELAMFGE---LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRL  231 (457)
Q Consensus       166 ----------~IGyvpQ~~~L~~~---lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRl  231 (457)
                                ++..=||-..+.|.   -+|.|-|.-         .+..-..+++.+.++|.. +++.+++||||+-|||
T Consensus       152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~  222 (591)
T COG1245         152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRV  222 (591)
T ss_pred             HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHH
Confidence                      12222332111111   144443321         111234677888999965 7999999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY  295 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~  295 (457)
                      +||.|++++.+++++|||||-||...|-..-++++.+.+.+++||++.||+..+.. +|-|.++-
T Consensus       223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         223 AIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            99999999999999999999999999999999999988889999999999999987 78887774

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.85  E-value=5.4e-22  Score=188.06  Aligned_cols=156  Identities=13%  Similarity=0.164  Sum_probs=111.0

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN  187 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~  187 (457)
                      ..++++.+|++++|+||||||||||||+|++.. .+..|....           ..+..++|+.|..   ..++..++  
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~---~~~~~~d~--   84 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIF---TRIGAEDS--   84 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEE---EEecCccc--
Confidence            455666789999999999999999999999543 222221110           0122344433321   11111111  


Q ss_pred             HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-HHHH
Q psy10858        188 FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQ  266 (457)
Q Consensus       188 ~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~-~~i~  266 (457)
                                                  .....+.+|++++| ++.+.+++.+|+++||||||+|+||..+..+. .+++
T Consensus        85 ----------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~  135 (202)
T cd03243          85 ----------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLE  135 (202)
T ss_pred             ----------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence                                        22344567777775 77778888999999999999999999888775 4577


Q ss_pred             HHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858        267 VFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       267 ~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      .+.+.+.++|++||+.+.++.++++..++.|++...+...++.
T Consensus       136 ~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  178 (202)
T cd03243         136 HLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLT  178 (202)
T ss_pred             HHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCeee
Confidence            7767799999999999888888899999999998887764443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.84  E-value=3.4e-20  Score=218.80  Aligned_cols=198  Identities=18%  Similarity=0.180  Sum_probs=148.0

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------cCCCCCceEEEEcCccCCCCchh----------hhc--
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----------GLKNISQGEIWVLGGHPASIYHK----------TAG--  164 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----------Gll~p~sG~I~i~G~~~~~~~~~----------~~r--  164 (457)
                      |+||+.+|+-|.++++.|.+|||||||++-..          |... -+--|.++-.++....+.          ..|  
T Consensus      1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~-~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635       1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSV-FSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred             CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccc-cCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence            89999999999999999999999999998443          3322 123456655444321100          000  


Q ss_pred             -------C-----------------------------cEEEEcCCC-----------------CC--------CCCCCHH
Q psy10858        165 -------S-----------------------------KVGYMPQEL-----------------AM--------FGELTIK  183 (457)
Q Consensus       165 -------~-----------------------------~IGyvpQ~~-----------------~L--------~~~lTV~  183 (457)
                             +                             .+.|+|.-.                 .-        .-+|||.
T Consensus      1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635       1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred             HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence                   0                             012222210                 00        1246777


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC---CceEEEeCCCCCCCHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK---PQLIILDEPCVGVDPLVR  258 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~---P~lLILDEPTsGLDp~~r  258 (457)
                      |.+.||...     ..+ .+.-+.+..+||..  +.++..+|||||.||+-||..|..+   +.++||||||+||++...
T Consensus      1665 ea~~~F~~~-----~~i-~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~ 1738 (1809)
T PRK00635       1665 EVAETFPFL-----KKI-QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQK 1738 (1809)
T ss_pred             HHHHHhhcc-----HHH-HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHH
Confidence            776666321     122 23345678889965  7899999999999999999999865   789999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe------CCeEEEecChhhhhhc
Q psy10858        259 KRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY------KGRIIAQDSPDGFKSK  311 (457)
Q Consensus       259 ~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~------~GkI~~~gs~~~l~~~  311 (457)
                      +.++++++.+.+.|.|||++.||++.+..||.|+=|-      .|+|++.|+|+++...
T Consensus      1739 ~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635       1739 SALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence            9999999999999999999999999999999999884      6899999999999764

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=3.6e-20  Score=210.05  Aligned_cols=132  Identities=24%  Similarity=0.386  Sum_probs=113.5

Q ss_pred             CCCCCHHHHHHHhhhhcCCCHH----------HHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--c
Q psy10858        177 FGELTIKETLNFFGMIYGMDES----------IWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--Q  242 (457)
Q Consensus       177 ~~~lTV~EnL~~~~~l~g~~~~----------~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~  242 (457)
                      +..+||.|.+.|.-.+ +.+..          ++.+++. +++.++|.+  +++++.+|||||||||.||+||+.+|  +
T Consensus       434 ~~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~  511 (943)
T PRK00349        434 VSELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV  511 (943)
T ss_pred             HhcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence            4568999998885443 33332          3444554 677888864  68999999999999999999999997  9


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhh
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKS  310 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~  310 (457)
                      +|||||||+||||..++.++++++.+++.|.|||+|||+++++..||+|++|      ++|+|++.|+++++..
T Consensus       512 llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~  585 (943)
T PRK00349        512 LYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK  585 (943)
T ss_pred             EEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence            9999999999999999999999988888899999999999999889999999      9999999999999864

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.83  E-value=6.4e-20  Score=199.94  Aligned_cols=136  Identities=26%  Similarity=0.390  Sum_probs=111.4

Q ss_pred             CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC---ceEEEeCCCCCC
Q psy10858        179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP---QLIILDEPCVGV  253 (457)
Q Consensus       179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P---~lLILDEPTsGL  253 (457)
                      +|||.|-..||...-     .+. +.-+.+..+||..  +.+++.+|||||.|||-||.-|....   -++||||||+||
T Consensus       783 ~MTveEA~~FF~~~p-----~I~-rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL  856 (935)
T COG0178         783 DMTVEEALEFFEAIP-----KIA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL  856 (935)
T ss_pred             hccHHHHHHHHhcch-----HHH-HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence            366667666665431     122 2334566788864  78999999999999999999999876   999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        254 DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       254 Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      -..-.+++++.+..+.++|.|||++.|+|+.++.||.|+=|      ..|+|++.|+|+++.+..  .+....|+
T Consensus       857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~--~S~Tg~yL  929 (935)
T COG0178         857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVK--ASYTGKYL  929 (935)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCc--cchhHHHH
Confidence            99999999999999999999999999999999999999887      479999999999998642  34444444

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.83  E-value=1.6e-20  Score=179.44  Aligned_cols=139  Identities=22%  Similarity=0.313  Sum_probs=108.3

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..+.+|++|++++|++++|.||||+||||++|+|+|+.        +             ..++|+-.  ++.+..+++.
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~-------------la~~G~~v--pa~~~~l~~~   72 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------I-------------MAQIGCFV--PAEYATLPIF   72 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------H-------------HHHcCCCc--chhhcCccCh
Confidence            68999999999999999999999999999999999884        0             11233211  4455566777


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-  261 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i-  261 (457)
                      +++..                     .++.. ..++..+++|+|++|+ +.+.+++.+|+++|||||++|+||.....+ 
T Consensus        73 d~I~~---------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~  130 (204)
T cd03282          73 NRLLS---------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS  130 (204)
T ss_pred             hheeE---------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence            77632                     22232 2456778999999975 666778999999999999999999776665 


Q ss_pred             HHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858        262 WDLLQVFVGKGRTVIMTTQYIEEAND  287 (457)
Q Consensus       262 ~~~i~~~~~~g~TIIisTH~~~ea~~  287 (457)
                      +.+++.+.+.|.++|++||+.+.++.
T Consensus       131 ~~il~~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         131 LAILECLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             HHHHHHHHhcCCEEEEECChHHHHHH
Confidence            55577777789999999999998865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0064|consensus

Probab=99.83  E-value=1.9e-20  Score=196.12  Aligned_cols=180  Identities=17%  Similarity=0.249  Sum_probs=137.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .-|.++|+-.--..+ .+++..++|+|++|--+-|+||||||||+|+++|.|+.|...|...+   +        ...+|
T Consensus       480 ~gI~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---P--------~~~~m  547 (728)
T KOG0064|consen  480 NGIILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---P--------RPNNI  547 (728)
T ss_pred             cceEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---C--------CCcce
Confidence            347778877766553 67899999999999999999999999999999999999987776653   1        12459


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhh-----hcCCCHHHHHHHHHHHHhHcCCCC----------CCCCCCCCChhHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGM-----IYGMDESIWLFQMRKYSHVLKLPN----------LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~-----l~g~~~~~~~~~~~~ll~~l~L~~----------~~~~~~~LSGGqkQRls  232 (457)
                      -|+||.|.+- --|.+|.+-|.-.     -+|..+.+.    ..+++.+.|++          ...--.-||||+|||++
T Consensus       548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL----~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~  622 (728)
T KOG0064|consen  548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDL----EAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMG  622 (728)
T ss_pred             EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHH----HHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHH
Confidence            9999999764 3477777755422     235554443    33333333321          11122469999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND  287 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~  287 (457)
                      +||.+-|+|+.-+|||-||++-+.....+++..+.   -|.+.|-+||....-..
T Consensus       623 mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~  674 (728)
T KOG0064|consen  623 MARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY  674 (728)
T ss_pred             HHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence            99999999999999999999999999988887643   59999999999876654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.82  E-value=1.4e-19  Score=204.84  Aligned_cols=131  Identities=25%  Similarity=0.369  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHhhhhcCCCH----------HHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--ce
Q psy10858        178 GELTIKETLNFFGMIYGMDE----------SIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--QL  243 (457)
Q Consensus       178 ~~lTV~EnL~~~~~l~g~~~----------~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~l  243 (457)
                      -.|||.|.+.|+..+. .+.          .++..+++ .+..++|..  +++.+.+|||||+|||.||+||+.+|  ++
T Consensus       433 ~~~~v~~~~~~~~~l~-~~~~~~~ia~~i~~~i~~rl~-~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l  510 (924)
T TIGR00630       433 SELSIREAHEFFNQLD-LTPEEKKIAEEILKEIKERLG-FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL  510 (924)
T ss_pred             hcCCHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHH-hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence            4688988888876642 111          12233332 356678854  58999999999999999999999986  89


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhh
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKS  310 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~  310 (457)
                      |||||||+||||..++.++++++.++++|.|||+|||+++++..||+|++|      ++|+|++.|+++++..
T Consensus       511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~  583 (924)
T TIGR00630       511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA  583 (924)
T ss_pred             EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence            999999999999999999999988888899999999999999889999999      9999999999998854

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.81  E-value=1.8e-19  Score=184.65  Aligned_cols=178  Identities=28%  Similarity=0.370  Sum_probs=140.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC-
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--------KNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-  174 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--------l~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~-  174 (457)
                      ..+++||||+|++|++++++|+|||||||+|+||.|.        ++|++|.|.+--..           --+.+|-+. 
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-----------~~a~iPge~E  464 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-----------VSALIPGEYE  464 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-----------hhhccCcccc
Confidence            4599999999999999999999999999999999997        47899988762111           112344432 


Q ss_pred             CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC---CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858        175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN---LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV  251 (457)
Q Consensus       175 ~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs  251 (457)
                      .-|...|+.|++.   ...|    + -....+++...|+.+   ..++.++||-|||.|+.||.++...|.+++.||-.|
T Consensus       465 p~f~~~tilehl~---s~tG----D-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A  536 (593)
T COG2401         465 PEFGEVTILEHLR---SKTG----D-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA  536 (593)
T ss_pred             cccCchhHHHHHh---hccC----c-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence            2244667888773   1111    1 122456788888854   357889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEE
Q psy10858        252 GVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND--ASEVAFLYKGRII  300 (457)
Q Consensus       252 GLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~  300 (457)
                      .||+.+...+..-+..+ ++-|.|++++||..+...+  -|+++++.=|++.
T Consensus       537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            99999999998886665 5669999999999998865  5999988877653

>KOG0066|consensus

Probab=99.80  E-value=1.1e-20  Score=194.26  Aligned_cols=208  Identities=20%  Similarity=0.226  Sum_probs=153.5

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCCCceEEEEcCccCCCCchh----
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL---KNISQGEIWVLGGHPASIYHK----  161 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl---l~p~sG~I~i~G~~~~~~~~~----  161 (457)
                      -|.++|.+.+-.+  +..+.|.|+.|-.|..|||+||||-|||||||.|+..   ++| .=.+++..+.+......    
T Consensus       264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~t  340 (807)
T KOG0066|consen  264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDT  340 (807)
T ss_pred             cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHH
Confidence            4888898888877  8899999999999999999999999999999999865   344 34455555544221100    


Q ss_pred             hh---cCcEEEEcCCC-----CCCCCCCHHHHHHH-hhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHH
Q psy10858        162 TA---GSKVGYMPQEL-----AMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRR  230 (457)
Q Consensus       162 ~~---r~~IGyvpQ~~-----~L~~~lTV~EnL~~-~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQR  230 (457)
                      .+   .++..++-.+.     .--...|+.|-|.- +..++.+.......++.+++.-+|+..  .+++...+|||.|-|
T Consensus       341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR  420 (807)
T KOG0066|consen  341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR  420 (807)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence            00   11222211111     11234567666643 333443434445667778888888853  578889999999999


Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEe
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQ  302 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~  302 (457)
                      |+|||||..+|-+|.|||||+.||..+...+-++++-+   .+|.+|||||-.++.. |+.|+-|++-++...
T Consensus       421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyY  490 (807)
T KOG0066|consen  421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYY  490 (807)
T ss_pred             hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh---hheeEEEecccchHHHHHHHHhhhhhhhhhhh
Confidence            99999999999999999999999999888777777665   4699999999999975 999999998887543

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.79  E-value=1.8e-18  Score=171.44  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             CCCCCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-c
Q psy10858        219 PVKYLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-A  288 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~  288 (457)
                      ..+.||+||||++++|++|+         .+|+++||||||++||+..++.+++.+...   + .++++||+.+++.. |
T Consensus       180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccchh
Confidence            45668999999999999985         799999999999999999999999997653   2 46777777776644 5


Q ss_pred             ---CeEEEEeCCeE
Q psy10858        289 ---SEVAFLYKGRI  299 (457)
Q Consensus       289 ---dri~im~~GkI  299 (457)
                         ++++.|++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               68999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.76  E-value=1.6e-18  Score=166.81  Aligned_cols=158  Identities=18%  Similarity=0.268  Sum_probs=110.4

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..+.+++++++++ ++++|.||||+||||+||++++..-.  |+   .|..+.     ....+++|+.|   +|..+++.
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp-----~~~~~i~~~~~---i~~~~~~~   83 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP-----ASKAEIGVVDR---IFTRIGAS   83 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec-----cccceecceee---EeccCCch
Confidence            5689999999987 99999999999999999999875422  11   121111     12356788765   56777887


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH--hhcCCceEEEeCC---CCCCCHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA--ILHKPQLIILDEP---CVGVDPLVR  258 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A--Ll~~P~lLILDEP---TsGLDp~~r  258 (457)
                      |++....                                 |.=+..++.++.+  .+.+|+++|||||   |+++|+.+.
T Consensus        84 ~~ls~g~---------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~  130 (216)
T cd03284          84 DDLAGGR---------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI  130 (216)
T ss_pred             hhhccCc---------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence            7774321                                 2112222233333  3579999999999   888887552


Q ss_pred             HHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        259 KRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       259 ~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                        .+.+++.+.+. +.++|++||+.+..+.+|++..+++|++...++.+++..
T Consensus       131 --~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~~  181 (216)
T cd03284         131 --AWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVVF  181 (216)
T ss_pred             --HHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence              34456655555 899999999987666688877778999988777766643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0063|consensus

Probab=99.72  E-value=3.7e-17  Score=168.28  Aligned_cols=181  Identities=22%  Similarity=0.283  Sum_probs=138.7

Q ss_pred             EEeCCCCceeEeeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEc
Q psy10858         97 KEELKPSNVVLNNCSLVVKRRE-----FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMP  171 (457)
Q Consensus        97 k~yg~~~~~aL~~vs~~I~~Ge-----i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp  171 (457)
                      ++|.+. +.-+.+..|.|+.||     ++..+|.||.||||+++|++|.++|++|     | ++       +.-.|+|=|
T Consensus       343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~-----~-e~-------p~lnVSykp  408 (592)
T KOG0063|consen  343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG-----G-EI-------PVLNVSYKP  408 (592)
T ss_pred             eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc-----C-cc-------cccceeccc
Confidence            345543 445778889999885     7899999999999999999999999875     2 22       123588999


Q ss_pred             CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCC
Q psy10858        172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPC  250 (457)
Q Consensus       172 Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPT  250 (457)
                      |..+--..-||++.+.---+---+..    .-+...++-+.+++ .|+-+.+||||++|||++|.+|-..+++.+.|||.
T Consensus       409 qkispK~~~tvR~ll~~kIr~ay~~p----qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEps  484 (592)
T KOG0063|consen  409 QKISPKREGTVRQLLHTKIRDAYMHP----QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPS  484 (592)
T ss_pred             cccCccccchHHHHHHHHhHhhhcCH----HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence            99877667789987642111101111    22344455555544 58889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858        251 VGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQYIEEAND-ASEVAFLY  295 (457)
Q Consensus       251 sGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~-~dri~im~  295 (457)
                      +-||...|..--..++. ....++|-++|.||.-.+.. +||+++..
T Consensus       485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~  531 (592)
T KOG0063|consen  485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE  531 (592)
T ss_pred             hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence            99999999887777544 45678999999999988876 89998764

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.72  E-value=1.7e-17  Score=164.96  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=102.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc-hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD  196 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~-~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~  196 (457)
                      .-++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+....++++||.. +...++|.+|..         
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~---------  181 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP---------  181 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence            568999999999999999999999999999999999885432 233445678899965 455667766531         


Q ss_pred             HHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy10858        197 ESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI  276 (457)
Q Consensus       197 ~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TII  276 (457)
                      +.      .                    |+   .++++|  ++|+++|+|||++      ++.+..+++.+ +.|+|||
T Consensus       182 k~------~--------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI  223 (270)
T TIGR02858       182 KA------E--------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEAL-HAGVSII  223 (270)
T ss_pred             HH------H--------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEE
Confidence            00      0                    11   233344  6999999999974      33344445554 4699999


Q ss_pred             EEcCChhH--H------------hccCeEEEEeCCeEEEecChhhhh
Q psy10858        277 MTTQYIEE--A------------NDASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       277 isTH~~~e--a------------~~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      +|||+.+.  +            ..++|+++|++|+  ..|+++++.
T Consensus       224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~  268 (270)
T TIGR02858       224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY  268 (270)
T ss_pred             EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence            99997654  4            2279999999887  677776654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.68  E-value=3e-17  Score=153.93  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEcCChhHHhccCeEEE
Q psy10858        216 LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGK-GRTVIMTTQYIEEANDASEVAF  293 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~-~~i~~~~~~-g~TIIisTH~~~ea~~~dri~i  293 (457)
                      .++..+++|+|++|...++. .+.+|+++|+|||++|+||..+..+. .+++.+.++ +.++|++||+++....+++.--
T Consensus        55 ~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~  133 (185)
T smart00534       55 LAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPG  133 (185)
T ss_pred             hhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCcc
Confidence            35667899999887433333 24599999999999999999887764 557776664 8999999999975555664333


Q ss_pred             EeCCeEE
Q psy10858        294 LYKGRII  300 (457)
Q Consensus       294 m~~GkI~  300 (457)
                      ++++++.
T Consensus       134 v~~~~~~  140 (185)
T smart00534      134 VRNLHMS  140 (185)
T ss_pred             ceEEEEE
Confidence            3444443

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.63  E-value=2.2e-15  Score=144.76  Aligned_cols=135  Identities=16%  Similarity=0.237  Sum_probs=93.4

Q ss_pred             ceeEeeeeEEEeCC--cEEEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC-C
Q psy10858        104 NVVLNNCSLVVKRR--EFFVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF-G  178 (457)
Q Consensus       104 ~~aL~~vs~~I~~G--ei~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~-~  178 (457)
                      ..|=+|+++  .++  .+++|.||||+|||||||.|.  +.+ +..|.....           ..-+++|..|...-. .
T Consensus        16 ~~vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a-----------~~~~~~~~d~i~~~l~~   81 (213)
T cd03281          16 SFVPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA-----------DSATIGLVDKIFTRMSS   81 (213)
T ss_pred             ceEcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc-----------CCcEEeeeeeeeeeeCC
Confidence            334455555  444  799999999999999999998  434 455655431           123578888864322 2


Q ss_pred             CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHH
Q psy10858        179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVR  258 (457)
Q Consensus       179 ~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r  258 (457)
                      .-++.+++.                                  ++ .-+-||+++|++++.+|+++|||||++|+|+...
T Consensus        82 ~~si~~~~S----------------------------------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~  126 (213)
T cd03281          82 RESVSSGQS----------------------------------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG  126 (213)
T ss_pred             ccChhhccc----------------------------------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence            223322220                                  11 3355889999999999999999999999999765


Q ss_pred             HH-HHHHHHHHHhC---CcEEEEEcCChhHHhc
Q psy10858        259 KR-MWDLLQVFVGK---GRTVIMTTQYIEEAND  287 (457)
Q Consensus       259 ~~-i~~~i~~~~~~---g~TIIisTH~~~ea~~  287 (457)
                      .. ++.+++.+.+.   +.++|++||+.+.++.
T Consensus       127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281         127 AGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            44 46677776554   3589999999998864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.61  E-value=1.1e-15  Score=171.35  Aligned_cols=133  Identities=23%  Similarity=0.325  Sum_probs=96.8

Q ss_pred             eeeEEEeCC-cEEEEEcCCCccHHHHHHHHHcC-CCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHH
Q psy10858        109 NCSLVVKRR-EFFVLLGASSAGKTTLLKAIVGL-KNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET  185 (457)
Q Consensus       109 ~vs~~I~~G-ei~gLlGpNGaGKTTLLk~L~Gl-l~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~En  185 (457)
                      .+|+++..| ++++|.||||+|||||||+|+|. +.+..| .|.. +          ....++|+.|....         
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa-~----------~~~~~~~~d~i~~~---------  372 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPA-N----------EHSEIPYFEEIFAD---------  372 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccC-C----------ccccccchhheeee---------
Confidence            478888888 99999999999999999999987 334333 1110 0          00123333222110         


Q ss_pred             HHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-HHH
Q psy10858        186 LNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL  264 (457)
Q Consensus       186 L~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i-~~~  264 (457)
                               +...+               ......+++|+||+|++.+++++ .+|.++|||||++|+||.....+ +.+
T Consensus       373 ---------i~~~~---------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ai  427 (771)
T TIGR01069       373 ---------IGDEQ---------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISI  427 (771)
T ss_pred             ---------cChHh---------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHH
Confidence                     11100               01234678999999999998887 78999999999999999999999 566


Q ss_pred             HHHHHhCCcEEEEEcCChhHHh
Q psy10858        265 LQVFVGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       265 i~~~~~~g~TIIisTH~~~ea~  286 (457)
                      ++.+.+.|.++|++||+.+...
T Consensus       428 Le~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       428 LEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHHHHhcCCEEEEECChHHHHH
Confidence            8887778999999999988754

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.59  E-value=5.3e-14  Score=145.34  Aligned_cols=78  Identities=22%  Similarity=0.399  Sum_probs=67.2

Q ss_pred             CCCCCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--
Q psy10858        219 PVKYLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--  287 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--  287 (457)
                      ....+|.||||++++|++|+         .+|+|||||||+++||+..++.+++.+..+   +..+++|||+.+.+..  
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~  346 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLL  346 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhh
Confidence            34679999999999999986         799999999999999999999999987542   4589999999887643  


Q ss_pred             -cCeEEEEeCCeE
Q psy10858        288 -ASEVAFLYKGRI  299 (457)
Q Consensus       288 -~dri~im~~GkI  299 (457)
                       .++++.|++|++
T Consensus       347 ~~~~i~~v~~G~i  359 (361)
T PRK00064        347 ENAKIFHVEQGKI  359 (361)
T ss_pred             ccCcEEEEeCCEE
Confidence             358999999997

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.55  E-value=1.7e-14  Score=139.85  Aligned_cols=139  Identities=14%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G-ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ..+.+|++|++.+|++++|.||||+||||++++++| .+.+..|...+ +..          -+++|..|=   +-.+..
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~-a~~----------~~~~~~~~i---~~~~~~   83 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP-ASS----------ATLSIFDSV---LTRMGA   83 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE-cCc----------eEEeccceE---EEEecC
Confidence            578999999999999999999999999999999999 66788887654 221          134444332   111111


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-  261 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i-  261 (457)
                      .|++.-     +.                         ++++ .+-++++-+..-+.+|.++|||||.+|.|+.....+ 
T Consensus        84 ~d~~~~-----~~-------------------------StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~  132 (222)
T cd03287          84 SDSIQH-----GM-------------------------STFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA  132 (222)
T ss_pred             cccccc-----cc-------------------------chHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence            222110     00                         0011 111222222233468999999999999998777775 


Q ss_pred             HHHHHHHHhC-CcEEEEEcCChhHHhc
Q psy10858        262 WDLLQVFVGK-GRTVIMTTQYIEEAND  287 (457)
Q Consensus       262 ~~~i~~~~~~-g~TIIisTH~~~ea~~  287 (457)
                      +.+++.+.+. +.++|++||+.+.++.
T Consensus       133 ~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         133 YATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            6667777665 8899999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.52  E-value=1.2e-14  Score=138.74  Aligned_cols=180  Identities=22%  Similarity=0.276  Sum_probs=96.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC--CCCceEEEEcCccCCC--CchhhhcCcEEEEcCCCCCC-----
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIV-GLK--NISQGEIWVLGGHPAS--IYHKTAGSKVGYMPQELAMF-----  177 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll--~p~sG~I~i~G~~~~~--~~~~~~r~~IGyvpQ~~~L~-----  177 (457)
                      ++..+.+.+ .+..|+||||+||||++.+|. .+-  +..+.+..-...-+..  .........|...+++..-.     
T Consensus        16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~   94 (220)
T PF02463_consen   16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK   94 (220)
T ss_dssp             CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred             CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence            466666654 499999999999999999993 332  1111111000000000  00011122344444443221     


Q ss_pred             CCCCHHHHHHHhhh-hcCCCH-HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCC
Q psy10858        178 GELTIKETLNFFGM-IYGMDE-SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCV  251 (457)
Q Consensus       178 ~~lTV~EnL~~~~~-l~g~~~-~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTs  251 (457)
                      ....+...+.-... -+.+.. ....+.+...+....+.     +..||||||.+++||.-|+    ...+++|||||.+
T Consensus        95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~-----~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~  169 (220)
T PF02463_consen   95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGIS-----PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDA  169 (220)
T ss_dssp             SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTT-----TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccc
Confidence            00111000000000 000010 11123344445444442     2389999999999986653    5679999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      +||+..++.+++++.... ++.-+|++||+-..+..+|+.+.+
T Consensus       170 ~LD~~~~~~l~~~l~~~~-~~~Q~ii~Th~~~~~~~a~~~~~v  211 (220)
T PF02463_consen  170 ALDEQNRKRLADLLKELS-KQSQFIITTHNPEMFEDADKLIGV  211 (220)
T ss_dssp             TS-HHHHHHHHHHHHHHT-TTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccc
Confidence            999999999999988764 457899999998888888875544

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.52  E-value=1.1e-14  Score=138.61  Aligned_cols=49  Identities=20%  Similarity=0.260  Sum_probs=43.6

Q ss_pred             CCCChh--HHHHHHHHHHhhcCCceEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy10858        221 KYLSGG--QKRRLSFTIAILHKPQLIILDEPC-----VGVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       221 ~~LSGG--qkQRlsLA~ALl~~P~lLILDEPT-----sGLDp~~r~~i~~~i~~~~  269 (457)
                      +..||+  |++++.||++++++|++++|||||     +||||..++.+++.++.++
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            344444  999999999999999999999999     9999999999999987764

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.52  E-value=7.5e-14  Score=147.41  Aligned_cols=177  Identities=16%  Similarity=0.165  Sum_probs=118.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC--------CchhhhcCcEEEEcCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS--------IYHKTAGSKVGYMPQELA  175 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~--------~~~~~~r~~IGyvpQ~~~  175 (457)
                      ..+++++ |++.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-.+        ......++.|+|+.+.+.
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~  224 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ  224 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence            5689999 9999999999999999999999999999999999999996654321        112234678999986432


Q ss_pred             CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce-EEEeCC--CCC
Q psy10858        176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL-IILDEP--CVG  252 (457)
Q Consensus       176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l-LILDEP--TsG  252 (457)
                      -     +.+.+.  +..       ..-.+.+.....|..-+ -...+|+       -.|+|+-   ++ +.+.||  |+|
T Consensus       225 ~-----~~~r~~--~~~-------~a~~iAEyfr~~g~~Vl-l~~Dslt-------r~A~A~r---Eisl~~ge~P~~~G  279 (438)
T PRK07721        225 P-----ALMRIK--GAY-------TATAIAEYFRDQGLNVM-LMMDSVT-------RVAMAQR---EIGLAVGEPPTTKG  279 (438)
T ss_pred             C-----HHHHHH--HHH-------HHHHHHHHHHHCCCcEE-EEEeChH-------HHHHHHH---HHHHhcCCCCcccc
Confidence            1     111111  000       01112222221222100 0112222       1222220   00 233564  689


Q ss_pred             CCHHHHHHHHHHHHHHH--hCCc-----EEEEEcCChhHHhccCeEEEEeCCeEEEecChhh
Q psy10858        253 VDPLVRKRMWDLLQVFV--GKGR-----TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       253 LDp~~r~~i~~~i~~~~--~~g~-----TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~  307 (457)
                      +||.....++++++.+.  +.|.     ||++.+|||++ ..||++.+|.+|+|+.+++.++
T Consensus       280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence            99999999999988875  3575     99999999995 5699999999999999998765

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.50  E-value=2.3e-14  Score=123.94  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=64.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..+|++++|++++||+++|+||||||||||++++.      +|++.+.|.++........++.++|+||+  ++ +.|++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti~   72 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRLR   72 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhHH
Confidence            57999999999999999999999999999999986      89999999888665544556677888887  44 45899


Q ss_pred             HHHHH
Q psy10858        184 ETLNF  188 (457)
Q Consensus       184 EnL~~  188 (457)
                      |||.+
T Consensus        73 ~Ni~~   77 (107)
T cd00820          73 LNIFL   77 (107)
T ss_pred             hhcee
Confidence            99976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.49  E-value=4.2e-14  Score=158.88  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=99.8

Q ss_pred             eEEEe-CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE-EEcCCCCCCCCCCHHHHHHH
Q psy10858        111 SLVVK-RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG-YMPQELAMFGELTIKETLNF  188 (457)
Q Consensus       111 s~~I~-~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG-yvpQ~~~L~~~lTV~EnL~~  188 (457)
                      ++.+. .+.++.|.|||++||||+||.+....-                     -.++| |||-...  ..+++.+++. 
T Consensus       320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~---------------------maq~G~~vpa~~~--~~i~~~~~i~-  375 (782)
T PRK00409        320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL---------------------MAKSGLPIPANEP--SEIPVFKEIF-  375 (782)
T ss_pred             eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH---------------------HHHhCCCcccCCC--ccccccceEE-
Confidence            44444 457899999999999999999853310                     01222 4443311  0122222221 


Q ss_pred             hhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH-HHH
Q psy10858        189 FGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD-LLQ  266 (457)
Q Consensus       189 ~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~-~i~  266 (457)
                       .                   .++.. ...+..+++|+||+|++.|++++ .+|.++|||||++|+||.....+.. +++
T Consensus       376 -~-------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile  434 (782)
T PRK00409        376 -A-------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILE  434 (782)
T ss_pred             -E-------------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence             0                   11111 23466789999999999999999 8999999999999999999998865 577


Q ss_pred             HHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEE
Q psy10858        267 VFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIA  301 (457)
Q Consensus       267 ~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~  301 (457)
                      .+.+.|.++|++||+.+.+.. +++..++ ++.+..
T Consensus       435 ~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~  469 (782)
T PRK00409        435 YLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF  469 (782)
T ss_pred             HHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence            777779999999999988765 5555444 445544

>KOG0063|consensus

Probab=99.47  E-value=1.2e-13  Score=142.57  Aligned_cols=171  Identities=19%  Similarity=0.284  Sum_probs=119.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEE--------cCCC---CCCCCCCHH
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYM--------PQEL---AMFGELTIK  183 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyv--------pQ~~---~L~~~lTV~  183 (457)
                      .+|++.|++|-||-||||-+|+++|-++|.-|.-- ++ +.+.       .-++|-        ++..   .+- ...=.
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p-p~w~-------~il~~frgselq~yftk~le~~lk-~~~kp  167 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP-PDWQ-------EILTYFRGSELQNYFTKILEDNLK-AIIKP  167 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC-cchH-------HHhhhhhhHHHhhhhhhhcccccc-CcCCh
Confidence            47999999999999999999999999999866431 01 1000       111111        1111   010 00001


Q ss_pred             HHHH-HhhhhcC-----CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858        184 ETLN-FFGMIYG-----MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL  256 (457)
Q Consensus       184 EnL~-~~~~l~g-----~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~  256 (457)
                      +++. ++....+     +.....+....++.+.++|.. +++-+.+||||+-||.+||.|.+++.++.++|||.+.||..
T Consensus       168 Qyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVK  247 (592)
T KOG0063|consen  168 QYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVK  247 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHH
Confidence            1111 1111111     111222334556677777755 68899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858        257 VRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY  295 (457)
Q Consensus       257 ~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~  295 (457)
                      .|.+--..|+.+.....=||+|.||+..... .|-+.++-
T Consensus       248 QRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  248 QRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             HhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            9999888888888888999999999999986 67777764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.46  E-value=7.2e-14  Score=137.63  Aligned_cols=177  Identities=19%  Similarity=0.131  Sum_probs=108.9

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEc--CccCCCCchhhhcC---cEEEEcCCCCCCCCC---
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVL--GGHPASIYHKTAGS---KVGYMPQELAMFGEL---  180 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~--G~~~~~~~~~~~r~---~IGyvpQ~~~L~~~l---  180 (457)
                      =+.+.+||..+|+|++|+|||||++.|.+......+  .+++.  +...  .+.....+   .+-++.+-.. .+..   
T Consensus        10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~ev~el~~~I~~~~v~~~~~~-~~~~~~~   86 (249)
T cd01128          10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EEVTDMQRSVKGEVIASTFDE-PPERHVQ   86 (249)
T ss_pred             ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--ccHHHHHHHhccEEEEecCCC-CHHHHHH
Confidence            368999999999999999999999999999877533  33332  2111  11111111   2222322221 1100   


Q ss_pred             ---CHHHHHHHhhhhcCCCH----HHHHHHHHHHHhHcCCCCCCCCCCCCChhH--------HHHHHHHHHhhcCCceEE
Q psy10858        181 ---TIKETLNFFGMIYGMDE----SIWLFQMRKYSHVLKLPNLERPVKYLSGGQ--------KRRLSFTIAILHKPQLII  245 (457)
Q Consensus       181 ---TV~EnL~~~~~l~g~~~----~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq--------kQRlsLA~ALl~~P~lLI  245 (457)
                         ++.+...++. ..|...    +++ .+..+..+.+..    .....+|||+        +||+++||++..+++|.+
T Consensus        87 ~~~~~~~~a~~~~-~~G~~vll~iDei-~r~a~a~~ev~~----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~  160 (249)
T cd01128          87 VAEMVLEKAKRLV-EHGKDVVILLDSI-TRLARAYNTVVP----PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI  160 (249)
T ss_pred             HHHHHHHHHHHHH-HCCCCEEEEEECH-HHhhhhhhhccc----cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence               0111111111 111110    111 111111121111    2234479999        999999999999999999


Q ss_pred             EeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEE
Q psy10858        246 LDEPCVGVDPLVRKR-MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII  300 (457)
Q Consensus       246 LDEPTsGLDp~~r~~-i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~  300 (457)
                      |  ||+.+|+..... ++  ++.++..+.|.|+.||.+.+....|.|.+|++|+++
T Consensus       161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~  212 (249)
T cd01128         161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK  212 (249)
T ss_pred             e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence            9  999999655443 43  455554688999999999999999999999999984

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00634 recN DNA repair protein RecN

Probab=99.45  E-value=2e-13  Score=148.70  Aligned_cols=77  Identities=22%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             CCCChhHHHHHHHHHHhhcC----CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        221 KYLSGGQKRRLSFTIAILHK----PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~ALl~~----P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      ..|||||+||++||++++..    |++|||||||+|||+..+..+.+.+..+. ++++||++||++..+..||++++|++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~~ad~~~~l~k  517 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAAHADAHFKVEK  517 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHHhcCeEEEEEE
Confidence            46899999999999999985    69999999999999999999999988775 48999999999998888999999998


Q ss_pred             Ce
Q psy10858        297 GR  298 (457)
Q Consensus       297 Gk  298 (457)
                      |.
T Consensus       518 ~~  519 (563)
T TIGR00634       518 EG  519 (563)
T ss_pred             cc
Confidence            75

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.44  E-value=2.8e-13  Score=156.88  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhhc----------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        216 LERPVKYLSGGQKRRLSFTIAILH----------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA~ALl~----------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .++++.+|||||++||+||+||+.          +|++|||||||+|||+.++..+++++..+.+.|++|+||||++++.
T Consensus       944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618       944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence            567899999999999999999985          7999999999999999999999999888777899999999999998


Q ss_pred             hc-cCeEEEEeCC
Q psy10858        286 ND-ASEVAFLYKG  297 (457)
Q Consensus       286 ~~-~dri~im~~G  297 (457)
                      .. +|+|.|++.|
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            76 8999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.44  E-value=1.6e-13  Score=148.32  Aligned_cols=80  Identities=21%  Similarity=0.290  Sum_probs=71.1

Q ss_pred             CCCCCCChhHHHHHHHHHHhh----------cCCceEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858        218 RPVKYLSGGQKRRLSFTIAIL----------HKPQLIILDEPC-VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       218 ~~~~~LSGGqkQRlsLA~ALl----------~~P~lLILDEPT-sGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~  286 (457)
                      ..+.+||||||||++||+||+          .+|++||||||| ++||+..+..+++++..+  .|.|||++||+.+...
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~  541 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQ  541 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchh
Confidence            356899999999999999987          599999999998 789999999999998876  5899999999987777


Q ss_pred             ccCeEEEEeC-CeE
Q psy10858        287 DASEVAFLYK-GRI  299 (457)
Q Consensus       287 ~~dri~im~~-GkI  299 (457)
                      .+|++++|.+ |+.
T Consensus       542 ~~d~~~~l~~~~~~  555 (562)
T PHA02562        542 KFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhcEEEEEEECCe
Confidence            7999999986 554

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.41  E-value=3.8e-12  Score=123.10  Aligned_cols=140  Identities=19%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..+-+|++|++++|++++|.||||+||||+++++++..-...    . |-.+..   .  ..+++++   +.+|..+...
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~----~-G~~vpa---~--~~~i~~~---~~i~~~~~~~   83 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ----M-GMDVPA---K--SMRLSLV---DRIFTRIGAR   83 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH----c-CCccCc---c--ccEeccc---cEEEEecCcc
Confidence            678999999999999999999999999999999998743211    0 211110   0  1122222   2223333333


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                      |++....                              +++. .+-++++-....+.+|+++|||||++|+||.....+..
T Consensus        84 d~~~~~~------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~  132 (218)
T cd03286          84 DDIMKGE------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAH  132 (218)
T ss_pred             cccccCc------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHH
Confidence            3332110                              0111 12233333333346899999999999999999988877


Q ss_pred             H-HHHHHhC-CcEEEEEcCChhHHhc
Q psy10858        264 L-LQVFVGK-GRTVIMTTQYIEEAND  287 (457)
Q Consensus       264 ~-i~~~~~~-g~TIIisTH~~~ea~~  287 (457)
                      . ++.+.+. +.++|++||+++.+..
T Consensus       133 ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286         133 AVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             HHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            7 7777665 8999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.40  E-value=1e-12  Score=121.89  Aligned_cols=67  Identities=30%  Similarity=0.432  Sum_probs=54.6

Q ss_pred             CCCCCChhHHHHHHHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        219 PVKYLSGGQKRRLSFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      +...+|.|+||.+.++.++...+   .++++|||-++|.|..++.+++++....+.+.-||+|||+...+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            45667999999999998888766   89999999999999999999999877655588999999997643

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.39  E-value=4.3e-12  Score=139.42  Aligned_cols=144  Identities=23%  Similarity=0.361  Sum_probs=112.9

Q ss_pred             CCCCHHHHHHHhhhhc--CCCHHHHHHHHHHH------HhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcC--CceEE
Q psy10858        178 GELTIKETLNFFGMIY--GMDESIWLFQMRKY------SHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHK--PQLII  245 (457)
Q Consensus       178 ~~lTV~EnL~~~~~l~--g~~~~~~~~~~~~l------l~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~--P~lLI  245 (457)
                      ..|++.+.+.|+..+.  ..........+.++      +-.+||..  ++|...+|||||.||+-||..+-.+  -=+++
T Consensus       427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV  506 (935)
T COG0178         427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYV  506 (935)
T ss_pred             hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence            3567777777776553  11111112222222      23456764  6999999999999999999998654  35789


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHH
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      ||||+.||-+.--+++.+.++.+++.|-|+|+|.||.+.+..||+|+=|      +.|+|+++|+|+++++..  .++-.
T Consensus       507 LDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~--~SlTG  584 (935)
T COG0178         507 LDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP--ESLTG  584 (935)
T ss_pred             ecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC--cchhh
Confidence            9999999999999999999999999999999999999999999999876      689999999999999763  46777


Q ss_pred             HHHh
Q psy10858        320 VFYK  323 (457)
Q Consensus       320 ~f~~  323 (457)
                      .|+.
T Consensus       585 ~YLs  588 (935)
T COG0178         585 QYLS  588 (935)
T ss_pred             Hhhc
Confidence            7764

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.39  E-value=3.6e-12  Score=123.98  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTL-LKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTL-Lk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +.++++.+.+++           .+++|++++|.|+|||||||| ++++.++.++...                    +.
T Consensus         8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------------~~   56 (230)
T PRK08533          8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------------VS   56 (230)
T ss_pred             EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------------EE
Confidence            566777777765           279999999999999999999 7999988764322                    23


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh----cCCceE
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL----HKPQLI  244 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl----~~P~lL  244 (457)
                      |+..      +.|..+.+..... .|.+-+.       +...=.+...+-. ..+|+++.++-.+++.+-    .+|+++
T Consensus        57 yi~~------e~~~~~~~~~~~~-~g~~~~~-------~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~l  121 (230)
T PRK08533         57 YVST------QLTTTEFIKQMMS-LGYDINK-------KLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVI  121 (230)
T ss_pred             EEeC------CCCHHHHHHHHHH-hCCchHH-------HhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEE
Confidence            4332      1233333332211 2222111       0000000001111 236666655544444333    369999


Q ss_pred             EEeCCCCCC----CHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q psy10858        245 ILDEPCVGV----DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE  284 (457)
Q Consensus       245 ILDEPTsGL----Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~e  284 (457)
                      ++||||+++    |+..++.++++++.+++.|.|++++ |++..
T Consensus       122 VIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~  164 (230)
T PRK08533        122 IIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE  164 (230)
T ss_pred             EEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence            999999999    8888899999988777778876664 55543

>PRK13695 putative NTPase; Provisional

Probab=99.37  E-value=3.9e-13  Score=124.33  Aligned_cols=82  Identities=17%  Similarity=0.119  Sum_probs=64.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHhhcCCceEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDE--PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       217 ~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE--PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      .+....+||+++-++.+++..+.+|++|++||  |+.++|+..    .+.+..+.+.|.++|+++|+-.....+|+|..+
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~  148 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSR  148 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECchhhHHHHHHHhcc
Confidence            45566799999999999999999999999999  444555443    444444446689999999995444569999999


Q ss_pred             eCCeEEEe
Q psy10858        295 YKGRIIAQ  302 (457)
Q Consensus       295 ~~GkI~~~  302 (457)
                      .+|+|+..
T Consensus       149 ~~~~i~~~  156 (174)
T PRK13695        149 PGGRVYEL  156 (174)
T ss_pred             CCcEEEEE
Confidence            99999765

>PRK10869 recombination and repair protein; Provisional

Probab=99.37  E-value=1.7e-12  Score=141.17  Aligned_cols=76  Identities=22%  Similarity=0.310  Sum_probs=69.4

Q ss_pred             CCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCC
Q psy10858        222 YLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKG  297 (457)
Q Consensus       222 ~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~G  297 (457)
                      .|||||+||++||++++.    +|+++|||||++|||+..+..++++++.+. ++.+||+|||++..+..||+++.+.++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~~~ad~~~~v~k~  508 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVAGCGHQHFFVSKE  508 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            489999999999999997    589999999999999999999999988875 479999999999988889999999875


Q ss_pred             e
Q psy10858        298 R  298 (457)
Q Consensus       298 k  298 (457)
                      .
T Consensus       509 ~  509 (553)
T PRK10869        509 T  509 (553)
T ss_pred             c
Confidence            3

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.36  E-value=2.1e-12  Score=135.92  Aligned_cols=171  Identities=16%  Similarity=0.076  Sum_probs=125.4

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++.+.++..|..+ ..+++.+ |++.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+..            
T Consensus       129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------  194 (432)
T PRK06793        129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------  194 (432)
T ss_pred             CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence            357778888888653 6788885 99999999999999999999999999999999998876655321            


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-------cC
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-------HK  240 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-------~~  240 (457)
                                  .+|.|.+.......++...            .    .=....+.|.|+|+|++.+.+.+       ++
T Consensus       195 ------------~ev~e~~~~~l~~~gl~~t------------v----vv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~  246 (432)
T PRK06793        195 ------------REVKDFIRKELGEEGMRKS------------V----VVVATSDESHLMQLRAAKLATSIAEYFRDQGN  246 (432)
T ss_pred             ------------ccHHHHHHHHhhhccccee------------E----EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence                        3555554321111111100            0    01245678999999999999988       89


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~  305 (457)
                      +-+|++|+||...|+.  ++++..+...-..|.+..+.||....++++.+   ..+|.|.+..+.
T Consensus       247 ~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv  306 (432)
T PRK06793        247 NVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV  306 (432)
T ss_pred             cEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence            9999999999999996  66666665554458899998995444555433   478998777654

>PRK03918 chromosome segregation protein; Provisional

Probab=99.35  E-value=2.1e-12  Score=146.59  Aligned_cols=79  Identities=30%  Similarity=0.481  Sum_probs=70.0

Q ss_pred             CCCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       217 ~~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                      ++++..|||||+|      |++||++++.+|+++||||||+|||+..+..+.+++..+.+.+.+||++||+++....||+
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~  862 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY  862 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence            4678999999999      4555667889999999999999999999999999987766668899999999987777999


Q ss_pred             EEEEe
Q psy10858        291 VAFLY  295 (457)
Q Consensus       291 i~im~  295 (457)
                      +++|.
T Consensus       863 ~~~l~  867 (880)
T PRK03918        863 VIRVS  867 (880)
T ss_pred             EEEEE
Confidence            99998

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.34  E-value=7e-12  Score=115.81  Aligned_cols=142  Identities=16%  Similarity=0.059  Sum_probs=96.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE  197 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~G-ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~  197 (457)
                      ++.|.||.|+|||||.-.++- ..+.        |            ..+.|+.=      +.|..+.+..... .|++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~--------g------------~~v~~~s~------e~~~~~~~~~~~~-~g~~~   53 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLAR--------G------------EPGLYVTL------EESPEELIENAES-LGWDL   53 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHC--------C------------CcEEEEEC------CCCHHHHHHHHHH-cCCCh
Confidence            367899999999998765432 2221        1            12334431      2244433332222 24442


Q ss_pred             HHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCC---HHHHHHHHHHHHH
Q psy10858        198 SIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVD---PLVRKRMWDLLQV  267 (457)
Q Consensus       198 ~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLD---p~~r~~i~~~i~~  267 (457)
                      .+        +...+. ...+..+..+|+|++|      +...+.+...+|+++++|||++.+|   +..+..+++++..
T Consensus        54 ~~--------l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~  125 (187)
T cd01124          54 ER--------LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA  125 (187)
T ss_pred             HH--------HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence            21        112232 2256778899999998      5666666778999999999999999   8888888888888


Q ss_pred             HHhCCcEEEEEcCChhH---------Hhc-cCeEEEEe
Q psy10858        268 FVGKGRTVIMTTQYIEE---------AND-ASEVAFLY  295 (457)
Q Consensus       268 ~~~~g~TIIisTH~~~e---------a~~-~dri~im~  295 (457)
                      +++.|.|+|+++|+...         +.. ||.++.|+
T Consensus       126 l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         126 LKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             HHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence            88889999999998764         444 89888886

A related protein is found in archaea.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.31  E-value=5e-12  Score=127.97  Aligned_cols=144  Identities=16%  Similarity=0.160  Sum_probs=100.5

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHh
Q psy10858        110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFF  189 (457)
Q Consensus       110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~  189 (457)
                      +++.++.|+.++|.|++|||||||+++|+|+++++.|.+.+.+  ..+..... +..+++..+...-             
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~~-------------  200 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGGQ-------------  200 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCCC-------------
Confidence            4577889999999999999999999999999999999888742  21111100 1223322221000             


Q ss_pred             hhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858        190 GMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       190 ~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~  269 (457)
                                                   .....+    ..-.++.+|-.+|+++++|||.+       .+++++++...
T Consensus       201 -----------------------------~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~  240 (308)
T TIGR02788       201 -----------------------------GLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN  240 (308)
T ss_pred             -----------------------------CcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh
Confidence                                         000011    11245667788999999999996       45677776655


Q ss_pred             hCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858        270 GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       270 ~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ..+.+++.|+|..+.....+|+..|..|++.+.|.+.+..
T Consensus       241 ~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       241 TGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             cCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence            4344679999999966678999999999999988888775

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.31  E-value=1.1e-11  Score=141.42  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=68.4

Q ss_pred             CCCCCCChhHHHHHHH------HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH-HHhC-C-cEEEEEcCChhHHhcc
Q psy10858        218 RPVKYLSGGQKRRLSF------TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV-FVGK-G-RTVIMTTQYIEEANDA  288 (457)
Q Consensus       218 ~~~~~LSGGqkQRlsL------A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~-g-~TIIisTH~~~ea~~~  288 (457)
                      ..+..||||||+|++|      |++|+.+|++++|||||+|||+..+..+.+++.. ++.. | .|||++||+++.+..|
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~  876 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA  876 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence            4688999999999976      4899999999999999999999999999999764 3333 3 4899999999988889


Q ss_pred             CeEEEEe
Q psy10858        289 SEVAFLY  295 (457)
Q Consensus       289 dri~im~  295 (457)
                      |+++.+.
T Consensus       877 d~ii~~~  883 (895)
T PRK01156        877 DVAYEVK  883 (895)
T ss_pred             CeEEEEE
Confidence            9999997

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.28  E-value=9.7e-12  Score=144.16  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhhc--------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858        216 LERPVKYLSGGQKRRLSFTIAILH--------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND  287 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA~ALl~--------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~  287 (457)
                      .++++.+|||||+++++||+||+.        +|++|||||||+|||+.+++.+++.+..+.+.|+||+||||..+..+.
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence            358899999999999999999995        899999999999999999999999998888889999999998777776


Q ss_pred             -cCeEEEEeC
Q psy10858        288 -ASEVAFLYK  296 (457)
Q Consensus       288 -~dri~im~~  296 (457)
                       ..+|.|-..
T Consensus      1023 i~~qi~V~k~ 1032 (1047)
T PRK10246       1023 IPVQIKVKKI 1032 (1047)
T ss_pred             ccceEEEEEC
Confidence             567777654

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.26  E-value=1.2e-10  Score=131.97  Aligned_cols=69  Identities=26%  Similarity=0.409  Sum_probs=61.1

Q ss_pred             hcCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh----------ccCeEEEEeCCeEEEecChh
Q psy10858        238 LHKPQLIILDEPCVGV-DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN----------DASEVAFLYKGRIIAQDSPD  306 (457)
Q Consensus       238 l~~P~lLILDEPTsGL-Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~----------~~dri~im~~GkI~~~gs~~  306 (457)
                      .++|+++++|||+.+| ||..++.+.+.++..++.|.+++++||+++.+.          .|+++++|.+|++...+..+
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~  729 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTRE  729 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchHH
Confidence            5799999999999999 799999999998888888999999999999873          58999999999987666443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.24  E-value=1.6e-11  Score=130.93  Aligned_cols=151  Identities=23%  Similarity=0.299  Sum_probs=104.9

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE  184 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E  184 (457)
                      .++++.++.+++|.+++|+||||+||||++..|++.+....|.                 .+|+++.++.   ...++.|
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt---~RigA~E  303 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS---YRIGGHE  303 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc---cchhHHH
Confidence            3567788888999999999999999999999999877555442                 2588888876   3578999


Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHH-HHHHHHHhhcCC-----ceEEEeCCCCCCCHHH
Q psy10858        185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKR-RLSFTIAILHKP-----QLIILDEPCVGVDPLV  257 (457)
Q Consensus       185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQ-RlsLA~ALl~~P-----~lLILDEPTsGLDp~~  257 (457)
                      +|.+++.++|++........+......++.. ....+.+...+++- .+.-+.+++.++     .+|+||.++.+.|   
T Consensus       304 QLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~---  380 (484)
T PRK06995        304 QLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT---  380 (484)
T ss_pred             HHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---
Confidence            9999999988765433333444445556643 34556665444432 234455555555     7899999998833   


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEcCC
Q psy10858        258 RKRMWDLLQVFVGKGRTVIMTTQY  281 (457)
Q Consensus       258 r~~i~~~i~~~~~~g~TIIisTH~  281 (457)
                         +.+.++.....+.+=+|.|+-
T Consensus       381 ---l~~i~~~f~~~~~~g~IlTKl  401 (484)
T PRK06995        381 ---LNEVVQAYRGPGLAGCILTKL  401 (484)
T ss_pred             ---HHHHHHHhccCCCCEEEEeCC
Confidence               555555555566766666773

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.20  E-value=8.5e-11  Score=104.35  Aligned_cols=130  Identities=19%  Similarity=0.121  Sum_probs=84.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES  198 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~  198 (457)
                      ++.|.|+||+||||+++.+++...+..|.+.+.+.+.....                      ..+.+..      ... 
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~----------------------~~~~~~~------~~~-   51 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE----------------------LTERLIG------ESL-   51 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH----------------------HHHHHhh------hhh-
Confidence            46899999999999999999988776666655433221100                      1111100      000 


Q ss_pred             HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCC----------CCCCHHHHHHHHHHHHHH
Q psy10858        199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPC----------VGVDPLVRKRMWDLLQVF  268 (457)
Q Consensus       199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPT----------sGLDp~~r~~i~~~i~~~  268 (457)
                            ....+.+.+  ........+.++.+++..+++...+|+++++||++          ++.|...++.+.++....
T Consensus        52 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  123 (165)
T cd01120          52 ------KGALDNLII--VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA  123 (165)
T ss_pred             ------ccccccEEE--EEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                  000001111  11222344566667888999999999999999999          456667778888887777


Q ss_pred             HhCCcEEEEEcCChhHH
Q psy10858        269 VGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       269 ~~~g~TIIisTH~~~ea  285 (457)
                      ++.+.|||+++|.....
T Consensus       124 ~~~~~~vv~~~~~~~~~  140 (165)
T cd01120         124 RKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             hcCCceEEEEEecCCcc
Confidence            77799999999987544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.20  E-value=2.3e-11  Score=140.51  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=69.3

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858        216 LERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV  291 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri  291 (457)
                      .+..+..||||||||++||++++    ..|+++||||||+|||+..+..|++++..+.+ +.+||+|||++..+..||++
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhH
Confidence            35688999999999999999984    67799999999999999999999999877654 57899999999988779997


Q ss_pred             EEEe
Q psy10858        292 AFLY  295 (457)
Q Consensus       292 ~im~  295 (457)
                      +.+.
T Consensus      1162 ~~~~ 1165 (1179)
T TIGR02168      1162 YGVT 1165 (1179)
T ss_pred             eeee
Confidence            6553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=99.14  E-value=6.7e-11  Score=140.10  Aligned_cols=70  Identities=20%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCcEEEEEcCChhHHh
Q psy10858        218 RPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-----GKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       218 ~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-----~~g~TIIisTH~~~ea~  286 (457)
                      ...+.|||||||      |++||+||+.+|++|+|||||+|||+..+..+.+.+..+.     ..|.|||++||+++++.
T Consensus      1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606      1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred             CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence            345789999999      9999999999999999999999999999999998865542     24889999999999885


Q ss_pred             c
Q psy10858        287 D  287 (457)
Q Consensus       287 ~  287 (457)
                      .
T Consensus      1275 ~ 1275 (1311)
T TIGR00606      1275 L 1275 (1311)
T ss_pred             H
Confidence            3

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=99.08  E-value=2.4e-10  Score=130.16  Aligned_cols=80  Identities=24%  Similarity=0.304  Sum_probs=69.2

Q ss_pred             CCCCCCChhHHH------HHHHHHHhhcC-----C-ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEcCChhH
Q psy10858        218 RPVKYLSGGQKR------RLSFTIAILHK-----P-QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQYIEE  284 (457)
Q Consensus       218 ~~~~~LSGGqkQ------RlsLA~ALl~~-----P-~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~-TIIisTH~~~e  284 (457)
                      ..+..||||||+      |+++|++++.+     | +++||||||++||+..+..+.+++..+...|. +||++||+++.
T Consensus       777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~  856 (880)
T PRK02224        777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL  856 (880)
T ss_pred             cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH
Confidence            347799999999      89999998864     3 67999999999999999999999887766565 89999999999


Q ss_pred             HhccCeEEEEeCC
Q psy10858        285 ANDASEVAFLYKG  297 (457)
Q Consensus       285 a~~~dri~im~~G  297 (457)
                      +..||+++.|...
T Consensus       857 ~~~ad~~~~~~~~  869 (880)
T PRK02224        857 VGAADDLVRVEKD  869 (880)
T ss_pred             HHhcCeeEEeecC
Confidence            8889999999643

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.05  E-value=2.9e-10  Score=131.82  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEE
Q psy10858        217 ERPVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVA  292 (457)
Q Consensus       217 ~~~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~  292 (457)
                      .+.+..||||||++++||++|+.    .|+++|||||++|||+..+..+++++....+ +.++|++||+......||+++
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence            45678999999999999999985    6899999999999999999999999877643 578999999998777899987


Q ss_pred             EEeC
Q psy10858        293 FLYK  296 (457)
Q Consensus       293 im~~  296 (457)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            6653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.05  E-value=5.2e-11  Score=126.10  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=54.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQEL  174 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~  174 (457)
                      ..||++|||+|++||+++|+|||||||||||+  .|+..|++| +|.++|.++...+.... ..+-+|+|+.
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-~~LR~VFQ~f   87 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-ETLDEIFDGF   87 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-HHHHHHHHhh
Confidence            45899999999999999999999999999999  788888888 79999998865432221 1111788865

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.01  E-value=2.5e-09  Score=103.55  Aligned_cols=141  Identities=18%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIV-GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM  191 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~  191 (457)
                      -+++|.++.|.|++|+|||||...++ +... ..                   .++.|+..+.      +..+.+.- +.
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g-------------------~~~~y~~~e~------~~~~~~~~-~~   73 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG-------------------KKVYVITTEN------TSKSYLKQ-ME   73 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC-------------------CEEEEEEcCC------CHHHHHHH-HH
Confidence            58999999999999999999998774 2221 11                   2344444321      22222211 11


Q ss_pred             hcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhc--CCceEEEeCCCCC---CCHHHHHHHHHHHH
Q psy10858        192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH--KPQLIILDEPCVG---VDPLVRKRMWDLLQ  266 (457)
Q Consensus       192 l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~--~P~lLILDEPTsG---LDp~~r~~i~~~i~  266 (457)
                      .++++-.+..  ....+..+.+.  -......|.++++.+..+..++.  +|+++++||||+.   .|+.....+.+.++
T Consensus        74 ~~g~~~~~~~--~~g~l~i~~~~--~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~  149 (234)
T PRK06067         74 SVKIDISDFF--LWGYLRIFPLN--TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAK  149 (234)
T ss_pred             HCCCChhHHH--hCCCceEEecc--ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHH
Confidence            1233211100  00001111111  12234567899999999999997  9999999999964   45555555555555


Q ss_pred             HHHhCCcEEEEEcCChhH
Q psy10858        267 VFVGKGRTVIMTTQYIEE  284 (457)
Q Consensus       267 ~~~~~g~TIIisTH~~~e  284 (457)
                      .+++.|.|+++++|...+
T Consensus       150 ~l~~~g~tvllt~~~~~~  167 (234)
T PRK06067        150 NLVDLGKTILITLHPYAF  167 (234)
T ss_pred             HHHhCCCEEEEEecCCcC
Confidence            556779999999998654

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.00  E-value=1.8e-09  Score=102.59  Aligned_cols=118  Identities=18%  Similarity=0.197  Sum_probs=76.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDE  197 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~  197 (457)
                      ++.|.||+||||||+++.|.+.+.+ ..|.|...+.++.. .   .....+++.|...                      
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~---~~~~~~~i~q~~v----------------------   56 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-V---HESKRSLINQREV----------------------   56 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-c---ccCccceeeeccc----------------------
Confidence            6889999999999999999888864 45777665543311 0   0011122222110                      


Q ss_pred             HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy10858        198 SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM  277 (457)
Q Consensus       198 ~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi  277 (457)
                                    +     .....++.      ++++||..+|+++++|||.   |+..   ++..++. ...|..++.
T Consensus        57 --------------g-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~-a~~G~~v~~  104 (198)
T cd01131          57 --------------G-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLET---IRLALTA-AETGHLVMS  104 (198)
T ss_pred             --------------C-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHH-HHcCCEEEE
Confidence                          0     00011111      4789999999999999996   5553   3333443 356899999


Q ss_pred             EcCChhHHhccCeEEEE
Q psy10858        278 TTQYIEEANDASEVAFL  294 (457)
Q Consensus       278 sTH~~~ea~~~dri~im  294 (457)
                      |+|..+.+...+|++.|
T Consensus       105 t~Ha~~~~~~~~Rl~~l  121 (198)
T cd01131         105 TLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             EecCCcHHHHHhHHHhh
Confidence            99999877778887666

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.00  E-value=2.4e-09  Score=100.98  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=67.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858        217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLY  295 (457)
Q Consensus       217 ~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~  295 (457)
                      .+.....|-|+-=---+.+.+ ++--+.|||||-++|-|.-+-.+...++.+.+.|.-|||+||..-.... ..+|+-++
T Consensus       124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence            445667899998766666666 4578999999999999999999999999998999999999999876655 56888887


Q ss_pred             CCeE
Q psy10858        296 KGRI  299 (457)
Q Consensus       296 ~GkI  299 (457)
                      .+.+
T Consensus       203 ~~g~  206 (233)
T COG3910         203 ESGI  206 (233)
T ss_pred             cCCc
Confidence            7654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.95  E-value=5.8e-10  Score=105.04  Aligned_cols=114  Identities=17%  Similarity=0.169  Sum_probs=68.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES  198 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~  198 (457)
                      ++||.||||||||||.++|.+++  ..|.+.+.+.+.                    ++..++..+........++.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~--------------------~~~~~~~~~~~~~~~~~~~~~~~   58 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS--------------------YYKDLSHEELEERKNNNYDHPDA   58 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc--------------------cccccccccHHHhccCCCCCCCc
Confidence            58999999999999999999998  334444433321                    11111221211111111111111


Q ss_pred             HHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHH
Q psy10858        199 IWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLV  257 (457)
Q Consensus       199 ~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~  257 (457)
                      ...+...+.+..+... ..+.+..++|.|++++..+   .++.|+++|+|+|+.+.++..
T Consensus        59 ~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~  115 (198)
T cd02023          59 FDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL  115 (198)
T ss_pred             ccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence            1112233344444442 2566778999999876655   578899999999999998743

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.95  E-value=7.1e-10  Score=117.06  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE---EEcCccCCCCc------hhhhcCcEEEEcCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI---WVLGGHPASIY------HKTAGSKVGYMPQEL  174 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I---~i~G~~~~~~~------~~~~r~~IGyvpQ~~  174 (457)
                      ..+++++ |+|.+|++++|+|+||||||||+++|+|+.+++.+.+   -..|.++....      ....+..++|++|+.
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~  221 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE  221 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence            6799999 9999999999999999999999999999999886433   33333332111      012345799999999


Q ss_pred             CCCCCCCHHHHHHHhhhhcC
Q psy10858        175 AMFGELTIKETLNFFGMIYG  194 (457)
Q Consensus       175 ~L~~~lTV~EnL~~~~~l~g  194 (457)
                      +.+..+++.+++.+.+.+++
T Consensus       222 s~~~rl~a~e~a~~iAEyfr  241 (434)
T PRK07196        222 SPLMRIKATELCHAIATYYR  241 (434)
T ss_pred             ChhhhHHHHHHHHHHHHHhh
Confidence            99999999999988777653

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.93  E-value=3.5e-10  Score=108.75  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=81.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH--
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF--  188 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~--  188 (457)
                      -+++|+++.|.|++|+|||||...++  ++ .+..+-+++....... ......+.+|+.+|+......+.+.+.+..  
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~-~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~   93 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRE-SIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK   93 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHH-HHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence            58999999999999999999988654  44 4455567775532211 101112345555554322222222221100  


Q ss_pred             --hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Q psy10858        189 --FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ  266 (457)
Q Consensus       189 --~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~  266 (457)
                        .....+.+.++...++.++.+..+..                  ..++++-.+..+++|||.     ..++.++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~vvIDsl~~l~~~~~~-----~~r~~~~~l~~  150 (229)
T TIGR03881        94 EDEWSLRELSIEELLNKVIEAKKYLGYG------------------HARLVIDSMSAFWLDKPA-----MARKYSYYLKR  150 (229)
T ss_pred             ccccccccCCHHHHHHHHHHHHHhhccC------------------ceEEEecCchhhhccChH-----HHHHHHHHHHH
Confidence              00001222233333333333222110                  023334444444445542     23455566666


Q ss_pred             HHHhCCcEEEEEcCChh--------HHhc-cCeEEEEe
Q psy10858        267 VFVGKGRTVIMTTQYIE--------EAND-ASEVAFLY  295 (457)
Q Consensus       267 ~~~~~g~TIIisTH~~~--------ea~~-~dri~im~  295 (457)
                      .+++.|+|+|+++|...        .++. ||.|+.|+
T Consensus       151 ~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       151 VLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             HHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            66778999999999654        1333 67777776

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.91  E-value=3.5e-08  Score=83.68  Aligned_cols=118  Identities=27%  Similarity=0.257  Sum_probs=81.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQ-GEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG  194 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-G~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g  194 (457)
                      +|..+.|.||+|+||||+++.|+..+.... +-+++............  ..                            
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ--LL----------------------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHH--HH----------------------------
Confidence            467899999999999999999999987654 44555443221111000  00                            


Q ss_pred             CCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH------HHHHH
Q psy10858        195 MDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD------LLQVF  268 (457)
Q Consensus       195 ~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~------~i~~~  268 (457)
                                        ............+++..+..+++|--..|.++++||+..-.+.........      .....
T Consensus        51 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~  112 (148)
T smart00382       51 ------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK  112 (148)
T ss_pred             ------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHH
Confidence                              000122345678888888888888888899999999999999888877654      22233


Q ss_pred             HhCCcEEEEEcCC
Q psy10858        269 VGKGRTVIMTTQY  281 (457)
Q Consensus       269 ~~~g~TIIisTH~  281 (457)
                      ...+..+|.++|.
T Consensus       113 ~~~~~~~i~~~~~  125 (148)
T smart00382      113 SEKNLTVILTTND  125 (148)
T ss_pred             hcCCCEEEEEeCC
Confidence            3457888999884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.89  E-value=1.7e-08  Score=107.16  Aligned_cols=179  Identities=18%  Similarity=0.166  Sum_probs=110.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch--------hhhcCcEEEEcCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--------KTAGSKVGYMPQELA  175 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~--------~~~r~~IGyvpQ~~~  175 (457)
                      ..+++++ |++.+|+.++|+|+||+|||||+++|+|...++.|.+...|..-.+...        ....+-+-++.+...
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~  229 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ  229 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence            6799999 9999999999999999999999999999999999987776654322110        011122333333221


Q ss_pred             CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC--CCCC
Q psy10858        176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP--CVGV  253 (457)
Q Consensus       176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP--TsGL  253 (457)
                           +..+...  +...       .-.+.+.....|-..+ -...+|+-       .|+|+--  ==+.+.||  +.|.
T Consensus       230 -----~p~~r~~--~~~~-------a~t~AE~frd~G~~Vl-l~~DslTr-------~A~A~RE--isl~~ge~P~~~Gy  285 (440)
T TIGR01026       230 -----SPLLRLK--GAYV-------ATAIAEYFRDQGKDVL-LLMDSVTR-------FAMAQRE--IGLAAGEPPATKGY  285 (440)
T ss_pred             -----CHHHHHH--HHHH-------HHHHHHHHHHCCCCEE-EEEeChHH-------HHHHHHH--HHHhcCCCCccccc
Confidence                 1211111  0000       0111122211222110 01122321       2332210  00445675  4599


Q ss_pred             CHHHHHHHHHHHHHHHhCCc-------EEEEEcCChhHHhccCeEEEEeCCeEEEecChhhh
Q psy10858        254 DPLVRKRMWDLLQVFVGKGR-------TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       254 Dp~~r~~i~~~i~~~~~~g~-------TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l  308 (457)
                      ||.....++++++.....+.       ||++.+||+.+ ..+|++..+.+|+|+.+...++.
T Consensus       286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE-PIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc-chhhhhccccceEEEEecchhhC
Confidence            99999999999888766677       89999999832 24799999999999998877654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.84  E-value=7.2e-11  Score=126.56  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=99.3

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHH--HcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAI--VGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L--~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      -+++|.++.|.|++|||||||...+  .|.....+.-+++....... +.....+.+|+-.++..--.      ++.+  
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~-~l~~~~~~~G~~~~~~~~~g------~l~~--   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQ-DIIKNARSFGWDLQKLVDEG------KLFI--   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHH-HHHHHHHHcCCCHHHHhhcC------ceEE--
Confidence            4789999999999999999999865  56665556666664432211 11111234555444221000      0000  


Q ss_pred             hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHH--HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10858        191 MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFT--IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV  267 (457)
Q Consensus       191 ~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA--~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~  267 (457)
                        ......   .....+++.+++.. .++...++|+|++|||.|+  .+|...|+.+          +..++.++++++.
T Consensus        88 --~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~  152 (484)
T TIGR02655        88 --LDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVAR  152 (484)
T ss_pred             --EecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHH
Confidence              000000   00011222333322 4566788999999999999  6666665544          5788899999888


Q ss_pred             HHhCCcEEEEEcCChhH--------H-hc-cCeEEEEe
Q psy10858        268 FVGKGRTVIMTTQYIEE--------A-ND-ASEVAFLY  295 (457)
Q Consensus       268 ~~~~g~TIIisTH~~~e--------a-~~-~dri~im~  295 (457)
                      +++.|+|+|+|||++++        + +. ||.|++|+
T Consensus       153 L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       153 LKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            88889999999999865        2 33 79999887

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR00611 recf recF protein

Probab=98.84  E-value=4.1e-09  Score=109.36  Aligned_cols=63  Identities=24%  Similarity=0.425  Sum_probs=57.0

Q ss_pred             CCCChhHHHHHHHHHHhhc---------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858        221 KYLSGGQKRRLSFTIAILH---------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~ALl~---------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~  286 (457)
                      ..+|.||||++.||.+|+.         +|+|||||||+++||+..++.+++.+...   |.+||+|||+++.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence            4689999999999999999         99999999999999999999999997642   779999999987653

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.84  E-value=7e-09  Score=109.84  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=71.4

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC---ccCCCCch--
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---GHPASIYH--  160 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G---~~~~~~~~--  160 (457)
                      ....++.+++++.|..+ ..+++.++ +|.+||.++|+|+||||||||+++|+|+.+|+.|.|.+.|   .++.....  
T Consensus       136 ~p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~  213 (450)
T PRK06002        136 APPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT  213 (450)
T ss_pred             CCCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence            34679999999999754 78999996 9999999999999999999999999999999999998865   44332111  


Q ss_pred             --hhhcCcEEEEcCCCC
Q psy10858        161 --KTAGSKVGYMPQELA  175 (457)
Q Consensus       161 --~~~r~~IGyvpQ~~~  175 (457)
                        ...++.|+|++|.+.
T Consensus       214 l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        214 LADNLKKAVAVVATSDE  230 (450)
T ss_pred             HHHhhCCeEEEEEcCCC
Confidence              123467999999764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.80  E-value=5.6e-09  Score=98.01  Aligned_cols=82  Identities=21%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC--CCCCCCCHHH
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL--AMFGELTIKE  184 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~--~L~~~lTV~E  184 (457)
                      .+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-...   ..+..++++.|..  ..++..++.+
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   91 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNVEGSGEVTMAD   91 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCCCCCCccCHHH
Confidence            3445677899999999999999999999999999999999999966321111   1124566666544  4566788888


Q ss_pred             HHHHhhh
Q psy10858        185 TLNFFGM  191 (457)
Q Consensus       185 nL~~~~~  191 (457)
                      .+....+
T Consensus        92 ~l~~~lR   98 (186)
T cd01130          92 LLRSALR   98 (186)
T ss_pred             HHHHHhc
Confidence            8765444

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.80  E-value=1.5e-08  Score=116.33  Aligned_cols=79  Identities=27%  Similarity=0.423  Sum_probs=71.5

Q ss_pred             CCCCCCChhHHHHHHHHHHhh------cC--CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccC
Q psy10858        218 RPVKYLSGGQKRRLSFTIAIL------HK--PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS  289 (457)
Q Consensus       218 ~~~~~LSGGqkQRlsLA~ALl------~~--P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~d  289 (457)
                      +.+.+|||||+-.++||.||+      .+  -++|||||||..||+..++.+.+++..+...+.+|+||||+-+..+.+|
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~  890 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD  890 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence            688999999999998888875      45  6999999999999999999999999988877999999999988888999


Q ss_pred             eEEEEeC
Q psy10858        290 EVAFLYK  296 (457)
Q Consensus       290 ri~im~~  296 (457)
                      .++.+..
T Consensus       891 ~~i~V~k  897 (908)
T COG0419         891 VRIRVKK  897 (908)
T ss_pred             eEEEEEe
Confidence            9888764

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.77  E-value=2.4e-07  Score=105.91  Aligned_cols=55  Identities=29%  Similarity=0.462  Sum_probs=50.0

Q ss_pred             HHHHhhcCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGV-DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND  287 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGL-Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~  287 (457)
                      +++++..+|+++++|||+.+| ||..++.+.+.++..++.|.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            577888999999999999999 7999999999988888889999999999998753

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.75  E-value=2.6e-07  Score=104.97  Aligned_cols=50  Identities=32%  Similarity=0.493  Sum_probs=45.1

Q ss_pred             HhhcCCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        236 AILHKPQLIILDEPCVGVD-PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLD-p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .+.++|.++++|||...|| |..++.+.+.++..++.|.+++++||+++++
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~  688 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA  688 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            3457899999999999999 9999999999888888899999999999875

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.69  E-value=4.6e-08  Score=95.16  Aligned_cols=47  Identities=15%  Similarity=0.326  Sum_probs=38.2

Q ss_pred             HhhcCCceEEEeCCCCC------CCHHHHHHHHHHHHHHH-hCCcEEEEEcCChh
Q psy10858        236 AILHKPQLIILDEPCVG------VDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIE  283 (457)
Q Consensus       236 ALl~~P~lLILDEPTsG------LDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~  283 (457)
                      +..++|+++|+| |+++      +|+.....+++.+..+. +.|.|||+++|...
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            345899999999 7754      79999999999866654 45999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.66  E-value=8.3e-08  Score=98.76  Aligned_cols=123  Identities=19%  Similarity=0.228  Sum_probs=78.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI  192 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l  192 (457)
                      ..++.++.|.||+||||||+++.|.+.+. +..|.|...+.++...    .......+.|..                  
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------------  176 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------------  176 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------------
Confidence            35688999999999999999999998765 4467776654332110    000011111100                  


Q ss_pred             cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy10858        193 YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG  272 (457)
Q Consensus       193 ~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g  272 (457)
                                        .+.     ..  .+    -.-++++||-.+|+++++||+.   |+.+.....+   . ...|
T Consensus       177 ------------------vg~-----~~--~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---a-a~tG  220 (343)
T TIGR01420       177 ------------------VGL-----DT--LS----FANALRAALREDPDVILIGEMR---DLETVELALT---A-AETG  220 (343)
T ss_pred             ------------------cCC-----CC--cC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---H-HHcC
Confidence                              000     00  01    1124677888999999999997   8877654333   2 4569


Q ss_pred             cEEEEEcCChhHHhccCeEEEE
Q psy10858        273 RTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       273 ~TIIisTH~~~ea~~~dri~im  294 (457)
                      .+|+.|.|-.+.+...+|+.-|
T Consensus       221 h~v~~T~Ha~~~~~~~~Rl~~~  242 (343)
T TIGR01420       221 HLVFGTLHTNSAAQTIERIIDV  242 (343)
T ss_pred             CcEEEEEcCCCHHHHHHHHHHh
Confidence            9999999997766666776544

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.66  E-value=3.8e-08  Score=104.30  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=78.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcC---ccCCCCchhh---hcCcEEEE-----c
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLG---GHPASIYHKT---AGSKVGYM-----P  171 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G---~~~~~~~~~~---~r~~IGyv-----p  171 (457)
                      ..+++++ |++.+|+.++|+|+||+|||||+++|+|+.+. +.|.|.+.|   .++.......   ...+.+++     +
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~  230 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD  230 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence            5689998 99999999999999999999999999999854 456676645   3332211111   12345666     8


Q ss_pred             CCCC--CCCCCCHHHHHHHhhhhcCCC---HHHHHHHHHHHHhHcCCC-----C-CCCCCCCCC
Q psy10858        172 QELA--MFGELTIKETLNFFGMIYGMD---ESIWLFQMRKYSHVLKLP-----N-LERPVKYLS  224 (457)
Q Consensus       172 Q~~~--L~~~lTV~EnL~~~~~l~g~~---~~~~~~~~~~ll~~l~L~-----~-~~~~~~~LS  224 (457)
                      |++.  +.+.+ +...+.-+.+.+|..   ..+...++.++++.+++.     . ...+++.||
T Consensus       231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS  293 (442)
T PRK06315        231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS  293 (442)
T ss_pred             CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence            8773  33333 444444333344433   245567778888888883     1 456777766

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.63  E-value=4.6e-08  Score=116.38  Aligned_cols=63  Identities=32%  Similarity=0.489  Sum_probs=55.4

Q ss_pred             CCCCCCCChhHHHHHH----HHHH--------hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q psy10858        217 ERPVKYLSGGQKRRLS----FTIA--------ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI  282 (457)
Q Consensus       217 ~~~~~~LSGGqkQRls----LA~A--------Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~  282 (457)
                      ++.++.||||||||++    +|+|        +.++|++++|||||+|||+..+..+++++..+   |.++|||||.+
T Consensus      1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            4567999999999996    5655        55899999999999999999999999998665   78999999986

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.63  E-value=2.1e-07  Score=106.34  Aligned_cols=137  Identities=21%  Similarity=0.328  Sum_probs=87.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ..+=+|+++. +.+.++.|.|||++||||+||.++-..- +.-|                     .|||-..+   .+++
T Consensus       595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------------~~VPa~~a---~i~~  649 (854)
T PRK05399        595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------------SFVPAESA---RIGI  649 (854)
T ss_pred             ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------------Cceeccce---Eecc
Confidence            4567788888 7788999999999999999998764321 1111                     12222111   0111


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhc--CCceEEEeCC---CCCCCHHH
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILH--KPQLIILDEP---CVGVDPLV  257 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~--~P~lLILDEP---TsGLDp~~  257 (457)
                      .+.+  +                   .++|  ..|.....+|-=+.....++.+|-+  ++.++|||||   |+.+|.. 
T Consensus       650 ~d~I--~-------------------trig--a~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~-  705 (854)
T PRK05399        650 VDRI--F-------------------TRIG--ASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL-  705 (854)
T ss_pred             cCee--e-------------------eccC--cccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH-
Confidence            1111  0                   0111  1233445567777777777777655  8999999999   8889943 


Q ss_pred             HHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCe
Q psy10858        258 RKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       258 r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dr  290 (457)
                       ...|.+++.+.+. |.++|++||+.+....+++
T Consensus       706 -aia~aile~l~~~~~~~~l~aTH~~el~~l~~~  738 (854)
T PRK05399        706 -SIAWAVAEYLHDKIGAKTLFATHYHELTELEEK  738 (854)
T ss_pred             -HHHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence             3567777777665 5899999999665544443

>PLN03210 Resistant to P

Probab=98.62  E-value=1.4e-07  Score=110.99  Aligned_cols=143  Identities=18%  Similarity=0.209  Sum_probs=82.6

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH
Q psy10858        110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF  188 (457)
Q Consensus       110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~  188 (457)
                      +++..++++++||+|++|+|||||++++.+.+ ...+|.+++++..+...     ..  .+-.++..-+   .+...+  
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~-----~~--~~~~~~~~~~---~~~~~l--  267 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS-----ME--IYSSANPDDY---NMKLHL--  267 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc-----hh--hccccccccc---chhHHH--
Confidence            46778899999999999999999999996654 44589998865322110     00  0111111100   011001  


Q ss_pred             hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10858        189 FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF  268 (457)
Q Consensus       189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~  268 (457)
                                 ..+.+.++++..++     .+..+ ++.|+|      |.+++-+|+||+-    |.   ...|+.+...
T Consensus       268 -----------~~~~l~~il~~~~~-----~~~~~-~~~~~~------L~~krvLLVLDdv----~~---~~~l~~L~~~  317 (1153)
T PLN03210        268 -----------QRAFLSEILDKKDI-----KIYHL-GAMEER------LKHRKVLIFIDDL----DD---QDVLDALAGQ  317 (1153)
T ss_pred             -----------HHHHHHHHhCCCCc-----ccCCH-HHHHHH------HhCCeEEEEEeCC----CC---HHHHHHHHhh
Confidence                       01122333333322     22222 566666      3466778888883    32   2345554332


Q ss_pred             H---hCCcEEEEEcCChhHHhc--cCeEEEE
Q psy10858        269 V---GKGRTVIMTTQYIEEAND--ASEVAFL  294 (457)
Q Consensus       269 ~---~~g~TIIisTH~~~ea~~--~dri~im  294 (457)
                      .   ..|.+||+|||+...+..  +|+++-+
T Consensus       318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v  348 (1153)
T PLN03210        318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEV  348 (1153)
T ss_pred             CccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence            2   358899999999998853  6777655

syringae 6; Provisional

>PRK14079 recF recombination protein F; Provisional

Probab=98.60  E-value=8.9e-08  Score=98.83  Aligned_cols=77  Identities=17%  Similarity=0.327  Sum_probs=61.3

Q ss_pred             CCCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858        221 KYLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV  291 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri  291 (457)
                      ..+|+|||+++++|..|+         .+|++++||||+++||+..+..+++.+...   ..++|-+|   +....+|++
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t---~~~~~~~~~  335 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGT---EAPPGAALT  335 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcC---CCCCCCceE
Confidence            458999999999999999         899999999999999999999999887542   12333333   233458999


Q ss_pred             EEEeCCeEEEec
Q psy10858        292 AFLYKGRIIAQD  303 (457)
Q Consensus       292 ~im~~GkI~~~g  303 (457)
                      +.+.+|++.-+.
T Consensus       336 ~~~~~~~~~~~~  347 (349)
T PRK14079        336 LRIEAGVFTPEA  347 (349)
T ss_pred             EEEeccEecCCC
Confidence            999999875443

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.59  E-value=5.6e-08  Score=91.69  Aligned_cols=28  Identities=43%  Similarity=0.598  Sum_probs=26.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|++++|+||+|||||||+++|++..+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.56  E-value=8.9e-08  Score=89.70  Aligned_cols=78  Identities=19%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-MFGELTIKETLNFFGMIYGM  195 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~  195 (457)
                      |++++|+||||||||||+++|++...+   .+.+.+..+...........+++++|++. ....-...+.-.+++..||.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            789999999999999999999999876   57776665543322223356788888742 11111222333445666777


Q ss_pred             CH
Q psy10858        196 DE  197 (457)
Q Consensus       196 ~~  197 (457)
                      +.
T Consensus        79 ~~   80 (186)
T PRK10078         79 GI   80 (186)
T ss_pred             cH
Confidence            64

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.55  E-value=1.6e-07  Score=83.06  Aligned_cols=138  Identities=12%  Similarity=0.066  Sum_probs=73.9

Q ss_pred             EEEEcCCCccHHHHHHHHH--cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCC-CCCC-----------------CC
Q psy10858        120 FVLLGASSAGKTTLLKAIV--GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQE-LAMF-----------------GE  179 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~--Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~-~~L~-----------------~~  179 (457)
                      ++|+|++|||||||++.|+  +..++.+|++.. .......   ....  .++.-+ +.+-                 ..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~-t~~~~~~---~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~   75 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGK-TQLINFF---NVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEY   75 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCc-ceeEEEE---EccC--eEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence            6899999999999999999  667666665321 1000000   0000  111111 1110                 00


Q ss_pred             CCHHHHHHHhhhhcCC--CHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHh-----hcCCceEEEeCCC
Q psy10858        180 LTIKETLNFFGMIYGM--DESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAI-----LHKPQLIILDEPC  250 (457)
Q Consensus       180 lTV~EnL~~~~~l~g~--~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~AL-----l~~P~lLILDEPT  250 (457)
                      ++..+++.....+...  ........+.+.+...+.+.  ...+...+|++++++.....+.     ...|+++    |+
T Consensus        76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~  151 (170)
T cd01876          76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LF  151 (170)
T ss_pred             HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EE
Confidence            1122222211111111  11122233445555555542  2344667899988887666552     3456666    99


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy10858        251 VGVDPLVRKRMWDLLQV  267 (457)
Q Consensus       251 sGLDp~~r~~i~~~i~~  267 (457)
                      |++|+...+++++.+..
T Consensus       152 Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         152 SSLKGQGIDELRALIEK  168 (170)
T ss_pred             ecCCCCCHHHHHHHHHH
Confidence            99999999999988654

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.53  E-value=5.5e-08  Score=90.99  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN  187 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~  187 (457)
                      +||+++|+|+|||||||++++|+|++.+    ++++|.++.... ...+...|+.+|+...++..++..++.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-~~r~~~~g~~~~~~~~~~~~~~~~~~~   68 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-NIDKMSQGIPLTDEDRLPWLERLNDAS   68 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-HHHHHhcCCCCCcccchHHHHHHHHHH
Confidence            6999999999999999999999999887    578887664321 112224577777765555555555554

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.50  E-value=3.6e-06  Score=82.47  Aligned_cols=48  Identities=25%  Similarity=0.336  Sum_probs=38.4

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCcEEEEEcCChhHHh
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVG-KGRTVIMTTQYIEEAN  286 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~-~g~TIIisTH~~~ea~  286 (457)
                      .+..++|+||+..|=++.....+... ++.+.+ .+..+|++||+.+.++
T Consensus       121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            45789999999999999999888665 787776 4889999999998764

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.49  E-value=1.2e-06  Score=99.60  Aligned_cols=50  Identities=28%  Similarity=0.480  Sum_probs=44.3

Q ss_pred             hhcCCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858        237 ILHKPQLIILDEPCVGVD-PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLD-p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~  286 (457)
                      +-.+|+++++|||+.+|| |..++.+.+.++..++.|.+++++||+++++.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID  682 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence            346899999999999999 78889999998888888999999999998653

>TIGR00416 sms DNA repair protein RadA

Probab=98.47  E-value=2.2e-07  Score=99.22  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=78.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE-EEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE-IWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM  191 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~-I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~  191 (457)
                      -+.+|+++.|.|++|+|||||+..++.......+. +++.+++... .......++|+..++..++.             
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~-qi~~ra~rlg~~~~~l~~~~-------------  155 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ-QIKMRAIRLGLPEPNLYVLS-------------  155 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH-HHHHHHHHcCCChHHeEEcC-------------
Confidence            68999999999999999999999988766544344 3555433211 00000112222111100000             


Q ss_pred             hcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCC---------CHHHHHHH-
Q psy10858        192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGV---------DPLVRKRM-  261 (457)
Q Consensus       192 l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGL---------Dp~~r~~i-  261 (457)
                                                    +.+-  .+-...  +--.+|+++++|.-++=.         ++...+++ 
T Consensus       156 ------------------------------e~~~--~~I~~~--i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~  201 (454)
T TIGR00416       156 ------------------------------ETNW--EQICAN--IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECT  201 (454)
T ss_pred             ------------------------------CCCH--HHHHHH--HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHH
Confidence                                          0000  000111  112579999999765421         12223333 


Q ss_pred             HHHHHHHHhCCcEEEEEcCChhH--------Hhc-cCeEEEEeCCeE
Q psy10858        262 WDLLQVFVGKGRTVIMTTQYIEE--------AND-ASEVAFLYKGRI  299 (457)
Q Consensus       262 ~~~i~~~~~~g~TIIisTH~~~e--------a~~-~dri~im~~GkI  299 (457)
                      ..+.+..++.|.|+|+++|...+        ++. +|.|++|+.++.
T Consensus       202 ~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~  248 (454)
T TIGR00416       202 AELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRD  248 (454)
T ss_pred             HHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccCC
Confidence            33455567789999999997654        444 799999986653

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.44  E-value=1.1e-06  Score=97.30  Aligned_cols=110  Identities=18%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE--------EEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGE--------IWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~--------I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      ...+.+.|+||||+|||||.++|.++.++..|.        +.++|..+.. +...                   + .+-
T Consensus       173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~-------------------i-~~~  231 (615)
T TIGR02903       173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE-------------------V-TNP  231 (615)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH-------------------H-hHH
Confidence            345679999999999999999999998655443        4554432210 0000                   0 010


Q ss_pred             HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858        187 NFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL  265 (457)
Q Consensus       187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i  265 (457)
                      .     .+...+.........++..++.. .+..+.++|||                +|+||| +..||+..+..+.+.+
T Consensus       232 l-----lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L  289 (615)
T TIGR02903       232 L-----LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL  289 (615)
T ss_pred             h-----cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence            0     11111111223344466677754 57788899999                999999 8999999999999987


Q ss_pred             HH
Q psy10858        266 QV  267 (457)
Q Consensus       266 ~~  267 (457)
                      +.
T Consensus       290 e~  291 (615)
T TIGR02903       290 ED  291 (615)
T ss_pred             hh
Confidence            64

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.42  E-value=2.1e-07  Score=93.93  Aligned_cols=74  Identities=9%  Similarity=0.126  Sum_probs=55.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY  193 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~--p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~  193 (457)
                      .++||.||||||||||+++|.+++.  |++|.|.+.+.+....... .+...|++ |.....+.+++.+.+.+...++
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence            5899999999999999999999997  7889988766654332222 23346654 7777778888888887765543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.41  E-value=4e-07  Score=96.26  Aligned_cols=70  Identities=13%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---eEEEEcCccCCCCchh----hhcCcEEEEcCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ---GEIWVLGGHPASIYHK----TAGSKVGYMPQEL  174 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s---G~I~i~G~~~~~~~~~----~~r~~IGyvpQ~~  174 (457)
                      ..+++++ +++.+||+++|+|+||+|||||+++|++...++.   |.|...|.++......    ...+++++++...
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s  215 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS  215 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence            6799999 9999999999999999999999999999999887   8898888876532211    1236788887654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.37  E-value=4.1e-07  Score=88.11  Aligned_cols=74  Identities=18%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE----EEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGE----IWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~----I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      .+..++||.||||||||||+++|++++++++|.    |.+++-..   . .......|++++.. .+..+++.+.+.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~-~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~  105 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---D-NAVLDAHGLRPRKG-APETFDVAGLAALLR  105 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---C-HHHHHhcccccccC-CCCCCCHHHHHHHHH
Confidence            457899999999999999999999999999998    44443221   1 11223468877643 345677777666554


Q ss_pred             hhc
Q psy10858        191 MIY  193 (457)
Q Consensus       191 ~l~  193 (457)
                      .++
T Consensus       106 ~l~  108 (229)
T PRK09270        106 RLR  108 (229)
T ss_pred             HHH
Confidence            443

>TIGR00152 dephospho-CoA kinase

Probab=98.37  E-value=4.2e-07  Score=85.20  Aligned_cols=70  Identities=20%  Similarity=0.240  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH--Hh-ccCeEEEEeCC
Q psy10858        226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE--AN-DASEVAFLYKG  297 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e--a~-~~dri~im~~G  297 (457)
                      |+-+|..||.++..+|+.+..+|  +.+||..++.+++.+....+.|.+||+.+|.+.+  +. .||++++++.+
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            88999999999999999998887  8999999999999987766567899999999976  33 48999888654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.36  E-value=2.6e-07  Score=94.34  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=55.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC------chhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI------YHKTAGSKVGYMPQELAMFGELTIKETLN  187 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~------~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~  187 (457)
                      ++|++++|+||||+||||++..|++.+.+..|+|.+.+.+....      .....+..+++++|.....+..++++++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~  190 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ  190 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999999999999998888999988776321      11233567899998765555445566554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.33  E-value=6.4e-07  Score=90.04  Aligned_cols=85  Identities=22%  Similarity=0.248  Sum_probs=60.6

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCCC---C-CC
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELAM---F-GE  179 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L---~-~~  179 (457)
                      ++.+...+. |++++++|+||+|||||++.|.|...++.|+|..   .|...+...........|++.+.|.+   . ..
T Consensus       152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~  230 (287)
T cd01854         152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH  230 (287)
T ss_pred             HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence            444555555 5899999999999999999999999999999975   34333221111112336899999876   3 46


Q ss_pred             CCHHHHHHHhhhh
Q psy10858        180 LTIKETLNFFGMI  192 (457)
Q Consensus       180 lTV~EnL~~~~~l  192 (457)
                      ++..|...++..+
T Consensus       231 ~~~~~~~~~f~~~  243 (287)
T cd01854         231 IDPEELAHYFPEF  243 (287)
T ss_pred             CCHHHHHHHhHHH
Confidence            8888888776554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.33  E-value=5.9e-07  Score=95.10  Aligned_cols=66  Identities=12%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      .+.++.+.++..+..+ ..+++++ |+|.+||.++|+|+||+|||||+++|+|...++.|.+.+.|+.
T Consensus       127 p~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        127 PPAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             CCceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            3468888888888532 7899999 9999999999999999999999999999999999988877754

>TIGR00235 udk uridine kinase

Probab=98.32  E-value=2.1e-07  Score=88.62  Aligned_cols=29  Identities=24%  Similarity=0.240  Sum_probs=27.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      ++|+++||.|+||||||||++.|+|++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            68999999999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain

Probab=98.32  E-value=1.1e-06  Score=81.01  Aligned_cols=79  Identities=18%  Similarity=0.303  Sum_probs=60.1

Q ss_pred             hhH---hhhhhhcC---CCCCCCeEEEEeccCCcccccCCCCCCCCCCCCCcccCCcCchhhhHHHHhhccC-cccccCC
Q psy10858        360 FPV---AIFNATMG---SPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKD-TIKLKYF  432 (457)
Q Consensus       360 ~p~---~~~~~~i~---~d~~~l~~av~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~  432 (457)
                      +|+   ++|+++++   .+++++++||||.|.+....   +.               .-..|+++++.|+.+ .+... .
T Consensus        22 ~P~i~~~~~~~a~~~~~~~~~~lpvaVVd~D~s~~~~---~~---------------~~~~s~~l~~~l~~~~~~~~~-~   82 (164)
T TIGR03061        22 IPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYD---GK---------------TLNAGDDLVKELKKNDDLDWH-F   82 (164)
T ss_pred             HHHHHHHHHHHHHcCcccccCCCeEEEEECCCCCCcC---Cc---------------ccchHHHHHHHHhcCCCcceE-E
Confidence            476   66777764   78999999999999876320   00               013699999999877 22222 2


Q ss_pred             CCHHHHHHHhhcCceEEEEEcCCCC
Q psy10858        433 PDEESAEEALKNESLSLLLEGSPDL  457 (457)
Q Consensus       433 ~~~~~~~~~~~~g~~~~~~~~~~~~  457 (457)
                      .|.+||.+++++|++.++|.||+|+
T Consensus        83 ~~~~ea~~~l~~g~~~~~ivIP~~F  107 (164)
T TIGR03061        83 VSAKEAEKGLADGKYYMVITIPEDF  107 (164)
T ss_pred             cCHHHHHHHhHcCcEEEEEEECcch
Confidence            3999999999999999999999985

This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.30  E-value=1.3e-06  Score=89.51  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      -..++..|..+ ..+++++ |.+.+|+.++|+|+||+|||||+++|+|...++.|.+.+-|.+
T Consensus        46 R~~~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          46 RRPIDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             hccceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            33444455432 6799999 9999999999999999999999999999999999988776654

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.29  E-value=2.6e-06  Score=73.11  Aligned_cols=55  Identities=22%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEcCChh
Q psy10858        228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-----KGRTVIMTTQYIE  283 (457)
Q Consensus       228 kQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-----~g~TIIisTH~~~  283 (457)
                      .+......+...++.++++||.-.. ++.....+.+.+.....     .+..||++|+...
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556667777889999999998765 66667777777666532     5788999998765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.29  E-value=3.3e-07  Score=84.95  Aligned_cols=64  Identities=9%  Similarity=0.162  Sum_probs=44.1

Q ss_pred             HHHHHhHcCCCC--CCCCCCCCChhHHHHHH--HHHHhhc-CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy10858        204 MRKYSHVLKLPN--LERPVKYLSGGQKRRLS--FTIAILH-KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK  271 (457)
Q Consensus       204 ~~~ll~~l~L~~--~~~~~~~LSGGqkQRls--LA~ALl~-~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~  271 (457)
                      +.++++..+++.  .-.++..+|+|++|++.  ++.++-. +++++    |+|++|+...+.+++.+..+.++
T Consensus       127 i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        127 MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence            344455556542  34467779999999987  5555543 34443    99999999999999997665544

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.27  E-value=6.4e-07  Score=96.64  Aligned_cols=62  Identities=16%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP  155 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~  155 (457)
                      ..|+++.||.  ..+++++++.+..|+.++|+||||+|||||+++|.|+++|.+|++.+.+..+
T Consensus       187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            4588999988  7899999999999999999999999999999999999999999999877554

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.25  E-value=1.6e-06  Score=91.79  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=60.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch------hhhcCcEEEEcCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH------KTAGSKVGYMPQELAMF  177 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~------~~~r~~IGyvpQ~~~L~  177 (457)
                      ..+++++ |++.+|+.++|+|+||+|||||+++|+|...++.|.+...|.+-.....      .......+++.++.+.+
T Consensus       133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~  211 (422)
T TIGR02546       133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR  211 (422)
T ss_pred             ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence            6799999 9999999999999999999999999999999999999886654332210      00123467788888776


Q ss_pred             CCCCHH
Q psy10858        178 GELTIK  183 (457)
Q Consensus       178 ~~lTV~  183 (457)
                      +.++..
T Consensus       212 p~~~r~  217 (422)
T TIGR02546       212 PSLERL  217 (422)
T ss_pred             CHHHHH
Confidence            655433

>PRK01889 GTPase RsgA; Reviewed

Probab=98.25  E-value=1.5e-06  Score=90.02  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      ++.+.-.+++|++++|+|+||+|||||+++|+|...++.|+|.+++.....   ....+.+++++|...+++. .+..++
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~Dt-pG~~~~  260 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDT-PGMREL  260 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCC-Cchhhh
Confidence            566677788999999999999999999999999999999999997754321   2234679999999887753 455555


Q ss_pred             HH
Q psy10858        187 NF  188 (457)
Q Consensus       187 ~~  188 (457)
                      .+
T Consensus       261 ~l  262 (356)
T PRK01889        261 QL  262 (356)
T ss_pred             cc
Confidence            44

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.21  E-value=4.2e-06  Score=87.26  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW  149 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~  149 (457)
                      -+.+|+++.|.|++|+|||||+..++.......|.+.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~Vl  114 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVL  114 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            5899999999999999999999999887765545553

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.20  E-value=3.4e-06  Score=87.92  Aligned_cols=72  Identities=28%  Similarity=0.413  Sum_probs=54.0

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..++++.++.+++|++++|+||||+|||||+..|++......|                 ..+|+++..+..   .....
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----------------~~~V~lit~D~~---R~ga~  183 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG-----------------ASKVALLTTDSY---RIGGH  183 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CCeEEEEecccc---cccHH
Confidence            4567888899999999999999999999999999986521111                 135788876554   23677


Q ss_pred             HHHHHhhhhcCC
Q psy10858        184 ETLNFFGMIYGM  195 (457)
Q Consensus       184 EnL~~~~~l~g~  195 (457)
                      |.|..++...+.
T Consensus       184 EqL~~~a~~~gv  195 (374)
T PRK14722        184 EQLRIFGKILGV  195 (374)
T ss_pred             HHHHHHHHHcCC
Confidence            888877766654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.19  E-value=1.3e-06  Score=92.33  Aligned_cols=64  Identities=22%  Similarity=0.422  Sum_probs=44.8

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY  193 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~  193 (457)
                      +++|++++|+||||+|||||++.|+|...-..      |           ...+|++..+..-   ....|.+.+++.+.
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~------~-----------~~~v~~i~~d~~r---igalEQL~~~a~il  247 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRH------G-----------ADKVALLTTDSYR---IGGHEQLRIYGKLL  247 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhc------C-----------CCeEEEEecCCcc---hhHHHHHHHHHHHc
Confidence            47899999999999999999999999531100      0           1235666555422   35677788888877


Q ss_pred             CCCH
Q psy10858        194 GMDE  197 (457)
Q Consensus       194 g~~~  197 (457)
                      |++.
T Consensus       248 Gvp~  251 (420)
T PRK14721        248 GVSV  251 (420)
T ss_pred             CCce
Confidence            7653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		4e-16
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		4e-16
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		1e-15
1g29_1	372	Malk Length = 372		5e-14
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-14
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-13
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		6e-13
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		7e-13
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-12
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		3e-12
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		5e-12
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		6e-12
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		1e-11
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		2e-11
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		2e-11
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-11
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		3e-11
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		3e-11
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		5e-11
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-10
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		4e-10
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		6e-10
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		6e-10
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		1e-09
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-09
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-09
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-09
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		5e-09
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		1e-08
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		1e-08
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-08
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		2e-08
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-08
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		2e-08
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-08
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		3e-08
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-08
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-08
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		5e-08
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		1e-07
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		1e-07
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-07
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-07
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-07
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		3e-07
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		4e-07
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		4e-07
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-07
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		8e-07
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		8e-07
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-06
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		2e-06
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-06
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		3e-06
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		5e-06
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		7e-06
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		2e-05
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		2e-05
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-05
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-05
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-05
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		3e-05
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		4e-05
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		4e-05
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		4e-05
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		4e-05
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		4e-05
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		4e-05
3uwx_A	972	Crystal Structure Of Uvra-Uvrb Complex Length = 972		5e-05
3ux8_A	670	Crystal Structure Of Uvra Length = 670		5e-05
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		5e-05
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		6e-05
2r6f_A	972	Crystal Structure Of Bacillus Stearothermophilus Uv		7e-05
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		9e-05
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		1e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		2e-04
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-04
2vf7_A	842	Crystal Structure Of Uvra2 From Deinococcus Radiodu		3e-04
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		4e-04
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		4e-04
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		6e-04
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		7e-04

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           EF V +G S  GK+TLL+ I GL+ I+ G++++  G         A   VG + Q  A++
Sbjct: 30  EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIA 236
             L++ E ++F   + G  + +   ++ + + VL+L +L +R  K LSGGQ++R++    
Sbjct: 88  PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ-YIEEANDASEVAFL 294
           ++ +P + +LDEP   +D  +R +M  ++ ++    GRT+I  T   +E    A ++  L
Sbjct: 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
Query: 295 YKGRIIAQDSP 305
             GR+     P
Sbjct: 208 DAGRVAQVGKP 218

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           EF V +G S  GK+TLL+ I GL+ I+ G++++  G         A   VG + Q  A++
Sbjct: 30  EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIA 236
             L++ E ++F   + G  + +   ++ + + VL+L +L +R  K LSGGQ++R++    
Sbjct: 88  PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ-YIEEANDASEVAFL 294
           ++ +P + +LDEP   +D  +R +M  ++ ++    GRT+I  T   +E    A ++  L
Sbjct: 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
Query: 295 YKGRIIAQDSP 305
             GR+     P
Sbjct: 208 DAGRVAQVGKP 218

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           EF V +G S  GK+TLL+ I GL+ I+ G++++  G         A   VG + Q  A++
Sbjct: 30  EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIA 236
             L++ E ++F   + G  + +   ++ + + VL+L + L+R  K LSGGQ++R++    
Sbjct: 88  PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRM-WDLLQVFVGKGRTVIMTTQ-YIEEANDASEVAFL 294
           ++ +P + +LD+P   +D  +R +M  ++ ++    GRT+I  T   +E    A ++  L
Sbjct: 148 LVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
Query: 295 YKGRIIAQDSP 305
             GR+     P
Sbjct: 208 DAGRVAQVGKP 218

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPA-SIYHKTAGSKVGYMPQE 173
           EF +LLG S  GKTT L+ I GL+  S+G+I++   L   P   I+       +  + Q 
Sbjct: 30  EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLS 232
            A++  +T+ + + F   +  +       ++R+ + +L L  L  R  + LSGGQ++R++
Sbjct: 90  YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIEEANDAS 289
              AI+ KPQ+ ++DEP   +D  +R RM      LQ  +G   T+ +T   +E      
Sbjct: 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV-TTIYVTHDQVEAMTMGD 208
Query: 290 EVAFLYKGRIIAQDSPD 306
            +A + +G +    SPD
Sbjct: 209 RIAVMNRGVLQQVGSPD 225

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E   LLG S +GKTT+L+ I GL+  ++G++W+ G     +  +     VG + Q  A+F
Sbjct: 42  EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK--RNVGLVFQNYALF 99
Query: 178 GELTIKETLNFFGMIYG------MDESI--WLFQMRKYSHVLKLPNLERPVKYLSGGQKR 229
             +T+ + ++ FG+         MD  +   L  MR  S+  + P+       LSGGQ++
Sbjct: 100 QHMTVYDNVS-FGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------ELSGGQQQ 152
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEAND- 287
           R++   A+  +PQ+++ DEP   +D  +R+ +   + QV    G T +  T   EEA + 
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV 212
Query: 288 ASEVAFLYKGRIIAQDSPD 306
           A  V  L++G +    +P+
Sbjct: 213 ADRVLVLHEGNVEQFGTPE 231

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           +LG + +GK+TL+  I  L +  +G + V      ++  K     +  +PQE  +F   T
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-T 432
Query: 182 IKETLNFFGMIYGMDESIWLFQMRK-YSHVLKLP-----NLERPVKYLSGGQKRRLSFTI 235
           IKE L +       DE +   ++ + +  ++ LP      +ER  +  SGGQK+RLS   
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY 295
           A++ KP+++ILD+    VDP+  KR+ D L+ +  KG T  + TQ I  A  A ++  L+
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLH 551
Query: 296 KGRI 299
           +G++
Sbjct: 552 EGKV 555

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-- 175
           + +V++G + +GKTTLLK + GL   + GEI+ L G PA  +       VGY+ Q  +  
Sbjct: 38  KIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF-LDGSPADPF--LLRKNVGYVFQNPSSQ 93
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE--RPVKYLSGGQKRRLSF 233
           + G  T++E + F   I G+DES    +++K   ++ L  L    P+  LSGGQK+RL+ 
Sbjct: 94  IIGA-TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLN-LSGGQKQRLAI 151
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF 293
              +    + + LDEP   +DP  ++ ++ +L+    +G+ +I+ T  +E  +D   +  
Sbjct: 152 ASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILH 211
Query: 294 LYKGRI 299
           +  G I
Sbjct: 212 ISNGTI 217

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG-----SKVGYMPQ 172
           E   ++GAS  GKTTLL+ + G +    GEI + G    +I+ K         ++GY+ Q
Sbjct: 31  EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG---KTIFSKNTNLPVRERRLGYLVQ 87
Query: 173 ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQK 228
           E  +F  LT+   + + G+  G   +    + ++   +L+L  + E   +Y   LSGGQ+
Sbjct: 88  EGVLFPHLTVYRNIAY-GLGNGKGRTAQ--ERQRIEAMLELTGISELAGRYPHELSGGQQ 144
Query: 229 RRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-DLLQVFVGKGRTVIMTTQYIEEA-N 286
           +R +   A+   P+LI+LDEP   +D  +R+++  D++      G++ +  +   EEA  
Sbjct: 145 QRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ 204
Query: 287 DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD---------VFYKITNDDGTS------ 331
            A  +A + +GRI+   SP      Y  P   D         VF    N DGT+      
Sbjct: 205 YADRIAVMKQGRILQTASPHEL---YRQPADLDAALFIGEGIVFPAALNADGTADCRLGR 261
Query: 332 ----SGPPAET 338
               SG PA T
Sbjct: 262 LPVQSGAPAGT 272

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 3/210 (1%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E F L+G + AGKTT L+ I  L   S G + V G +     H+     + Y+P+E   +
Sbjct: 42  EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR-KLISYLPEEAGAY 100
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIA 236
             +   E L F    Y    S     + + + +  L   ++  V   S G  R+L    A
Sbjct: 101 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLY 295
           ++  P+L ILDEP  G+D L  + +  +L+    +G T+++++  + E       +A ++
Sbjct: 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 220
Query: 296 KGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325
            G I+   + +  K +Y    + +VF ++ 
Sbjct: 221 NGTIVETGTVEELKERYKAQNIEEVFEEVV 250

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM 176
           R++ VLLG + AGK+  L+ I G+    +GE+ + G     +  +  G  +G++PQ+ A+
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG--IGFVPQDYAL 81
Query: 177 FGELTIKETLNFFGMIYGMDESIW---------LFQMRKYSHVLKLPNLERPVKYLSGGQ 227
           F  L++     +  + YG+              + +    +H+L     +R    LSGG+
Sbjct: 82  FPHLSV-----YRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----DRKPARLSGGE 131
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM---TTQYIEE 284
           ++R++   A++ +P+L++LDEP   VD   +  + + L+ FV +   V +   T   IE 
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTHDLIEA 190
Query: 285 ANDASEVAFLYKGRIIAQ 302
           A  A EVA +  GRI+ +
Sbjct: 191 AMLADEVAVMLNGRIVEK 208

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPA-SIYHKTAGSKVGYMPQE 173
           EF VLLG S  GKTT L+ I GL+  ++G+I++   L   P   ++       V  + Q 
Sbjct: 33  EFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQS 92
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS 232
            A++   T+ + + F   +  + +     ++R+ +  L L   L R  + LSGGQ++R++
Sbjct: 93  YALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVA 152
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVR-KRMWDLLQVFVGKGRTVI-MTTQYIEEANDASE 290
              AI+ +P++ + DEP   +D  +R K   +L ++    G T I +T   +E       
Sbjct: 153 LGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDR 212
Query: 291 VAFLYKGRIIAQDSPD 306
           +A   KG +    +PD
Sbjct: 213 IAVXNKGELQQVGTPD 228

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKTAGSKVGYMP 171
           R +   L+GA+ AGKTT L AI GL    +G+I   G      PA + ++     +  +P
Sbjct: 31  RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXG---IALVP 87
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESI-----WLFQMRKYSHVLKLPNLERPVKYL--- 223
           +   +F ELT+ E L          E I     W+F +         P L+  +K L   
Sbjct: 88  EGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSL--------FPRLKERLKQLGGT 139
Query: 224 -SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
            SGG+++ L+   A+  +P+L+  DEP +G+ P++   +++++Q    +G T+++  Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           K  EF VLLG S  GKTT L+ I GL+  ++G I+   G     Y       +  + Q  
Sbjct: 35  KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF--GDRDVTYLPPKDRNISMVFQSY 92
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
           A++  +T+ E + F   I    +     ++R  + +L++   L R    LSGGQ++R++ 
Sbjct: 93  AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV 152
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR--TVIMTTQYIEEANDASEV 291
             AI+ +P ++++DEP   +D  +R  M   ++    K +  T+ +T   +E       +
Sbjct: 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 292 AFLYKGRIIAQDSP 305
           A + +G+++   SP
Sbjct: 213 AVMNRGQLLQIGSP 226

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           K  EF VLLG S  GKTT L+ I GL+  ++G I+   G     Y       +  + Q  
Sbjct: 36  KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF--GDRDVTYLPPKDRNISMVFQSY 93
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
           A++  +T+ E + F   I    +     ++R  + +L++   L R    LSGGQ++R++ 
Sbjct: 94  AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV 153
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR--TVIMTTQYIEEANDASEV 291
             AI+ +P ++++DEP   +D  +R  M   ++    K +  T+ +T   +E       +
Sbjct: 154 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI 213
Query: 292 AFLYKGRIIAQDSP 305
           A + +G+++   SP
Sbjct: 214 AVMNRGQLLQIGSP 227

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E+FV+LG + AGKT  L+ I G      G I + G     +  +     + ++ Q  ++F
Sbjct: 27  EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK--HDIAFVYQNYSLF 84
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI 237
             + +K+ L F   +  + +   +    +   +  L  L+R    LSGG+++R++   A+
Sbjct: 85  PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL--LDRNPLTLSGGEQQRVALARAL 142
Query: 238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGR-TVIMTTQYIEEAND-ASEVAFLY 295
           +  P++++LDEP   +DP  ++   ++L V   K + TV+  T    EA   A  +A + 
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM 202
Query: 296 KGRIIAQDSPD 306
            G++I    P+
Sbjct: 203 DGKLIQVGKPE 213

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E  ++ G + +GK+TLL+ + GL   + G++ +  G     Y       + +   E   F
Sbjct: 36  ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV-LYDGERKKGYEIRRNIGIAFQYPEDQFF 94
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-LSGGQKRRLSFTIA 236
            E    E        Y   + + L +       L   + +  V + LSGG+KRR++    
Sbjct: 95  AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 154
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLY 295
           I+H+P ++ILDEP VG+D   +  +  +++ +   G+TVI+ +  IE   N    V  L 
Sbjct: 155 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 214
Query: 296 KGRIIAQDSPDGFKSKYS 313
           KG+ +   +   F  KY 
Sbjct: 215 KGKKVFDGTRMEFLEKYD 232

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           K  EF  LLG S +GK+TLL  I G+   + G+I+        +  K     VG + Q  
Sbjct: 27  KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNW 84
Query: 175 AMFGELTIKETLNF-FGMIYGMDESI--WLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL 231
           A++  +T+ + + F   +     E I   + ++ K  H+ KL  L R    LSGGQ++R+
Sbjct: 85  ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL--LNRYPWQLSGGQQQRV 142
Query: 232 SFTIAILHKPQLIILDEPCVGVDPLVR-------KRMWDLLQVFVGKGRTVIMTTQYIEE 284
           +   A++ +P++++LDEP   +D L+R       KR+   L +      TV +T    E 
Sbjct: 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-----TTVYVTHDQAEA 197
Query: 285 ANDASEVAFLYKGRIIAQDSPDG--FKSKY 312
              A  +A + +G I+   +PD   +K KY
Sbjct: 198 LAMADRIAVIREGEILQVGTPDEVYYKPKY 227

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E  ++ G + +GK+TLL+ + GL   + G++ +  G     Y       + +   E   F
Sbjct: 34  ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV-LYDGERKKGYEIRRNIGIAFQYPEDQFF 92
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY-LSGGQKRRLSFTIA 236
            E    E        Y   + + L +       L   + +  V + LSGG+KRR++    
Sbjct: 93  AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152
Query: 237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA-NDASEVAFLY 295
           I+H+P ++ILDEP VG+D   +  +  +++ +   G+TVI+ +  IE   N    V  L 
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 212
Query: 296 KGRIIAQDSPDGFKSKYS 313
           KG+ +   +   F  KY 
Sbjct: 213 KGKKVFDGTRMEFLEKYD 230

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 29/193 (15%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
           G S  GK+T+   +      + GEI + G    +I  +   S++G++ Q+ A+    TI+
Sbjct: 35  GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIR 93
Query: 184 ETLNFFGMIYGM-----DESIW--LFQMRKYSHVLKLPNL------ERPVKYLSGGQKRR 230
           E L      YG+     DE +W  L      S V  +P+       ER VK +SGGQ++R
Sbjct: 94  ENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQRQR 147
Query: 231 LSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
           L+   A L  P++++LDE    +D     +V+K +  L+     KGRT ++    +    
Sbjct: 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-----KGRTTLVIAHRLSTIV 202
Query: 287 DASEVAFLYKGRI 299
           DA ++ F+ KG+I
Sbjct: 203 DADKIYFIEKGQI 215

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           +   L+G S AGK+T+L+ +    +IS G I + G   + +   +  S +G +PQ+  +F
Sbjct: 81  QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRK-YSHVLKLPN------LERPVKYLSGGQKRR 230
            + TI + + +  +  G DE     Q    +  ++  P        ER +K LSGG+K+R
Sbjct: 141 ND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQR 198
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
           ++    IL  P +I+LDE    +D    + +   L   V   RT I+    +    +A +
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLSTVVNADQ 257
Query: 291 VAFLYKGRIIAQDSPDGFKSK 311
           +  +  G I+ +   +   S+
Sbjct: 258 ILVIKDGCIVERGRHEALLSR 278

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW---VLGGHPASIYHKTAGSKVGYMP 171
           K  EF  LLG S  GKTT L  + G+   + GEI+   VL       Y +     VG + 
Sbjct: 27  KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE-----VGMVF 81
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRR 230
           Q  A++  +T+ E + F      + +     ++ + +  L + NL +R    LSGGQ++R
Sbjct: 82  QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQR 141
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIEEAND 287
           ++   A++ +P++++ DEP   +D  +R  M      LQ  +G   +V +T    E    
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT-SVYVTHDQAEAMTM 200
Query: 288 ASEVAFLYKGRIIAQDSPDGFKSKYSMPK 316
           AS +A   +G+++   +PD     Y  PK
Sbjct: 201 ASRIAVFNQGKLVQYGTPD---EVYDSPK 226

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGSKVGYM 170
           K  EF  ++G S +GK+T+L  I  L   ++GE+++       +      K    K+G++
Sbjct: 29  KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPV-----KYLS 224
            Q+  +   LT  E +    +I+    ++   + RK +   LK+  LE          LS
Sbjct: 89  FQQFNLIPLLTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS 147
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIE 283
           GGQ++R++   A+ + P +I+ D+P   +D    +++  LL+    + G+TV++ T  I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 284 EANDASEVAFLYKGRIIAQDSPDGFKSK 311
            A     + +L  G +  ++   GF  +
Sbjct: 208 VARFGERIIYLKDGEVEREEKLRGFDDR 235

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGSKVGYM 170
           K  EF  ++G S +GK+T+L  I  L   ++GE+++       +      K    K+G++
Sbjct: 29  KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPV-----KYLS 224
            Q+  +   LT  E +    +I+    ++   + RK +   LK+  LE          LS
Sbjct: 89  FQQFNLIPLLTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS 147
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIE 283
           GGQ++R++   A+ + P +I+ D+P   +D    +++  LL+    + G+TV++ T  I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 284 EANDASEVAFLYKGRIIAQDSPDGFKSK 311
            A     + +L  G +  ++   GF  +
Sbjct: 208 VARFGERIIYLKDGEVEREEKLRGFDDR 235

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           L+G + +GKTT++  ++   ++ +G+I V G     I   +  S +G + Q+  +F   T
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-T 444
Query: 182 IKETLNFFGMIYGMDESI-WLFQMRKYSHVLK-LPNLERPV-----KYLSGGQKRRLSFT 234
           +KE L + G     DE I    ++    H +K LP     V     + LS GQ++ L+ T
Sbjct: 445 VKENLKY-GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503
Query: 235 IAILHKPQLIILDEPCVGVDPLVRKR----MWDLLQVFVGKGRTVIMTTQYIEEANDASE 290
            A L  P+++ILDE    VD    K     MW L++     G+T I+    +    +A  
Sbjct: 504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-----GKTSIIIAHRLNTIKNADL 558
Query: 291 VAFLYKGRIIAQDSPDGFKSK 311
           +  L  G I+     D    K
Sbjct: 559 IIVLRDGEIVEMGKHDELIQK 579

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           ++ E    +G S  GK+TL+  I    +++ G+I + G +       +  +++G + Q+ 
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL------ERPVKYLSGG 226
            +F + T+KE +   G     DE +        +H  ++ LP        ER VK LSGG
Sbjct: 425 ILFSD-TVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGG 481
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
           QK+RLS     L+ P ++ILDE    +D      + + L V + K RT ++    +    
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLSTIT 540
Query: 287 DASEVAFLYKGRII 300
            A ++  +  G I+
Sbjct: 541 HADKIVVIENGHIV 554

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 26/224 (11%)
Query: 120  FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGE 179
              L+G S  GK+T++  +    +   GEI++ G    ++  +   S++  + QE  +F +
Sbjct: 1108 LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-D 1166
Query: 180  LTIKETLNFFGMIYGMD-ESIWLFQMRKYSHVLKLPNL--ERPVKY----------LSGG 226
             +I E +     IYG+D  S+ + Q+ + + +  + N   E P  +          LSGG
Sbjct: 1167 CSIAENI-----IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221
Query: 227  QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
            QK+R++   A++  P++++LDE    +D    K + + L     +GRT I+    +    
Sbjct: 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHRLNTVM 1280
Query: 287  DASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGT 330
            +A  +A +  G II + +     S+         +YK+T    T
Sbjct: 1281 NADCIAVVSNGTIIEKGTHTQLMSE------KGAYYKLTQKQMT 1318

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQEL 174
           E F +LG S AGKTT ++ I GL   S GE++    L      +       K+G + Q  
Sbjct: 32  ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
           A++  LT  E + F      M +     ++ + + +L + + L    + LSGGQ++R++ 
Sbjct: 92  ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVAL 151
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND------ 287
             A++  P L++LDEP   +D     RM D  +  V + ++ +  T  +   +       
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI 207
Query: 288 ASEVAFLYKGRIIAQDSPD 306
           A  V  L KG+++    P+
Sbjct: 208 ADRVGVLVKGKLVQVGKPE 226

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 12/208 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI----YHKTAGSKVGYM 170
           K  EF  + G S +GK+T L  I  L   ++GE+++       +      K    K+G++
Sbjct: 29  KEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS-HVLKLPNLERPV-----KYLS 224
            Q+  +   LT  E +    +I+    +    + RK +   LK   LE          LS
Sbjct: 89  FQQFNLIPLLTALENVEL-PLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLS 147
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIE 283
           GGQ++R++   A+ + P +I+ DEP   +D    +++  LL+    + G+TV++ T  I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDIN 207
Query: 284 EANDASEVAFLYKGRIIAQDSPDGFKSK 311
            A     + +L  G +  ++   GF  +
Sbjct: 208 VARFGERIIYLKDGEVEREEKLRGFDDR 235

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---AGSKVGYMPQEL 174
           + + ++GAS AGK+TL++ +  L+  ++G + V G    ++       A  ++G + Q  
Sbjct: 32  QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91
Query: 175 AMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQ 227
            +    T+      FG +     +D +      R+ + +L L  L ++   Y   LSGGQ
Sbjct: 92  NLLSSRTV------FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 145
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN 286
           K+R++   A+   P++++ DE    +DP   + + +LL+    + G T+++ T  ++   
Sbjct: 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 205
Query: 287 DASE-VAFLYKGRIIAQDSPDGFKSKYSMPK 316
              + VA +  G +I QD+       +S PK
Sbjct: 206 RICDCVAVISNGELIEQDT---VSEVFSHPK 233

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-GSKVGYMPQELAMFGE 179
            L+G + +GK+T+ K +    + ++G+I + GG   + Y++ +  S +G +PQ+  +F E
Sbjct: 50  ALVGHTGSGKSTIAKLLYRFYD-AEGDIKI-GGKNVNKYNRNSIRSIIGIVPQDTILFNE 107
Query: 180 LTIKETLNFFGMIYGMDESI--WLFQMRKYSHVLKLPNLERPV-----KYLSGGQKRRLS 232
            TIK  +  +G +   DE +       + Y  +  LP     +       LSGG+++R++
Sbjct: 108 -TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIA 165
Query: 233 FTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDA 288
               +L  P+++I DE    +D     L +K + DL      K RT+I+    +   + A
Sbjct: 166 IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-----KNRTLIIIAHRLSTISSA 220
Query: 289 SEVAFLYKGRIIAQ 302
             +  L KG+I+ +
Sbjct: 221 ESIILLNKGKIVEK 234

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW-----VLGGHPASIYHKTAGSKVGYMPQELA 175
           +++G + +GK+TL+  I G     +G ++     +    PA +YH     +    PQ L 
Sbjct: 37  LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLK 95
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMR-------------KYSHVLKLPNL-ERPVK 221
              E+T+ E L    +  G      LF  +             K    LKL +L +R   
Sbjct: 96  ---EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LSGGQ + +    A++  P++I++DEP  GV P +   +++ +     KG T ++    
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 282 IEEA-NDASEVAFLYKGRIIAQD-SPDGFKSKYSMPKLSDVF 321
           ++   N    +  ++ G+IIA+    +  K+  S PK+ +++
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 254

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW-----VLGGHPASIYHKTAGSKVGYMPQELA 175
           +++G + +GK+TL+  I G     +G ++     +    PA +YH     +    PQ L 
Sbjct: 37  LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLK 95
Query: 176 MFGELTIKETL-------------NFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVK 221
              E+T+ E L             + F   +   E   + +  K    LKL +L +R   
Sbjct: 96  ---EMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LSGGQ + +    A++  P++I++DEP  GV P +   +++ +     KG T ++    
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 282 IEEA-NDASEVAFLYKGRIIAQD-SPDGFKSKYSMPKLSDVF 321
           ++   N    +  ++ G+IIA+    +  K+  S PK+ +++
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 254

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 21/227 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQEL 174
           E F +LG S AGKTT ++ I GL   S GE++    L      +       K+G + Q  
Sbjct: 32  ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF 233
           A++  LT  E + F      M +     ++ + + +L + + L    + LSG Q++R++ 
Sbjct: 92  ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151
Query: 234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND------ 287
             A++  P L++LDEP   +D     RM D  +  V + ++ +  T  +   +       
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDA----RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI 207
Query: 288 ASEVAFLYKGRIIA-------QDSPDGFKSKYSMPKLSDVFYKITND 327
           A  V  L KG+++         D+P   +    + +++++  K+TN+
Sbjct: 208 ADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNE 254

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 24/205 (11%)
Query: 120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--KTAGSKVGYMPQELA-- 175
           ++L G + AGKTTLL  +   +  + G + + G  P  + +  +T    +G++   L   
Sbjct: 50  WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 176 -MFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSH-VLKL----PNLERPVKYLS 224
              GE  I        +I G  +SI ++Q     +R  +H +LKL       ++ + YLS
Sbjct: 110 FQEGERVIDV------VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLS 163
Query: 225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV--IMTTQYI 282
            G+K+R+    A+  +PQ++ILDEP  G+D + R+ +  +L        T+  I  T +I
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFI 223
Query: 283 EEAN-DASEVAFLYKGRIIAQDSPD 306
           EE   + S++  L  G+ I Q + +
Sbjct: 224 EEITANFSKILLLKDGQSIQQGAVE 248

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---AGSKVGYMPQEL 174
           + + ++GAS AGK+TL++ +  L+  ++G + V G    ++       A  ++G + Q  
Sbjct: 55  QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF 114
Query: 175 AMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQ 227
            +    T+      FG +     +D +      R+ + +L L  L ++   Y   LSGGQ
Sbjct: 115 NLLSSRTV------FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN 286
           K+R++   A+   P++++ D+    +DP   + + +LL+    + G T+++ T  ++   
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 228
Query: 287 DASE-VAFLYKGRIIAQDSPDGFKSKYSMPK 316
              + VA +  G +I QD+       +S PK
Sbjct: 229 RICDCVAVISNGELIEQDT---VSEVFSHPK 256

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT---AGSKVGYMPQEL 174
           + + ++GAS AGK+TL++ +  L+  ++G + V G    ++       A  ++G + Q  
Sbjct: 55  QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHF 114
Query: 175 AMFGELTIKETLNFFGMI---YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY---LSGGQ 227
            +    T+      FG +     +D +      R+ + +L L  L ++   Y   LSGGQ
Sbjct: 115 NLLSSRTV------FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN 286
           K+R++   A+   P++++ D+    +DP   + + +LL+    + G T+++ T   +   
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVK 228
Query: 287 DASE-VAFLYKGRIIAQDSPDGFKSKYSMPK 316
              + VA +  G +I QD+       +S PK
Sbjct: 229 RICDCVAVISNGELIEQDT---VSEVFSHPK 256

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 29/196 (14%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           L+G S +GK+T+L  ++ L + + G I + G     +      SK+G + QE  +F   +
Sbjct: 406 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCS 464
Query: 182 IKETLNFFGMIYGMDE--SIWLFQMRKYSHVLKLPNLER--PVKY----------LSGGQ 227
           I E +      YG D+  S+   ++++ + V       R  P  +          LSGGQ
Sbjct: 465 IAENI-----AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 519
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
           K+R++   A+L  P++++LDE    +D     LV++ +  L+      GRTV++   ++ 
Sbjct: 520 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-----GRTVLVIAHHLS 574
Query: 284 EANDASEVAFLYKGRI 299
              +A+ VA L +G+I
Sbjct: 575 TIKNANMVAVLDQGKI 590

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 48/218 (22%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           KR E   +LG +  GK+TL +   G+   S G I                      P + 
Sbjct: 32  KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF-----------------DNKPIDY 74
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHV------LKLPNLE----------- 217
           +  G + ++E++   G+++  D    LF    Y  V      +KLP  E           
Sbjct: 75  SRKGIMKLRESI---GIVF-QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR 130
Query: 218 --------RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-VRKRMWDLLQVF 268
                   +P   LS GQK+R++    ++ +P+++ILDEP  G+DP+ V + M  L+++ 
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 269 VGKGRTVIMTTQYIEEANDASEVAFLYK-GRIIAQDSP 305
              G T+I+ T  I+      +  F+ K GR+I Q +P
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIW-----VLGGHPASIYHKTAGSKVGYMPQELA 175
           +++G + +GK+TL+  I G     +G ++     +    PA +YH     +    PQ L 
Sbjct: 37  LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLK 95
Query: 176 MFGELTIKETL-------------NFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVK 221
              E+T+ E L             + F   +   E   + +  K    LKL +L +R   
Sbjct: 96  ---EMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LSGGQ + +    A++  P++I++D+P  GV P +   +++ +     KG T ++    
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 282 IEEA-NDASEVAFLYKGRIIAQD-SPDGFKSKYSMPKLSDVF 321
           ++   N    +  ++ G+IIA+    +  K+  S PK+ +++
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 254

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYHKTAGSKVGYMPQELA 175
           E  V++G S +GK+T L+ +  L++  +GEI + G +             +VG + Q   
Sbjct: 30  EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 89
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---ERPVKY---LSGGQKR 229
           +F  +T+   +     +  M    W  +  +   +  L  +   ++   Y   LSGGQ +
Sbjct: 90  LFPHMTVLNNIT----LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQ 145
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289
           R++   A+  +P++++ DEP   +DP +   +  +++    +G T+++ T  +  A +  
Sbjct: 146 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 205
Query: 290 E-VAFLYKGRIIAQDSPD 306
           + V F+  G II +  P+
Sbjct: 206 DRVLFMDGGYIIEEGKPE 223

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           L+G S +GK+T+L  ++ L + + G I + G     +      SK+G + QE  +F   +
Sbjct: 375 LVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCS 433
Query: 182 IKETLNFFGMIYGMDE--SIWLFQMRKYSHVLKLPNLER--PVKY----------LSGGQ 227
           I E +      YG D+  S+   ++++ + V       R  P  +          LSGGQ
Sbjct: 434 IAENIA-----YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKGRTVIMTTQYIE 283
           K+R++   A+L  P++++LDE    +D     LV++ +  L+      GRTV++    + 
Sbjct: 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-----GRTVLVIAHRLS 543
Query: 284 EANDASEVAFLYKGRI 299
              +A+ VA L +G+I
Sbjct: 544 TIKNANMVAVLDQGKI 559

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH--PASIYHKTAGSKVGYMPQELA 175
           E  V++G S +GK+T L+ +  L++  +GEI + G +             +VG + Q   
Sbjct: 51  EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110
Query: 176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---ERPVKY---LSGGQKR 229
           +F  +T+   +     +  M    W  +  +   +  L  +   ++   Y   LSGGQ +
Sbjct: 111 LFPHMTVLNNIT----LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQ 166
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289
           R++   A+  +P++++ DEP   +DP +   +  +++    +G T+++ T  +  A +  
Sbjct: 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 226
Query: 290 E-VAFLYKGRIIAQDSPD 306
           + V F+  G II +  P+
Sbjct: 227 DRVLFMDGGYIIEEGKPE 244

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           K  +   L+G S  GK+T ++ +  L +   G + + G    +I  +     +G + QE 
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 175 AMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLPNL------ERPVKYLSGGQ 227
            +F   TI E + +      MDE    + +   Y  ++KLP+       ER  + LSGGQ
Sbjct: 474 VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287
           K+R++   A++  P++++LDE    +D      +   L     +GRT I+    +    +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRN 590
Query: 288 ASEVAFLYKGRIIAQDSPD 306
           A  +A    G I+ Q + D
Sbjct: 591 ADVIAGFDGGVIVEQGNHD 609

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           K  +   L+G S  GK+T ++ +  L +   G + + G    +I  +     +G + QE 
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 175 AMFGELTIKETLNFFGMIYGMDE-SIWLFQMRKYSHVLKLPNL------ERPVKYLSGGQ 227
            +F   TI E + +      MDE    + +   Y  ++KLP+       ER  + LSGGQ
Sbjct: 474 VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQ 531
Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND 287
           K+R++   A++  P++++LDE    +D      +   L     +GRT I+    +    +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRN 590
Query: 288 ASEVAFLYKGRIIAQDSPD 306
           A  +A    G I+ Q + D
Sbjct: 591 ADVIAGFDGGVIVEQGNHD 609

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 128 AGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT-IKETL 186
           +GK+T L+ I  L+  S+G I V G +   +  K    KV    Q   +   LT + +  
Sbjct: 43  SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF 102
Query: 187 NFFGMIY----GMDESIWLFQMRKYS-------HVLKLPNLER-----PVKYLSGGQKRR 230
           N +  +      M+  I +  + K+        ++ K+   ER     PV +LSGGQ++R
Sbjct: 103 NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV-HLSGGQQQR 161
Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-AS 289
           +S   A+  +P +++ DEP   +DP +   +  ++Q    +G+T+++ T  +  A   +S
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221
Query: 290 EVAFLYKGRIIAQDSPDGFKSKYSMPKLS 318
            V FL++G+I  +  P+        P+L 
Sbjct: 222 HVIFLHQGKIEEEGDPEQVFGNPQSPRLQ 250

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 62  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQNSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE  N  G+ Y  DE        +Y  V+K   LE  +              
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 217 SKMEHLKKADKILILHEG 234

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 62  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQNSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE  N  G+ Y  DE        +Y  V+K   LE  +              
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 217 SKMEHLKKADKILILHEG 234

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGE 179
            L+G + +GK+T+   +  L   + G++ +L G P   Y H    ++V  + QE  +FG 
Sbjct: 49  ALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKRRLS 232
            + +E + +        E I    M   +H  +   P      +      LSGGQ++ ++
Sbjct: 108 -SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA 166
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEV 291
              A++ KP+L+ILD     +D   + R+  LL +      RTV++ TQ +  A  A  +
Sbjct: 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHI 226
Query: 292 AFLYKGRIIAQDS 304
            FL +G +  Q +
Sbjct: 227 LFLKEGSVCEQGT 239

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 32  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 83
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +  FG+ Y  DE        +Y  V+K   LE  +              
Sbjct: 84  ------TIKENI-IFGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 188 SKMEHLKKADKILILHEG 205

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 44  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 95
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +  FG+ Y  DE        +Y  V+K   LE  +              
Sbjct: 96  ------TIKENI-IFGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 200 SKMEHLKKADKILILHEG 217

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGE 179
            L+G + +GK+T+   +  L   + G++ +L G P   Y H    ++V  + QE  +FG 
Sbjct: 49  ALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKRRLS 232
            + +E + +        E I    M   +H  +   P      +      LSGGQ++ ++
Sbjct: 108 -SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA 166
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEV 291
              A++ KP+L+ILD+    +D   + R+  LL +      RTV++ T  +  A  A  +
Sbjct: 167 LARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHI 226
Query: 292 AFLYKGRIIAQDS 304
            FL +G +  Q +
Sbjct: 227 LFLKEGSVCEQGT 239

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 32  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 83
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE  N  G+ Y  DE        +Y  V+K   LE  +              
Sbjct: 84  ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 187 SKMEHLKKADKILILHEG 204

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAM 176
           E   L+G + +GK+T+   +  L   + G++ +L G P   Y H+    +V  + QE  +
Sbjct: 44  EVTALVGPNGSGKSTVAALLQNLYQPTGGQL-LLDGKPLPQYEHRYLHRQVAAVGQEPQV 102
Query: 177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKR 229
           FG  +++E + +        E I    ++  +H  +  LP      ++     LSGGQ++
Sbjct: 103 FGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 161
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDA 288
            ++   A++ KP ++ILD+    +D   + ++  LL     +  R+V++ TQ++     A
Sbjct: 162 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA 221
Query: 289 SEVAFLYKGRI 299
             + FL  G I
Sbjct: 222 DHILFLEGGAI 232

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 62  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +     I G+      +   +Y  V+K   LE  +              
Sbjct: 114 ------TIKENI-----IAGVS-----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 218 SKMEHLKKADKILILHEG 235

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 9/181 (4%)
Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
           G +  GKTTLLK I       +GEI +  G P +   K  G K+ ++P+E+ +  +++++
Sbjct: 42  GPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPIT---KVKG-KIFFLPEEIIVPRKISVE 96
Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL 243
           + L     +YG+   +   ++      +++ +L++ +  LS G  RR+     +L   ++
Sbjct: 97  DYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 154
Query: 244 IILDEPCVGVDPLVR-KRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
            +LD+P V +D   + K +  +L++   KG  +I + + +    D +E    Y  +I  +
Sbjct: 155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC-DVNENLHKYSTKIDKK 213
Query: 303 D 303
           D
Sbjct: 214 D 214

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT----AGSKVGYM 170
           K+ EF  ++GAS +GK+TLL  +  L   ++G++++ G        K        K+G++
Sbjct: 28  KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFV 87
Query: 171 PQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKR 229
            Q   +  ELT  E +    +  G  +     +       L L + L R    LSGG+++
Sbjct: 88  FQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQ 147
Query: 230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS 289
           R++   A+ ++P L+  DEP   +D    KR+ D+       G +++M T   E A    
Sbjct: 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTH 207
Query: 290 EVAFLYKGRIIAQ 302
               +  G+++ +
Sbjct: 208 RTLEMKDGKVVGE 220

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 62  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +  FG+ Y  DE        +Y  V+K   LE  +              
Sbjct: 114 ------TIKENI-IFGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LS GQ+ ++S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 218 SKMEHLKKADKILILHEG 235

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 15/200 (7%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E   ++G + AGK+TLL+ + G  + S GE  +LG +  S   K        M Q   + 
Sbjct: 38  EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97
Query: 178 GELTIKETLNFFGMIY-GMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR--LSFT 234
              ++ E +      Y G  +   L Q+   +  L L   +R  + LSGG+++R  L+  
Sbjct: 98  FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA--QRDYRVLSGGEQQRVQLARV 155
Query: 235 IAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS- 289
           +A L +PQ     + LDEP   +D   ++    LL+    +    +     + + N A+ 
Sbjct: 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV--LHDLNLAAL 213
Query: 290 ---EVAFLYKGRIIAQDSPD 306
               +  L +G+++A  +P+
Sbjct: 214 YADRIMLLAQGKLVACGTPE 233

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 11/193 (5%)
Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGE 179
            L+G + +GK+T+   +  L   + G++ +L G P   Y H    ++V  + QE  +FG 
Sbjct: 49  ALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 180 LTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN-----LERPVKYLSGGQKRRLS 232
            + +E + +        E I    M   +H  +   P      +      L+ GQ++ ++
Sbjct: 108 -SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVA 166
Query: 233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEV 291
              A++ KP+L+ILD     +D   + R+  LL +      RTV++ TQ +  A  A  +
Sbjct: 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHI 226
Query: 292 AFLYKGRIIAQDS 304
            FL +G +  Q +
Sbjct: 227 LFLKEGSVCEQGT 239

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I DE    +D     ++ + M  +      KGRTVI+ 
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 196
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 197 AHRLSTVKNADRIIVMEKGKIVEQ 220

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I DE    +D     ++ + M  +      KGRTVI+ 
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 196
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 197 AHRLSTVKNADRIIVMEKGKIVEQ 220

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I DE    +D     ++ + M  +      KGRTVI+ 
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 194
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 195 AHRLSTVKNADRIIVMEKGKIVEQ 218

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I DE    +D     ++ + M  +      KGRTVI+ 
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 200
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 201 AHRLSTVKNADRIIVMEKGKIVEQ 224

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF 177
           E  ++LG + +GKTTLL+AI GL   S G I++ G     I +    S    +P+   + 
Sbjct: 31  EKVIILGPNGSGKTTLLRAISGLLPYS-GNIFINGMEVRKIRNYIRYST--NLPEAYEI- 86
Query: 178 GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTI 235
             +T+ + +  +  + G+D  ++L  ++     LKL    L R +  LS GQ   +  ++
Sbjct: 87  -GVTVNDIVYLYEELKGLDRDLFLEMLK----ALKLGEEILRRKLYKLSAGQSVLVRTSL 141
Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN 286
           A+  +P+++ LDEP   VD   R  +   ++ +   G+  I+ T  ++  N
Sbjct: 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELDMLN 189

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I DE    +D     ++ + M  +      KGRTVI+ 
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 194
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 195 AARLSTVKNADRIIVMEKGKIVEQ 218

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           +R +   + G++ AGKT+LL  I+G    S+G+I     H   I   +  S +  MP   
Sbjct: 62  ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGRISFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE  N  G+ Y  DE        +Y  V+K   LE  +              
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LS GQ+ ++S   A+     L +LD P   +D L  K +++     +   +T I+ T
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 217 SKMEHLKKADKILILHEG 234

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I DE    +D     ++ + M  +      KGRTVI+ 
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-----KGRTVIII 200
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 201 AARLSTVKNADRIIVMEKGKIVEQ 224

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           ++ E   + G++ +GKT+LL  I+G    S+G I     H   +   +  S +  MP   
Sbjct: 62  EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +  FG+ Y  DE        +Y  V+K   L++ +              
Sbjct: 114 ------TIKENI-IFGVSY--DE-------YRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D    +++++     +   +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
           ++ Y  + ++   ++T+ E L FF  I  +  ++ +       +V     L +P   LSG
Sbjct: 753 EITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYV----KLGQPATTLSG 808
Query: 226 GQKRRLSFTIAILHKPQ---LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI 282
           G+ +R+     +  +     L ILDEP VG+     +++ ++L   V +G TVI+    +
Sbjct: 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868
Query: 283 EEANDASEVAFL------YKGRIIAQDSPD 306
           +   +A  +  L        G I+A  +P+
Sbjct: 869 DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           ++ E   + G++ +GKT+LL  I+G    S+G I     H   +   +  S +  MP   
Sbjct: 62  EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +  FG+ Y  DE        +Y  V+K   L++ +              
Sbjct: 114 ------TIKENI-IFGVSY--DE-------YRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D    +++++     +   +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235

>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
           +V Y  + +A   ++T+++ L+FF  I  +   +       Y   L    L +P   LSG
Sbjct: 793 EVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETL----YDVGLGYMKLGQPATTLSG 848
Query: 226 GQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
           G+ +R+    A LH+      L ILDEP  G+      R+ D+L   V  G TV++    
Sbjct: 849 GEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 282 IEEANDASEVAFL------YKGRIIAQDSPD 306
           ++    A  +  L        G+I+A  +P+
Sbjct: 908 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938

>pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
           +V Y  + +A   ++T+++ L+FF  I  +   +       Y   L    L +P   LSG
Sbjct: 491 EVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETL----YDVGLGYMKLGQPATTLSG 546
Query: 226 GQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
           G+ +R+    A LH+      L ILDEP  G+      R+ D+L   V  G TV++    
Sbjct: 547 GEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Query: 282 IEEANDASEVAFL------YKGRIIAQDSPD 306
           ++    A  +  L        G+I+A  +P+
Sbjct: 606 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 636

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMT 278
           LSGGQ++R++   A+++ P+++I D+    +D     ++ + M  +      KGRTVI+ 
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC-----KGRTVIII 200
Query: 279 TQYIEEANDASEVAFLYKGRIIAQ 302
              +    +A  +  + KG+I+ Q
Sbjct: 201 AHRLSTVKNADRIIVMEKGKIVEQ 224

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELT 181
           LLG + +GK+TLL A + L N ++GEI + G    SI  +      G +PQ++ +F   T
Sbjct: 52  LLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG-T 109
Query: 182 IKETLNFFGMIYGMDESIWLF--QMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFT 234
            ++ L+        D+ IW    ++   S + + P      L      LS G K+ +   
Sbjct: 110 FRKNLDPNAA--HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167
Query: 235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEANDASEVAF 293
            ++L K ++++LDEP   +DP+  + +   L Q F     TVI+    IE   +  +   
Sbjct: 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC--TVILCEARIEAMLECDQFLV 225
Query: 294 LYKGRIIAQDS 304
           + + ++   DS
Sbjct: 226 IEENKVRQYDS 236

>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
           +V Y  + +A   + T+++ L+FF  I  +   +       Y   L    L +P   LSG
Sbjct: 793 EVTYKGKNIAEVLDXTVEDALDFFASIPKIKRKLETL----YDVGLGYXKLGQPATTLSG 848
Query: 226 GQKRRLSFTIAILHKPQ----LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
           G+ +R+    A LH+      L ILDEP  G+      R+ D+L   V  G TV++    
Sbjct: 849 GEAQRVKLA-AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 282 IEEANDASEVAFL------YKGRIIAQDSPD 306
           ++    A  +  L        G+I+A  +P+
Sbjct: 908 LDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 40/198 (20%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           ++ E   + G++ +GKT+LL  I+G    S+G I     H   +   +  S +  MP   
Sbjct: 62  EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE  N  G+ Y  DE        +Y  V+K   L++ +              
Sbjct: 114 ------TIKE--NIIGVSY--DE-------YRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D    +++++     +   +T I+ T
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 217 SKMEHLRKADKILILHQG 234

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMP 171
            + +   +LG +  GK+TLL  ++G+    QG+I V   +G  P     +   S   Y  
Sbjct: 29  NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP-----QFFSSPFAYSV 83
Query: 172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL 231
            ++ + G  T    +N F      D  + + Q   Y ++  L   +R    LSGGQ++ +
Sbjct: 84  LDIVLMGRST---HINTFAKPKSHDYQVAM-QALDYLNLTHLA--KREFTSLSGGQRQLI 137
Query: 232 SFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIMTTQ 280
               AI  + +LI+LDEP   +D     +V   + DL Q    +  TV+ TT 
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ---SQNMTVVFTTH 187

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQE 173
           K+ E   ++G +  GKTT +K + G++  ++G+I W L               V Y PQ 
Sbjct: 310 KKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL--------------TVAYKPQY 355
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
           +    E T+ E L+       ++ + +  ++ K   ++ L   +R V  LSGG+ +R++ 
Sbjct: 356 IKADYEGTVYELLSKIDA-SKLNSNFYKTELLKPLGIIDL--YDREVNELSGGELQRVAI 412
Query: 234 TIAILHKPQLIILDEPCVGVD 254
              +L    + +LDEP   +D
Sbjct: 413 AATLLRDADIYLLDEPSAYLD 433

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 122 LLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYMPQELAMFGEL 180
           L+G S +GK+T+   I    +I +GEI ++ GH    Y   +  ++V  + Q + +F + 
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGEI-LMDGHDLREYTLASLRNQVALVSQNVHLFND- 431
Query: 181 TIKETLNFFG--------------MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG 226
           T+   + +                M Y MD       + K  + L     E  V  LSGG
Sbjct: 432 TVANNIAYARTEQYSREQIEEAARMAYAMDF------INKMDNGLDTVIGENGV-LLSGG 484
Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM---WDLLQVFVGKGRTVIMTTQYIE 283
           Q++R++   A+L    ++ILDE    +D    + +    D LQ    K RT ++    + 
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLS 540
Query: 284 EANDASEVAFLYKGRII 300
               A E+  +  G I+
Sbjct: 541 TIEKADEIVVVEDGVIV 557

>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 27/183 (14%)
Query: 145 QGEIWVLGG--------HPASIYHKTAGS----KVGYMPQELAMFGELTIKETLNFFGMI 192
           QGE WV+           P  + H T  +    +V Y  + +A    LT+ E  +FF   
Sbjct: 645 QGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA-- 702
Query: 193 YGMDESIWLFQMRKYSHV-LKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ---LIILDE 248
              DES     +     V L    L +P   LSGG+ +R+     +    +   + +LDE
Sbjct: 703 ---DESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE 759
Query: 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMT---TQYIEEAN---DASEVAFLYKGRIIAQ 302
           P  G+ P   +R+   L   V  G TVI      Q +  ++   D    A    GR++AQ
Sbjct: 760 PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819
Query: 303 DSP 305
            +P
Sbjct: 820 GTP 822

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           ++ E   + G++ +GKT+LL  I+G    S+G I     H   +   +  S +  MP   
Sbjct: 62  EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +     I G+      +   +Y  V+K   L++ +              
Sbjct: 114 ------TIKENI-----ISGVS-----YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D    +++++     +   +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL 174
           ++ E   + G++ +GKT+LL  I+G    S+G I     H   +   +  S +  MP   
Sbjct: 62  EKGEMLAITGSTGSGKTSLLMLILGELEASEGII----KHSGRVSFCSQFSWI--MPG-- 113
Query: 175 AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVK------------- 221
                 TIKE +     I G+      +   +Y  V+K   L++ +              
Sbjct: 114 ------TIKENI-----IRGVS-----YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 222 --YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
              LSGGQ+ R+S   A+     L +LD P   +D    +++++     +   +T I+ T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 280 QYIEEANDASEVAFLYKG 297
             +E    A ++  L++G
Sbjct: 218 SKMEHLRKADKILILHQG 235

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQE 173
           ++ E   ++G +  GKTT +K + G++  ++G++ W L               V Y PQ 
Sbjct: 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL--------------TVAYKPQY 425
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
           +    E T+ E L+       ++ + +  ++ K   ++ L   +R V+ LSGG+ +R++ 
Sbjct: 426 IKAEYEGTVYELLSKIDS-SKLNSNFYKTELLKPLGIIDL--YDRNVEDLSGGELQRVAI 482
Query: 234 TIAILHKPQLIILDEPCVGVD 254
              +L    + +LDEP   +D
Sbjct: 483 AATLLRDADIYLLDEPSAYLD 503

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQE 173
           ++ E   ++G +  GKTT +K + G++  ++G++ W L               V Y PQ 
Sbjct: 366 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL--------------TVAYKPQY 411
Query: 174 LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF 233
           +    E T+ E L+       ++ + +  ++ K   ++ L   +R V+ LSGG+ +R++ 
Sbjct: 412 IKAEYEGTVYELLSKIDS-SKLNSNFYKTELLKPLGIIDL--YDRNVEDLSGGELQRVAI 468
Query: 234 TIAILHKPQLIILDEPCVGVD 254
              +L    + +LDEP   +D
Sbjct: 469 AATLLRDADIYLLDEPSAYLD 489

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	457
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-60
1sgw_A	214	Putative ABC transporter; structural genomics, P p	5e-47
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	4e-38
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-29
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	9e-29
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-25
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-24
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-23
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-16
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-17
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	4e-21
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	3e-19
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-18
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-14
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	7e-18
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-13
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	8e-17
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	4e-15
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-14
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-14
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-14
1b0u_A	262	Histidine permease; ABC transporter, transport pro	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-06
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	4e-13
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-12
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-12
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-12
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-12
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-10
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-12
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-12
1g6h_A	257	High-affinity branched-chain amino acid transport	7e-12
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	8e-12
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-11
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	8e-11
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	8e-11
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-10
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	7e-10
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-09
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	3e-09
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	4e-09
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	5e-09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	2e-08
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	4e-08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-07
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	5e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
2zjr_S	237	50S ribosomal protein L25; ribosome, large ribosom	7e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  196 bits (500), Expect = 4e-60
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 9/231 (3%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              +L   S  ++  E F L+G + AGKTT L+ I  L   S G + V G          
Sbjct: 27  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG-KNVVEEPHE 85

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE----R 218
               + Y+P+E   +  +   E L F    Y    S             ++  L      
Sbjct: 86  VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKIKD 142

Query: 219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
            V   S G  R+L    A++  P+L ILDEP  G+D L  + +  +L+    +G T++++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202

Query: 279 TQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDD 328
           +  + E       +A ++ G I+   + +  K +Y    + +VF ++    
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCS 253

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  160 bits (408), Expect = 5e-47
 Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 17/202 (8%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
             VL   ++ +++       G +  GKTTLLK I       +GEI   G     I     
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG---VPI--TKV 76

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE---RPV 220
             K+ ++P+E+ +  ++++++ L     +YG+  +       +    L+   +    + +
Sbjct: 77  KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-----KNEIMDALESVEVLDLKKKL 131

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTT 279
             LS G  RR+     +L   ++ +LD+P V +D   + ++   +   +  KG  +I + 
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191

Query: 280 QYIEEANDASEVAFLYKGRIIA 301
           + +   +       L+K     
Sbjct: 192 EELSYCD---VNENLHKYSTKI 210

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  139 bits (352), Expect = 4e-38
 Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 17/231 (7%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH--K 161
             +L   S  + + + ++L G + AGKTTLL  +   +  + G + + G  P  + +  +
Sbjct: 34  KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93

Query: 162 TAGSKVGYMPQELAM--FGELTIKET-LN-FFGMIYGMDESIWLFQMRKYSHVLKLPNLE 217
           T    +G++   L         + +  ++  F  I G+ + I      +   +LKL  + 
Sbjct: 94  TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-GVYQDIDDEIRNEAHQLLKLVGMS 152

Query: 218 ----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV--GK 271
               + + YLS G+K+R+    A++ +PQ++ILDEP  G+D + R+ +  +L        
Sbjct: 153 AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYP 212

Query: 272 GRTVIMTTQYIEEANDASE-VAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
              +I  T +IEE       +  L  G+ I Q + +   +      +S  F
Sbjct: 213 TLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS---ENMSRFF 260

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  114 bits (287), Expect = 3e-29
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               L N SLV+   E  ++ G + +GK+TLL+ + GL   + G++    G         
Sbjct: 19  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY-DGERKKG--YE 75

Query: 163 AGSKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL---- 216
               +G   Q  E   F E  + + + F    +  D       +      ++   L    
Sbjct: 76  IRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDP----VPLVKKAMEFVGLDFDS 130

Query: 217 --ERPVKYLSGGQKRRLSFTIA-IL-HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKG 272
             +R   +LSGG+KRR++  IA ++ H+P ++ILDEP VG+D   +  +  +++ +   G
Sbjct: 131 FKDRVPFFLSGGEKRRVA--IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188

Query: 273 RTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
           +TVI+ +  IE   N    V  L KG+ +   +  
Sbjct: 189 KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRM 223

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  113 bits (284), Expect = 9e-29
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 17/207 (8%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
              L N +L V   E  ++LG + +GKTTLL+AI GL     G I++  G          
Sbjct: 18  RFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLLP-YSGNIFI-NGMEVRKIRNYI 74

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVK 221
                 +P+   +   +T+ + +  +  + G+D  +      +    LKL    L R + 
Sbjct: 75  R-YSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDL----FLEMLKALKLGEEILRRKLY 127

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
            LS GQ   +  ++A+  +P+++ LDEP   VD   R  +   ++ +   G+  I+ T  
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHE 184

Query: 282 IEEANDASE-VAFLYKGRIIAQ-DSPD 306
           ++  N   E  A+   G  +    S  
Sbjct: 185 LDMLNLYKEYKAYFLVGNRLQGPISVS 211

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  104 bits (261), Expect = 2e-25
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                L   ++ +KR E   +LG +  GK+TL +   G+   S G I      P     K
Sbjct: 19  DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF-DNKPIDYSRK 77

Query: 162 TAG---SKVGYMPQ--ELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPN 215
                   +G + Q  +  +F   ++ + ++F  +   + E     ++RK   + LK   
Sbjct: 78  GIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPED----EIRKRVDNALKRTG 132

Query: 216 LE----RPVKYLSGGQKRRLSFTIA-ILH-KPQLIILDEPCVGVDPLVRKRMWDLLQVFV 269
           +E    +P   LS GQK+R++  IA +L  +P+++ILDEP  G+DP+    +  LL    
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVA--IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190

Query: 270 GK-GRTVIMTTQYIEE-ANDASEVAFLYKGRIIAQDSPD 306
            + G T+I+ T  I+        V  + +GR+I Q +P 
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  101 bits (253), Expect = 1e-24
 Identities = 44/213 (20%), Positives = 83/213 (38%), Gaps = 27/213 (12%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
           N +    +  + + +   +LG +  GK+TLL  ++G+    QG+I V             
Sbjct: 18  NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----------- 66

Query: 164 GSKVGYMPQELAMFGELTIKET--------LNFFGMIYGMDESIWLFQMRKYSHVLKLPN 215
              +G++PQ  +     ++ +         +N F      D  + +  +      L L +
Sbjct: 67  --SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY----LNLTH 120

Query: 216 L-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGR 273
           L +R    LSGGQ++ +    AI  + +LI+LDEP   +D   +  +  LL      +  
Sbjct: 121 LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180

Query: 274 TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           TV+ TT    +    +    L   +        
Sbjct: 181 TVVFTTHQPNQVVAIANKTLLLNKQNFKFGETR 213

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  100 bits (250), Expect = 7e-23
 Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 19/212 (8%)

Query: 67  EDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGAS 126
            DE K   +E  D    ++ +   +     K   K  +  L   +   K  E   +LG +
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK---KLGDFQLVVDNGEAKEGEIIGILGPN 303

Query: 127 SAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL 186
             GKTT  + +VG     +G +                  + Y PQ +    + T+++  
Sbjct: 304 GIGKTTFARILVGEITADEGSVTP------------EKQILSYKPQRIFPNYDGTVQQ-- 349

Query: 187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLII 245
            +         S   +   + +  L L  L E  V  LSGG+ ++L     +  +  L +
Sbjct: 350 -YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408

Query: 246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           LD+P   +D   R  +   ++    + + V  
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 13/177 (7%)

Query: 113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQ 172
             K      +LG +  GKTT+LK + G    + G+     G    +  +  G ++    +
Sbjct: 21  TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG-KDEVLKRFRGKEIYNYFK 79

Query: 173 ELAMFGELTIKET--------LNFFGMI-YGMDESIWLFQMRKYSHVLKLPNL-ERPVKY 222
           EL    EL I               G +   + +     +  +   +L + NL  +    
Sbjct: 80  EL-YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138

Query: 223 LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT 279
           LSGG  +RL    ++L +  + I D+P   +D   R  M   ++  + K + VI+  
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVD 194

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 96.3 bits (240), Expect = 2e-21
 Identities = 41/214 (19%), Positives = 87/214 (40%), Gaps = 28/214 (13%)

Query: 71  KEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGK 130
           +    +  ++ + +    A    + +K      + VLN         E  V++G +  GK
Sbjct: 335 QFRIADATEDLQNDSASRAFSYPSLKK---TQGDFVLNVEEGEFSDSEILVMMGENGTGK 391

Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG 190
           TTL+K + G     +G+                   V   PQ++A     T+++   FF 
Sbjct: 392 TTLIKLLAGALKPDEGQD-------------IPKLNVSMKPQKIAPKFPGTVRQL--FFK 436

Query: 191 MIYGMDESIWLFQMRKYSHVLKLPNL----ERPVKYLSGGQKRRLSFTIAILHKPQLIIL 246
            I G   +      +  + V+K   +    ++ V++LSGG+ +R++  +A+     + ++
Sbjct: 437 KIRGQFLN-----PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLI 491

Query: 247 DEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTT 279
           DEP   +D   R     +++ F+    +T  +  
Sbjct: 492 DEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 42/302 (13%), Positives = 102/302 (33%), Gaps = 27/302 (8%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-----KNISQGEIWV------ 150
            +N    +     +  +   L+G +  GK+T LK + G              W       
Sbjct: 88  SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147

Query: 151 ----LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK 206
               L  +   +      +     PQ +       IK  +   G +  +        +++
Sbjct: 148 RGSELQNYFTKMLEDDIKA--IIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSPEDVKR 204

Query: 207 YSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
           Y  +L+L N+ +R ++ LSGG+ +R +  ++ + +  + + DEP   +D   R     ++
Sbjct: 205 YIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264

Query: 266 QVFVGKGRTVIMTTQYIEEAND-ASEVAFLY-----KGRIIAQDSPDGFKSKYSMPKLSD 319
           +  +   + VI     +   +  +  V  +Y      G +    S     + +    +  
Sbjct: 265 RSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPA 324

Query: 320 VFYKITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMG 379
              +   +        A+ ++  + +        P ++K     + N   G       + 
Sbjct: 325 ENLRFRTEALQF--RIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILV 382

Query: 380 VV 381
           ++
Sbjct: 383 MM 384

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 91.1 bits (227), Expect = 4e-21
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L   S  V+  E   L+G + AGK+TLL  + G+ +  +G I   G    +        
Sbjct: 15  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG 225
              Y+ Q+        +   L            +          +     L R    LSG
Sbjct: 74  HRAYLSQQQTPPFATPVWHYLT-LHQHDKTRTELLNDVAGA-LALDDK--LGRSTNQLSG 129

Query: 226 GQKRRLSF-------TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM- 277
           G+ +R+         T       QL++LDEP   +D   +  +  +L     +G  ++M 
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189

Query: 278 ------TTQYIEEANDASEVAFLYKGRIIAQDSPD 306
                 T ++      A     L  G+++A    +
Sbjct: 190 SHDLNHTLRH------AHRAWLLKGGKMLASGRRE 218

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 88.0 bits (219), Expect = 3e-19
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 37/225 (16%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYHK 161
           +  VLN+ SL +   E   ++GAS  GKTTLL+ + G +    GEI  L G    S    
Sbjct: 16  NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS-LSGKTIFSKNTN 74

Query: 162 TAGSK--VGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS---------H 209
               +  +GY+ QE  +F  LT+    N  +G+              K            
Sbjct: 75  LPVRERRLGYLVQEGVLFPHLTVYR--NIAYGL-----------GNGKGRTAQERQRIEA 121

Query: 210 VLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL 264
           +L+L  +     R    LSGGQ++R +   A+   P+LI+LDEP   +D  +R+++  D+
Sbjct: 122 MLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181

Query: 265 LQVFVGKGRTVIMTT--QYIEEAND-ASEVAFLYKGRIIAQDSPD 306
           +      G++ +  +  +  EEA   A  +A + +GRI+   SP 
Sbjct: 182 IAALRANGKSAVFVSHDR--EEALQYADRIAVMKQGRILQTASPH 224

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 46/266 (17%)

Query: 64  EEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLL 123
               +EG  E  EK  +     +    +   +          VL + +  ++R +   + 
Sbjct: 11  TAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVA 70

Query: 124 GASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK 183
           G++ AGKT+LL  I+G    S+G+I   G             ++ +  Q   +    TIK
Sbjct: 71  GSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPG-TIK 116

Query: 184 ETLNFFGMIYGMDESIWLFQMRKYSHVLK----------LPNL------ERPVKYLSGGQ 227
           E  N  G+ Y  DE        +Y  V+K                    E  +  LSGGQ
Sbjct: 117 E--NIIGVSY--DE-------YRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-LSGGQ 164

Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--KGRTVIMTTQYIEEA 285
           + R+S   A+     L +LD P   +D L  K +++           +T I+ T  +E  
Sbjct: 165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE--SCVCKLMANKTRILVTSKMEHL 222

Query: 286 NDASEVAFLYKGRIIAQDSPDGFKSK 311
             A ++  L++G      +    ++ 
Sbjct: 223 KKADKILILHEGSSYFYGTFSELQNL 248

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 41/225 (18%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
               +   S  ++  E   LLG S +GKTT+L+ I GL+  ++G++W +GG   +     
Sbjct: 27  GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW-IGGKRVT--DLP 83

Query: 163 AGS-KVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS---------HVL 211
                VG + Q  A+F  +T+ +  N  FG+           + ++            +L
Sbjct: 84  PQKRNVGLVFQNYALFQHMTVYD--NVSFGL-----------REKRVPKDEMDARVRELL 130

Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL-- 264
           +   LE    R    LSGGQ++R++   A+  +PQ+++ DEP   +D  +R+ +   +  
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190

Query: 265 LQVFVGKGRTVIMTT--QYIEEANDAS-EVAFLYKGRIIAQDSPD 306
           +   +G   T +  T  Q  EEA + +  V  L++G +    +P+
Sbjct: 191 VHDEMGV--TSVFVTHDQ--EEALEVADRVLVLHEGNVEQFGTPE 231

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 86.6 bits (215), Expect = 3e-18
 Identities = 39/214 (18%), Positives = 89/214 (41%), Gaps = 21/214 (9%)

Query: 66  EEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGA 125
           +E+      E +  +  +  + E +      +      +  L      +++ E   ++G 
Sbjct: 331 DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390

Query: 126 SSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET 185
           +  GKTT +K + G++  ++G++                  V Y PQ +    E T+ E 
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYEL 437

Query: 186 LNFFGMIYG-MDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQL 243
                +    ++ + +  ++ K    L + +L +R V+ LSGG+ +R++    +L    +
Sbjct: 438 --LSKIDSSKLNSNFYKTELLKP---LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492

Query: 244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
            +LDEP   +D   R  +   ++  + K  +T +
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 34/196 (17%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL------KNISQGEIWVLG--GHP 155
           N  +     +VK      ++G +  GKTT +K + G       ++    +  +    G+ 
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163

Query: 156 ASIY-HKTAGSKVGYMPQE-------LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY 207
              Y  +    ++  + +         A+ G   ++E L        +DE      + K+
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKG--KVRELLK------KVDE------VGKF 209

Query: 208 SHVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
             V+K   LE    R +  LSGG+ +R++   A+L K      DEP   +D   R ++  
Sbjct: 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 269

Query: 264 LLQVFVGKGRTVIMTT 279
           +++    +G+ V++  
Sbjct: 270 VIRRLANEGKAVLVVE 285

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 83.8 bits (208), Expect = 7e-18
 Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 46/225 (20%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH-----PASI 158
           N  L+N SL V+  E+FV+LG + AGKT  L+ I G      G I  L G          
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVTDLSP-- 69

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS------HVL 211
             K     + ++ Q  ++F  + +K+  N  FGM           +M+K           
Sbjct: 70  -EK---HDIAFVYQNYSLFPHMNVKK--NLEFGM-----------RMKKIKDPKRVLDTA 112

Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL-- 264
           +   +E    R    LSGG+++R++   A++  P++++LDEP   +DP  ++     L  
Sbjct: 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172

Query: 265 LQVFVGKGRTVIMTT--QYIEEANDASE-VAFLYKGRIIAQDSPD 306
           L        TV+  T  Q   EA   ++ +A +  G++I    P+
Sbjct: 173 LHKKNKL--TVLHITHDQ--TEARIMADRIAVVMDGKLIQVGKPE 213

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 23/214 (10%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHK 161
            +    L V R +   L+GA+ AGKTT L AI GL    +G+I   G      PA   H 
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA---HV 77

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNL-ER- 218
                +  +P+   +F ELT+ E L          E I     R    +  L P L ER 
Sbjct: 78  INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI----KRDLEWIFSLFPRLKERL 133

Query: 219 --PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
                 LSGG+++ L+   A++ +P+L+++DEP +G+ P++   +++++Q    +G T++
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193

Query: 277 MTTQYIEEANDASEVA----FLYKGRIIAQDSPD 306
           +  Q    A  A +VA     L  G+I+ +    
Sbjct: 194 LVEQ---NALGALKVAHYGYVLETGQIVLEGKAS 224

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 43/215 (20%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 65  EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLG 124
           ++E+      E K  +  +  E E +      +      +  L      +K+ E   ++G
Sbjct: 260 KDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVG 319

Query: 125 ASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE 184
            +  GKTT +K + G++  ++G+I                  V Y PQ +    E T+ E
Sbjct: 320 PNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYE 366

Query: 185 TLNFFGMIYG-MDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQ 242
                 +    ++ + +  ++ K    L + +L +R V  LSGG+ +R++    +L    
Sbjct: 367 L--LSKIDASKLNSNFYKTELLK---PLGIIDLYDREVNELSGGELQRVAIAATLLRDAD 421

Query: 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
           + +LDEP   +D   R  +   ++  + K  +T +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 28/193 (14%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL------KNISQGEIWVLG--GHP 155
           N  +     VVK      ++G +  GK+T +K + G        +    +  +    G+ 
Sbjct: 34  NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93

Query: 156 ASIY-HKTAGSKVGYMPQE-------LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY 207
              Y  K    ++  + +         A+ G   + E L        ++E +        
Sbjct: 94  LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKG--KVIELLKKADETGKLEEVV-------- 143

Query: 208 SHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
              L+L N+ ER +++LSGG+ +R++   A+L        DEP   +D   R      ++
Sbjct: 144 -KALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202

Query: 267 VFVGKGRTVIMTT 279
               +G++V++  
Sbjct: 203 RLSEEGKSVLVVE 215

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 78.7 bits (195), Expect = 8e-17
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 29/204 (14%)

Query: 117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKTAGSKVGYMPQ 172
           R++ VLLG + AGK+  L+ I G+    +GE+ + G      P     +     +G++PQ
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---ER---RGIGFVPQ 77

Query: 173 ELAMFGELTIKETLNF-FGM-IYGMDESIWLFQMRKYSHVLKLPNLE----RPVKYLSGG 226
           + A+F  L++    N  +G+      E     + R+   + +   +     R    LSGG
Sbjct: 78  DYALFPHLSVYR--NIAYGLRNVERVE-----RDRRVREMAEKLGIAHLLDRKPARLSGG 130

Query: 227 QKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-WDL--LQVFVGKGRTVIMTTQYIE 283
           +++R++   A++ +P+L++LDEP   VD   +  +  +L  +Q        ++  T  + 
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV--PILHVTHDLI 188

Query: 284 EANDAS-EVAFLYKGRIIAQDSPD 306
           EA   + EVA +  GRI+ +    
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLK 212

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 47/223 (21%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           +    VL + +  ++R +   + G++ AGKT+LL  I+G    S+G+I   G        
Sbjct: 18  EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 69

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLN-FFGMIYGMDESIWLFQMRKYSHVLK------- 212
                ++ +  Q   +    TIKE  N  FG+ Y  DE        +Y  V+K       
Sbjct: 70  -----RISFCSQFSWIMPG-TIKE--NIIFGVSY--DE-------YRYRSVIKACQLEED 112

Query: 213 ---LPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
                        E  +  LSGGQ+ R+S   A+     L +LD P   +D L  K +++
Sbjct: 113 ISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171

Query: 264 LLQVFVG--KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS 304
                      +T I+ T  +E    A ++  L++G      +
Sbjct: 172 --SCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGT 212

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 72.5 bits (179), Expect = 1e-14
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 45/222 (20%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L + S   +        G S  GK+T+   +      + GEI  + G P  I + +  +
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQP--IDNISLEN 73

Query: 166 ---KVGYMPQELAMFGELTIKETLNFFGMIYGM-----DESIWLFQMRKYSH--VLKLPN 215
              ++G++ Q+ A+    TI+E L      YG+     DE +W      ++   V  +P+
Sbjct: 74  WRSQIGFVSQDSAIMAG-TIRENL-----TYGLEGDYTDEDLWQVLDLAFARSFVENMPD 127

Query: 216 L------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLL 265
                  ER VK +SGGQ++RL+   A L  P++++LDE    +D     +V+K +  L+
Sbjct: 128 QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186

Query: 266 QVFVGKGRTVI-----MTTQYIEEANDASEVAFLYKGRIIAQ 302
                KGRT +     ++T  I    DA ++ F+ KG+I   
Sbjct: 187 -----KGRTTLVIAHRLST--IV---DADKIYFIEKGQITGS 218

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L N S  +   +   LLG + +GK+TLL A + L N   GEI + G    SI  +    
Sbjct: 36  ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRK 94

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW----LFQMRKYSHVLKLPN-LERPV 220
             G +PQ++ +F   T ++ L+     +  D+ IW       +R  S + + P  L+  +
Sbjct: 95  AFGVIPQKVFIF-SGTFRKNLDPNAA-HS-DQEIWKVADEVGLR--SVIEQFPGKLDFVL 149

Query: 221 KY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLLQVFVGKG 272
                 LS G K+ +    ++L K ++++LDEP   +DP    ++R+    L Q F    
Sbjct: 150 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT---LKQAF--AD 204

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKITNDDGTSS 332
            TVI+    IE   +  +   + + ++   DS             +D F          +
Sbjct: 205 CTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL-----YHYPADRFVAGFIGSPKMN 259

Query: 333 GPPAETSKAEEPEVKLE 349
             P + +     +V++E
Sbjct: 260 FLPVKVTATAIDQVQVE 276

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 49/227 (21%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           +     LN  +  +       ++G    GK++LL A++   +  +G + + G        
Sbjct: 15  RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLN-FFGMIYGMDESIWLFQMRKYSHVLK------- 212
                 V Y+PQ+  +  + +++E  N  FG     +E         Y  V++       
Sbjct: 67  -----SVAYVPQQAWIQND-SLRE--NILFGCQL--EE-------PYYRSVIQACALLPD 109

Query: 213 ---LPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD 263
              LP+       E+ V  LSGGQK+R+S   A+     + + D+P   VD  V K +++
Sbjct: 110 LEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168

Query: 264 LLQVFVGKG----RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
              V   KG    +T I+ T  +        +  +  G+I    S  
Sbjct: 169 --NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQ 213

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 59/244 (24%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG------GHPA 156
            + VL   SL  +  +   ++G+S +GK+T L+ I  L+  S+G I V G          
Sbjct: 18  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77

Query: 157 SIYHKTAGSKVGYMPQELAM-------FGELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
                   +++  +   L M       +  +T+ E  N           +    +     
Sbjct: 78  GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE--N-----------VMEAPI----Q 120

Query: 210 VLKLP----------NLER-------PVKY---LSGGQKRRLSFTIAILHKPQLIILDEP 249
           VL L            L +         KY   LSGGQ++R+S   A+  +P +++ DEP
Sbjct: 121 VLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180

Query: 250 CVGVDP-LVRKRMWDLLQVFVG---KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDS 304
              +DP LV     ++L++      +G+T+++ T  +  A   +S V FL++G+I  +  
Sbjct: 181 TSALDPELVG----EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236

Query: 305 PDGF 308
           P+  
Sbjct: 237 PEQV 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 50/432 (11%), Positives = 113/432 (26%), Gaps = 129/432 (29%)

Query: 44  LWVLLLY-ELTLECYTLEKEKEEEEDEG----KEEEEEKEDEGKKEEEEEADEGKNTEKE 98
            W LL   E  ++ +    E+    +        + E+++         E  +    + +
Sbjct: 68  FWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 99  ELKPSNV-------VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL 151
                NV        L    L ++  +  ++ G   +GKT +  A+    +       V 
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK-----VQ 177

Query: 152 GGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL 211
                 I+         ++             ET+              L  ++K  + +
Sbjct: 178 CKMDFKIF---------WLN-----LKNCNSPETV--------------LEMLQKLLYQI 209

Query: 212 KLPNLERP-----VKYLSGGQKRRLSFTIAI-LHKPQLIILDEPCVGVDPLVRKRMWD-- 263
                 R      +K      +  L   +    ++  L++L    V           +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--V----------QNAK 257

Query: 264 LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYK 323
               F    + ++ TT++ +  +    ++      I                    +  K
Sbjct: 258 AWNAFNLSCKILL-TTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVK----SLLLK 309

Query: 324 ITNDDGTSSGPPAETSKAEEPEVKLEYIHTPFIRKIFPVAIFNATMGSPPAGLKMGVVNY 383
             +               + P                          +P    ++ ++  
Sbjct: 310 YLD-----------CRPQDLPRE--------------------VLTTNP---RRLSIIAE 335

Query: 384 ELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLKY-----FPDEESA 438
            +R       +N  +  VN D   K     +S   L+ L+    +  +     FP     
Sbjct: 336 SIRDGLATW-DNWKH--VNCD---KLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 439 EEALKNESLSLL 450
              L    LSL+
Sbjct: 388 PTIL----LSLI 395

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 39/239 (16%), Positives = 90/239 (37%), Gaps = 28/239 (11%)

Query: 16  CPLILPILTPLTLLIYTLCHGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEE 75
            P    ++  +  +   L           +  +   +T+  +  + +   +E   +  + 
Sbjct: 360 APRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDN 419

Query: 76  EKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLK 135
                   +EE+E ++  N E      + ++LN   L +KR   + + G +  GK+TL++
Sbjct: 420 IPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR 479

Query: 136 AIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-AMFGELTIKETLNFFGMIYG 194
           AI   +         + G P          +  Y+  ++     + ++ + +        
Sbjct: 480 AIANGQ---------VDGFPTQ-----EECRTVYVEHDIDGTHSDTSVLDFVF------- 518

Query: 195 MDESIWLFQMRKYSHVLKL----PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
             ES    +      +++       +  P+  LSGG K +L+   A+L    +++LDEP
Sbjct: 519 --ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
              ++ LSGGQK +L        +P LI+LDEP
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEP 928

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 16/210 (7%)

Query: 59  LEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSNVVLNNCSLVVKRRE 118
              E+    D   +  E    EG K +++   +  N E +    S   + + +       
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSS 700

Query: 119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFG 178
              ++G + AGK+TL+  + G    + GE++          H+    ++ Y+ Q      
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYT---------HENC--RIAYIKQHAFAHI 749

Query: 179 ELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTI 235
           E  + +T + +       G D        R+ +           +  + G  +R      
Sbjct: 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN--ENDAEAMNKIFKIEGTPRRIAGIHS 807

Query: 236 AILHKPQLIILDEPCVGVDPLVRKRMWDLL 265
               K          +G +  ++   W  +
Sbjct: 808 RRKFKNTYEYECSFLLGENIGMKSERWVPM 837

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           S  VL   ++ ++  E  V++G S +GK+T L+ +  L++  +GEI +  G         
Sbjct: 36  SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII-DGINLKAKDTN 94

Query: 163 AG---SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQM-RKYSHVLKLPNLER 218
                 +VG + Q   +F  +T+   +            + + +  R+ +    +  L++
Sbjct: 95  LNKVREEVGMVFQRFNLFPHMTVLNNI--------TLAPMKVRKWPREKAEAKAMELLDK 146

Query: 219 PV-------KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP-LVRKRMWDLLQV 267
            V        Y   LSGGQ +R++   A+  +P++++ DEP   +DP +V     ++L V
Sbjct: 147 -VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG----EVLSV 201

Query: 268 FVG---KGRTVIMTTQYIEEANDASEVA----FLYKGRIIAQDSPDGF 308
                 +G T+++ T    E   A EV     F+  G II +  P+  
Sbjct: 202 MKQLANEGMTMVVVTH---EMGFAREVGDRVLFMDGGYIIEEGKPEDL 246

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 68.7 bits (169), Expect = 1e-12
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 36/217 (16%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY-HKTAG 164
           VL+  +  VK      +LG + +GK+TL+  I  L +  +G + V           K   
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV-DELDVRTVKLKDLR 416

Query: 165 SKVGYMPQELAMF-GELTIKETLNFFGMIYGMDESIWL---------FQMRKYSHVLKLP 214
             +  +PQE  +F G  TIKE L + G     D+ I           F       ++ LP
Sbjct: 417 GHISAVPQETVLFSG--TIKENLKW-GREDATDDEIVEAAKIAQIHDF-------IISLP 466

Query: 215 N-LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRMWDLL 265
              +  V    +  SGGQK+RLS   A++ KP+++ILD+    VDP     +   +    
Sbjct: 467 EGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526

Query: 266 QVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
                KG T  + TQ I  A  A ++  L++G++   
Sbjct: 527 -----KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 48/223 (21%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L + +L +++ E    +G S  GK+TL+  I    +++ G+I +  GH   I     GS
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI-DGHN--IKDFLTGS 412

Query: 166 ---KVGYMPQELAMFGELTIKETLNFFGMI-YGM----DESIWLFQMRKYSH--VLKLPN 215
              ++G + Q+  +F + T+KE  N    I  G     DE +        +H  ++ LP 
Sbjct: 413 LRNQIGLVQQDNILFSD-TVKE--N----ILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465

Query: 216 ------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLL 265
                  ER VK LSGGQK+RLS     L+ P ++ILDE    +D     ++++ +  L 
Sbjct: 466 GYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524

Query: 266 QVFVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQ 302
                K RT ++      T         A ++  +  G I+  
Sbjct: 525 -----KDRTTLIVAHRLSTIT------HADKIVVIENGHIVET 556

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 42/192 (21%)

Query: 93  KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
           KN  K   K   V L+N ++ ++  E F +LG S AGKTT ++ I GL   S GE++   
Sbjct: 7   KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY-FD 65

Query: 153 GHPASIYHKTAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLF 202
               +       +    +P          Q  A++  LT  E  N   + + +       
Sbjct: 66  DRLVA------SNGKLIVPPEDRKIGMVFQTWALYPNLTAFE--N---IAFPL------- 107

Query: 203 QMRKYS------------HVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
              K S             +L + + L    + LSG Q++R++   A++  P L++LDEP
Sbjct: 108 TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP 167

Query: 250 CVGVDPLVRKRM 261
              +D  +R   
Sbjct: 168 FSNLDARMRDSA 179

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 58/260 (22%), Positives = 102/260 (39%), Gaps = 64/260 (24%)

Query: 84  EEEEEADEGK---NTEKEELKPSNV----------VLNNCSLVVKRREFFVLLGASSAGK 130
           + E E D GK        E+   +V           L++ S  + + +   L+G S +GK
Sbjct: 323 DLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGK 382

Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS---KVGYMPQELAMFGELTIKETLN 187
           +T+        ++  G I  L GH   +      +       + Q + +F + TI    N
Sbjct: 383 STIANLFTRFYDVDSGSI-CLDGHD--VRDYKLTNLRRHFALVSQNVHLFND-TIAN--N 436

Query: 188 FFGMI-YGM-----DESIWLFQMRKYSH----VLKLPN------LERPVKYLSGGQKRRL 231
               I Y        E I   Q  + +H    +  +P        E     LSGGQ++R+
Sbjct: 437 ----IAYAAEGEYTREQIE--QAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRV 489

Query: 232 SFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIM-----TTQYI 282
           +   A+L    ++ILDE    +D      ++  + +L      K +TV++     +T  I
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-----KNKTVLVIAHRLST--I 542

Query: 283 EEANDASEVAFLYKGRIIAQ 302
           E    A E+  + +G II +
Sbjct: 543 E---QADEILVVDEGEIIER 559

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 24/215 (11%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP-ASIYH 160
               +L   +L VK  +   L+G S  GK+T ++ +  L +   G +  + G    +I  
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS-IDGQDIRTINV 459

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSHVLKL 213
           +     +G + QE  +F   TI E  N   + YG ++   + ++ K       Y  ++KL
Sbjct: 460 RYLREIIGVVSQEPVLFAT-TIAE--N---IRYGREDVT-MDEIEKAVKEANAYDFIMKL 512

Query: 214 PNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           P+       ER  + LSGGQK+R++   A++  P++++LDE    +D      +   L  
Sbjct: 513 PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD- 570

Query: 268 FVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
              +GRT I+    +    +A  +A    G I+ Q
Sbjct: 571 KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 36/220 (16%)

Query: 102  PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH- 160
            PS  VL   SL VK+ +   L+G+S  GK+T+++ +    +   G +  L G      + 
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGKEIKQLNV 1102

Query: 161  KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES---------------IWLFQMR 205
            +   +++G + QE  +F + +I E  N   + YG +                 I  F   
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAE--N---IAYGDNSRVVSYEEIVRAAKEANIHQF--- 1153

Query: 206  KYSHVLKLPN-LERPV----KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKR 260
                +  LP+     V      LSGGQK+R++   A++ +P +++LDE    +D    K 
Sbjct: 1154 ----IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209

Query: 261  MWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
            + + L     +GRT I+    +    +A  +  +  G++ 
Sbjct: 1210 VQEALDK-AREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 60/258 (23%)

Query: 84  EEEEEADEGKNT---EKEELKPSNV----------VLNNCSLVVKRREFFVLLGASSAGK 130
           + E+E DEGK        +L+  NV           L N +L +   +   L+G S +GK
Sbjct: 323 DSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGK 382

Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS---KVGYMPQELAMFGELTIKETLN 187
           +T+   I    +I +G I ++ GH   +   T  S   +V  + Q + +F + T+    N
Sbjct: 383 STIASLITRFYDIDEGHI-LMDGHD--LREYTLASLRNQVALVSQNVHLFND-TVAN--N 436

Query: 188 FFGMI-YGMDESIWLFQMRK-----YSH--VLKLPN------LERPVKYLSGGQKRRLSF 233
               I Y   E     Q+ +     Y+   + K+ N       E  V  LSGGQ++R++ 
Sbjct: 437 ----IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAI 491

Query: 234 TIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRTVIM-----TTQYIEE 284
             A+L    ++ILDE    +D      ++  + +L      K RT ++     +T  IE+
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQ-----KNRTSLVIAHRLST--IEQ 544

Query: 285 ANDASEVAFLYKGRIIAQ 302
           A+   E+  +  G I+ +
Sbjct: 545 AD---EIVVVEDGIIVER 559

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 18/212 (8%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                L + S  V   +   L+G S AGK+T+L+ +    +IS G I +  G    I   
Sbjct: 65  DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI-DGQD--ISQV 121

Query: 162 TAGS---KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPNL 216
           T  S    +G +PQ+  +F + TI + + + G +   ++ +         H  ++  P  
Sbjct: 122 TQASLRSHIGVVPQDTVLFND-TIADNIRY-GRVTAGNDEVEAAAQAAGIHDAIMAFPEG 179

Query: 217 ------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG 270
                 ER +K LSGG+K+R++    IL  P +I+LDE    +D    + +   L   V 
Sbjct: 180 YRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VC 237

Query: 271 KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
             RT I+    +    +A ++  +  G I+ +
Sbjct: 238 ANRTTIVVAHRLSTVVNADQILVIKDGCIVER 269

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 64.5 bits (158), Expect = 7e-12
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 38/227 (16%)

Query: 107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYHKT 162
           L+  S+ V + +  +++G + +GK+TL+  I G     +G ++               + 
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP---AEL 79

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMI-------YGMDESIWLFQMR-------KYS 208
               +    Q      E+T+ E L    +I         ++   +   +        K  
Sbjct: 80  YHYGIVRTFQTPQPLKEMTVLENL----LIGEICPGESPLNSLFYKKWIPKEEEMVEKAF 135

Query: 209 HVLKLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
            +L+   L     R    LSGGQ + +    A++  P++I++DEP  GV P +   +++ 
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195

Query: 265 LQVFVGKGRTVIMTTQYIEE-----ANDASEVAFLYKGRIIAQDSPD 306
           +     KG T ++    IE       N    +  ++ G+IIA+   +
Sbjct: 196 VLELKAKGITFLI----IEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 64.0 bits (157), Expect = 8e-12
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 54/229 (23%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG 164
           V+L+N +L +K+ E   ++G S +GK+TL K I        G++ ++ GH   +      
Sbjct: 23  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHD--LALADPN 79

Query: 165 S---KVGYMPQELAMFGELTIKETLNFFGMI-YG-----MDESIWLFQMRKYSH----VL 211
               +VG + Q+  +    +I +  N    I        +++ I      K +     + 
Sbjct: 80  WLRRQVGVVLQDNVLLNR-SIID--N----ISLANPGMSVEKVI---YAAKLAGAHDFIS 129

Query: 212 KLPN------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRKRM 261
           +L         E+    LSGGQ++R++   A+++ P+++I DE    +D     ++ + M
Sbjct: 130 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188

Query: 262 WDLLQVFVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQDS 304
             +      KGRTVI+      T +      +A  +  + KG+I+ Q  
Sbjct: 189 HKIC-----KGRTVIIIAHRLSTVK------NADRIIVMEKGKIVEQGK 226

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 35/221 (15%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           + ++  L + +  +       L+G + +GK+T+ K +    +  +G+I  +GG   ++  
Sbjct: 30  QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI-KIGGK--NVNK 85

Query: 161 KTAGS---KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH----VLKL 213
               S    +G +PQ+  +F E TIK  + + G +   DE +   +  K +     +  L
Sbjct: 86  YNRNSIRSIIGIVPQDTILFNE-TIKYNILY-GKLDATDEEVI--KATKSAQLYDFIEAL 141

Query: 214 PNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           P         + +K LSGG+++R++    +L  P+++I DE    +D          ++ 
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200

Query: 268 FVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQ 302
            + K RT+I+      T         A  +  L KG+I+ +
Sbjct: 201 -LRKNRTLIIIAHRLSTIS------SAESIILLNKGKIVEK 234

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 49/229 (21%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGGHPAS 157
           P+  VL   +  +   +   L+G + +GK+T    +  L       + G++ +L G P  
Sbjct: 30  PNVQVLQGLTFTLYPGKVTALVGPNGSGKST----VAALLQNLYQPTGGKV-LLDGEPLV 84

Query: 158 IY-HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-------YSH 209
            Y H    ++V  + QE  +FG  + +E  N   + YG+  +  + ++         +  
Sbjct: 85  QYDHHYLHTQVAAVGQEPLLFGR-SFRE--N---IAYGLTRTPTMEEITAVAMESGAHDF 138

Query: 210 VLKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----LVRK 259
           +   P        E   + LSGGQ++ ++   A++ KP+L+ILD     +D      V++
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197

Query: 260 RMWDLLQVFVGKGRTVIM------TTQYIEEANDASEVAFLYKGRIIAQ 302
               L +      RTV++        +       A  + FL +G +  Q
Sbjct: 198 L---LYESPEWASRTVLLITQQLSLAE------RAHHILFLKEGSVCEQ 237

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 47/171 (27%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
            +   LNN +L +K  EF  LLG S +GK+TLL  I G+   + G+I+            
Sbjct: 14  GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF----------- 62

Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
                V  +P          Q  A++  +T+ +  N   + + +       ++RK     
Sbjct: 63  -DEKDVTELPPKDRNVGLVFQNWALYPHMTVYK--N---IAFPL-------ELRKAPREE 109

Query: 209 ---------HVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                     +L +   L R    LSGGQ++R++   A++ +P++++LDEP
Sbjct: 110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 47/171 (27%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
            +   +N  +L +K  EF VLLG S  GKTT L+ I GL+  ++G I+            
Sbjct: 22  GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF----------- 70

Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
                V Y+P          Q  A++  +T+ E  N   + + +       +++K+    
Sbjct: 71  -GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--N---IAFPL-------KIKKFPKDE 117

Query: 209 ---------HVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                     +L++   L R    LSGGQ++R++   AI+ +P ++++DEP
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 41/171 (23%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                +   SL VK  EF +LLG S  GKTT L+ I GL+  S+G+I++ G         
Sbjct: 14  GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLV----- 67

Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
               K  ++P          Q  A++  +T+ +  N   + + +       ++RK     
Sbjct: 68  ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYD--N---IAFPL-------KLRKVPRQE 115

Query: 209 ---------HVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                     +L L   L R  + LSGGQ++R++   AI+ KPQ+ ++DEP
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 47/171 (27%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
                ++  S  VK  EF  LLG S  GKTT L  + G+   + GEI+            
Sbjct: 14  GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF----------- 62

Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
                V  +P          Q  A++  +T+ E  N   + + +       + R+ S   
Sbjct: 63  -DDVLVNDIPPKYREVGMVFQNYALYPHMTVFE--N---IAFPL-------RARRISKDE 109

Query: 209 ---------HVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                      L + N L+R    LSGGQ++R++   A++ +P++++ DEP
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 179 ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL--PNLERPVKYLSGGQKRR------ 230
               +     F        S  + +  +    L +     ERP+ +LSGG++        
Sbjct: 12  SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFR 71

Query: 231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
           L+ ++ +  +  L+ILDEP   +D   R+++  +++ ++ K   VI
Sbjct: 72  LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 37/218 (16%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L   SL VK+ EF  ++GAS +GK+TLL  +  L   ++G++++             G 
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL------------EGK 66

Query: 166 KVGYM-PQELAMF---------------GELTIKETLNFFGMIYGMDESIWLFQMRKY-S 208
           +V Y   +EL++                 ELT  E +    +  G  +     + ++   
Sbjct: 67  EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK----EAKERGE 122

Query: 209 HVLKLPNLERPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL 264
           ++L    L   +      LSGG+++R++   A+ ++P L+  DEP   +D    KR+ D+
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182

Query: 265 LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
                  G +++M T   E A        +  G+++ +
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 16/211 (7%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--- 161
             LNN SL V   + + ++GAS AGK+TL++ +  L+  ++G + V G    ++      
Sbjct: 42  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE-RPV 220
            A  ++G + Q   +    T+   +     +    +       R+ + +L L  L  +  
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD---EVKRRVTELLSLVGLGDKHD 158

Query: 221 KY---LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVI 276
            Y   LSGGQK+R++   A+   P++++ D+    +DP   + + +LL+    + G T++
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218

Query: 277 MTT---QYIEEANDASEVAFLYKGRIIAQDS 304
           + T     ++       VA +  G +I QD+
Sbjct: 219 LITHEMDVVKRI--CDCVAVISNGELIEQDT 247

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 23/258 (8%)

Query: 35  HGCHKFTIRLWVLLLYELTLECYTLEKEKEEEEDEGKEEEEEK-EDEGKKEEEEEADEGK 93
            G     I L     +E     Y + +   +    G+    ++      K   E + +  
Sbjct: 64  VGARDTYIDLI----FEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAI 119

Query: 94  NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG 153
           +   E+L P N+ LN   +   + +  +             K +  + N+ + E      
Sbjct: 120 SAFMEKLIPYNIFLNAIYIRQGQIDAIL------ESDEAREKVVREVLNLDKFETAYKKL 173

Query: 154 HPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR------KY 207
                        +  + +  A+  E  + +       I+         ++       K 
Sbjct: 174 SELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 233

Query: 208 SHVLKLPNLERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRM 261
              +     ERP+ +LSGG++       RL+ ++ +  +  L+ILDEP   +D   R+++
Sbjct: 234 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 293

Query: 262 WDLLQVFVGKGRTVIMTT 279
             +++ ++ K   VI+ +
Sbjct: 294 ITIMERYLKKIPQVILVS 311

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 63/234 (26%)

Query: 84  EEEEEADEGKNTEKEELK-------------PSNVVLNNCSLVVKRREFFVLLGASSAGK 130
           + EEE D+    E  E++                 VL + +  +K  +   L+G + +GK
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGK 394

Query: 131 TTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS---KVGYMPQELAMFGELTIKETLN 187
           TT++  ++   ++ +G+I V  G    I      S    +G + Q+  +F   T+KE L 
Sbjct: 395 TTIVNLLMRFYDVDRGQILV-DGID--IRKIKRSSLRSSIGIVLQDTILFST-TVKENL- 449

Query: 188 FFGMIYG-----MDESIWLFQMRKYSHV----LKLPNLERPVKY----------LSGGQK 228
                YG      +E     +  K +H       LP       Y          LS GQ+
Sbjct: 450 ----KYGNPGATDEEIK---EAAKLTHSDHFIKHLPE-----GYETVLTDNGEDLSQGQR 497

Query: 229 RRLSFTIAILHKPQLIILDEPCVGVD----PLVRKRMWDLLQVFVGKGRT--VI 276
           + L+ T A L  P+++ILDE    VD      ++  MW L+     +G+T  +I
Sbjct: 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-----EGKTSIII 546

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 22/222 (9%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA-- 163
            L N +L +K  EF  ++G S +GK+T+L  I  L   ++GE++ +     +        
Sbjct: 20  ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY-IDNIKTNDLDDDELT 78

Query: 164 ---GSKVGYMPQELAMFGELTIKETLNF-FGMIYGMDESIWLFQMRKYS-HVLKLPNL-E 217
                K+G++ Q+  +   LT  E  N    +I+    ++   + RK +   LK+  L E
Sbjct: 79  KIRRDKIGFVFQQFNLIPLLTALE--NVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136

Query: 218 RPVKY----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--- 270
           R   +    LSGGQ++R++   A+ + P +I+ D+P   +D    K    ++Q+      
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD---SKTGEKIMQLLKKLNE 193

Query: 271 -KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK 311
             G+TV++ T  I  A     + +L  G +  ++   GF  +
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDDR 235

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 47/171 (27%)

Query: 102 PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK 161
              VV  + +L +   EF V +G S  GK+TLL+ I GL+ I+ G++++           
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI----------- 62

Query: 162 TAGSKVGYMP----------QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--- 208
               ++   P          Q  A++  L++ E  N   M +G+       ++       
Sbjct: 63  -GEKRMNDTPPAERGVGMVFQSYALYPHLSVAE--N---MSFGL-------KLAGAKKEV 109

Query: 209 ---------HVLKL-PNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP 249
                     VL+L   L+R  K LSGGQ++R++    ++ +P + +LDEP
Sbjct: 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 41  TIRLWVLLLYELTLECYTLEKEKE-EEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEE 99
           +IR W         E    E+ K  +E D   +  E++  E  K++ EE ++ ++ + E+
Sbjct: 86  SIRKWR--------E----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133

Query: 100 LKPSN 104
            K +N
Sbjct: 134 NKINN 138

>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ... Length = 237

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 58  TLEKEKEEEEDEGKEEEEEKEDEGKKEEEEEADEGKNTEKEELKPSN 104
            L  E+ E E +  +           EE  EA    +   EE+K   
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEA 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.96
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.96
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.94
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.93
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.93
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.93
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.91
2og2_A	359	Putative signal recognition particle receptor; nuc	99.91
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.9
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.9
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.9
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.9
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.9
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.9
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.88
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.88
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.87
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.87
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.85
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.85
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.84
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.84
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.83
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.83
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.81
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.81
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.8
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.79
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.78
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.77
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.77
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.77
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.74
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.71
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.7
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.69
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.69
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.68
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.67
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.66
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.66
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.66
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.64
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.64
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.63
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.61
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.56
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.54
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.54
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.54
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.51
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.51
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.51
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.5
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.49
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.49
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.46
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.44
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.43
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.42
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.42
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.39
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.35
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.34
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.34
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.31
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.3
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.28
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.27
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.23
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.21
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.2
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.16
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.14
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.06
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.05
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.04
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.03
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.82
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.81
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.73
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.72
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.71
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.68
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.67
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.64
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.63
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.62
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.62
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.62
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.61
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.59
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.59
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.57
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.51
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.38
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.37
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.22
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.21
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.19
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.19
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.16
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.14
3cni_A	156	Putative ABC type-2 transporter; structural genomi	98.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.11
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.1
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.09
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.08
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.07
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.03
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.03
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.0
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.99
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.98
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.98
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.95
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.89
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.85
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.8
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.74
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.71
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.66
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.62
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.62
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.57
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.52
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.5
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.49
3bos_A	242	Putative DNA replication factor; P-loop containing	97.47
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.47
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.44
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.42
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.41
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.37
3ice_A	422	Transcription termination factor RHO; transcriptio	97.32
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.31
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.3
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.29
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.29
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.27
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.27
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.25
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.23
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.19
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.17
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.14
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.12
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.1
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.1
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.08
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.06
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.99
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.98
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.88
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.84
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.84
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.82
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.79
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.73
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.71
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.69
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.63
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.63
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.51
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.51
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.49
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.44
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.38
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.37
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.37
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.36
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.35
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.33
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.31
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.25
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.23
3io5_A	333	Recombination and repair protein; storage dimer, i	96.22
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.2
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.2
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.16
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.16
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.15
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.13
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.08
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.06
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.98
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.97
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.96
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.96
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.95
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.94
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.92
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.92
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.89
1via_A	175	Shikimate kinase; structural genomics, transferase	95.89
3co5_A	143	Putative two-component system transcriptional RES	95.82
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.8
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.79
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.77
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.72
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.7
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.7
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.69
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.67
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.64
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.6
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.55
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.54
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.53
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.51
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.51
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.49
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.48
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.47
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.47
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.46
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.42
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.39
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.38
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.38
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.38
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.34
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.31
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.31
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.3
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.3
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.28
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.28
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.28
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.28
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.27
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.27
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.26
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.25
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.24
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.23
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.23
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.19
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.18
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.16
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.15
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.14
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.13
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.12
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.11
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.09
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.09
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.06
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.05
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.05
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.03
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.03
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.91
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.9
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.8
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.79
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.77
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.75
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.74
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.73
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.73
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.72
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.71
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.71
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.71
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.7
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.7
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.69
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.68
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.66
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.66
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.63
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.63
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.61
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.59
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.58
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.58
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.58
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.55
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.54
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.53
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.52
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.51
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.51
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.51
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.5
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.49
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.49
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.48
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.48
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.48
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.47
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.47
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.47
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.46
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.46
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.46
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.45
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.43
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.42
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.41
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.4
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.39
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.36
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.35
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.33
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.33
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.32
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.32
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.29
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.26
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.25
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.23
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.21
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.21
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.19
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.19
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.18
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.18
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.17
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.15
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.11
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.1
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.1
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.05
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.0
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.98
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.98
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.98
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	93.95
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.93
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.93
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.89
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.87
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.87
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.85
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.84
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.72
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.57
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.56
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.5
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.47
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.45
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.44
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.4
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.37
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.32
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.29
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.29
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.26
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.25
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.25
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.23
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.16
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.13
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	93.12
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.11
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.91
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	92.78
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	92.71
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	92.6
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	92.46
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	92.42
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.37
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	92.31
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.3
1wxq_A	397	GTP-binding protein; structural genomics, riken st	92.24
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	92.13
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	91.32
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	91.64
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.61
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	91.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	91.44
3pvs_A	447	Replication-associated recombination protein A; ma	91.34
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	91.2
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.04
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	91.02
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.87
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	90.75
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	90.75
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	90.69
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	90.64
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	90.56
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	90.51

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=2.2e-57  Score=465.50  Aligned_cols=229  Identities=21%  Similarity=0.301  Sum_probs=208.1

Q ss_pred             ccCceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh--
Q psy10858         86 EEEADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK--  161 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~--  161 (457)
                      ..++|+++||+|+|+++  ...||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+..  
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            34689999999999752  25799999999999999999999999999999999999999999999999998754432  


Q ss_pred             -hhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        162 -TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       162 -~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                       ..|++|||+||++.+++.+||+||+.+....++.++++..+++.++++.++|.. .++++.+|||||||||+|||||++
T Consensus       101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~  180 (366)
T 3tui_C          101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  180 (366)
T ss_dssp             HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence             236789999999999999999999999988888888888889999999999965 799999999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM  314 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~  314 (457)
                      +|++||||||||||||..++.++++++.++ +.|+|||+|||||+++.. ||||++|++|++++.|++++++.....
T Consensus       181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~  257 (366)
T 3tui_C          181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT  257 (366)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCS
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence            999999999999999999999999987765 459999999999999975 999999999999999999999876543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-57  Score=443.80  Aligned_cols=235  Identities=25%  Similarity=0.379  Sum_probs=211.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++|+++||+++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....+++|
T Consensus        14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i   90 (256)
T 1vpl_A           14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI   90 (256)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred             CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence            58999999999987  889999999999999999999999999999999999999999999999988754 223456789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+||++.+++.+||+||+.++...++.+.++..+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||
T Consensus        91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL  170 (256)
T 1vpl_A           91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL  170 (256)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999999877677766666677888999999965 7899999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT  325 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~~  325 (457)
                      ||||+|||+.+++.++++++.++++|+|||++||+++++.. |||+++|++|++++.|+++++.+.+....++++|....
T Consensus       171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~l~~~~~~~~  250 (256)
T 1vpl_A          171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVV  250 (256)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred             eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhhHHHHHHHHh
Confidence            99999999999999999988877779999999999999976 99999999999999999999987655566778776543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.2e-57  Score=463.51  Aligned_cols=224  Identities=26%  Similarity=0.355  Sum_probs=203.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhcC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAGS  165 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r~  165 (457)
                      ++|+++||+|+|++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...  .....++
T Consensus         3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r   80 (359)
T 3fvq_A            3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER   80 (359)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred             cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence            47999999999998  8999999999999999999999999999999999999999999999999887321  1123357


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++|
T Consensus        81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL  160 (359)
T 3fvq_A           81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI  160 (359)
T ss_dssp             CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            89999999999999999999999887777777778888999999999965 79999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        245 ILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||||||||||+..+..+++. .+..++.|+|||+||||++++.. ||||++|++|+|++.|+|+++.+...
T Consensus       161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~  231 (359)
T 3fvq_A          161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA  231 (359)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence            99999999999999999987 45556679999999999999975 99999999999999999999987643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1e-56  Score=441.83  Aligned_cols=223  Identities=20%  Similarity=0.324  Sum_probs=201.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--CCchhhhcC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIYHKTAGS  165 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--~~~~~~~r~  165 (457)
                      ++|+++||+++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.  .......++
T Consensus        23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~  100 (263)
T 2olj_A           23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE  100 (263)
T ss_dssp             CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred             heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence            47999999999987  88999999999999999999999999999999999999999999999998874  112223456


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +|||+||++.+++.+||+||+.++. ..++.+.++..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus       101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l  180 (263)
T 2olj_A          101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI  180 (263)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence            7999999999999999999999864 4556666666678889999999964 7899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||||||+||||.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+..
T Consensus       181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  250 (263)
T 2olj_A          181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP  250 (263)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            99999999999999999999988876679999999999999975 9999999999999999999987653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=9.5e-57  Score=463.14  Aligned_cols=221  Identities=28%  Similarity=0.400  Sum_probs=206.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++||+|+|++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .++.||
T Consensus         3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~--~~r~ig   78 (381)
T 3rlf_A            3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG   78 (381)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSCEE
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH--HHCCEE
Confidence            6999999999998  899999999999999999999999999999999999999999999999998865433  246799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++.+|+.+||+||+.|+.+.++.++++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus        79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD  158 (381)
T 3rlf_A           79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (381)
T ss_dssp             EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999988888888888899999999999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||+..+..+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus       159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~  226 (381)
T 3rlf_A          159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  226 (381)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence            99999999999999999877754 49999999999999975 99999999999999999999987654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=4.1e-57  Score=447.50  Aligned_cols=224  Identities=21%  Similarity=0.280  Sum_probs=201.3

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--chhhhc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--YHKTAG  164 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--~~~~~r  164 (457)
                      +++|+++||+++|++. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...  .....+
T Consensus         5 ~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~   83 (275)
T 3gfo_A            5 DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR   83 (275)
T ss_dssp             CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred             CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence            3589999999999752 4699999999999999999999999999999999999999999999999987421  122346


Q ss_pred             CcEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        165 SKVGYMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       165 ~~IGyvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ++|||+||++. .+..+||+||+.+....++.+.++..+++.++++.++|.. .++++.+|||||||||+|||||+++|+
T Consensus        84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~  163 (275)
T 3gfo_A           84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK  163 (275)
T ss_dssp             HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            78999999973 3447899999999888788888888888999999999965 799999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|||||||+||||.+++.++++++.++ ++|+|||+||||++++.. ||||++|++|++++.|+++++++.
T Consensus       164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            999999999999999999999988775 559999999999999975 999999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-56  Score=440.24  Aligned_cols=223  Identities=22%  Similarity=0.324  Sum_probs=200.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC----------
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS----------  157 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~----------  157 (457)
                      ++|+++||+++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..          
T Consensus         5 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (262)
T 1b0u_A            5 NKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   82 (262)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             ceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence            58999999999987  889999999999999999999999999999999999999999999999988741          


Q ss_pred             Cch---hhhcCcEEEEcCCCCCCCCCCHHHHHHHhh-hhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858        158 IYH---KTAGSKVGYMPQELAMFGELTIKETLNFFG-MIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL  231 (457)
Q Consensus       158 ~~~---~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~-~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl  231 (457)
                      ...   ...+++|||+||++.+++.+||+||+.+.. ..++.+..+..+++.++++.+++..  +++++.+|||||||||
T Consensus        83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv  162 (262)
T 1b0u_A           83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV  162 (262)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred             cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHH
Confidence            111   123567999999999999999999999854 4556666666678889999999964  6899999999999999


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +|||||+++|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus       163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  242 (262)
T 1b0u_A          163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  242 (262)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999988877679999999999999975 99999999999999999999876


Q ss_pred             cC
Q psy10858        311 KY  312 (457)
Q Consensus       311 ~~  312 (457)
                      ..
T Consensus       243 ~~  244 (262)
T 1b0u_A          243 NP  244 (262)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=2.2e-56  Score=428.76  Aligned_cols=215  Identities=26%  Similarity=0.305  Sum_probs=194.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh-
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA-  163 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~-  163 (457)
                      ++|+++|++++|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......   .. 
T Consensus         3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   80 (224)
T 2pcj_A            3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR   80 (224)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred             cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence            47999999999987  8899999999999999999999999999999999999999999999999987643321   12 


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +++|||+||++.+++.+||+||+.+....++.+.++..+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus        81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~  160 (224)
T 2pcj_A           81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI  160 (224)
T ss_dssp             HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred             hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            2579999999999999999999998776667666666677889999999965 789999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs  304 (457)
                      +|||||||+|||+.+++.++++++.++++|+|||++|||++++..||++++|++|++++.|+
T Consensus       161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            99999999999999999999998887767999999999999986699999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1.3e-56  Score=433.51  Aligned_cols=221  Identities=23%  Similarity=0.355  Sum_probs=194.1

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh----
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT----  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~----  162 (457)
                      +|+++||+++|+++.  ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.......    
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            589999999997422  46999999999999999999999999999999999999999999999999886544322    


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHh
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      .++.|||+||++.+++.+||+||+.+.....   +.+.++..+++.++++.+++..  .++++.+|||||||||+|||||
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral  160 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            2346999999999999999999999876543   4556667778889999999964  4899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      +++|++|||||||+|||+.+++.++++++.++++ |+|||+||||++.+..||||++|++|+++..++++++.
T Consensus       161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence            9999999999999999999999999998877554 99999999999977679999999999999999887653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=6.2e-56  Score=453.56  Aligned_cols=224  Identities=25%  Similarity=0.375  Sum_probs=205.2

Q ss_pred             ccCceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         86 EEEADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        86 ~~~~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      ...+|+++|++|+| ++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++....  ..+
T Consensus        11 ~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~   86 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--PQK   86 (355)
T ss_dssp             CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC--GGG
T ss_pred             CCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC--hhh
Confidence            45689999999999 76  78999999999999999999999999999999999999999999999999876432  235


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ++||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++
T Consensus        87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l  166 (355)
T 1z47_A           87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV  166 (355)
T ss_dssp             SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            789999999999999999999999887777777777888999999999965 7999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|+|++.|+++++.+...
T Consensus       167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~  238 (355)
T 1z47_A          167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG  238 (355)
T ss_dssp             EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            999999999999999999999877654 49999999999999965 99999999999999999999987643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=4.9e-56  Score=437.44  Aligned_cols=227  Identities=21%  Similarity=0.307  Sum_probs=202.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++|+++|++++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........++.+
T Consensus        10 ~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i   87 (266)
T 4g1u_C           10 ALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR   87 (266)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred             ceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence            58999999999998  8999999999999999999999999999999999999999999999999998765544556789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc------C
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH------K  240 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~------~  240 (457)
                      ||++|++.+++.+||+||+.++...+.  .....+++.++++.+++.. .++++.+|||||||||+|||||++      +
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           88 AVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             EEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             EEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence            999999999889999999998765442  2334567888999999965 789999999999999999999999      9


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS  318 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~  318 (457)
                      |++|||||||+||||.++..++++++.++++ |+|||++|||++++.. ||||++|++|++++.|+++++.+.   ..+.
T Consensus       166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~---~~l~  242 (266)
T 4g1u_C          166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA---ETLT  242 (266)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH---HHHH
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc---HHHH
Confidence            9999999999999999999999998777544 6899999999999975 999999999999999999998753   4555


Q ss_pred             HHH
Q psy10858        319 DVF  321 (457)
Q Consensus       319 ~~f  321 (457)
                      +.|
T Consensus       243 ~~~  245 (266)
T 4g1u_C          243 QWY  245 (266)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            555

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=9.3e-56  Score=428.51  Aligned_cols=220  Identities=24%  Similarity=0.315  Sum_probs=195.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~  166 (457)
                      ++|+++|++++|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... .+++
T Consensus         5 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (240)
T 1ji0_A            5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             ceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence            58999999999987  88999999999999999999999999999999999999999999999999876443222 3456


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-CC-CCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-LP-NLERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      |||+||++.+++.+||+||+.++.. ...+.++..++++++++.++ +. ..++++.+|||||||||+|||||+++|++|
T Consensus        83 i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll  161 (240)
T 1ji0_A           83 IALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL  161 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999999988642 22333445567788888884 84 478999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus       162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            9999999999999999999988876679999999999999864 99999999999999999998865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=7.2e-56  Score=453.75  Aligned_cols=221  Identities=26%  Similarity=0.332  Sum_probs=202.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++|+|++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .+++||
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig   78 (359)
T 2yyz_A            3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVG   78 (359)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEE
T ss_pred             EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEE
Confidence            6999999999987  889999999999999999999999999999999999999999999999998865432  247899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++.+|+.+||+||+.|+.+.++.+.++..+++.++++.++|.. +++++++|||||||||+|||||+.+|++||||
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD  158 (359)
T 2yyz_A           79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD  158 (359)
T ss_dssp             EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999877667666666678899999999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~  226 (359)
T 2yyz_A          159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK  226 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence            99999999999999999877654 49999999999999965 99999999999999999999987643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-55  Score=452.60  Aligned_cols=221  Identities=27%  Similarity=0.369  Sum_probs=203.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .+++||
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig   78 (362)
T 2it1_A            3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNVG   78 (362)
T ss_dssp             CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEE
T ss_pred             EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcEE
Confidence            6999999999987  889999999999999999999999999999999999999999999999998865432  246899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++.+|+.+||+||+.|....++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  158 (362)
T 2it1_A           79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD  158 (362)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999887777777777888999999999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||+..+..+++.++.+.+ .|+|||+||||++++.. ||||++|++|+|++.|+++++.++..
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~  226 (362)
T 2it1_A          159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK  226 (362)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99999999999999999877654 49999999999999965 99999999999999999999987643

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=4e-56  Score=435.19  Aligned_cols=218  Identities=21%  Similarity=0.303  Sum_probs=195.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~  166 (457)
                      ++|+++|++++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..... ...++.
T Consensus         6 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   83 (257)
T 1g6h_A            6 EILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   83 (257)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             cEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            47999999999987  889999999999999999999999999999999999999999999999988754322 223567


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhh--cC-----------CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMI--YG-----------MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l--~g-----------~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRls  232 (457)
                      |||+||++.+++.+||+||+.+....  .+           .+..+..+++.++++.+++.. .++++.+|||||||||+
T Consensus        84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~  163 (257)
T 1g6h_A           84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE  163 (257)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence            99999999999999999999986543  23           233445667888999999964 79999999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhh
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~  307 (457)
                      |||||+++|++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|++++
T Consensus       164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9999999999999999999999999999999988877779999999999999865 99999999999999999988

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=6.7e-56  Score=453.06  Aligned_cols=223  Identities=26%  Similarity=0.349  Sum_probs=202.5

Q ss_pred             ceEEEeeEEEeCCCCce--eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhhh
Q psy10858         89 ADEGKNTEKEELKPSNV--VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~--aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~~  163 (457)
                      +|+++|++++|++  +.  +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++....   ....
T Consensus         3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~   80 (353)
T 1oxx_K            3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE   80 (353)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred             EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence            6999999999987  77  999999999999999999999999999999999999999999999998764310   1123


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      +++||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|+
T Consensus        81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~  160 (353)
T 1oxx_K           81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS  160 (353)
T ss_dssp             GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999877777777777788999999999965 799999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      +|||||||+|||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus       161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~  233 (353)
T 1oxx_K          161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV  233 (353)
T ss_dssp             EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            9999999999999999999999877654 49999999999999965 99999999999999999999987643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.8e-55  Score=452.76  Aligned_cols=221  Identities=29%  Similarity=0.377  Sum_probs=202.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC------Cchhh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS------IYHKT  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~------~~~~~  162 (457)
                      +|+++|++++|++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..      ..  .
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~--~   78 (372)
T 1g29_1            3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP--P   78 (372)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC--G
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC--H
Confidence            5899999999987  889999999999999999999999999999999999999999999999987643      21  2


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      .+++||||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|
T Consensus        79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            24689999999999999999999999888778887777888999999999965 79999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ++|||||||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.+...
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~  232 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA  232 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence            99999999999999999999999877654 49999999999999965 99999999999999999999987643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.1e-55  Score=452.16  Aligned_cols=221  Identities=25%  Similarity=0.340  Sum_probs=195.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++  +.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .+++||
T Consensus        11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig   86 (372)
T 1v43_A           11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS   86 (372)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred             eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEE
Confidence            5999999999987  889999999999999999999999999999999999999999999999998865432  246799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++.+|+.+||+||+.|+...++.+.++..+++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus        87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  166 (372)
T 1v43_A           87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  166 (372)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999999877777777777788999999999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||||||+..++.+++.++.+.+ .|+|||+||||++++.. ||||++|++|++++.|+++++.++..
T Consensus       167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~  234 (372)
T 1v43_A          167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN  234 (372)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence            99999999999999999877654 49999999999999965 99999999999999999999987643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=4.3e-55  Score=446.35  Aligned_cols=217  Identities=26%  Similarity=0.413  Sum_probs=197.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++++|++  + +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....  .+++||
T Consensus         1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig   75 (348)
T 3d31_A            1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA   75 (348)
T ss_dssp             CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred             CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence            5899999999987  7 9999999999999999999999999999999999999999999999998764322  346799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++.+|+.+||+||+.|+...++.+..   +++.++++.++|.. +++++.+|||||||||+|||||+.+|++||||
T Consensus        76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD  152 (348)
T 3d31_A           76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD  152 (348)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999999998776665443   67888999999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+|||+..++.+++.++.+. +.|+|||+||||++++.. ||||++|++|++++.|+++++.++..
T Consensus       153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~  220 (348)
T 3d31_A          153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV  220 (348)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence            9999999999999999987764 459999999999999965 99999999999999999999987644

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=8.9e-55  Score=422.50  Aligned_cols=215  Identities=25%  Similarity=0.363  Sum_probs=191.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++|++++|++    +|+||||+|++ |++||+||||||||||+|+|+|+++|++|+|.++|+++....  ..+++||
T Consensus         1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~   73 (240)
T 2onk_A            1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG   73 (240)
T ss_dssp             CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred             CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence            5889999999975    39999999999 999999999999999999999999999999999998875422  2356899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+++.+||+||+.+....++.+  ...+++.++++.+++.. .++++.+|||||||||+|||||+++|++||||
T Consensus        74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  151 (240)
T 2onk_A           74 FVPQDYALFPHLSVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD  151 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred             EEcCCCccCCCCcHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            9999999999999999999865544322  22567888999999965 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      |||+|||+.+++.++++++.+++ .|+|||++|||++++.. |||+++|++|++++.|+++++.+..
T Consensus       152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  218 (240)
T 2onk_A          152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            99999999999999999877654 49999999999999865 9999999999999999999987654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.5e-54  Score=429.77  Aligned_cols=230  Identities=21%  Similarity=0.357  Sum_probs=195.5

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC--CCchhhhc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA--SIYHKTAG  164 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~--~~~~~~~r  164 (457)
                      .++|+++||+++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.  .......+
T Consensus        19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   96 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR   96 (279)
T ss_dssp             CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred             CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence            357999999999987  88999999999999999999999999999999999999999999999998875  33333456


Q ss_pred             CcEEEEcCCCCCC--CCCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        165 SKVGYMPQELAMF--GELTIKETLNFFGM----IYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       165 ~~IGyvpQ~~~L~--~~lTV~EnL~~~~~----l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++|||+||++.++  ..+||+||+.+...    +++...++..+++.++++.+++.. +++++.+|||||||||+|||||
T Consensus        97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL  176 (279)
T 2ihy_A           97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL  176 (279)
T ss_dssp             TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence            7899999997643  35699999987532    122223344567888999999964 7899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCc
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTV--IMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSM  314 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TI--IisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~  314 (457)
                      +.+|++|||||||+|||+.+++.++++++.++++|+||  |++|||++++.. |||+++|++|++++.|+++++.+.   
T Consensus       177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~---  253 (279)
T 2ihy_A          177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS---  253 (279)
T ss_dssp             HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH---
T ss_pred             hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc---
Confidence            99999999999999999999999999987776569999  999999999864 999999999999999999988643   


Q ss_pred             ccHHHHH
Q psy10858        315 PKLSDVF  321 (457)
Q Consensus       315 ~~l~~~f  321 (457)
                      ..+.++|
T Consensus       254 ~~~~~~~  260 (279)
T 2ihy_A          254 ENMSRFF  260 (279)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            3344444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=3.6e-54  Score=423.53  Aligned_cols=219  Identities=25%  Similarity=0.363  Sum_probs=193.2

Q ss_pred             ceEEEeeEEEeCCCC---ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         89 ADEGKNTEKEELKPS---NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~---~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      +|+++|++++|+.++   +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...   ..++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence            689999999997222   4799999999999999999999999999999999999999999999999877431   3467


Q ss_pred             cEEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--C-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        166 KVGYMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--N-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       166 ~IGyvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      +|||+||++ .+++.+||+||+.++...+ .+..+..+++.++++.+++.  . .++++.+|||||||||+|||||+++|
T Consensus        79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p  157 (266)
T 2yz2_A           79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP  157 (266)
T ss_dssp             GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence            899999996 5667799999999865433 33333346678899999997  6 78999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|||||||+|||+.+++.++++++.++++|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus       158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  228 (266)
T 2yz2_A          158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK  228 (266)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999988876669999999999999975 999999999999999999988754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4.7e-53  Score=411.86  Aligned_cols=217  Identities=23%  Similarity=0.268  Sum_probs=186.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhh-hcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKT-AGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~-~r~  165 (457)
                      +|+++|++++|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+  ++|++|+|+++|+++....... .+.
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (250)
T 2d2e_A            3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK   80 (250)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred             eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence            6999999999987  8899999999999999999999999999999999999  7899999999999876543222 245


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhh-hcC--CCHHHHHHHHHHHHhHcCCC-C-CCCCCCC-CChhHHHHHHHHHHhhc
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGM-IYG--MDESIWLFQMRKYSHVLKLP-N-LERPVKY-LSGGQKRRLSFTIAILH  239 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~-l~g--~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~-LSGGqkQRlsLA~ALl~  239 (457)
                      .+||+||++.+++.+||+||+.+... ..+  .+..+..+++.++++.+++. . .++++++ |||||||||+|||||++
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~  160 (250)
T 2d2e_A           81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL  160 (250)
T ss_dssp             TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred             cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence            69999999999999999999987653 223  23344556788899999994 4 6899999 99999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhh
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDG  307 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~  307 (457)
                      +|++|||||||+|||+.+++.++++++.++++|+|||++|||++++..  |||+++|++|++++.|+++.
T Consensus       161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            999999999999999999999999988876679999999999999875  59999999999999999873

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1e-52  Score=413.60  Aligned_cols=221  Identities=24%  Similarity=0.263  Sum_probs=191.4

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhhh-
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTA-  163 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~~-  163 (457)
                      .++|+++||+++|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+  .+|++|+|+++|+++........ 
T Consensus        18 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~   95 (267)
T 2zu0_C           18 SHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA   95 (267)
T ss_dssp             --CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred             CceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence            358999999999987  8899999999999999999999999999999999999  47899999999988754332222 


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhh-h---cC---CCHHHHHHHHHHHHhHcCCC-C-CCCCCC-CCChhHHHHHHH
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGM-I---YG---MDESIWLFQMRKYSHVLKLP-N-LERPVK-YLSGGQKRRLSF  233 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-l---~g---~~~~~~~~~~~~ll~~l~L~-~-~~~~~~-~LSGGqkQRlsL  233 (457)
                      ++.|||+||++.+++.+||.||+.+... .   ++   .+.++..+++.++++.+++. . .++++. +|||||||||+|
T Consensus        96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i  175 (267)
T 2zu0_C           96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI  175 (267)
T ss_dssp             HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred             hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence            3459999999999999999999987531 1   22   34445566788899999995 3 688887 599999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc--cCeEEEEeCCeEEEecChhhhh
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND--ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~--~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ||||+++|++|||||||+|||+.+++.++++++.++++|+|||++|||++++..  |||+++|++|++++.|+++++.
T Consensus       176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            999999999999999999999999999999988876679999999999999864  8999999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.1e-52  Score=409.00  Aligned_cols=213  Identities=23%  Similarity=0.308  Sum_probs=183.5

Q ss_pred             ceEEEeeEEEe--CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         89 ADEGKNTEKEE--LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~y--g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      -|+++||+++|  ++  +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++........+++
T Consensus         7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~   84 (247)
T 2ff7_A            7 DITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ   84 (247)
T ss_dssp             EEEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             ceeEEEEEEEeCCCC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence            48999999999  34  789999999999999999999999999999999999999999999999998865444445678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA  234 (457)
                      |||+||++.+|+ .||+||+.++..  ..+.    +++.++++.+++.            ..++++.+|||||||||+||
T Consensus        85 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA  157 (247)
T 2ff7_A           85 VGVVLQDNVLLN-RSIIDNISLANP--GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA  157 (247)
T ss_dssp             EEEECSSCCCTT-SBHHHHHTTTCT--TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred             EEEEeCCCcccc-ccHHHHHhccCC--CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence            999999999886 699999987531  2222    2334444544442            13567799999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+++|++|||||||+|||+.+++.++++++.+. +|+|||++||+++++..|||+++|++|++++.|+++++...
T Consensus       158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  233 (247)
T 2ff7_A          158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE  233 (247)
T ss_dssp             HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999999987774 59999999999999877999999999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=2.3e-52  Score=408.30  Aligned_cols=207  Identities=22%  Similarity=0.247  Sum_probs=185.8

Q ss_pred             CceEEEeeEEEeC-CCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEEL-KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg-~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ++|+++|++++|+ +  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+             +++
T Consensus         3 ~~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~   67 (253)
T 2nq2_C            3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQS   67 (253)
T ss_dssp             EEEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSC
T ss_pred             ceEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------ecc
Confidence            3799999999998 6  78999999999999999999999999999999999999999999981             357


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhc-C---CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIY-G---MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-g---~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      |||+||++.+++.+||+||+.++...+ +   .......+++.++++.+++.. .++++.+|||||||||+|||||+++|
T Consensus        68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p  147 (253)
T 2nq2_C           68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC  147 (253)
T ss_dssp             EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            999999999998999999999865322 2   223344567888999999965 78999999999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      ++|||||||+|||+.+++.++++++.++++ |+|||++|||++++. .|||+++|++|+ ++.|+++++.+
T Consensus       148 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~  217 (253)
T 2nq2_C          148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT  217 (253)
T ss_dssp             SEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence            999999999999999999999998877666 999999999999996 599999999999 99999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=5.4e-53  Score=416.60  Aligned_cols=222  Identities=20%  Similarity=0.250  Sum_probs=188.9

Q ss_pred             CceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .+|+++||+++|++ .++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++........+++
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   94 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ   94 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence            57999999999975 22579999999999999999999999999999999999999999999999988754333345668


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHH-----HHHHHHHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIW-----LFQMRKYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~-----~~~~~~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      |||+||++.+|+ .||+||+.++..... ..+..     ...+.++++.+  ++.. .++++.+|||||||||+|||||+
T Consensus        95 i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~  172 (271)
T 2ixe_A           95 VAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI  172 (271)
T ss_dssp             EEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence            999999999887 599999988643221 11111     12234566666  5643 68899999999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ++|+||||||||+|||+.+++.++++++.+.+ +|+|||+|||+++++..||||++|++|++++.|+++++.+.
T Consensus       173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  246 (271)
T 2ixe_A          173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER  246 (271)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999887653 59999999999999877999999999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=9.1e-53  Score=407.99  Aligned_cols=214  Identities=21%  Similarity=0.315  Sum_probs=185.1

Q ss_pred             ceEEEeeEEEe-CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         89 ADEGKNTEKEE-LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        89 ~Iei~nlsk~y-g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ||+++|++++| ++  +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++........+++|
T Consensus         1 ml~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   78 (243)
T 1mv5_A            1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI   78 (243)
T ss_dssp             CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred             CEEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE
Confidence            58999999999 55  7899999999999999999999999999999999999999999999999887654333456789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-C-----------CCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-L-----------ERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~-----------~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+|+ .||+||+.++.. .+...    +++.++++.+++.. .           ++++.+|||||||||+|||
T Consensus        79 ~~v~q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAr  152 (243)
T 1mv5_A           79 GFVSQDSAIMA-GTIRENLTYGLE-GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR  152 (243)
T ss_dssp             CEECCSSCCCC-EEHHHHTTSCTT-SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred             EEEcCCCcccc-ccHHHHHhhhcc-CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHH
Confidence            99999999887 599999987522 12222    33556677777643 2           3456899999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++|||||||+|||+.+++.++++++.+. +|+|||++||+++++..|||+++|++|++++.|+++++...
T Consensus       153 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  227 (243)
T 1mv5_A          153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT  227 (243)
T ss_dssp             HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence            9999999999999999999999999999988776 69999999999998877999999999999999999998764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=7.8e-52  Score=415.60  Aligned_cols=219  Identities=21%  Similarity=0.309  Sum_probs=186.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+++|++. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...+....|+.|
T Consensus        52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i  130 (306)
T 3nh6_A           52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI  130 (306)
T ss_dssp             CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred             CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence            469999999999642 6899999999999999999999999999999999999999999999999998776666677889


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+|+ .||+||+.++....  ..++..+..+     +.++.+  ++. ..++.+.+|||||||||+|||||++
T Consensus       131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~  207 (306)
T 3nh6_A          131 GVVPQDTVLFN-DTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK  207 (306)
T ss_dssp             EEECSSCCCCS-EEHHHHHHTTSTTC--CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCccCc-ccHHHHHHhhcccC--CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence            99999999985 59999998764322  2222222111     112222  221 1467788999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|+||||||||||||+.+++.|++.++.+. +++|||+|||+++.+..||||++|++|+|++.|+++++++.
T Consensus       208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          208 APGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             CCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999999999999987765 47999999999999988999999999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=4.8e-52  Score=405.49  Aligned_cols=211  Identities=20%  Similarity=0.269  Sum_probs=187.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++++++|++++      .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++........++++
T Consensus         3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i   75 (249)
T 2qi9_C            3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR   75 (249)
T ss_dssp             EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred             cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence            37999999987      4799999999999999999999999999999999999999 9999999887543334456689


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc----
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ----  242 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~----  242 (457)
                      ||+||++.+++.+||+||+.++.. .+.+    .+++.++++.+++.. .++++.+|||||||||+|||||+++|+    
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~  150 (249)
T 2qi9_C           76 AYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP  150 (249)
T ss_dssp             EEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred             EEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence            999999999999999999987532 2222    456778899999965 789999999999999999999999999    


Q ss_pred             ---eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccCeEEEEeCCeEEEecChhhhhh
Q psy10858        243 ---LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       243 ---lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                         +|||||||+|||+.+++.++++++.+.++|+|||++|||++++. .|||+++|++|++++.|+++++.+
T Consensus       151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence               99999999999999999999998887666999999999999985 599999999999999999998864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=4.8e-51  Score=400.29  Aligned_cols=215  Identities=20%  Similarity=0.337  Sum_probs=182.5

Q ss_pred             CceEEEeeEEEeCCCC-ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKPS-NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~-~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .+|+++||+++|++.. +.+|+||||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.++........++.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence            5799999999998621 4699999999999999999999999999999999999987 8999999988754433445678


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------CC-----CCCCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------PN-----LERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~~-----~~~~~~~LSGGqkQRlsLA  234 (457)
                      |||+||++.+|+ .||+||+.+...  ....+    ++.++++.+++       +.     .++++.+|||||||||+||
T Consensus        95 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA  167 (260)
T 2ghi_A           95 IGIVPQDTILFN-ETIKYNILYGKL--DATDE----EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA  167 (260)
T ss_dssp             EEEECSSCCCCS-EEHHHHHHTTCT--TCCHH----HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred             EEEEcCCCcccc-cCHHHHHhccCC--CCCHH----HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence            999999999886 699999987431  12222    23344444443       21     2467899999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+++|++|||||||+|||+.+++.++++++.+. +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus       168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  243 (260)
T 2ghi_A          168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL  243 (260)
T ss_dssp             HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            99999999999999999999999999999988775 48999999999999877999999999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-51  Score=422.01  Aligned_cols=216  Identities=24%  Similarity=0.282  Sum_probs=190.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++||+|+|+++++.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++........++.|
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence            5799999999994323789999999999999999999999999999999999998 999999999998765554556789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCC-----------CChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKY-----------LSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~-----------LSGGqkQRlsLA~  235 (457)
                      |||||++.+|+ +||+||+.++.   ...    .+++.++++.++|.. .++++.+           |||||||||+|||
T Consensus        97 g~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR  168 (390)
T 3gd7_A           97 GVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR  168 (390)
T ss_dssp             EEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred             EEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence            99999999997 69999996432   122    245677888899854 6888887           9999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      ||+.+|++|||||||||||+..+..+++.++.. ..++|||++||+++.+..||||++|++|+|++.|+|+++.+...
T Consensus       169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~  245 (390)
T 3gd7_A          169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA  245 (390)
T ss_dssp             HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            999999999999999999999999999998765 45899999999997766799999999999999999999988754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=3.2e-51  Score=391.45  Aligned_cols=202  Identities=19%  Similarity=0.290  Sum_probs=176.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+|+++|++++|++   .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.     ..++.
T Consensus         8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~   79 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK   79 (214)
T ss_dssp             -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred             CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence            358999999999974   7999999999999999999999999999999999999999999999998764     23578


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |||+||++.+++.+||+||+.++...++. ..+ .+++.++++.+++...++++.+|||||||||+|||||+.+|++|||
T Consensus        80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllL  157 (214)
T 1sgw_A           80 IFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL  157 (214)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            99999999999999999999987665553 222 4567888999999533888999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      ||||+|||+.+++.++++++.++++|+|||++||+++++.. ||+++++ .|+|
T Consensus       158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            99999999999999999988776668999999999999976 7776644 5554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.2e-50  Score=398.69  Aligned_cols=209  Identities=25%  Similarity=0.329  Sum_probs=184.3

Q ss_pred             ceEEEeeEEEeCCC--CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         89 ADEGKNTEKEELKP--SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        89 ~Iei~nlsk~yg~~--~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ||+++|++++|++.  .+.+|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++...  .. +++
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~   75 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIR   75 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTT
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhh
Confidence            58999999999641  1469999999999 9999999999999999999999999 9999999999876432  22 578


Q ss_pred             EE-EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        167 VG-YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       167 IG-yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +| |+||++.+  .+||+||+.++...++..    .+++.++++.+++. . .++++.+|||||||||+|||||+++|++
T Consensus        76 i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l  149 (263)
T 2pjz_A           76 YSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI  149 (263)
T ss_dssp             EEECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             eEEEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            99 99999987  889999999876544322    34577888999997 6 6899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-ccC-eEEEEeCCeEEEecChhhhhhc
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-DAS-EVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~~d-ri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||||+|||+.+++.++++++.+.+   |||++|||++++. .|| ++++|++|++++.|+++++.+.
T Consensus       150 llLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~  216 (263)
T 2pjz_A          150 VGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES  216 (263)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred             EEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence            999999999999999999999877643   9999999999986 499 9999999999999999988653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=5.6e-50  Score=385.43  Aligned_cols=202  Identities=25%  Similarity=0.305  Sum_probs=170.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|+++++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             +|
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i   71 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI   71 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence            47999999999963237899999999999999999999999999999999999999999999987             39


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-----CCCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-----NLERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-----~~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+++. ||+||+.++..   .....    ..++++.+++       +     ..++++.+|||||||||+|||
T Consensus        72 ~~v~q~~~~~~~-tv~enl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr  143 (229)
T 2pze_A           72 SFCSQFSWIMPG-TIKENIIFGVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  143 (229)
T ss_dssp             EEECSSCCCCSB-CHHHHHHTTSC---CCHHH----HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred             EEEecCCcccCC-CHHHHhhccCC---cChHH----HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence            999999999885 99999987532   11111    1112222222       1     124567899999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++|||||||+|||+.+++.+++. ++... +|+|||++||+++++..||++++|++|++++.|+++++.+.
T Consensus       144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  219 (229)
T 2pze_A          144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL  219 (229)
T ss_dssp             HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred             HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            99999999999999999999999999997 44443 48999999999999877999999999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=6e-50  Score=387.33  Aligned_cols=204  Identities=21%  Similarity=0.336  Sum_probs=172.5

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++|++++|++.++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             +||
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~   69 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA   69 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence            6999999999983226899999999999999999999999999999999999999999999987             399


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH---HHhHcCC-C-----CCCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKL-P-----NLERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~---ll~~l~L-~-----~~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |+||++.+ +.+||+||+.++...   ..+.. +++.+   +.+.+++ +     ..++++.+|||||||||+|||||+.
T Consensus        70 ~v~Q~~~~-~~~tv~enl~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~  144 (237)
T 2cbz_A           70 YVPQQAWI-QNDSLRENILFGCQL---EEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS  144 (237)
T ss_dssp             EECSSCCC-CSEEHHHHHHTTSCC---CTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             EEcCCCcC-CCcCHHHHhhCcccc---CHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence            99999875 578999999875432   11111 12222   1223333 1     1468899999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQ---VFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~---~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +|++|||||||+|||+.+++.+++.+.   .+ ++|+|||++||+++++..||++++|++|++++.|+++++.+.
T Consensus       145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  218 (237)
T 2cbz_A          145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR  218 (237)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence            999999999999999999999999973   33 358999999999999877999999999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=2.6e-48  Score=420.12  Aligned_cols=229  Identities=26%  Similarity=0.363  Sum_probs=191.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|+++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+....|++|
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence            47999999999965447899999999999999999999999999999999999999999999999998766656677899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCCC-CCCCCCCCChhHHHHHHHHHHhhc
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLPN-LERPVKYLSGGQKRRLSFTIAILH  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~~-~~~~~~~LSGGqkQRlsLA~ALl~  239 (457)
                      |||||++.+|+. ||+||+.++...  .+.++..+..+     +.++.+  ++.. .++++.+||||||||++|||||++
T Consensus       420 ~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~  496 (587)
T 3qf4_A          420 SAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK  496 (587)
T ss_dssp             EEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred             EEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence            999999999865 999999865321  22333222221     112222  2222 467889999999999999999999


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcCCcccHHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSD  319 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~  319 (457)
                      +|++||||||||+||+.+++.+++.++.+ .+|+|+|++||+++.+..||||++|++|++++.|+++++.++.  ....+
T Consensus       497 ~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~--~~~~~  573 (587)
T 3qf4_A          497 KPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC--KPYRE  573 (587)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHC--HHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCC--cHHHH
Confidence            99999999999999999999999998776 4589999999999999889999999999999999999998652  23444


Q ss_pred             HHH
Q psy10858        320 VFY  322 (457)
Q Consensus       320 ~f~  322 (457)
                      .|.
T Consensus       574 ~~~  576 (587)
T 3qf4_A          574 IYE  576 (587)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=3.2e-48  Score=418.59  Aligned_cols=217  Identities=18%  Similarity=0.282  Sum_probs=187.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|+++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+....++++
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            47999999999975335799999999999999999999999999999999999999999999999988665555667899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------------CCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------------LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------------~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+|+. ||+||+.++.. .+.+.    +++.++++.+++.+            .++...+||||||||++|||
T Consensus       420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr  493 (582)
T 3b5x_A          420 ALVSQNVHLFND-TIANNIAYAAE-GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR  493 (582)
T ss_pred             EEEcCCCccccc-cHHHHHhccCC-CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence            999999999875 99999987531 12232    23444555554421            34567899999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++|||||||||||+.+++.+++.++.+. +|+|+|++||+++.++.||||++|++|++++.|+++++.++
T Consensus       494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b5x_A          494 ALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ  568 (582)
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999987765 49999999999999988999999999999999999999764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=6.3e-48  Score=416.21  Aligned_cols=216  Identities=21%  Similarity=0.342  Sum_probs=185.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..++++|++++|++++..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....|++|
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            46999999999976446799999999999999999999999999999999999999999999999998766656677889


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-------C-----CCCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKL-------P-----NLERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-------~-----~~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+|+. ||+||+.++..  ..+.++    +.++++..++       +     ..++...+|||||||||+|||
T Consensus       418 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAr  490 (578)
T 4a82_A          418 GLVQQDNILFSD-TVKENILLGRP--TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR  490 (578)
T ss_dssp             EEECSSCCCCSS-BHHHHHGGGCS--SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred             EEEeCCCccCcc-cHHHHHhcCCC--CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHH
Confidence            999999999876 99999987532  122322    2233333322       1     134566799999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++|||||||||||+.+++.+++.++.+. +|+|+|++||+++.++.||||++|++|++++.|+++++.++
T Consensus       491 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~  565 (578)
T 4a82_A          491 IFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK  565 (578)
T ss_dssp             HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999987764 57999999999999988999999999999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.4e-47  Score=413.61  Aligned_cols=217  Identities=19%  Similarity=0.280  Sum_probs=187.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++|++++|+++++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....++++
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV  419 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence            47999999999974225799999999999999999999999999999999999999999999999998765555567789


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+|+. ||+||+.++.. .+.+++    ++.++++.+++.            ..++.+.+||||||||++|||
T Consensus       420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~----~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr  493 (582)
T 3b60_A          420 ALVSQNVHLFND-TVANNIAYART-EEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR  493 (582)
T ss_dssp             EEECSSCCCCSS-BHHHHHHTTTT-SCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred             eEEccCCcCCCC-CHHHHHhccCC-CCCCHH----HHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence            999999999875 99999987531 123332    344445554442            135677899999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++|||||||||||+.+++.+++.++.+.+ |+|+|++||+++.++.||||++|++|++++.|+++++.++
T Consensus       494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence            99999999999999999999999999999887754 9999999999999888999999999999999999999765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-47  Score=414.03  Aligned_cols=215  Identities=25%  Similarity=0.351  Sum_probs=185.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ..|+++|++++|++. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....|+++
T Consensus       353 ~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i  431 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI  431 (598)
T ss_dssp             CCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             CeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence            469999999999742 6799999999999999999999999999999999999999999999999998766666677899


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC------------CCCCCCCCChhHHHHHHHHH
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN------------LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~------------~~~~~~~LSGGqkQRlsLA~  235 (457)
                      ||+||++.+|+ .||+||+.++..  +.++++    +.++++..++..            .++...+||||||||++|||
T Consensus       432 ~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr  504 (598)
T 3qf4_B          432 GIVLQDTILFS-TTVKENLKYGNP--GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR  504 (598)
T ss_dssp             EEECTTCCCCS-SBHHHHHHSSST--TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred             EEEeCCCcccc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence            99999999986 599999987532  222222    333444444321            12334789999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      ||+++|++||||||||+||+.+++.+.+.++.+. +|+|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus       505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  579 (598)
T 3qf4_B          505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK  579 (598)
T ss_dssp             HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT
T ss_pred             HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999987764 59999999999999988999999999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.3e-46  Score=374.99  Aligned_cols=197  Identities=25%  Similarity=0.326  Sum_probs=153.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+++++|+++.  .  +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|             +
T Consensus        38 ~~~l~~~~l~~~--~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~  100 (290)
T 2bbs_A           38 DDSLSFSNFSLL--G--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R  100 (290)
T ss_dssp             --------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred             CceEEEEEEEEc--C--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence            357999999985  3  5689999999999999999999999999999999999999999999976             4


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC------------CCCCCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP------------NLERPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~------------~~~~~~~~LSGGqkQRlsLA  234 (457)
                      |||+||++.+|+. ||+||+. ...   .....    ..++++.+++.            ..++.+.+|||||||||+||
T Consensus       101 i~~v~Q~~~l~~~-tv~enl~-~~~---~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA  171 (290)
T 2bbs_A          101 ISFCSQNSWIMPG-TIKENII-GVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA  171 (290)
T ss_dssp             EEEECSSCCCCSS-BHHHHHH-TTC---CCHHH----HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred             EEEEeCCCccCcc-cHHHHhh-Ccc---cchHH----HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence            9999999998875 9999997 321   12211    12222222321            12445789999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      |||+++|++|||||||+|||+.+++.+++. ++.+. +|+|||++||+++++..||++++|++|++++.|+++++..
T Consensus       172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence            999999999999999999999999999997 44443 5899999999999987799999999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2.8e-44  Score=419.26  Aligned_cols=218  Identities=22%  Similarity=0.310  Sum_probs=189.2

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..|+++||+++|..+ +..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+....|++
T Consensus      1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            369999999999642 3579999999999999999999999999999999999999999999999999998888888999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-------CCC-CC----CCCCCCChhHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-------LPN-LE----RPVKYLSGGQKRRLSFT  234 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-------L~~-~~----~~~~~LSGGqkQRlsLA  234 (457)
                      ||||||++.||+. |++|||.|+......+++++.    ++++..+       |+. .|    ....+||||||||++||
T Consensus      1155 i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~----~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A         1155 IAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVE----EAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp             EEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHH----HHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred             eEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHH----HHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence            9999999999976 999999865332333444433    3333333       222 33    44567999999999999


Q ss_pred             HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        235 IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       235 ~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||+++|+|||||||||+||+.+.+.|.+.++.. .+|+|+|+++|.++.+..||||++|++|+|++.|+|++|+++
T Consensus      1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~-~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A         1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp             HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT-SSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC
T ss_pred             HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999998765 358999999999999999999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.9e-43  Score=411.26  Aligned_cols=223  Identities=20%  Similarity=0.296  Sum_probs=188.3

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..++++||+++|++. +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....|++
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence            469999999999752 2469999999999999999999999999999999999999999999999999887666677889


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHH--HhHc-CCCC-----CCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKY--SHVL-KLPN-----LERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~l--l~~l-~L~~-----~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ||||||++.+|+ .||+||+.++......+.++..+..+..  .+.. .++.     ......+|||||||||+|||||+
T Consensus      1109 i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A         1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp             CEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence            999999998875 6999999875433334444443333221  1111 1221     24456789999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ++|+||||||||+|||+.+++.+++.++.. .+|+|||++||+++++..||||++|++|+|++.|+++++.++.
T Consensus      1188 ~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A         1188 RQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp             HCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSC
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence            999999999999999999999999998775 4699999999999999889999999999999999999998763

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=4.6e-43  Score=408.16  Aligned_cols=220  Identities=22%  Similarity=0.272  Sum_probs=187.7

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..|+++|++++|++. +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....|++
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence            469999999999752 2579999999999999999999999999999999999999999999999999877666677889


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHcC--CC-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVLK--LP-NLERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l~--L~-~~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ||||||++.+|+. ||+||+.++..  ..+.++..+..+     +.++.+.  +. ..++...+|||||||||+|||||+
T Consensus       466 i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          466 IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             EEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            9999999999876 99999988643  233333333322     2222221  11 145677899999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      .+|+|||||||||+||+.+.+.+.+.++... +|+|+|++||+++.+..||+|++|++|+|++.|+++++.++
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~  614 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE  614 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999987754 59999999999999988999999999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.7e-43  Score=379.48  Aligned_cols=203  Identities=21%  Similarity=0.247  Sum_probs=178.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..+++++|+++.|++  . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+             ..+
T Consensus       355 ~~~l~~~~l~~~~~~--~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~  418 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS--F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLT  418 (607)
T ss_dssp             CEEEEECCEEEECSS--C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCC
T ss_pred             ceEEEEeceEEEecc--e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeE
Confidence            458999999999986  4 699999999999999999999999999999999999999999975             146


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHh-hhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFF-GMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~-~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      |||+||++.+++.+||.|++... ...+     ...+++.++++.+++.. .++++.+|||||||||+||+||+++|++|
T Consensus       419 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL  493 (607)
T 3bk7_A          419 VAYKPQYIKAEYEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY  493 (607)
T ss_dssp             EEEECSSCCCCCSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred             EEEEecCccCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            99999999888889999988654 1111     11345677889999964 78999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhh
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKS  310 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~  310 (457)
                      ||||||+|||+.++..++++++.+. +.|+|||+||||++++.. |||+++|++  |++.+.|+|+++.+
T Consensus       494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            9999999999999999999987764 569999999999999975 999999986  88889999988865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=7e-43  Score=374.50  Aligned_cols=204  Identities=21%  Similarity=0.258  Sum_probs=178.0

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++++++|+++.|++   ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+             ..+
T Consensus       285 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~  348 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLT  348 (538)
T ss_dssp             CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCC
T ss_pred             CeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------Cce
Confidence            457999999999986   4699999999999999999999999999999999999999999975             136


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |||+||++.+++.+||.|++...... +..   ..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus       349 i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl  424 (538)
T 1yqt_A          349 VAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL  424 (538)
T ss_dssp             EEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred             EEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            99999999887889999988653111 011   1245677888999854 789999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~  310 (457)
                      |||||+|||+.++..++++++.+. +.|.|||++|||++++.. ||||++|++  |++.+.|+|+++.+
T Consensus       425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            999999999999999999987765 469999999999999975 999999986  78999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2.2e-42  Score=403.29  Aligned_cols=219  Identities=22%  Similarity=0.323  Sum_probs=188.6

Q ss_pred             CceEEEeeEEEeCC-CCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELK-PSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~-~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..|+++|++++|.+ .+..+|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|.++...+....|++
T Consensus       414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~  493 (1321)
T 4f4c_A          414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN  493 (1321)
T ss_dssp             CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence            36999999999964 23689999999999999999999999999999999999999999999999999988887788899


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH-----HHhHcCCCC-----CCCCCCCCChhHHHHHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK-----YSHVLKLPN-----LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~-----ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      ||||+|++.+|.. ||+||+.|+..  ..+.++..+.++.     .++.  |+.     ......+||||||||++||||
T Consensus       494 i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~--lp~G~~T~vGe~G~~LSGGQkQRiaiARA  568 (1321)
T 4f4c_A          494 VAVVSQEPALFNC-TIEENISLGKE--GITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRGTQLSGGQKQRIAIARA  568 (1321)
T ss_dssp             EEEECSSCCCCSE-EHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHH--STTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred             ccccCCcceeeCC-chhHHHhhhcc--cchHHHHHHHHHHccchhHHHc--CCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence            9999999999865 99999987632  2334443333222     1222  222     245677899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ++++|+|||||||||+||+.+.+.+.+.++.+. +|+|+|++||++..+..||+|++|++|+|++.|+.++|.++.
T Consensus       569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~  643 (1321)
T 4f4c_A          569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ  643 (1321)
T ss_dssp             HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred             HccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence            999999999999999999999998888887764 589999999999999999999999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.8e-42  Score=369.85  Aligned_cols=206  Identities=18%  Similarity=0.185  Sum_probs=176.5

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++++++++++.|++   ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+++            ..
T Consensus       267 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~  331 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI  331 (538)
T ss_dssp             CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred             cceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence            467999999999986   468888999999999999999999999999999999999999998643            46


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      ++|+||+......+||.||+.+..... ...  ....+.++++.+++.. .++++.+|||||||||+|||||+++|++||
T Consensus       332 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl  408 (538)
T 3ozx_A          332 LSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV  408 (538)
T ss_dssp             EEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             eEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            899999987777899999998742211 111  1234677888888854 799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~  310 (457)
                      |||||+|||+.++..++++++.+. +.|+|||+||||++++.. ||||++|++  |.+...++|.++..
T Consensus       409 LDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~  477 (538)
T 3ozx_A          409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT  477 (538)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence            999999999999999999987765 469999999999999975 999999986  66777777776543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-40  Score=359.95  Aligned_cols=201  Identities=19%  Similarity=0.233  Sum_probs=170.7

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRR-----EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~G-----ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      ++++++|.+. ..+++++||++.+|     |++||+||||||||||+|+|+|+++|++|+.      +       .+..+
T Consensus       350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~-------~~~~i  415 (608)
T 3j16_B          350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I-------PKLNV  415 (608)
T ss_dssp             SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C-------CSCCE
T ss_pred             cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c-------cCCcE
Confidence            6677888752 46899999999999     7899999999999999999999999999962      1       12469


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      +|+||+.......||+|++...  ..+...  ....+.++++.+++.. +++++.+|||||||||+|||||+++|+||||
T Consensus       416 ~~~~q~~~~~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlL  491 (608)
T 3j16_B          416 SMKPQKIAPKFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLI  491 (608)
T ss_dssp             EEECSSCCCCCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             EEecccccccCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            9999998777778999987532  222111  1234567788899965 7999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeC--CeEEEecChhhhhhc
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYK--GRIIAQDSPDGFKSK  311 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~--GkI~~~gs~~~l~~~  311 (457)
                      ||||+|||+.++..++++++.+. +.|+|||++|||++++.. ||||++|++  |++++.|+|+++++.
T Consensus       492 DEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          492 DEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             CCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            99999999999999999987764 569999999999999975 999999996  999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=5e-41  Score=364.79  Aligned_cols=197  Identities=21%  Similarity=0.275  Sum_probs=163.6

Q ss_pred             ceEE--------EeeEEEeCCCCc-eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EE
Q psy10858         89 ADEG--------KNTEKEELKPSN-VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI---------WV  150 (457)
Q Consensus        89 ~Iei--------~nlsk~yg~~~~-~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I---------~i  150 (457)
                      +|++        +|++++|++  . .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++         .+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~  159 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF  159 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred             eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence            6888        899999987  5 5999999 999999999999999999999999999999999995         34


Q ss_pred             cCccCCCCch--hhhcCcEEEEcCCCCCCC---CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCC
Q psy10858        151 LGGHPASIYH--KTAGSKVGYMPQELAMFG---ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLS  224 (457)
Q Consensus       151 ~G~~~~~~~~--~~~r~~IGyvpQ~~~L~~---~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LS  224 (457)
                      .|.++.....  ...+..+++++|...+++   ..||.|++...    .     ..+++.++++.++|.. +++++.+||
T Consensus       160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~~~~~~~~~~LS  230 (607)
T 3bk7_A          160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELENVLDRELHQLS  230 (607)
T ss_dssp             TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCTTGGGSBGGGCC
T ss_pred             CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCCchhCCChhhCC
Confidence            4543321100  112356899999754322   23899998631    1     1234677889999965 799999999


Q ss_pred             hhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858        225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG  297 (457)
Q Consensus       225 GGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G  297 (457)
                      |||||||+||+||+++|++|||||||+|||+.++..++++++.+.++|+|||+||||++++.. ||||++|+++
T Consensus       231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            999999999999999999999999999999999999999988877779999999999999875 9999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=2.7e-40  Score=361.97  Aligned_cols=212  Identities=21%  Similarity=0.293  Sum_probs=147.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCCc-------eEEEEcCccC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLL---------------------KAIVGLKNISQ-------GEIWVLGGHP  155 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLL---------------------k~L~Gll~p~s-------G~I~i~G~~~  155 (457)
                      ..+|+||||+|++||++||+||||||||||+                     +++.|+..|+.       |.|.++|.+.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            6789999999999999999999999999998                     99999999984       4555555443


Q ss_pred             CCCchhhhcCcEEEEcCCCC-------------------CCCCCCHHHHHHHhhhhcC--CCHHH-------HHHHHHHH
Q psy10858        156 ASIYHKTAGSKVGYMPQELA-------------------MFGELTIKETLNFFGMIYG--MDESI-------WLFQMRKY  207 (457)
Q Consensus       156 ~~~~~~~~r~~IGyvpQ~~~-------------------L~~~lTV~EnL~~~~~l~g--~~~~~-------~~~~~~~l  207 (457)
                      ..    ..++.+||++|...                   .++.+||.||+.++..+..  .....       ..++ ..+
T Consensus       111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  185 (670)
T 3ux8_A          111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGF  185 (670)
T ss_dssp             --------CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHH
T ss_pred             hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHH
Confidence            21    12344555555433                   3467899999987543211  11100       1111 235


Q ss_pred             HhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q psy10858        208 SHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE  283 (457)
Q Consensus       208 l~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~  283 (457)
                      ++.++|..  +++++.+|||||||||+|||||+++|+  +|||||||+||||..++.++++++.++++|+|||+||||++
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  265 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  265 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            77888864  589999999999999999999999998  99999999999999999999998888878999999999999


Q ss_pred             HHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        284 EANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       284 ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      ++..||||++|      ++|++++.|+++++.+..  ..+...|.
T Consensus       266 ~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~--~~~~~~~~  308 (670)
T 3ux8_A          266 TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP--NSLTGQYL  308 (670)
T ss_dssp             HHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCT--TCHHHHHH
T ss_pred             HHhhCCEEEEecccccccCCEEEEecCHHHHhcCc--hhHHHHHh
Confidence            88779999999      899999999999987653  34555555

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=8.3e-41  Score=358.44  Aligned_cols=196  Identities=20%  Similarity=0.246  Sum_probs=160.0

Q ss_pred             eEE-EeeEEEeCCCCc-eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EEcCccCCCC
Q psy10858         90 DEG-KNTEKEELKPSN-VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI---------WVLGGHPASI  158 (457)
Q Consensus        90 Iei-~nlsk~yg~~~~-~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I---------~i~G~~~~~~  158 (457)
                      .++ +||+|+|++  . .+|++|| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++...
T Consensus        21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~   97 (538)
T 1yqt_A           21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY   97 (538)
T ss_dssp             ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred             hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence            444 699999987  5 5999999 999999999999999999999999999999999995         3445433210


Q ss_pred             ch--hhhcCcEEEEcCCCCCCCC---CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHH
Q psy10858        159 YH--KTAGSKVGYMPQELAMFGE---LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       159 ~~--~~~r~~IGyvpQ~~~L~~~---lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRls  232 (457)
                      ..  ...+..+++++|...+++.   .|+.|++...    .     ..+++.++++.+++.. .++++.+|||||||||+
T Consensus        98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~  168 (538)
T 1yqt_A           98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVA  168 (538)
T ss_dssp             HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHH
Confidence            00  1123468999998654432   3898887531    1     1234677899999965 78999999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG  297 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G  297 (457)
                      ||+||+.+|++|||||||++||+.+++.++++++.++++|+|||+||||++++.. ||||++|++|
T Consensus       169 iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            9999999999999999999999999999999988877789999999999999975 9999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1e-38  Score=360.30  Aligned_cols=196  Identities=18%  Similarity=0.234  Sum_probs=168.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .+...|++++|++  +.+|+|+||+|++||++||+||||||||||||+|+|      |+|  .|.+..    .  ..+++
T Consensus       435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~--~~~~~  498 (986)
T 2iw3_A          435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----E--ECRTV  498 (986)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----T--TSCEE
T ss_pred             eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----c--ceeEE
Confidence            5677799999998  899999999999999999999999999999999995      544  343321    1  13479


Q ss_pred             EEcCCC-CCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        169 YMPQEL-AMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       169 yvpQ~~-~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |++|+. .+++.+||.||+.+  ...+.     .+++.++++.+++. . .++++.+|||||||||+|||||+.+|++||
T Consensus       499 ~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL  571 (986)
T 2iw3_A          499 YVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL  571 (986)
T ss_dssp             ETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred             EEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999985 67889999999975  22232     45678889999995 3 689999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEE-EecChhhhhh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRII-AQDSPDGFKS  310 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~-~~gs~~~l~~  310 (457)
                      |||||+|||+.+++.++++++.   .|+|||++|||++++.. |||+++|++|+++ ..|+++++..
T Consensus       572 LDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          572 LDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             EECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            9999999999999999999876   58999999999999975 9999999999997 6899988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.9e-39  Score=366.27  Aligned_cols=204  Identities=22%  Similarity=0.263  Sum_probs=162.6

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      .++|+++|++++|++.++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.           .+
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~  737 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CR  737 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CC
T ss_pred             CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cc
Confidence            3589999999999753357999999999999999999999999999999999999999999999752           14


Q ss_pred             EEEEcCCCC----CCCCCCHHHHHHHhhh---------------------------------------------------
Q psy10858        167 VGYMPQELA----MFGELTIKETLNFFGM---------------------------------------------------  191 (457)
Q Consensus       167 IGyvpQ~~~----L~~~lTV~EnL~~~~~---------------------------------------------------  191 (457)
                      +||++|++.    ...+.|+.+++.+...                                                   
T Consensus       738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~  817 (986)
T 2iw3_A          738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY  817 (986)
T ss_dssp             EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred             eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence            777777642    1123466666543100                                                   


Q ss_pred             --------------------------------------------------hcCCCHHHHHHHHHHHHhHcCCCC---CCC
Q psy10858        192 --------------------------------------------------IYGMDESIWLFQMRKYSHVLKLPN---LER  218 (457)
Q Consensus       192 --------------------------------------------------l~g~~~~~~~~~~~~ll~~l~L~~---~~~  218 (457)
                                                                        ..+.......+++.++++.++|..   .++
T Consensus       818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~  897 (986)
T 2iw3_A          818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS  897 (986)
T ss_dssp             EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred             hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence                                                              000000011345778899999963   478


Q ss_pred             CCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCC
Q psy10858        219 PVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKG  297 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~G  297 (457)
                      ++.+|||||||||+|||||+++|+||||||||+|||+.++..+++.++..   |.|||++|||++++.. |||+++|++|
T Consensus       898 ~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G  974 (986)
T 2iw3_A          898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDG  974 (986)
T ss_dssp             CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred             CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            89999999999999999999999999999999999999999998887543   6799999999999965 9999999999


Q ss_pred             eEEEecC
Q psy10858        298 RIIAQDS  304 (457)
Q Consensus       298 kI~~~gs  304 (457)
                      +++..|+
T Consensus       975 ~Iv~~G~  981 (986)
T 2iw3_A          975 RMTPSGH  981 (986)
T ss_dssp             BCCC---
T ss_pred             EEEEeCC
Confidence            9987764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=5.7e-38  Score=343.64  Aligned_cols=201  Identities=24%  Similarity=0.374  Sum_probs=155.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------cCCCCCceEEEEcCccCCCCchh
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV----------------------GLKNISQGEIWVLGGHPASIYHK  161 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~----------------------Gll~p~sG~I~i~G~~~~~~~~~  161 (457)
                      ..+|+||||+|++||+++|+||||||||||+++|+                      |+..+ +|.|.++|.++......
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~  413 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS  413 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence            56899999999999999999999999999998754                      44444 46888888765421100


Q ss_pred             h-----------------------------------------hcCcEEEEcCCCCCCC----------------------
Q psy10858        162 T-----------------------------------------AGSKVGYMPQELAMFG----------------------  178 (457)
Q Consensus       162 ~-----------------------------------------~r~~IGyvpQ~~~L~~----------------------  178 (457)
                      .                                         .....|+++|+..+++                      
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (670)
T 3ux8_A          414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT  493 (670)
T ss_dssp             CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred             chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence            0                                         0012344544443322                      


Q ss_pred             ----------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC---ce
Q psy10858        179 ----------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP---QL  243 (457)
Q Consensus       179 ----------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P---~l  243 (457)
                                .+||.||+.++....      ..++..+.+..+++..  .++++.+|||||||||+|||||+++|   +|
T Consensus       494 ~~~~~~~~~~~ltv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l  567 (670)
T 3ux8_A          494 YKGKNIAEVLDMTVEDALDFFASIP------KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL  567 (670)
T ss_dssp             BTTBCHHHHHTSBHHHHHHHTTTCH------HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred             ecCCCHHHHhhCCHHHHHHHHHHhh------hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence                      479999998764321      1234456677888853  58999999999999999999999887   59


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~  311 (457)
                      |||||||+||||..+..++++++.++++|+|||+||||++++..||||++|      ++|+|++.|+++++.+.
T Consensus       568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~  641 (670)
T 3ux8_A          568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  641 (670)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence            999999999999999999999888877899999999999998779999999      89999999999999754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-37  Score=335.82  Aligned_cols=197  Identities=18%  Similarity=0.267  Sum_probs=149.9

Q ss_pred             eeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCccCCCCchhh
Q psy10858         94 NTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW-----------VLGGHPASIYHKT  162 (457)
Q Consensus        94 nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~-----------i~G~~~~~~~~~~  162 (457)
                      |++++|+.. ..+|++++ ++++||++||+||||||||||||+|+|+++|++|+|.           +.|..+.......
T Consensus        82 ~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~  159 (608)
T 3j16_B           82 HVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM  159 (608)
T ss_dssp             TEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred             CeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence            457888763 34677777 6999999999999999999999999999999999982           2232211100001


Q ss_pred             hcCc--EEEEcCCCCCC------CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHH
Q psy10858        163 AGSK--VGYMPQELAMF------GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       163 ~r~~--IGyvpQ~~~L~------~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsL  233 (457)
                      ....  ..+.+|.....      +..++.+++...   ..    ...+++.++++.+++.. .++++.+|||||||||+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i  232 (608)
T 3j16_B          160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR---ME----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI  232 (608)
T ss_dssp             HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH---CC----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred             HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh---hh----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence            1122  23444433211      123555555321   11    12345778899999965 799999999999999999


Q ss_pred             HHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeE
Q psy10858        234 TIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       234 A~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI  299 (457)
                      |+||+++|++|||||||+|||+..+..++++++.++++|+|||+|||+++++.. ||||++|++|..
T Consensus       233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred             HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence            999999999999999999999999999999998887889999999999999975 999999987653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.3e-36  Score=324.04  Aligned_cols=194  Identities=19%  Similarity=0.187  Sum_probs=148.9

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE-----------EEcCccCCCCchh
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-----------WVLGGHPASIYHK  161 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I-----------~i~G~~~~~~~~~  161 (457)
                      ++.+.+||.+.+ .|.++. .+++||++||+||||||||||||+|+|+++|++|+|           .+.|.++......
T Consensus         3 ~~~~~~~~~~~f-~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~   80 (538)
T 3ozx_A            3 GEVIHRYKVNGF-KLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE   80 (538)
T ss_dssp             CCEEEESSTTSC-EEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred             CCCceecCCCce-eecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence            357889997432 333333 245999999999999999999999999999999998           5666554211001


Q ss_pred             --hhcCcEEEEcCCCCCC---CCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHH
Q psy10858        162 --TAGSKVGYMPQELAMF---GELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       162 --~~r~~IGyvpQ~~~L~---~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~  235 (457)
                        .....+...+|.....   ...++.+++...         ...++++++++.+++.. .++++.+|||||||||+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~  151 (538)
T 3ozx_A           81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAA  151 (538)
T ss_dssp             HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred             HhhcccchhhccchhhhhhhhccCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence              1122355555554322   234788766421         11224567788999954 79999999999999999999


Q ss_pred             HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCe
Q psy10858        236 AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGR  298 (457)
Q Consensus       236 ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~Gk  298 (457)
                      ||+.+|++|||||||++||+..+..++++++.+++ |+|||+||||++++.. ||+|++|++|.
T Consensus       152 aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          152 SLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            99999999999999999999999999999888765 9999999999999975 99999998754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=2.4e-35  Score=331.20  Aligned_cols=211  Identities=23%  Similarity=0.328  Sum_probs=167.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCce-------------
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV-GLK-------NISQG-------------  146 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll-------~p~sG-------------  146 (457)
                      ..+++++++.       .+|+||||+|++||++||+|+||||||||+++|. |.+       .+..|             
T Consensus       628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~  700 (972)
T 2r6f_A          628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK  700 (972)
T ss_dssp             CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred             eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence            5799999862       3599999999999999999999999999999854 221       12233             


Q ss_pred             EEEEcCccCCCCch---h-------h---------hcCcEEEEcCCCCCCC-----------------------------
Q psy10858        147 EIWVLGGHPASIYH---K-------T---------AGSKVGYMPQELAMFG-----------------------------  178 (457)
Q Consensus       147 ~I~i~G~~~~~~~~---~-------~---------~r~~IGyvpQ~~~L~~-----------------------------  178 (457)
                      .|.++|.++.....   .       .         ..+.+||++|.+++..                             
T Consensus       701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce  780 (972)
T 2r6f_A          701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE  780 (972)
T ss_dssp             EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred             EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence            47788776642110   0       0         0134688888655421                             


Q ss_pred             -------------------------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHH
Q psy10858        179 -------------------------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRL  231 (457)
Q Consensus       179 -------------------------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRl  231 (457)
                                               .+||.|++.|+...    ..  ..+..++++.++|..  +++++.+|||||||||
T Consensus       781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----~~--~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv  854 (972)
T 2r6f_A          781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----PK--IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRV  854 (972)
T ss_dssp             TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----HH--HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred             ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----hh--HHHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence                                     35788888765432    11  223467889999954  6899999999999999


Q ss_pred             HHHHHhhcCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEe
Q psy10858        232 SFTIAILHKP---QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQ  302 (457)
Q Consensus       232 sLA~ALl~~P---~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~  302 (457)
                      +||+||+++|   +||||||||+|||+..++.++++++.++++|.|||++|||++++..||||++|      ++|+|++.
T Consensus       855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~  934 (972)
T 2r6f_A          855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV  934 (972)
T ss_dssp             HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence            9999999875   99999999999999999999999888888899999999999998779999999      79999999


Q ss_pred             cChhhhhhc
Q psy10858        303 DSPDGFKSK  311 (457)
Q Consensus       303 gs~~~l~~~  311 (457)
                      |+++++...
T Consensus       935 g~~~el~~~  943 (972)
T 2r6f_A          935 GTPEEVAEV  943 (972)
T ss_dssp             ESHHHHHTC
T ss_pred             cCHHHHHhC
Confidence            999999764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=2.2e-35  Score=329.85  Aligned_cols=212  Identities=23%  Similarity=0.297  Sum_probs=163.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC---------------
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA-IVGLK-------NI---------------  143 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~-L~Gll-------~p---------------  143 (457)
                      ...|+++|+++  .     +|+||||+|++||++||+|+||||||||+++ |+|++       +|               
T Consensus       500 ~~~L~v~~l~~--~-----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~  572 (842)
T 2vf7_A          500 AGWLELNGVTR--N-----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG  572 (842)
T ss_dssp             SCEEEEEEEEE--T-----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred             CceEEEEeeee--c-----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence            35799999975  1     4999999999999999999999999999997 77553       23               


Q ss_pred             ---Cce-------EEEEcCccCCCCchh----------hh---------cCcEEEEcCCCCC------------------
Q psy10858        144 ---SQG-------EIWVLGGHPASIYHK----------TA---------GSKVGYMPQELAM------------------  176 (457)
Q Consensus       144 ---~sG-------~I~i~G~~~~~~~~~----------~~---------r~~IGyvpQ~~~L------------------  176 (457)
                         .+|       .|.++|.++......          ..         .+.+||.++.+++                  
T Consensus       573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~  652 (842)
T 2vf7_A          573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV  652 (842)
T ss_dssp             CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred             cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence               467       688888766432110          00         0122343332211                  


Q ss_pred             ----C------------------------CC--------CCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCC
Q psy10858        177 ----F------------------------GE--------LTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LER  218 (457)
Q Consensus       177 ----~------------------------~~--------lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~  218 (457)
                          +                        ..        +|+.|++.++..    ..  ..+++.++++.++|..  +++
T Consensus       653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~----~~--~~~~~~~~L~~~gL~~~~l~~  726 (842)
T 2vf7_A          653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD----ES--AIFRALDTLREVGLGYLRLGQ  726 (842)
T ss_dssp             TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT----SH--HHHHHHHHHHHTTCTTSBTTC
T ss_pred             hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc----ch--HHHHHHHHHHHcCCCcccccC
Confidence                1                        12        345555444321    11  1246778899999964  589


Q ss_pred             CCCCCChhHHHHHHHHHHhhcC---CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE-
Q psy10858        219 PVKYLSGGQKRRLSFTIAILHK---PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL-  294 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~ALl~~---P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im-  294 (457)
                      ++.+|||||||||+||+||+++   |+||||||||+|||+..++.++++++.++++|.|||++|||++++..||||++| 
T Consensus       727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~  806 (842)
T 2vf7_A          727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG  806 (842)
T ss_dssp             CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred             CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence            9999999999999999999996   799999999999999999999999888888899999999999999679999999 


Q ss_pred             -----eCCeEEEecChhhhhhc
Q psy10858        295 -----YKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       295 -----~~GkI~~~gs~~~l~~~  311 (457)
                           ++|+|++.|+++++.+.
T Consensus       807 p~~g~~~G~Iv~~g~~~el~~~  828 (842)
T 2vf7_A          807 PGAGEDGGRLVAQGTPAEVAQA  828 (842)
T ss_dssp             SSSGGGCCSEEEEECHHHHTTC
T ss_pred             CCCCCCCCEEEEEcCHHHHHhC
Confidence                 79999999999998765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=6.1e-34  Score=320.50  Aligned_cols=211  Identities=24%  Similarity=0.356  Sum_probs=163.4

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCCc------e------EEEEcCccCCCCch--
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLL---------KAIVGLKNISQ------G------EIWVLGGHPASIYH--  160 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLL---------k~L~Gll~p~s------G------~I~i~G~~~~~~~~--  160 (457)
                      ..+|+||||+|++|+++||+|+||||||||+         +++.|...+..      |      .+.++..++.....  
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~  676 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN  676 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence            3469999999999999999999999999997         45555443332      2      24444333321100  


Q ss_pred             ---------------------------------------hhhcCcEEEEcCCCCCCC-----------------------
Q psy10858        161 ---------------------------------------KTAGSKVGYMPQELAMFG-----------------------  178 (457)
Q Consensus       161 ---------------------------------------~~~r~~IGyvpQ~~~L~~-----------------------  178 (457)
                                                             -......||++|+..+++                       
T Consensus       677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~  756 (916)
T 3pih_A          677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY  756 (916)
T ss_dssp             HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred             ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence                                                   001134678888776654                       


Q ss_pred             ---------CCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC---ceE
Q psy10858        179 ---------ELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP---QLI  244 (457)
Q Consensus       179 ---------~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P---~lL  244 (457)
                               .+||.|++.|+....      ...+..++++.++|..  +++++.+|||||||||+|||||+++|   +||
T Consensus       757 ~g~~i~~vl~~tv~eal~f~~~~~------~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL  830 (916)
T 3pih_A          757 KGKNISDILDMTVDEALEFFKNIP------SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY  830 (916)
T ss_dssp             TTBCHHHHHSSBHHHHHHHTTTCH------HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred             ccCCHHHHhhCCHHHHHHHHhcch------hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence                     368888888764321      2345667889999953  68999999999999999999999875   799


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHH
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLS  318 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~  318 (457)
                      ||||||+|||+..++.++++++.++++|.|||+||||++++..||+|++|      ++|+|++.|+|+++.+..  ....
T Consensus       831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~--~syt  908 (916)
T 3pih_A          831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP--HSYT  908 (916)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT--TCHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC--chHH
Confidence            99999999999999999999888888899999999999999889999999      899999999999998753  3344


Q ss_pred             HHHH
Q psy10858        319 DVFY  322 (457)
Q Consensus       319 ~~f~  322 (457)
                      ..|+
T Consensus       909 ~~~l  912 (916)
T 3pih_A          909 GRFL  912 (916)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-38  Score=328.97  Aligned_cols=196  Identities=12%  Similarity=0.075  Sum_probs=161.5

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-E-EEEcCccCCCCchhhhc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-E-IWVLGGHPASIYHKTAG  164 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~-I~i~G~~~~~~~~~~~r  164 (457)
                      .++++++|++++|+        ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.         .+
T Consensus       116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~  178 (460)
T 2npi_A          116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQ  178 (460)
T ss_dssp             CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TT
T ss_pred             cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------cc
Confidence            46899999999986        69999999999999999999999999999999999999 9 999872         24


Q ss_pred             CcEEEEcCCCC---CCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH--hh
Q psy10858        165 SKVGYMPQELA---MFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA--IL  238 (457)
Q Consensus       165 ~~IGyvpQ~~~---L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A--Ll  238 (457)
                      +.++|+||+..   ++..+|++||+ ++... .+...   .+++..+++.+++..... +.+|||||||||++|||  |+
T Consensus       179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~  253 (460)
T 2npi_A          179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLH  253 (460)
T ss_dssp             SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeeccchhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhc
Confidence            67999999985   34567999998 65432 22111   123445677778755322 88999999999999999  99


Q ss_pred             cCCce----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh------HHhc-cCe-----EEEEe-CCeEE
Q psy10858        239 HKPQL----IILDE-PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE------EAND-ASE-----VAFLY-KGRII  300 (457)
Q Consensus       239 ~~P~l----LILDE-PTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~------ea~~-~dr-----i~im~-~GkI~  300 (457)
                      .+|++    ||||| ||++||+. ++.++++++.   .|+|+|++||+.+      ++.. |||     |++|+ +|+++
T Consensus       254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv  329 (460)
T 2npi_A          254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS  329 (460)
T ss_dssp             HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred             cCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence            99999    99999 99999999 6666666543   4789999999988      7754 899     99999 99999


Q ss_pred             EecChhhhh
Q psy10858        301 AQDSPDGFK  309 (457)
Q Consensus       301 ~~gs~~~l~  309 (457)
                       .|+++++.
T Consensus       330 -~g~~~~~~  337 (460)
T 2npi_A          330 -AVDDVYKR  337 (460)
T ss_dssp             -CCCHHHHH
T ss_pred             -ECCHHHHh
Confidence             99998874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=6.8e-33  Score=284.60  Aligned_cols=197  Identities=15%  Similarity=0.149  Sum_probs=147.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCc
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN--------------------------------------ISQ  145 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~--------------------------------------p~s  145 (457)
                      +.++++++|++.+| +++|+|||||||||||++|.++..                                      +.+
T Consensus        48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~  126 (415)
T 4aby_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR  126 (415)
T ss_dssp             ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred             ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence            45699999999999 999999999999999999987764                                      457


Q ss_pred             eEEEEcCccCCCCchhhh-cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-----------------------------
Q psy10858        146 GEIWVLGGHPASIYHKTA-GSKVGYMPQELAMFGELTIKETLNFFGMIYGM-----------------------------  195 (457)
Q Consensus       146 G~I~i~G~~~~~~~~~~~-r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-----------------------------  195 (457)
                      |+++++|+++........ +..+++++|+..++.. +..++..+.-.....                             
T Consensus       127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~  205 (415)
T 4aby_A          127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK  205 (415)
T ss_dssp             EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            899999988753222222 3458999999876543 554444332111000                             


Q ss_pred             -C------------------------------HHHHHHHHHHHHhHcCCCCC----------------------------
Q psy10858        196 -D------------------------------ESIWLFQMRKYSHVLKLPNL----------------------------  216 (457)
Q Consensus       196 -~------------------------------~~~~~~~~~~ll~~l~L~~~----------------------------  216 (457)
                       .                              .......+.+.++.++++..                            
T Consensus       206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  285 (415)
T 4aby_A          206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP  285 (415)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence             0                              00112233444555544210                            


Q ss_pred             ---CCCCCC-CChhHHHHHHHHHHhhcCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        217 ---ERPVKY-LSGGQKRRLSFTIAILHKP--QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       217 ---~~~~~~-LSGGqkQRlsLA~ALl~~P--~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                         .+++.. |||||||||+||++|+.+|  ++|||||||+|||+..+..++++++.+. +|.|||+|||+++.+..|||
T Consensus       286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~  364 (415)
T 4aby_A          286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHH  364 (415)
T ss_dssp             SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSE
T ss_pred             CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCe
Confidence               033333 5999999999999999999  9999999999999999999999988876 59999999999988877999


Q ss_pred             EEEE----eCCeEEEec
Q psy10858        291 VAFL----YKGRIIAQD  303 (457)
Q Consensus       291 i~im----~~GkI~~~g  303 (457)
                      +++|    ++|+++...
T Consensus       365 i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          365 HYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEeccCCceEEEE
Confidence            9999    999987653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=4.8e-30  Score=262.47  Aligned_cols=85  Identities=19%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             CCCCCCCChhHHHHHHHHHHhh------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        217 ERPVKYLSGGQKRRLSFTIAIL------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       217 ~~~~~~LSGGqkQRlsLA~ALl------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                      ++++.+|||||||||+||+||+      ++|++|||||||+||||..++.++++++.+.+.|.|||+|||+++++..|||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~  353 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR  353 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence            5788999999999999999999      7999999999999999999999999988887789999999999999777999


Q ss_pred             EEEEeCCeEEE
Q psy10858        291 VAFLYKGRIIA  301 (457)
Q Consensus       291 i~im~~GkI~~  301 (457)
                      +++|++|++++
T Consensus       354 ~~~l~~G~i~~  364 (365)
T 3qf7_A          354 KLRITGGVVVN  364 (365)
T ss_dssp             EEEEETTEEC-
T ss_pred             EEEEECCEEEe
Confidence            99999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=1.5e-33  Score=267.91  Aligned_cols=151  Identities=19%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             EEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCC
Q psy10858         97 KEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAM  176 (457)
Q Consensus        97 k~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L  176 (457)
                      |+|++  +.+|+||    ++||+++|+||||||||||+|+|+|+ +|++|+|..  .++.. .....++.+||+||++  
T Consensus         8 k~~g~--~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~--   75 (208)
T 3b85_A            8 KTLGQ--KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL--   75 (208)
T ss_dssp             CSHHH--HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC----
T ss_pred             CCHhH--HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH--
Confidence            34665  7799996    89999999999999999999999999 999999943  22211 1112457899999986  


Q ss_pred             CCCCCHHHHH-HHhh----hhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858        177 FGELTIKETL-NFFG----MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV  251 (457)
Q Consensus       177 ~~~lTV~EnL-~~~~----~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs  251 (457)
                            +||+ .+..    .+.+...   .+++.++++. ++            ||||||+|||||+++|++|||||||+
T Consensus        76 ------~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~lllLDEPts  133 (208)
T 3b85_A           76 ------NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFVILDEAQN  133 (208)
T ss_dssp             ----------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred             ------HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                  3444 2211    1111110   1234444443 22            99999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc
Q psy10858        252 GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND  287 (457)
Q Consensus       252 GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~  287 (457)
                      |    +++.++++++.+ ++|+||| +|||+++++.
T Consensus       134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          134 T----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             C----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred             c----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence            9    899999998777 6799999 9999987764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.96  E-value=1.9e-30  Score=237.36  Aligned_cols=151  Identities=14%  Similarity=0.113  Sum_probs=105.6

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC-CCCCHHHHHH
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF-GELTIKETLN  187 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~-~~lTV~EnL~  187 (457)
                      ||||+|++||+++|+||||||||||+|++.+      |...+.+        ...   .|+++|++.-. ..-++++.+.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~--------d~~---~g~~~~~~~~~~~~~~~~~~~~   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISS--------DFC---RGLMSDDENDQTVTGAAFDVLH   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEH--------HHH---HHHHCSSTTCGGGHHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEcc--------HHH---HHHhcCcccchhhHHHHHHHHH
Confidence            6899999999999999999999999998653      2111211        111   26777765311 0011222221


Q ss_pred             HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH-----------
Q psy10858        188 FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-----------  256 (457)
Q Consensus       188 ~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~-----------  256 (457)
                                    ......+ ..+...........|||||||++||+|++.+|++|+|||||++||+.           
T Consensus        64 --------------~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~  128 (171)
T 4gp7_A           64 --------------YIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE  128 (171)
T ss_dssp             --------------HHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred             --------------HHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence                          1111111 23332221234556999999999999999999999999999999999           


Q ss_pred             -----HHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858        257 -----VRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV  291 (457)
Q Consensus       257 -----~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri  291 (457)
                           .++.+++.++.++++|.|+|++|||++++..++++
T Consensus       129 ~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~  168 (171)
T 4gp7_A          129 YVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE  168 (171)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred             HHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence                 66888988766666699999999999999876554

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=4e-29  Score=250.63  Aligned_cols=189  Identities=15%  Similarity=0.164  Sum_probs=126.0

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----------------------------------------------
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-----------------------------------------------  141 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-----------------------------------------------  141 (457)
                      +++|++.+| +.+|+||||||||||+++|..++                                               
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r   95 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR   95 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence            578899999 99999999999999999999554                                               


Q ss_pred             ---CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh------------hcCC-CHHHHHH---
Q psy10858        142 ---NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM------------IYGM-DESIWLF---  202 (457)
Q Consensus       142 ---~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~------------l~g~-~~~~~~~---  202 (457)
                         .+.+|.++++|.+............+|+.||+..++..-++.+++.....            +... ..+.+.+   
T Consensus        96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~  175 (322)
T 1e69_A           96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN  175 (322)
T ss_dssp             EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred             EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence               23357888888765322222333456666665554432233333211000            0000 0000111   


Q ss_pred             ------------------HHHHHHhH-cCC----CC-CCCCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCC
Q psy10858        203 ------------------QMRKYSHV-LKL----PN-LERPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVD  254 (457)
Q Consensus       203 ------------------~~~~ll~~-l~L----~~-~~~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLD  254 (457)
                                        +...+++. +++    +. .++++.+||||||||++||+||+    .+|++|||||||++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD  255 (322)
T 1e69_A          176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD  255 (322)
T ss_dssp             HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred             HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence                              11112221 111    12 46778999999999999999997    6899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE--EEEeCCeE
Q psy10858        255 PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV--AFLYKGRI  299 (457)
Q Consensus       255 p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri--~im~~GkI  299 (457)
                      +..++.++++++.+ .+|.|||+|||+++....||++  ++|.+|..
T Consensus       256 ~~~~~~l~~~l~~~-~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s  301 (322)
T 1e69_A          256 DYNAERFKRLLKEN-SKHTQFIVITHNKIVMEAADLLHGVTMVNGVS  301 (322)
T ss_dssp             HHHHHHHHHHHHHH-TTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred             HHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence            99999999998876 4589999999997656679986  78888764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.95  E-value=6.2e-32  Score=253.58  Aligned_cols=175  Identities=12%  Similarity=0.041  Sum_probs=124.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..+++|  .+|++||+++|+||||||||||+|+|+|+++.    |.+.+...........++.+||+||++.+|+.+|+.
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence            567888  79999999999999999999999999999963    444332111111112346799999999888888888


Q ss_pred             HHHHHh----h--hhcCCCHHHHHHHHHHH------HhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCC
Q psy10858        184 ETLNFF----G--MIYGMDESIWLFQMRKY------SHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPC  250 (457)
Q Consensus       184 EnL~~~----~--~l~g~~~~~~~~~~~~l------l~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPT  250 (457)
                      +++..+    .  ..++.+.++..+++.+.      ++.+++.. .++++.+||           ||+.+|++++|||||
T Consensus        83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~  151 (207)
T 1znw_A           83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL  151 (207)
T ss_dssp             TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred             CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence            876432    2  34566666666666665      44555532 466778888           999999999999999


Q ss_pred             CCC----CHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe
Q psy10858        251 VGV----DPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY  295 (457)
Q Consensus       251 sGL----Dp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~  295 (457)
                      +|+    |+..++.++++++.+. +.|.|||++|||++++.. ||||++|.
T Consensus       152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            998    8899999999977765 458999999999999975 99999884

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.94  E-value=4.9e-31  Score=274.43  Aligned_cols=175  Identities=11%  Similarity=0.076  Sum_probs=141.2

Q ss_pred             ceeEeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhh
Q psy10858        104 NVVLNNCSLVVKRRE--------------------FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus       104 ~~aL~~vs~~I~~Ge--------------------i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      +.+|++|||+|++|+                    ++||+||||||||||+|+|+|+.+|++|+|.++|.+..       
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence            568999999999999                    99999999999999999999999999999999876432       


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChh--HHHHHHHHHHhhc--
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG--QKRRLSFTIAILH--  239 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGG--qkQRlsLA~ALl~--  239 (457)
                      +  .+|++|++ .++.+|+.|++.++..         ..++.++++.+++...+..+. ||+|  ||||++||+||++  
T Consensus       109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~  175 (413)
T 1tq4_A          109 M--ERHPYKHP-NIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMK  175 (413)
T ss_dssp             C--CCEEEECS-SCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTT
T ss_pred             e--eEEecccc-ccCCeeehHhhcccch---------HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcC
Confidence            1  27899985 5778899988755421         123567788888865444444 9999  9999999999999  


Q ss_pred             --------CCceEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CcEEEEEcCChhH--Hhc-cCeEE-EEeCCe
Q psy10858        240 --------KPQLIILDEPCVGVDPLVRKRMWDLLQVFV-----GK----GRTVIMTTQYIEE--AND-ASEVA-FLYKGR  298 (457)
Q Consensus       240 --------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-----~~----g~TIIisTH~~~e--a~~-~dri~-im~~Gk  298 (457)
                              +|++++|||||+||||..++++++.++.+.     +.    ..+|+++||++++  ++. ||++. .|..|+
T Consensus       176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence                    999999999999999999999999976653     33    3678999999987  665 78764 444443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.94  E-value=1.5e-28  Score=227.73  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=106.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES  198 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~  198 (457)
                      .++|+||||||||||+|+|+|++.     |.++|...........++++||++|+.      ++.+++  .+.+ +... 
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~--~~~~-~~~~-   66 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI--FSSK-FFTS-   66 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE--EEET-TCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH--HHhh-cCCc-
Confidence            589999999999999999999985     445554431111012356899999986      222222  1111 1000 


Q ss_pred             HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHH-----hhcCCceEEEeC--CCCCCCHHHHHHHHHHHHHHHhC
Q psy10858        199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIA-----ILHKPQLIILDE--PCVGVDPLVRKRMWDLLQVFVGK  271 (457)
Q Consensus       199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~A-----Ll~~P~lLILDE--PTsGLDp~~r~~i~~~i~~~~~~  271 (457)
                                    -...++++.+||||||||++||+|     |+.+|++|||||  ||++||+..++.++++++.   .
T Consensus        67 --------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~  129 (178)
T 1ye8_A           67 --------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---P  129 (178)
T ss_dssp             --------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---T
T ss_pred             --------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---C
Confidence                          012577889999999999999996     999999999999  9999999999999988754   5


Q ss_pred             CcEEEEEc---CChhHHhc-cCeEEEEeCCeEEE
Q psy10858        272 GRTVIMTT---QYIEEAND-ASEVAFLYKGRIIA  301 (457)
Q Consensus       272 g~TIIisT---H~~~ea~~-~dri~im~~GkI~~  301 (457)
                      +.|+|++|   |++++++. |+|    .+|+++.
T Consensus       130 ~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          130 NVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             TSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             CCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            77788888   58888875 787    4566655

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.93  E-value=6.9e-31  Score=263.44  Aligned_cols=162  Identities=12%  Similarity=0.151  Sum_probs=127.8

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++||+++|+   ..+|+++||+|++|++++|+||||||||||+++|+|++   +|+|.                  +
T Consensus       101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------~  156 (305)
T 2v9p_A          101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------S  156 (305)
T ss_dssp             HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------------C
T ss_pred             eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE------------------E
Confidence            588999999997   46899999999999999999999999999999999999   79884                  3


Q ss_pred             EEcCCCCCCCCCCHHH-HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEE
Q psy10858        169 YMPQELAMFGELTIKE-TLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~E-nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL  246 (457)
                      |++|++.+|.. |+++ |+.+...   .+.     .+.+.++.+ |+. ++  +.+||||||||   ||||+.+|+||| 
T Consensus       157 ~v~q~~~lf~~-ti~~~ni~~~~~---~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl-  220 (305)
T 2v9p_A          157 FANHKSHFWLA-SLADTRAALVDD---ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV-  220 (305)
T ss_dssp             GGGTTSGGGGG-GGTTCSCEEEEE---ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred             EecCccccccc-cHHHHhhccCcc---ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence            45666666653 6665 6654311   111     223334432 332 34  78999999999   999999999999 


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhh
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l  308 (457)
                         ||+||+.+++.++.              .||+++.+..||+| +|++|++++.|+++++
T Consensus       221 ---Ts~LD~~~~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          221 ---TSNIDVQAEDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             ---EESSCSTTCGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred             ---ECCCCHHHHHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence               99999999988762              19999888789999 9999999999999987

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.93  E-value=1.9e-29  Score=264.33  Aligned_cols=198  Identities=13%  Similarity=0.093  Sum_probs=159.9

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc---cCCCC-----
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG---HPASI-----  158 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~---~~~~~-----  158 (457)
                      .++++++++++.|+.+ ..||+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.+.|+   ++...     
T Consensus       129 ~~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~  206 (438)
T 2dpy_A          129 FNPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL  206 (438)
T ss_dssp             CCTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred             CCceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence            3579999999999732 6799999 999999999999999999999999999999999999999997   33221     


Q ss_pred             chhhhcCcEEEEcCC-CCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh
Q psy10858        159 YHKTAGSKVGYMPQE-LAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       159 ~~~~~r~~IGyvpQ~-~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      .....++.++|++|+ ..+++.+|+.+|+.+.+..++...       ..++..     ++ .+..||+|| |||+||   
T Consensus       207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------~~v~~~-----ld-~l~~lS~g~-qrvslA---  269 (438)
T 2dpy_A          207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------QHVLLI-----MD-SLTRYAMAQ-REIALA---  269 (438)
T ss_dssp             HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------CEEEEE-----EE-CHHHHHHHH-HHHHHH---
T ss_pred             cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCHHHH-----HH-hHHHHHHHH-HHHHHH---
Confidence            112356789999995 566778899999987665432100       001111     12 267799999 999999   


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEcCChhHHhccCeEEEEeCCeEEEecChhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG---K-GR-----TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~---~-g~-----TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l  308 (457)
                      +.+|++      |+||||..+..++++++.+.+   + |.     ||+++|||++ ...||++++|.+|+|+.+++++++
T Consensus       270 l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          270 IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred             hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHc
Confidence            889998      999999999999999877655   3 74     9999999999 555999999999999999998887


Q ss_pred             hh
Q psy10858        309 KS  310 (457)
Q Consensus       309 ~~  310 (457)
                      ..
T Consensus       343 ~~  344 (438)
T 2dpy_A          343 GH  344 (438)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.93  E-value=6.2e-28  Score=241.36  Aligned_cols=184  Identities=14%  Similarity=0.116  Sum_probs=139.1

Q ss_pred             eEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh--hcCcEE
Q psy10858         95 TEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT--AGSKVG  168 (457)
Q Consensus        95 lsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~--~r~~IG  168 (457)
                      +.+.++.  ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....    ..  .+..|+
T Consensus        80 l~~~l~~--~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~  157 (302)
T 3b9q_A           80 VLEMLAK--KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE  157 (302)
T ss_dssp             HHHHHCC----CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHhCC--cccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce
Confidence            3344444  334568999999999999999999999999999999999999999999988754210    11  134699


Q ss_pred             EEcCCCC-CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc--eE
Q psy10858        169 YMPQELA-MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ--LI  244 (457)
Q Consensus       169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~--lL  244 (457)
                      |++|++. +++.+|++|++.+... .+..        ..+++.+++.+ .++++.+||   |||++||+||+++|+  +|
T Consensus       158 ~v~q~~~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL  225 (302)
T 3b9q_A          158 IVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL  225 (302)
T ss_dssp             EECCC--CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred             EEEecCCccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE
Confidence            9999998 8888999999986432 2211        12355666643 467788999   999999999999999  99


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcC---------ChhHHhc-cCeEEEEeCCeE
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQ---------YIEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH---------~~~ea~~-~dri~im~~GkI  299 (457)
                      +|| ||+|||+..+.      +.+. +.|.|+|++||         .++.+.. .+.|.++..|+.
T Consensus       226 vLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          226 VLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             EEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             EEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            999 99999998653      2222 45899999999         3344433 578999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.91  E-value=1.8e-29  Score=239.86  Aligned_cols=177  Identities=12%  Similarity=0.081  Sum_probs=114.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch-hhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH-KTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~-~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ...|+||||+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.+...... ...+..++|+||++.+|+.++.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence            34699999999999999999999999999999999999 5  99999 876543211 1234679999999877665431


Q ss_pred             -HHHHH---HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHH-----HHHhhcCCceEEEeCCCCCC
Q psy10858        183 -KETLN---FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF-----TIAILHKPQLIILDEPCVGV  253 (457)
Q Consensus       183 -~EnL~---~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsL-----A~ALl~~P~lLILDEPTsGL  253 (457)
                       .+++.   +....+|.+..    .++++++...+...+   .+|||||+||+++     |++++..|++++|||||+++
T Consensus        86 ~~~~l~~~~~~~~~~g~~~~----~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~  158 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYGTLKS----EYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR  158 (218)
T ss_dssp             TTCEEEEEEETTEEEEEEHH----HHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred             ccchhhhhhcccccCCCcHH----HHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence             12221   22233444433    234444433321122   5799999999999     89999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh-------CCcEEEEEcCChhHHhc-cCeE
Q psy10858        254 DPLVRKRMWDLLQVFVG-------KGRTVIMTTQYIEEAND-ASEV  291 (457)
Q Consensus       254 Dp~~r~~i~~~i~~~~~-------~g~TIIisTH~~~ea~~-~dri  291 (457)
                      |......+.+.+....+       .+.+.|+++|+++++.. ++++
T Consensus       159 d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i  204 (218)
T 1z6g_A          159 NTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY  204 (218)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence            99888888877655432       34556666677666532 4443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.91  E-value=2.3e-26  Score=235.40  Aligned_cols=174  Identities=14%  Similarity=0.136  Sum_probs=136.4

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh--hcCcEEEEcCCCC-CCCCC
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT--AGSKVGYMPQELA-MFGEL  180 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~--~r~~IGyvpQ~~~-L~~~l  180 (457)
                      +.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....    ..  .+..|+|++|++. +++.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            57899999999999999999999999999999999999999999988754210    11  2357999999998 88889


Q ss_pred             CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCCCHHH
Q psy10858        181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLV  257 (457)
Q Consensus       181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGLDp~~  257 (457)
                      |+++++.+... .+..        ..+++.+++.+ .++++.+||   |||++|||||+++|+  +|+|| ||+|+|+..
T Consensus       228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~  294 (359)
T 2og2_A          228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP  294 (359)
T ss_dssp             HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred             hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence            99999986532 2211        12355666644 467788899   999999999999999  99999 999999986


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEcCC---------hhHHhc-cCeEEEEeCCeE
Q psy10858        258 RKRMWDLLQVFVGKGRTVIMTTQY---------IEEAND-ASEVAFLYKGRI  299 (457)
Q Consensus       258 r~~i~~~i~~~~~~g~TIIisTH~---------~~ea~~-~dri~im~~GkI  299 (457)
                      +..     ....+.|.|+|++||.         ++.+.. ...|.++..|+.
T Consensus       295 ~~~-----~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          295 QAR-----EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             HHH-----HHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             HHH-----HHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            532     1222458999999993         334433 578999988864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.91  E-value=5.4e-26  Score=231.52  Aligned_cols=197  Identities=15%  Similarity=0.103  Sum_probs=147.1

Q ss_pred             cCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC-------Cc
Q psy10858         87 EEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS-------IY  159 (457)
Q Consensus        87 ~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~-------~~  159 (457)
                      .++++++++++.|+.+ ..||+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.|.+.|++...       ..
T Consensus        43 ~~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~  120 (347)
T 2obl_A           43 PDPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP  120 (347)
T ss_dssp             SCSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred             CCCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence            3579999999999832 7899999 9999999999999999999999999999999999999998865211       01


Q ss_pred             hhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC--CCCCCCCCCChhHHHHHHHHHHh
Q psy10858        160 HKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP--NLERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~--~~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      .....+.+++++|...     +..+.+......         ..+.+.....+-.  ..-..+..||+|| |||++|   
T Consensus       121 ~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---  182 (347)
T 2obl_A          121 QSTLSKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---  182 (347)
T ss_dssp             HHHHTTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred             hhhhhceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence            1123466888887532     233333211000         0011111111100  0114578899999 899999   


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--KGR-----TVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~--~g~-----TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                      +++|++      |+|+||..+..++++++.+.+  .|.     ||+++|||++ ...||++++|.+|+|+.+++++++..
T Consensus       183 l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~  255 (347)
T 2obl_A          183 SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH  255 (347)
T ss_dssp             TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred             cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence            688888      999999999999999888753  587     9999999999 34599999999999999999887653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.90  E-value=2.2e-28  Score=245.71  Aligned_cols=190  Identities=13%  Similarity=0.039  Sum_probs=140.0

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLV-----------------------VKRREFFVLLGASSAGKTTLLKAIVGLKNIS  144 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~-----------------------I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~  144 (457)
                      .+|++++|++.|+    ++++++++.                       +++|+++||+||||||||||+++|+|+++|+
T Consensus        42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~  117 (312)
T 3aez_A           42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW  117 (312)
T ss_dssp             CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred             CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence            4689999999995    355666654                       8999999999999999999999999999997


Q ss_pred             ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCC
Q psy10858        145 QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLS  224 (457)
Q Consensus       145 sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LS  224 (457)
                      .|.                 ++++|++|++.+++. |++||+.+.. .++.+.....+++.++++.++-...+.++.+||
T Consensus       118 ~G~-----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS  178 (312)
T 3aez_A          118 DHH-----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYS  178 (312)
T ss_dssp             TTC-----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred             CCC-----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCC
Confidence            552                 469999999998888 9999986532 235544333455667777776322457788999


Q ss_pred             hhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh-c-cCeEEEEeCCeEEEe
Q psy10858        225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN-D-ASEVAFLYKGRIIAQ  302 (457)
Q Consensus       225 GGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~-~-~dri~im~~GkI~~~  302 (457)
                      |||+||+++|+|++.+|+|||||||++.+|+.. ..    +..  .-+. +|+++|+.+.+. . .+|...|++|+-   
T Consensus       179 ~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~--~~D~-~I~V~a~~~~~~~R~i~R~~~~rd~~~---  247 (312)
T 3aez_A          179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSD--LFDF-SLYVDARIEDIEQWYVSRFLAMRTTAF---  247 (312)
T ss_dssp             TTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGG--GCSE-EEEEEECHHHHHHHHHHHHHHHTTTGG---
T ss_pred             hhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHH--hcCc-EEEEECCHHHHHHHHHHHHHHHHhccc---
Confidence            999999999999999999999999999998621 11    111  1234 466677777653 3 677666666652   


Q ss_pred             cChhhhhhc
Q psy10858        303 DSPDGFKSK  311 (457)
Q Consensus       303 gs~~~l~~~  311 (457)
                      .+|+..+.+
T Consensus       248 r~~~~~~~~  256 (312)
T 3aez_A          248 ADPESHFHH  256 (312)
T ss_dssp             GSTTSTTGG
T ss_pred             cCcchhhhc
Confidence            344444443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.90  E-value=5.1e-24  Score=218.00  Aligned_cols=86  Identities=19%  Similarity=0.303  Sum_probs=77.8

Q ss_pred             CCCCC-CCChhHHHHHHHHHHhh---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858        217 ERPVK-YLSGGQKRRLSFTIAIL---------HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       217 ~~~~~-~LSGGqkQRlsLA~ALl---------~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~  286 (457)
                      +++++ .||||||||++||++|+         ++|+||||||||++||+..+..+++.+..+.   .|+|++|| +++  
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~--  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP--  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT--
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc--
Confidence            45677 79999999999999999         8999999999999999999999999987652   79999999 454  


Q ss_pred             ccCeEEEEeCCeEEEecChhhh
Q psy10858        287 DASEVAFLYKGRIIAQDSPDGF  308 (457)
Q Consensus       287 ~~dri~im~~GkI~~~gs~~~l  308 (457)
                      .||++++|++|++++.|+++++
T Consensus       333 ~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             TCSEEEEEETTEEEECCCTTTS
T ss_pred             cCCEEEEEECCEEEecCCHHHH
Confidence            8899999999999999999876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.90  E-value=7.7e-27  Score=229.78  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=98.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES  198 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~  198 (457)
                      .++|+||||||||||+|+|+|+..|++|+|.++|.++..   ...++.+||++|++.+++.+||.||+.|+....+..  
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~--   78 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN--   78 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--
Confidence            378999999999999999999999999999999987643   234578999999999999999999998865544321  


Q ss_pred             HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy10858        199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT  278 (457)
Q Consensus       199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIis  278 (457)
                       ..+.+.+++..   ...+..+.+||||||||+++|||++.   +++||||++|||+..    +++++.+.+. ++||++
T Consensus        79 -~~~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~V  146 (270)
T 3sop_A           79 -CWEPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPV  146 (270)
T ss_dssp             -CSHHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEE
T ss_pred             -HHHHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEE
Confidence             11122222210   11345678999999999999999886   999999999999987    3444444455 888888


Q ss_pred             cCChhHH
Q psy10858        279 TQYIEEA  285 (457)
Q Consensus       279 TH~~~ea  285 (457)
                      .|..+.+
T Consensus       147 i~K~D~l  153 (270)
T 3sop_A          147 IAKADTM  153 (270)
T ss_dssp             ETTGGGS
T ss_pred             EeccccC
Confidence            8876543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.90  E-value=3.8e-23  Score=208.73  Aligned_cols=79  Identities=29%  Similarity=0.489  Sum_probs=71.1

Q ss_pred             CCCCCCCChhHHH------HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        217 ERPVKYLSGGQKR------RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       217 ~~~~~~LSGGqkQ------RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                      ++++.+|||||||      |+++|+||+.+|++|||||||+||||..+..++++++.+.++|.|||+|||+.+....||+
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~  322 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH  322 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence            5688999999999      6788889999999999999999999999999999988776778999999999765566999


Q ss_pred             EEEEe
Q psy10858        291 VAFLY  295 (457)
Q Consensus       291 i~im~  295 (457)
                      +++|+
T Consensus       323 ~~~l~  327 (339)
T 3qkt_A          323 VIRIS  327 (339)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99886

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.90  E-value=3.8e-25  Score=252.24  Aligned_cols=171  Identities=16%  Similarity=0.193  Sum_probs=125.9

Q ss_pred             cCceEEEe-----eEEEe-CCCCceeEeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc
Q psy10858         87 EEADEGKN-----TEKEE-LKPSNVVLNNCSLVVKR-------REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG  153 (457)
Q Consensus        87 ~~~Iei~n-----lsk~y-g~~~~~aL~~vs~~I~~-------Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~  153 (457)
                      ..+|++++     |++.| ++  ..+++|++|++++       |++++|+||||||||||||+| |++.+          
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------  814 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------  814 (1022)
T ss_dssp             CCCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred             CceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence            35799999     99999 55  7899999999987       999999999999999999999 99863          


Q ss_pred             cCCCCchhhhcCcEE-EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHH
Q psy10858        154 HPASIYHKTAGSKVG-YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRL  231 (457)
Q Consensus       154 ~~~~~~~~~~r~~IG-yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRl  231 (457)
                                ..++| ||||+..   .+||.+++.  .                   .+++. ...+..+++|+++++ +
T Consensus       815 ----------~aqiG~~Vpq~~~---~l~v~d~I~--~-------------------rig~~d~~~~~~stf~~em~~-~  859 (1022)
T 2o8b_B          815 ----------MAQMGCYVPAEVC---RLTPIDRVF--T-------------------RLGASDRIMSGESTFFVELSE-T  859 (1022)
T ss_dssp             ----------HHTTTCCEESSEE---EECCCSBEE--E-------------------ECC---------CHHHHHHHH-H
T ss_pred             ----------HhheeEEeccCcC---CCCHHHHHH--H-------------------HcCCHHHHhhchhhhHHHHHH-H
Confidence                      12356 9999863   456655541  1                   12221 123345678888876 9


Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEE--EecChh
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVR-KRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRII--AQDSPD  306 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r-~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~--~~gs~~  306 (457)
                      ++|++++++|+++||||||+|+|+... ..+|.+++.+.++ |.++|++||+++++.. +|++.++ +|++.  ..|+++
T Consensus       860 a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~  938 (1022)
T 2o8b_B          860 ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECE  938 (1022)
T ss_dssp             HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC------
T ss_pred             HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCcc
Confidence            999999999999999999999999985 5578888887766 9999999999999975 8998886 58887  445543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.90  E-value=1.4e-25  Score=226.62  Aligned_cols=133  Identities=14%  Similarity=0.140  Sum_probs=110.8

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHH
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET  185 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~En  185 (457)
                      +++++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|.+....  ...++.++|++|             
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~~~~~i~~~~g-------------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KHHKNYTQLFFG-------------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SSCSSEEEEECB-------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--ccchhEEEEEeC-------------
Confidence            78999999999999999999999999999999999999999999998642211  113455666641             


Q ss_pred             HHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858        186 LNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL  265 (457)
Q Consensus       186 L~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i  265 (457)
                                                             |||+||++||+||..+|++|||||||+       .++++++
T Consensus       225 ---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l  258 (330)
T 2pt7_A          225 ---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY  258 (330)
T ss_dssp             ---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred             ---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence                                                   899999999999999999999999998       2466777


Q ss_pred             HHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeE
Q psy10858        266 QVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRI  299 (457)
Q Consensus       266 ~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI  299 (457)
                      +.+...+.|+|+|||+++....|||+++|.+|..
T Consensus       259 ~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          259 NVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred             HHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence            7665545689999999995566999999988753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.89  E-value=7.2e-25  Score=215.66  Aligned_cols=183  Identities=11%  Similarity=0.107  Sum_probs=124.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+..   ....++++.++.|...+    ++
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~---~~~~~~r~~~~~~~~~~----~~   94 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES---VEETAEDLIGLHNRVRL----RQ   94 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC---HHHHHHHHHHHHTTCCG----GG
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC---HHHHHHHHHHHHcCCCh----hh
Confidence            4579999999999999999999999999999999999999888 7766554432   22233445555554332    22


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhH-HHHHHHHHHhhcCCceEEEeCCCC---C---CCH
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQ-KRRLSFTIAILHKPQLIILDEPCV---G---VDP  255 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq-kQRlsLA~ALl~~P~lLILDEPTs---G---LDp  255 (457)
                      .+++... .   ++.++..+.+.++++...+. ....+.++|.++ +||+. |+|+.++|++||+||||+   +   +|+
T Consensus        95 ~~~l~~~-~---~~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~  168 (296)
T 1cr0_A           95 SDSLKRE-I---IENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE  168 (296)
T ss_dssp             CHHHHHH-H---HHHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred             ccccccC-C---CCHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence            3344322 1   12233344444444332321 233456789998 66776 999999999999999999   5   565


Q ss_pred             -HHHHHHHHHHHHHH-hCCcEEEEEcCCh--h--------------------HHhc-cCeEEEEeCCeE
Q psy10858        256 -LVRKRMWDLLQVFV-GKGRTVIMTTQYI--E--------------------EAND-ASEVAFLYKGRI  299 (457)
Q Consensus       256 -~~r~~i~~~i~~~~-~~g~TIIisTH~~--~--------------------ea~~-~dri~im~~GkI  299 (457)
                       .....+++.++.++ +.|+|||++||+.  +                    .++. ||+|++|++|+.
T Consensus       169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence             66778888876664 4599999999995  5                    5554 999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.89  E-value=3e-27  Score=251.94  Aligned_cols=182  Identities=18%  Similarity=0.128  Sum_probs=128.6

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHcCCCCCceEEEEcCccCCCCchhhhc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSL-VVKRREFFVLLGASSAGKTTLLKA--IVGLKNISQGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~-~I~~Gei~gLlGpNGaGKTTLLk~--L~Gll~p~sG~I~i~G~~~~~~~~~~~r  164 (457)
                      .+++.+++.+..++  ..+|++||| .|++||+++|+||||||||||+++  ++|+++|++|.|+++|.+... .....+
T Consensus        11 ~~~~~~~~~~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~-~~~~~~   87 (525)
T 1tf7_A           11 NNSEHQAIAKMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ-DIIKNA   87 (525)
T ss_dssp             ---CCSSCCEECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred             CCccccccccccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHH
Confidence            35666667666666  789999999 999999999999999999999999  789999999999999977321 122334


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-cCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-HKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-~~P~l  243 (457)
                      +.+||++|++...+.      +.+ ..... ..                 ........+..++ +.-.++.+|. .+|++
T Consensus        88 ~~~g~~~q~~~~~~~------l~~-~~~~~-~~-----------------~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~  141 (525)
T 1tf7_A           88 RSFGWDLAKLVDEGK------LFI-LDASP-DP-----------------EGQEVVGGFDLSA-LIERINYAIQKYRARR  141 (525)
T ss_dssp             GGGTCCHHHHHHTTS------EEE-EECCC-CS-----------------SCCSCCSSHHHHH-HHHHHHHHHHHHTCSE
T ss_pred             HHcCCChHHhhccCc------EEE-EecCc-cc-----------------chhhhhcccCHHH-HHHHHHHHHHHcCCCE
Confidence            678999998653211      110 00000 00                 0001112222222 2333344442 46899


Q ss_pred             EEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH---------hc-cCeEEEEeCCe
Q psy10858        244 IILDEPCV-----GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA---------ND-ASEVAFLYKGR  298 (457)
Q Consensus       244 LILDEPTs-----GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea---------~~-~dri~im~~Gk  298 (457)
                      ++|||||+     ++|+..++.++++++.+++.|+|||++||+++++         +. ||+|++|++|+
T Consensus       142 lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~  211 (525)
T 1tf7_A          142 VSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL  211 (525)
T ss_dssp             EEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred             EEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence            99999998     4699999999999888877899999999999984         45 99999999843

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.89  E-value=4.9e-24  Score=227.20  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=120.2

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      +..|++|++++|+|+||||||||+++++|+..++ |+                 +-+.|.+|++.    .++.++.    
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~----~~l~~~~----  328 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR----AQLLRNA----  328 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH----HHHHHHH----
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH----HHHHHHH----
Confidence            4589999999999999999999999999998874 43                 11445566541    1222322    


Q ss_pred             hhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH-----HHHHHHHH
Q psy10858        191 MIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL-----VRKRMWDL  264 (457)
Q Consensus       191 ~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~-----~r~~i~~~  264 (457)
                      ..++++.+       ++ ...++. ..+..+.+|||||+||+++|+++..+|++||+| ||+|||+.     .++.++++
T Consensus       329 ~~~g~~~~-------~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l  399 (525)
T 1tf7_A          329 YSWGMDFE-------EM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGV  399 (525)
T ss_dssp             HTTSCCHH-------HH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred             HHcCCCHH-------HH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHH
Confidence            12344321       11 123442 257788999999999999999999999999999 99999999     99999999


Q ss_pred             HHHHHhCCcEEEEEcCCh----------hHHhc-cCeEEEEeCCe
Q psy10858        265 LQVFVGKGRTVIMTTQYI----------EEAND-ASEVAFLYKGR  298 (457)
Q Consensus       265 i~~~~~~g~TIIisTH~~----------~ea~~-~dri~im~~Gk  298 (457)
                      ++.+++.|+|||++||++          +++.. ||+|++|++|+
T Consensus       400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            888888899999999999          66765 89999999887

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=8.3e-24  Score=238.34  Aligned_cols=169  Identities=22%  Similarity=0.266  Sum_probs=131.8

Q ss_pred             HHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC----------HHHHH
Q psy10858        132 TLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD----------ESIWL  201 (457)
Q Consensus       132 TLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~----------~~~~~  201 (457)
                      |...|..+.+.|.+|+|.++|+++..                   +..+|+.+++.+...+ +++          .++..
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~~-------------------~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~  442 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIHE-------------------FTELSISEELEFLKNL-NLTEREREIVGELLKEIE  442 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHHH-------------------HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHH
T ss_pred             cchhcccccCChHhcCcEECCccHHH-------------------hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHH
Confidence            34456677789999999999876522                   2335666666653322 111          11222


Q ss_pred             HHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy10858        202 FQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM  277 (457)
Q Consensus       202 ~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi  277 (457)
                      + ..+.+..++|..  +++++.+|||||||||+||+||+.+|+  +|||||||+||||..++.++++++.++++|.|||+
T Consensus       443 ~-~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv  521 (916)
T 3pih_A          443 K-RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV  521 (916)
T ss_dssp             H-HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred             H-HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            2 345677788864  689999999999999999999999887  99999999999999999999999888888999999


Q ss_pred             EcCChhHHhccCeEEEE------eCCeEEEecChhhhhhcCCcccHHHHHH
Q psy10858        278 TTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSKYSMPKLSDVFY  322 (457)
Q Consensus       278 sTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~~~~~~l~~~f~  322 (457)
                      ||||++++..||+|++|      ++|++++.|+++++.+.... .+...|.
T Consensus       522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~-~~~~~~l  571 (916)
T 3pih_A          522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDS-SLTGEYL  571 (916)
T ss_dssp             ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCTT-CHHHHHH
T ss_pred             EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCchh-cchhhhh
Confidence            99999998889999999      99999999999999865321 3444444

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.88  E-value=5.7e-25  Score=211.49  Aligned_cols=173  Identities=16%  Similarity=0.135  Sum_probs=114.4

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      +.+|+||||++++|+++||+||||||||||+++|+|++    |.+.++          ..++.++|++|+. +++.+|+.
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~~   76 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTAE   76 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCHh
Confidence            78999999999999999999999999999999999976    444332          2357899999995 78889999


Q ss_pred             HHHHHhhhhcCCCH--HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDE--SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM  261 (457)
Q Consensus       184 EnL~~~~~l~g~~~--~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i  261 (457)
                      +++.+....++...  ....+.+.+.++.+. ...++++..||+||+||+++ ++++.+|+++|||||....|+.    +
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l  150 (245)
T 2jeo_A           77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I  150 (245)
T ss_dssp             HHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H
T ss_pred             HhhhhhccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H
Confidence            99877654443321  111223333444331 23567889999999999988 5888999999999999888864    2


Q ss_pred             HHHHHHHHhCCcEEEEEcCChhHH-hc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        262 WDLLQVFVGKGRTVIMTTQYIEEA-ND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       262 ~~~i~~~~~~g~TIIisTH~~~ea-~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +++      .+.+|+++||+...+ +. ++++   ++|+     +++++.+.
T Consensus       151 ~~~------~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~  188 (245)
T 2jeo_A          151 RDM------FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ  188 (245)
T ss_dssp             HTT------CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred             HHh------cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence            211      378999999985444 44 4444   6664     56666543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.88  E-value=6.9e-23  Score=217.94  Aligned_cols=79  Identities=19%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             CCCCCC-ChhHHHHHHHHHHhhcCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        218 RPVKYL-SGGQKRRLSFTIAILHKP--QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       218 ~~~~~L-SGGqkQRlsLA~ALl~~P--~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      +++.+| ||||||||+||+||+.+|  ++|||||||+|||+.++..|+++++.+.+ |.|||+|||+++.+..|||+++|
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~  470 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV  470 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence            467788 999999999999999999  99999999999999999999999888776 89999999999988889999999


Q ss_pred             eCC
Q psy10858        295 YKG  297 (457)
Q Consensus       295 ~~G  297 (457)
                      +++
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            655

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.87  E-value=4.6e-23  Score=232.99  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=115.2

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAI--------VGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA  175 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L--------~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~  175 (457)
                      ..+++|++|++++|++++|+|||||||||+||++        .|..-|.++..                  ++++   . 
T Consensus       649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------------------~~~~---d-  706 (934)
T 3thx_A          649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------------------VSIV---D-  706 (934)
T ss_dssp             CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE------------------EECC---S-
T ss_pred             eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc------------------chHH---H-
Confidence            5789999999999999999999999999999999        55444433211                  1110   0 


Q ss_pred             CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh--hcCCceEEEeCCCCCC
Q psy10858        176 MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI--LHKPQLIILDEPCVGV  253 (457)
Q Consensus       176 L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL--l~~P~lLILDEPTsGL  253 (457)
                                                    .++..+++  .+.....+|+|+++++.+|+++  +++|+++||||||+|+
T Consensus       707 ------------------------------~i~~~ig~--~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl  754 (934)
T 3thx_A          707 ------------------------------CILARVGA--GDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT  754 (934)
T ss_dssp             ------------------------------EEEEECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred             ------------------------------HHHHhcCc--hhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence                                          01111222  1233456888888888888888  9999999999999999


Q ss_pred             CHHHHHHH-HHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhh
Q psy10858        254 DPLVRKRM-WDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       254 Dp~~r~~i-~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~  309 (457)
                      ||..+..+ |.+++.+.+ .|.|+|++||+.+.+..||++..|++|++.+.++++++.
T Consensus       755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~  812 (934)
T 3thx_A          755 STYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT  812 (934)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence            99999888 777887765 599999999998888889999999999999988887764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.87  E-value=8.1e-22  Score=221.88  Aligned_cols=132  Identities=22%  Similarity=0.354  Sum_probs=115.9

Q ss_pred             CCCCHHHHHHHhhhhcCCCH----------HHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--ce
Q psy10858        178 GELTIKETLNFFGMIYGMDE----------SIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--QL  243 (457)
Q Consensus       178 ~~lTV~EnL~~~~~l~g~~~----------~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~l  243 (457)
                      ..+||.|++.|+..+ +++.          +++.+++ +.+..+||..  +++.+.+|||||||||+||+||..+|  ++
T Consensus       450 ~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l  527 (972)
T 2r6f_A          450 TAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL  527 (972)
T ss_dssp             HTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred             hhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence            458999999996554 4555          3455565 3578899964  69999999999999999999999985  99


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~  311 (457)
                      |||||||+||||..++.++++++.+++.|.|||+|+||++++..||||++|      ++|++++.|+++++...
T Consensus       528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~  601 (972)
T 2r6f_A          528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND  601 (972)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred             EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence            999999999999999999999998888899999999999998889999999      89999999999998763

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.86  E-value=3.5e-22  Score=223.45  Aligned_cols=181  Identities=15%  Similarity=0.162  Sum_probs=132.3

Q ss_pred             CCCccHHHHHHHHHcC---------CCCCceEEEEcCccCCCC---chhhhcCcEEEEcCCCCCCC----CCCHHHHHHH
Q psy10858        125 ASSAGKTTLLKAIVGL---------KNISQGEIWVLGGHPASI---YHKTAGSKVGYMPQELAMFG----ELTIKETLNF  188 (457)
Q Consensus       125 pNGaGKTTLLk~L~Gl---------l~p~sG~I~i~G~~~~~~---~~~~~r~~IGyvpQ~~~L~~----~lTV~EnL~~  188 (457)
                      .+..||+|+.+.+...         +.+.+|+|.++|+++...   ........++-+||++....    .++. ++...
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  348 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA  348 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence            4667999999988874         456778888888766431   11111111111222211000    0110 01111


Q ss_pred             hhhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhhcCC--ceEEEeCCCCCCCHHHHHHHHHH
Q psy10858        189 FGMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKP--QLIILDEPCVGVDPLVRKRMWDL  264 (457)
Q Consensus       189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl~~P--~lLILDEPTsGLDp~~r~~i~~~  264 (457)
                      ...+    .+++.++++ .+..++|..  +++.+.+|||||||||+||+||+.+|  ++|||||||+||||..++.++++
T Consensus       349 ~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~  423 (842)
T 2vf7_A          349 LQRM----AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA  423 (842)
T ss_dssp             HHHH----HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH
T ss_pred             HHHH----HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH
Confidence            1111    234566666 577899964  69999999999999999999999999  59999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEcCChhHHhccCeEEEE------eCCeEEEecChhhhhhc
Q psy10858        265 LQVFVGKGRTVIMTTQYIEEANDASEVAFL------YKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       265 i~~~~~~g~TIIisTH~~~ea~~~dri~im------~~GkI~~~gs~~~l~~~  311 (457)
                      ++.+++.|.|||+|+|+++++..||+|++|      ++|++++.|+++++...
T Consensus       424 l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          424 LENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             HHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             HHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            988888899999999999988789999999      79999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.85  E-value=6.5e-24  Score=211.61  Aligned_cols=164  Identities=14%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCceEEEEcCccCCCCchhhhcCcEEEEc
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL-KNISQGEIWVLGGHPASIYHKTAGSKVGYMP  171 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl-l~p~sG~I~i~G~~~~~~~~~~~r~~IGyvp  171 (457)
                      .||+++|++  +.++++++|+|      +|+|+||||||||+++|.|. +.|++| |.++|.++...   ...+.++|++
T Consensus         2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t---~~~~~~~~~~   69 (301)
T 2qnr_A            2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT---VQIEASTVEI   69 (301)
T ss_dssp             ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred             CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc---ceEeeEEEEe
Confidence            578999998  89999999998      99999999999999999998 889999 88888765431   1135689999


Q ss_pred             CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC
Q psy10858        172 QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV  251 (457)
Q Consensus       172 Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs  251 (457)
                      |...++..+|+.|+..++.....  .+........+.+.     .++++.++|||||||+.+|||++    +|++||||+
T Consensus        70 q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~~-----~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~  138 (301)
T 2qnr_A           70 EERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYIDEQ-----FERYLHDESGLNRRHIIDNRVHC----CFYFISPFG  138 (301)
T ss_dssp             C---CCEEEEEEEEC-------------CTTHHHHHHHH-----HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred             cCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHHHHH-----HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence            99888888999998876433210  01111111112111     24678899999999999999986    999999998


Q ss_pred             -CCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChh
Q psy10858        252 -GVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIE  283 (457)
Q Consensus       252 -GLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~  283 (457)
                       |||+...    ++++.+.+ .++++|+++||+.
T Consensus       139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence             5999874    44444433 3789999999984

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.85  E-value=8e-23  Score=191.22  Aligned_cols=148  Identities=14%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHH
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNI-------SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKET  185 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-------~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~En  185 (457)
                      .|++|++++|+||||||||||+++|+|+..+       ..|.+++++.....      ..++++++|...++++ |+.||
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~-~~~~~   93 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPD-EVLKH   93 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHH-HHHHT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHH-HHhhc
Confidence            6899999999999999999999999996554       44577777654211      1245666776665544 56665


Q ss_pred             HHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChh-HHHHHHHHHHhh-------cCCceEEEeCCCCCCCHH-
Q psy10858        186 LNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG-QKRRLSFTIAIL-------HKPQLIILDEPCVGVDPL-  256 (457)
Q Consensus       186 L~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGG-qkQRlsLA~ALl-------~~P~lLILDEPTsGLDp~-  256 (457)
                      +.+...                               ++++ +++.+..+.+++       .+|++|+|||||+++|+. 
T Consensus        94 ~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~  142 (231)
T 4a74_A           94 IYVARA-------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY  142 (231)
T ss_dssp             EEEEEC-------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred             EEEEec-------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence            533211                               1222 222233333333       499999999999999983 


Q ss_pred             ------HH-----HHHHHHHH-HHHhCCcEEEEEcCChhH----Hhc-cCeEEEEeCCe
Q psy10858        257 ------VR-----KRMWDLLQ-VFVGKGRTVIMTTQYIEE----AND-ASEVAFLYKGR  298 (457)
Q Consensus       257 ------~r-----~~i~~~i~-~~~~~g~TIIisTH~~~e----a~~-~dri~im~~Gk  298 (457)
                            .+     ..+++.+. ..++.|+|||++||.+++    +.. ||++++|++|+
T Consensus       143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence                  22     25666644 444569999999997665    655 89999998753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.84  E-value=2.3e-22  Score=223.39  Aligned_cols=160  Identities=15%  Similarity=0.198  Sum_probs=117.6

Q ss_pred             CceEEEeeEEEe---CCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCccCCCCchhhh
Q psy10858         88 EADEGKNTEKEE---LKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        88 ~~Iei~nlsk~y---g~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      ..+++++...-.   ++  ..+++|+||+   |++++|+||||||||||||+|+|+.. ++.|.+.     +      ..
T Consensus       549 ~~i~i~~~rHP~le~~~--~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----p------a~  612 (765)
T 1ewq_A          549 DRLQIRAGRHPVVERRT--EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----P------AE  612 (765)
T ss_dssp             SSEEEEEECCTTGGGTS--CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----S------SS
T ss_pred             CcEEEEEeECceEccCC--ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----e------hh
Confidence            456677663333   33  6789999999   99999999999999999999999874 6777642     1      11


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh--hcCC
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI--LHKP  241 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL--l~~P  241 (457)
                      +..+|+++|   ++..+++.||+..                                 .+|+||+|++.+|+++  +++|
T Consensus       613 ~~~i~~v~~---i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p  656 (765)
T 1ewq_A          613 EAHLPLFDG---IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATEN  656 (765)
T ss_dssp             EEEECCCSE---EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred             ccceeeHHH---hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCC
Confidence            346888877   5666777776532                                 3689999999999999  9999


Q ss_pred             ceEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858        242 QLIILDEP---CVGVDPLVR-KRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       242 ~lLILDEP---TsGLDp~~r-~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs  304 (457)
                      +++|||||   |++||+.+. ..+++.+..   .|.|+|++||+.+.+..+  .-.+.++++.+...
T Consensus       657 ~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~  718 (765)
T 1ewq_A          657 SLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG--LPRLKNLHVAAREE  718 (765)
T ss_dssp             EEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC--CTTEEEEEEEEECC
T ss_pred             CEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh--hhcceEEEEEEEEc
Confidence            99999999   999999876 456666543   589999999999887655  22344555555433

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.84  E-value=2.2e-20  Score=193.92  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=69.6

Q ss_pred             CCCCCCChhHHHHHHHHHHhh----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE
Q psy10858        218 RPVKYLSGGQKRRLSFTIAIL----HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF  293 (457)
Q Consensus       218 ~~~~~LSGGqkQRlsLA~ALl----~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i  293 (457)
                      +++..||||||||++||++|+    .+|+++||||||++||+..+..+++++....++|.++|+|||+......||++++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~  408 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG  408 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence            345569999999999999999    5899999999999999999999999988765568999999999777777999998


Q ss_pred             Ee
Q psy10858        294 LY  295 (457)
Q Consensus       294 m~  295 (457)
                      |.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.83  E-value=3.8e-22  Score=195.41  Aligned_cols=132  Identities=14%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      .+|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...    .+..+++++|.          
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~v~q~----------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSIVNQR----------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEEE----------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcceeeeHH----------
Confidence            4789999  9999999999999999999999999999998 99999988665321    11122333331          


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                                                .+++..     .+|      |++||+||..+|++|+|||||   |+.....+  
T Consensus        79 --------------------------~~gl~~-----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~--  116 (261)
T 2eyu_A           79 --------------------------EVGEDT-----KSF------ADALRAALREDPDVIFVGEMR---DLETVETA--  116 (261)
T ss_dssp             --------------------------EBTTTB-----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH--
T ss_pred             --------------------------HhCCCH-----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH--
Confidence                                      223211     222      899999999999999999999   98886544  


Q ss_pred             HHHHHHhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        264 LLQVFVGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       264 ~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                       ++.. +.|.+|+++||+.+.+..+||++.|..
T Consensus       117 -l~~~-~~g~~vl~t~H~~~~~~~~dri~~l~~  147 (261)
T 2eyu_A          117 -LRAA-ETGHLVFGTLHTNTAIDTIHRIVDIFP  147 (261)
T ss_dssp             -HHHH-HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred             -HHHH-ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence             3333 569999999999885556899887753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.83  E-value=1.2e-23  Score=228.51  Aligned_cols=193  Identities=13%  Similarity=0.190  Sum_probs=122.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNC----------SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPA  156 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~v----------s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~  156 (457)
                      .+++++|+++.|+...+.+++.+          +++++.   +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence            46889999999975212344444          466665   999999999999999999999988 8999999998752


Q ss_pred             C---CchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHH
Q psy10858        157 S---IYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSF  233 (457)
Q Consensus       157 ~---~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsL  233 (457)
                      .   ......++++||++|++.+++.+||.+|+.+.....+.                  ..     ..+|   ++++.+
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~------------------~~-----~~~s---~~~i~l  139 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG------------------EG-----MGIS---HELITL  139 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC------------------SS-----SCCC---SCCEEE
T ss_pred             EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC------------------Cc-----cccc---hHHHHH
Confidence            1   11123467899999999999999999999764332110                  00     0011   122344


Q ss_pred             HHHhhcCCceEEEeCC------CCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEcCChhHH--------hc-----cCeEE
Q psy10858        234 TIAILHKPQLIILDEP------CVGVDPLVRKRMWDLLQVFV-G-KGRTVIMTTQYIEEA--------ND-----ASEVA  292 (457)
Q Consensus       234 A~ALl~~P~lLILDEP------TsGLDp~~r~~i~~~i~~~~-~-~g~TIIisTH~~~ea--------~~-----~dri~  292 (457)
                      +++..+.|+++|+|||      |+|||+..++.++++++.+. + .+.+++++||+++.+        ..     ...|+
T Consensus       140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~  219 (608)
T 3szr_A          140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG  219 (608)
T ss_dssp             EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred             HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence            4555678999999999      99999999999999977743 3 378899999998632        11     24588


Q ss_pred             EEeCCeEEEecChhhhh
Q psy10858        293 FLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       293 im~~GkI~~~gs~~~l~  309 (457)
                      ++.++.++..|+.+++.
T Consensus       220 VlTK~Dlv~~g~~~~~~  236 (608)
T 3szr_A          220 ILTKPDLVDKGTEDKVV  236 (608)
T ss_dssp             EEECGGGSSSSSTTCCC
T ss_pred             EecchhhcCcccHHHHH
Confidence            99999888888765544

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.83  E-value=1.8e-20  Score=169.08  Aligned_cols=84  Identities=27%  Similarity=0.444  Sum_probs=74.2

Q ss_pred             CCCCCCCCChhHHHHHHHH------HHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccC
Q psy10858        216 LERPVKYLSGGQKRRLSFT------IAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDAS  289 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA------~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~d  289 (457)
                      .++++.+||||||||++||      +||+++|++|||||||+|||+..++.+++.+..+.++|+|||++||+++....||
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d  130 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD  130 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence            4678999999999999886      8999999999999999999999999999998887667999999999995445699


Q ss_pred             eEEEE--eCCeE
Q psy10858        290 EVAFL--YKGRI  299 (457)
Q Consensus       290 ri~im--~~GkI  299 (457)
                      ++++|  .+|..
T Consensus       131 ~ii~l~~~~g~s  142 (148)
T 1f2t_B          131 HVIRISLENGSS  142 (148)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEcCCCeE
Confidence            99999  45643

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.82  E-value=4.3e-21  Score=216.46  Aligned_cols=154  Identities=15%  Similarity=0.192  Sum_probs=104.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ..|++||||++++|++++|+||||||||||||+|+++.-...     .|..+..     ....++++   ..++..+.+.
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-----~g~~vpa-----~~~~i~~~---d~i~~~ig~~  726 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-----IGSYVPA-----EEATIGIV---DGIFTRMGAA  726 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-----HTCCBSS-----SEEEEECC---SEEEEEC---
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-----cCccccc-----hhhhhhHH---HHHHHhCChH
Confidence            679999999999999999999999999999999986532110     0100000     00112211   1111111111


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH-
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW-  262 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~-  262 (457)
                      +                              ...+..+++|+||+|++.++++ +++|+++||||||+|+||..+..+. 
T Consensus       727 d------------------------------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~  775 (918)
T 3thx_B          727 D------------------------------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAY  775 (918)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHH
T ss_pred             H------------------------------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            1                              1344567899999999999999 8999999999999999999998886 


Q ss_pred             HHHHHHHh-CCcEEEEEcCChhHHhccCeEE-EEeCCeEEE
Q psy10858        263 DLLQVFVG-KGRTVIMTTQYIEEANDASEVA-FLYKGRIIA  301 (457)
Q Consensus       263 ~~i~~~~~-~g~TIIisTH~~~ea~~~dri~-im~~GkI~~  301 (457)
                      .+++.+.+ .|.|||++||+++.++.+|+.- .+.++.+.+
T Consensus       776 ~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~  816 (918)
T 3thx_B          776 ATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGF  816 (918)
T ss_dssp             HHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEE
T ss_pred             HHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEEE
Confidence            66777654 6999999999998876665532 134444443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.82  E-value=2.2e-23  Score=194.30  Aligned_cols=146  Identities=17%  Similarity=0.172  Sum_probs=114.4

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCC--CCCCHHHHHHHhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMF--GELTIKETLNFFG  190 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~--~~lTV~EnL~~~~  190 (457)
                      ..++|+++||+||||||||||+++|+|++.|                      .++|++|++.++  ..+|+.+++.+..
T Consensus         2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~   59 (211)
T 3asz_A            2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY   59 (211)
T ss_dssp             ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence            3579999999999999999999999998764                      489999998776  5689998876532


Q ss_pred             hhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhH----HHHHHHHHHhhcCCceEEEeCCCCC-------CCHHHH
Q psy10858        191 MIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQ----KRRLSFTIAILHKPQLIILDEPCVG-------VDPLVR  258 (457)
Q Consensus       191 ~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGq----kQRlsLA~ALl~~P~lLILDEPTsG-------LDp~~r  258 (457)
                         +.+.....+++.++++.+++.. .++++.++|+||    +||+++|++++.+|.++++||||++       ||+...
T Consensus        60 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~  136 (211)
T 3asz_A           60 ---DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD  136 (211)
T ss_dssp             ---TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred             ---CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence               2222222344556667776643 566788999997    4788999999999999999999999       999999


Q ss_pred             HHHHHHHHH-HHhCCcEEEEEcCChh
Q psy10858        259 KRMWDLLQV-FVGKGRTVIMTTQYIE  283 (457)
Q Consensus       259 ~~i~~~i~~-~~~~g~TIIisTH~~~  283 (457)
                      ..+++.+.. ..+.|.|++.++|++.
T Consensus       137 ~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          137 ERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999998654 4567999999999853

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.81  E-value=7.2e-22  Score=184.20  Aligned_cols=170  Identities=11%  Similarity=0.032  Sum_probs=114.7

Q ss_pred             ceeEeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSL-VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~-~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ...|+++.. .+++|++++|+||||||||||+++|++...+++|.|.+.+.+............+|+.+|..... .+.+
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   87 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII   87 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence            567888888 89999999999999999999999999988888888877665432111001111233333321100 0000


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCc--eEEEeCCCCCC--CHHHH
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ--LIILDEPCVGV--DPLVR  258 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~--lLILDEPTsGL--Dp~~r  258 (457)
                               +.....            .++ .  .......|.++.++...+.+..++|+  +|++||||+++  |+..+
T Consensus        88 ---------~~~~~~------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~  143 (235)
T 2w0m_A           88 ---------IDALMK------------EKE-D--QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMA  143 (235)
T ss_dssp             ---------EECCC-----------------C--TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGH
T ss_pred             ---------Eecccc------------ccC-c--eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHH
Confidence                     000000            000 0  01123449999999888888888999  99999999887  99999


Q ss_pred             HHHHHHHHHH-HhCCcEEEEEcCCh--------hHHhc-cCeEEEEeCCe
Q psy10858        259 KRMWDLLQVF-VGKGRTVIMTTQYI--------EEAND-ASEVAFLYKGR  298 (457)
Q Consensus       259 ~~i~~~i~~~-~~~g~TIIisTH~~--------~ea~~-~dri~im~~Gk  298 (457)
                      +.+++.+..+ ++.|+|||++||++        ..++. ||+|++|+...
T Consensus       144 ~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          144 RKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            9999986665 45699999999999        44655 99999998653

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.81  E-value=4e-21  Score=214.42  Aligned_cols=156  Identities=13%  Similarity=0.186  Sum_probs=112.7

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ..+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|      ..+..     ....+|+++|   ++..+++
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~~  659 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVGA  659 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC-
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCCH
Confidence            6799999999 99999999999999999999999997432 222      11111     1234666665   5556666


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH-
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM-  261 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i-  261 (457)
                      .|++..                              ..+++|+||++ ++.+...+++|+++|||||++|+|+.....+ 
T Consensus       660 ~d~l~~------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~  708 (800)
T 1wb9_A          660 ADDLAS------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLA  708 (800)
T ss_dssp             ----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHH
T ss_pred             HHHHHh------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHH
Confidence            666531                              12346777765 4555567899999999999999999888776 


Q ss_pred             HHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858        262 WDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       262 ~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~  305 (457)
                      |.+++.+.+ .|.++|++||+++.+..||++..+++|++.+....
T Consensus       709 ~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~  753 (800)
T 1wb9_A          709 WACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHG  753 (800)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEET
T ss_pred             HHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcC
Confidence            788888776 49999999999988777888877888888765443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.80  E-value=6.9e-21  Score=190.56  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=107.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hh--hcCcEEEEcCCCCCCCCCCHHHHHHHh
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KT--AGSKVGYMPQELAMFGELTIKETLNFF  189 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~--~r~~IGyvpQ~~~L~~~lTV~EnL~~~  189 (457)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....    ..  .+..++|++|++.+++.+++++|+.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999988754221    11  135699999999998889999998753


Q ss_pred             hhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858        190 GMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       190 ~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~  269 (457)
                      .. .+..        ..+++..++  .+.....++...+||++||||++.+|+.++|     .||+.+...+++.++...
T Consensus       181 ~~-~~~d--------~~llDt~G~--~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~  244 (304)
T 1rj9_A          181 KA-RGYD--------LLFVDTAGR--LHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH  244 (304)
T ss_dssp             HH-HTCS--------EEEECCCCC--CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred             Hh-CCCC--------EEEecCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence            21 1110        001222232  2222233455569999999999999994333     344444444555544443


Q ss_pred             h-CCcEEEEEcCChhHH
Q psy10858        270 G-KGRTVIMTTQYIEEA  285 (457)
Q Consensus       270 ~-~g~TIIisTH~~~ea  285 (457)
                      + .|.|+|++||+.+.+
T Consensus       245 ~~~~~t~iivTh~d~~a  261 (304)
T 1rj9_A          245 EAVGLTGVIVTKLDGTA  261 (304)
T ss_dssp             HHHCCSEEEEECTTSSC
T ss_pred             HHcCCcEEEEECCcccc
Confidence            3 489999999986543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.79  E-value=1.2e-21  Score=187.27  Aligned_cols=148  Identities=18%  Similarity=0.264  Sum_probs=107.1

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH----
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI----  182 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV----  182 (457)
                      +-.-..++|++++|+||||||||||+++|+|+.+|  .+|.|.+.+.++..    ..+..++|+||++.+|+.+++    
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f   83 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAF   83 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHH
Confidence            34456899999999999999999999999999986  68999888765432    124579999999887777776    


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW  262 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~  262 (457)
                      .|++.+++..+|.+.+    .+.++                              +..++++|||     ||+.+++.++
T Consensus        84 ~E~~~~~~~~yg~~~~----~v~~~------------------------------l~~G~illLD-----LD~~~~~~i~  124 (219)
T 1s96_A           84 LEHAEVFGNYYGTSRE----AIEQV------------------------------LATGVDVFLD-----IDWQGAQQIR  124 (219)
T ss_dssp             EEEEEETTEEEEEEHH----HHHHH------------------------------HTTTCEEEEE-----CCHHHHHHHH
T ss_pred             HHHHHHHhccCCCCHH----HHHHH------------------------------HhcCCeEEEE-----ECHHHHHHHH
Confidence            5655554444444322    12222                              2236999999     9999999999


Q ss_pred             HHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        263 DLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       263 ~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      +.+.    +++|||++||++++++.  |+  +..|    .++++++..+
T Consensus       125 ~~l~----~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r  161 (219)
T 1s96_A          125 QKMP----HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR  161 (219)
T ss_dssp             HHCT----TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred             HHcc----CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence            9864    58999999999999864  32  5667    5778877654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.78  E-value=1e-21  Score=183.74  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=108.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD  196 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~  196 (457)
                      |++++|+||||||||||+++|+|+++ ++| |.++|......  ...++++||++|+.  ....   +++   +++ +..
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~--~g~~---~~l---~~~-~~~   67 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL--SGTR---GPL---SRV-GLE   67 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET--TSCE---EEE---EEC-CCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec--ccce---ehh---hcc-ccc
Confidence            78999999999999999999999999 999 99988776432  23568899999986  2211   111   111 000


Q ss_pred             HHHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHHHH-HHHH---HhhcCCceEEEeC--CCCCCCHHHHHHHHHHHHHHH
Q psy10858        197 ESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRL-SFTI---AILHKPQLIILDE--PCVGVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       197 ~~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQRl-sLA~---ALl~~P~lLILDE--PTsGLDp~~r~~i~~~i~~~~  269 (457)
                      ..           ...- +...++...+|+|||+++ ++++   |++++|++|||||  |+..+|+...+.++++++   
T Consensus        68 ~~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~---  133 (189)
T 2i3b_A           68 PP-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS---  133 (189)
T ss_dssp             CC-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---
T ss_pred             CC-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh---
Confidence            00           0000 013456667999999988 4454   6899999999999  899999976666655543   


Q ss_pred             hCCcEEEE----EcCChhHHhccCeEEEEeCCeEEEec
Q psy10858        270 GKGRTVIM----TTQYIEEANDASEVAFLYKGRIIAQD  303 (457)
Q Consensus       270 ~~g~TIIi----sTH~~~ea~~~dri~im~~GkI~~~g  303 (457)
                       ...++|+    ++|+.+ ...+|||..+.+|+|+...
T Consensus       134 -~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          134 -TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             -CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred             -CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence             3445553    349864 2335666666788887643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.77  E-value=1.2e-20  Score=191.83  Aligned_cols=164  Identities=13%  Similarity=0.118  Sum_probs=109.4

Q ss_pred             eeEeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----eE-EEEcCccCCCCchhhhcCcEEEEcCCCCC
Q psy10858        105 VVLNNC-SLVVKRREFFVLLGASSAGKTTLLKAIVGLK--NISQ----GE-IWVLGGHPASIYHKTAGSKVGYMPQELAM  176 (457)
Q Consensus       105 ~aL~~v-s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll--~p~s----G~-I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L  176 (457)
                      ..||.+ ++.|++|++++|+||||||||||+++|+|..  +|++    |. |++++.+..      .++++++++|...+
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~  191 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL  191 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence            457776 7899999999999999999999999999998  6776    67 888886541      12457788888766


Q ss_pred             CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-------cCCceEEEeCC
Q psy10858        177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-------HKPQLIILDEP  249 (457)
Q Consensus       177 ~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-------~~P~lLILDEP  249 (457)
                      ++. ++.+|+.+...   .                           -|.+++|++.++++++       .+|++||+|||
T Consensus       192 ~~~-~v~~ni~~~~~---~---------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~  240 (349)
T 1pzn_A          192 DPD-EVLKHIYVARA---F---------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL  240 (349)
T ss_dssp             CHH-HHGGGEEEEEC---C---------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred             CHH-HHhhCEEEEec---C---------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence            544 55555433210   0                           1456677777777776       78999999999


Q ss_pred             CCCCCHHH------------HHHHHHHHHH-HHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecCh
Q psy10858        250 CVGVDPLV------------RKRMWDLLQV-FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       250 TsGLDp~~------------r~~i~~~i~~-~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~  305 (457)
                      |+++|+..            ..+++..+.. .++.|+|||+++|....... .+....+..|++++.+..
T Consensus       241 ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~  310 (349)
T 1pzn_A          241 TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT  310 (349)
T ss_dssp             STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred             hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence            99999852            3444544443 34569999999999876643 344555667776655543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.77  E-value=1.1e-21  Score=181.20  Aligned_cols=171  Identities=12%  Similarity=0.024  Sum_probs=99.3

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCccCCCCchhhh
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK-----NISQGEIWVLGGHPASIYHKTA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-----~p~sG~I~i~G~~~~~~~~~~~  163 (457)
                      +|+++|++++|+.   .++++  |++++|+.++|+|+||||||||++.|+|..     .|+.|.+.+.+....       
T Consensus         3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-------   70 (210)
T 1pui_A            3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-------   70 (210)
T ss_dssp             --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-------
T ss_pred             chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-------
Confidence            5899999999973   56777  899999999999999999999999999998     788887754321000       


Q ss_pred             cCcEEEEcCCCCCC----CCCC---HHHHHHHhhh---h-----------cCCCHHHHHHHHHHHHhHcCCCC--CCCCC
Q psy10858        164 GSKVGYMPQELAMF----GELT---IKETLNFFGM---I-----------YGMDESIWLFQMRKYSHVLKLPN--LERPV  220 (457)
Q Consensus       164 r~~IGyvpQ~~~L~----~~lT---V~EnL~~~~~---l-----------~g~~~~~~~~~~~~ll~~l~L~~--~~~~~  220 (457)
                      ...+-+ .+.+...    +.-.   .+..+..+..   .           .+.+  .....+..++...+++.  ...++
T Consensus        71 ~~~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~nK~  147 (210)
T 1pui_A           71 ADGKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLVLLTKA  147 (210)
T ss_dssp             ETTEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             cCCEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEEEEecc
Confidence            000111 1111110    0000   1111211111   0           0111  12223445556667753  35567


Q ss_pred             CCCChhHHHH-HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy10858        221 KYLSGGQKRR-LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRT  274 (457)
Q Consensus       221 ~~LSGGqkQR-lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~T  274 (457)
                      ..+|+||+|| +..|++++.+|+++++|||||++|+...+.+++.+....++|.|
T Consensus       148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            8899999999 89999999999999999999999999999999997666555543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.77  E-value=5.4e-20  Score=187.95  Aligned_cols=147  Identities=17%  Similarity=0.180  Sum_probs=105.4

Q ss_pred             EeeEEEeCCCCceeEeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCccCCCCchhhhc
Q psy10858         93 KNTEKEELKPSNVVLNNCSL-------VVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGGHPASIYHKTAG  164 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~-------~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~~~~~~~~~~~r  164 (457)
                      ..++.+|-......|+++.+       .+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ...   ..
T Consensus        92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~  167 (356)
T 3jvv_A           92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE  167 (356)
T ss_dssp             EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred             cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence            45555654323456667666       77899999999999999999999999999987 57776544333 221   22


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      ...++++|.......++..+                                               +||+||.++|++|
T Consensus       168 ~~~~~v~q~~~~~~~~~~~~-----------------------------------------------~La~aL~~~Pdvi  200 (356)
T 3jvv_A          168 SKKCLVNQREVHRDTLGFSE-----------------------------------------------ALRSALREDPDII  200 (356)
T ss_dssp             CSSSEEEEEEBTTTBSCHHH-----------------------------------------------HHHHHTTSCCSEE
T ss_pred             ccccceeeeeeccccCCHHH-----------------------------------------------HHHHHhhhCcCEE
Confidence            34556666543332233322                                               9999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCC
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKG  297 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~G  297 (457)
                      ++||||   |+..    ++.+....+.|.|||+|||+.+.+..+||++.|..|
T Consensus       201 llDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          201 LVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             EESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred             ecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence            999999   6555    444223346799999999999988779999888544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.76  E-value=1.6e-23  Score=192.39  Aligned_cols=172  Identities=13%  Similarity=0.121  Sum_probs=116.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD  196 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~  196 (457)
                      |++++|+||||||||||+++|++   +.+|.++++|.++..      ...+|+++|....+..+++++++.+.+..+...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   72 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWESDELLALTWKNITDLTVNFLLA   72 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999998   678999998865422      124577787665555568888887654322100


Q ss_pred             HHHHHHHHHHHHhHcCCCCCCCCCCCC--ChhHHHHHHHHH------HhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10858        197 ESIWLFQMRKYSHVLKLPNLERPVKYL--SGGQKRRLSFTI------AILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF  268 (457)
Q Consensus       197 ~~~~~~~~~~ll~~l~L~~~~~~~~~L--SGGqkQRlsLA~------ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~  268 (457)
                      .      ...+++.+......+...++  |+||+|++.++.      +++.+|+...+|+   ++|+..++. |+.+...
T Consensus        73 ~------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~  142 (189)
T 2bdt_A           73 Q------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK  142 (189)
T ss_dssp             T------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred             C------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence            0      00011111000000112234  889999988888      9999999988884   899999888 8887776


Q ss_pred             HhCCcEEEEEcCC-hhHHhc-cCeEEEEeCCeEEEecChhhhh
Q psy10858        269 VGKGRTVIMTTQY-IEEAND-ASEVAFLYKGRIIAQDSPDGFK  309 (457)
Q Consensus       269 ~~~g~TIIisTH~-~~ea~~-~dri~im~~GkI~~~gs~~~l~  309 (457)
                      .+.+.+||.+||. +++++. ||+|+  ++|++++.|+++-+.
T Consensus       143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            6668899999999 999976 89998  999999999987654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.8e-20  Score=195.26  Aligned_cols=165  Identities=14%  Similarity=0.099  Sum_probs=101.1

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+|+++||+++|++  +.+++++||+|      +|+|+||||||||+++|+|+..++.|   .+|..+... .......+
T Consensus        10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i   77 (418)
T 2qag_C           10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS   77 (418)
T ss_dssp             -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred             CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence            47999999999988  88999999998      99999999999999999999986655   122222111 11123568


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCc---eE
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQ---LI  244 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~---lL  244 (457)
                      +|++|+..++..+||.||+.+.....+   ......+...++           ..++.+++||++||||++.+|+   +|
T Consensus        78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~vlL  143 (418)
T 2qag_C           78 KVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQCCL  143 (418)
T ss_dssp             ECC------CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred             EEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence            999999988888999999877543221   111111111111           1345677889999999999999   99


Q ss_pred             EEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q psy10858        245 ILDEPC-VGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE  283 (457)
Q Consensus       245 ILDEPT-sGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~  283 (457)
                      ++|||| .|||+...    ++++.+. .+++||++.|-.+
T Consensus       144 ~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D  178 (418)
T 2qag_C          144 YFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD  178 (418)
T ss_dssp             EECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred             EEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence            999999 69999874    3333443 3788888877654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.74  E-value=2.5e-18  Score=167.96  Aligned_cols=153  Identities=14%  Similarity=0.103  Sum_probs=104.2

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI  192 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l  192 (457)
                      .+++|++++|+||||||||||++.++|...  .|.++ .|..+.      ....+.|+..+....   .+.+.+.-..  
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~------~~~~v~~~~~e~~~~---~~~~r~~~~g--   91 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL------PTGPVIYLPAEDPPT---AIHHRLHALG--   91 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC------CCCCEEEEESSSCHH---HHHHHHHHHH--
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC------CCccEEEEECCCCHH---HHHHHHHHHH--
Confidence            478999999999999999999999999664  57763 354331      124688887654320   1222221111  


Q ss_pred             cCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC--CCCHHHH---HHHHHHHH
Q psy10858        193 YGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV--GVDPLVR---KRMWDLLQ  266 (457)
Q Consensus       193 ~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs--GLDp~~r---~~i~~~i~  266 (457)
                      .....    .....+++.+.+.. .++.+..||+||+|++   ++++.+|++||+||||+  ++|+...   ..+++.+.
T Consensus        92 ~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~  164 (279)
T 1nlf_A           92 AHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME  164 (279)
T ss_dssp             TTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred             hhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence            12222    22344566777643 5778999999998765   68888999999999999  9998544   77777766


Q ss_pred             HH-HhCCcEEEEEcCChhHHh
Q psy10858        267 VF-VGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       267 ~~-~~~g~TIIisTH~~~ea~  286 (457)
                      .+ ++.|+|||++||+...+.
T Consensus       165 ~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          165 AIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHHHHHCCEEEEEEEC-----
T ss_pred             HHHHHcCCEEEEEecCCCccc
Confidence            65 456999999999987653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.71  E-value=2.3e-22  Score=204.63  Aligned_cols=177  Identities=12%  Similarity=0.089  Sum_probs=111.0

Q ss_pred             EeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----eEEEEcC----ccCCCCchhhhcCcEEEEcCCCCC
Q psy10858        107 LNNCSLVVKR--REFFVLLGASSAGKTTLLKAIVGLKNISQ----GEIWVLG----GHPASIYHKTAGSKVGYMPQELAM  176 (457)
Q Consensus       107 L~~vs~~I~~--Gei~gLlGpNGaGKTTLLk~L~Gll~p~s----G~I~i~G----~~~~~~~~~~~r~~IGyvpQ~~~L  176 (457)
                      .+.|+++|.+  |+.++|+||||||||||+|+|+|+++|++    |+|++++    .+. ....... ..|+|++|+..+
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~  235 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID  235 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH
Confidence            5679999999  99999999999999999999999999999    8877642    221 1111111 224444443322


Q ss_pred             CCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-cCCceEEEeC---CC--
Q psy10858        177 FGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-HKPQLIILDE---PC--  250 (457)
Q Consensus       177 ~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-~~P~lLILDE---PT--  250 (457)
                      + ..|+.+|+.++                      +....++.+..+|+|++|+..+++++. .+|++++|||   |+  
T Consensus       236 ~-~~t~~~nl~~~----------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~  292 (365)
T 1lw7_A          236 Y-AVRHSHKIAFI----------------------DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD  292 (365)
T ss_dssp             H-HHHHCSSEEEE----------------------SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred             H-HHhccCCEEEE----------------------eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence            1 12333332211                      000011223345667788888888774 6999999999   65  


Q ss_pred             ----CCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhh
Q psy10858        251 ----VGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKS  310 (457)
Q Consensus       251 ----sGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~  310 (457)
                          .++|+..|..+++.+..+ ++.|.+|+++||.-.+.+.++++.+|++  ++..++++++.+
T Consensus       293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~  355 (365)
T 1lw7_A          293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN  355 (365)
T ss_dssp             --------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred             CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence                589999999999996554 4458999999986333333666655543  444555555543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.70  E-value=3.2e-21  Score=195.25  Aligned_cols=175  Identities=12%  Similarity=0.152  Sum_probs=125.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhhc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~r  164 (457)
                      ++++++++++|+.  ..+|+++||++++|++++|+|+||||||||+++|+|++.|++|+|.+.|.++.....    ...+
T Consensus        29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~  106 (337)
T 2qm8_A           29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK  106 (337)
T ss_dssp             HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred             HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence            6889999999987  789999999999999999999999999999999999999999999999987643211    1235


Q ss_pred             CcEEEEcCCCCCCCCCC------------HHHHHHH-----------------------------hhhhcCCC-HHHH--
Q psy10858        165 SKVGYMPQELAMFGELT------------IKETLNF-----------------------------FGMIYGMD-ESIW--  200 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lT------------V~EnL~~-----------------------------~~~l~g~~-~~~~--  200 (457)
                      .++||++|++.+|...+            +.|.+..                             ...+.... .++.  
T Consensus       107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~  186 (337)
T 2qm8_A          107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG  186 (337)
T ss_dssp             GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred             hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence            67999999998875321            2222211                             00111110 0110  


Q ss_pred             -HHHHHHHHhHcCCCCCCC-CCCCCChhHHHHHHHHHHhhc------CCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858        201 -LFQMRKYSHVLKLPNLER-PVKYLSGGQKRRLSFTIAILH------KPQLIILDEPCVGVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       201 -~~~~~~ll~~l~L~~~~~-~~~~LSGGqkQRlsLA~ALl~------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~  269 (457)
                       .+.+.+....+.+...|. ....+|+|++|++..|++++.      .|++++    ||++|+...+.+|+.+....
T Consensus       187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence             011112222333333453 335689999999999999987      688887    89999999999999976643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.69  E-value=5.2e-19  Score=184.56  Aligned_cols=179  Identities=15%  Similarity=0.036  Sum_probs=117.3

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS  165 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~  165 (457)
                      ..+++++ ++.|++  .. |+++||+|++|++  +||+||||||||||+++|+|+.        ++|.++........++
T Consensus        15 ~~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~   82 (427)
T 2qag_B           15 RTVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ   82 (427)
T ss_dssp             --CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred             ceEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence            4567777 899987  66 9999999999999  9999999999999999999994        2333332211122345


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcC-CCH----HHHHHHHHHHHhHc-CCC----C-CCCCC-----------CCC
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYG-MDE----SIWLFQMRKYSHVL-KLP----N-LERPV-----------KYL  223 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g-~~~----~~~~~~~~~ll~~l-~L~----~-~~~~~-----------~~L  223 (457)
                      .+||++|++.+++.+||.||+.++..... ...    +.+..+...++... ++.    . .+.++           ..|
T Consensus        83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l  162 (427)
T 2qag_B           83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL  162 (427)
T ss_dssp             EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred             eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence            79999999999888999999876532110 000    11233444444443 332    0 12221           245


Q ss_pred             ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCC
Q psy10858        224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV-FVGKGRTVIMTTQY  281 (457)
Q Consensus       224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~-~~~~g~TIIisTH~  281 (457)
                      +-..   +.++++|..+++++++|||+..|.+.....+.+.++. +...|++|+.+|.+
T Consensus       163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            5554   7999999999999999999999999999999888664 77789999988865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.69  E-value=4.5e-20  Score=168.73  Aligned_cols=151  Identities=15%  Similarity=0.154  Sum_probs=98.4

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI  192 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l  192 (457)
                      .+++|++++|+||||||||||+++|+|.  ++.|.|.++|.++....  ..++.++|++|+..  +.++|.+++.+.+..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~   78 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ--QNRMIMQIAADVAGR   78 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence            5789999999999999999999999998  78899999987642111  11244678887654  356888988765432


Q ss_pred             cCCCHHHHHHHHHHHHhHcCCCC---CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10858        193 YGMDESIWLFQMRKYSHVLKLPN---LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       193 ~g~~~~~~~~~~~~ll~~l~L~~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~  269 (457)
                      ......  ...++.++..+++..   .+..+..+|+|++||+.+||++..+|+++        +|+..++.+++.++.+.
T Consensus        79 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~  148 (191)
T 1zp6_A           79 YAKEGY--FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG  148 (191)
T ss_dssp             HHHTSC--EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred             HhccCC--eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence            100000  000000011111111   13456789999999999999999999887        69988888888765443


Q ss_pred             hCCcEEEEEc
Q psy10858        270 GKGRTVIMTT  279 (457)
Q Consensus       270 ~~g~TIIisT  279 (457)
                      +.+..+|.++
T Consensus       149 ~~~~~~i~t~  158 (191)
T 1zp6_A          149 AFEHHVLPVS  158 (191)
T ss_dssp             GGGGGEEECT
T ss_pred             cccccEEECC
Confidence            3233344443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.68  E-value=3.5e-20  Score=177.71  Aligned_cols=143  Identities=17%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHH---cCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh-
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIV---GLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM-  191 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~---Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~-  191 (457)
                      ++++++|+||||||||||+++|+   |+..|++|+|.++|.+...    ..+..+++++|+..+++..++.+++..... 
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~  101 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST----EVGEMAKQYIEKSLLVPDHVITRLMMSELEN  101 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999   9999999999887754321    123345667888888888899999876321 


Q ss_pred             -------hcCCCHHHHHHHHHHHHh--HcC------------CCC-CCCCCCCCChhHHHHHHHHHHh-hcCCceEEEe-
Q psy10858        192 -------IYGMDESIWLFQMRKYSH--VLK------------LPN-LERPVKYLSGGQKRRLSFTIAI-LHKPQLIILD-  247 (457)
Q Consensus       192 -------l~g~~~~~~~~~~~~ll~--~l~------------L~~-~~~~~~~LSGGqkQRlsLA~AL-l~~P~lLILD-  247 (457)
                             +.+.+...  .++..+..  .++            +.. .++++.+|||    |+   +|+ +.+|++++|| 
T Consensus       102 ~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~  172 (246)
T 2bbw_A          102 RRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD  172 (246)
T ss_dssp             CTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred             cCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence                   22333222  12222221  122            111 3677889999    66   778 9999999999 


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHHHhC
Q psy10858        248 ---EPCVGVDPLVRKRMWDLLQVFVGK  271 (457)
Q Consensus       248 ---EPTsGLDp~~r~~i~~~i~~~~~~  271 (457)
                         |||+|+|+..++.+++.++.+.++
T Consensus       173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          173 VTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             TTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCcHHHHHHHHHHHHHh
Confidence               999999999999999987776554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.67  E-value=1.7e-17  Score=156.43  Aligned_cols=146  Identities=14%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CceEEEEcCccCCCCc-hhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVG--LKNI-----SQGEIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGELTIKE  184 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G--ll~p-----~sG~I~i~G~~~~~~~-~~~~r~~IGyvpQ~~~L~~~lTV~E  184 (457)
                      .|++|++++|+||||||||||++.|++  +.++     ..|.+++++....... .....+++|+.+|+        +.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~   91 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD   91 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence            489999999999999999999999999  5655     5678888775421110 01111223333221        111


Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHH-HHHHHHhh--cCCceEEEeCCCCCCCHH-----
Q psy10858        185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRR-LSFTIAIL--HKPQLIILDEPCVGVDPL-----  256 (457)
Q Consensus       185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQR-lsLA~ALl--~~P~lLILDEPTsGLDp~-----  256 (457)
                      |+                         .+      ...++..+... +.-+.+++  ++|+++++|||++.+|+.     
T Consensus        92 ~~-------------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~  140 (243)
T 1n0w_A           92 NV-------------------------AY------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRG  140 (243)
T ss_dssp             TE-------------------------EE------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------
T ss_pred             Ce-------------------------EE------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCc
Confidence            11                         00      11233333222 22222333  689999999999999985     


Q ss_pred             --H-----HHHHHHHH-HHHHhCCcEEEEEcCChhHHh--------------------ccCeEEEEeCC
Q psy10858        257 --V-----RKRMWDLL-QVFVGKGRTVIMTTQYIEEAN--------------------DASEVAFLYKG  297 (457)
Q Consensus       257 --~-----r~~i~~~i-~~~~~~g~TIIisTH~~~ea~--------------------~~dri~im~~G  297 (457)
                        .     ...++..+ +..++.|+|||+++|...+..                    .||++++|+.|
T Consensus       141 ~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          141 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence              3     23444443 334455999999999766532                    47999999865

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.66  E-value=2.6e-16  Score=145.40  Aligned_cols=83  Identities=18%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHhhc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeE
Q psy10858        216 LERPVKYLSGGQKRRLSFTIAILH----KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEV  291 (457)
Q Consensus       216 ~~~~~~~LSGGqkQRlsLA~ALl~----~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri  291 (457)
                      ..+.+..||||||||++||+||+.    .|+++||||||+|||+..++.++++++...+ +.++|++||+......||++
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i  136 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKI  136 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence            356788999999999999999974    4699999999999999999999999877644 57899999998877789998


Q ss_pred             EEE--eCCeE
Q psy10858        292 AFL--YKGRI  299 (457)
Q Consensus       292 ~im--~~GkI  299 (457)
                      +.+  .+|..
T Consensus       137 ~~v~~~~g~s  146 (173)
T 3kta_B          137 IGVSMRDGVS  146 (173)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEecCCEE
Confidence            855  46653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.66  E-value=3.8e-18  Score=174.12  Aligned_cols=154  Identities=16%  Similarity=0.083  Sum_probs=111.7

Q ss_pred             EEEeeEEE---eCCCCceeE---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC
Q psy10858         91 EGKNTEKE---ELKPSNVVL---------NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI  158 (457)
Q Consensus        91 ei~nlsk~---yg~~~~~aL---------~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~  158 (457)
                      ++++++++   |...+..+|         +++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|..  ..
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~  214 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL  214 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence            56666666   642112344         99999999999999999999999999999999999999999998743  21


Q ss_pred             chhhhcCcEEEEc-CCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHh
Q psy10858        159 YHKTAGSKVGYMP-QELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       159 ~~~~~r~~IGyvp-Q~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      .....++.++|++ |+..+                                             .++++..+|..|+.++
T Consensus       215 ~~~~~~~~v~~v~~q~~~~---------------------------------------------~~~~~~t~~~~i~~~l  249 (361)
T 2gza_A          215 FLPDHPNHVHLFYPSEAKE---------------------------------------------EENAPVTAATLLRSCL  249 (361)
T ss_dssp             CCTTCSSEEEEECC-------------------------------------------------------CCHHHHHHHHT
T ss_pred             CccccCCEEEEeecCcccc---------------------------------------------ccccccCHHHHHHHHH
Confidence            1122456799999 65431                                             0123334677888899


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCe
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGR  298 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~Gk  298 (457)
                      ..+|+.+++||+..       ..+++.++.+.....|++.++|..+....++|+..|..|.
T Consensus       250 ~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          250 RMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN  303 (361)
T ss_dssp             TSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred             hcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence            99999999999986       3456666665444567899999977445689999887764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.66  E-value=4.3e-19  Score=161.54  Aligned_cols=92  Identities=20%  Similarity=0.103  Sum_probs=77.2

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      ++.++++++|++  +.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++...  ... .+  |
T Consensus         8 ~~~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~-~~--~   79 (158)
T 1htw_A            8 IPDEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNI-AG--K   79 (158)
T ss_dssp             ECSHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEE-TT--E
T ss_pred             cCCHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccC-CC--c
Confidence            344567888887  78999999999999999999999999999999999999 9999999999876421  111 22  8


Q ss_pred             EcCCCCCCCCCCHHHHHHHhh
Q psy10858        170 MPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      ++|++.+| .+||.||+.+.+
T Consensus        80 ~~q~~~l~-~ltv~e~l~~~g   99 (158)
T 1htw_A           80 MIYHFDLY-RLADPEELEFMG   99 (158)
T ss_dssp             EEEEEECT-TCSCTTHHHHST
T ss_pred             ceeccccc-cCCcHHHHHHcC
Confidence            99999999 899999997643

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.65  E-value=1.2e-17  Score=171.31  Aligned_cols=129  Identities=14%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNIS-QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE  184 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~-sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E  184 (457)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. .   ..+..++|++|..          
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~----------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE----------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------
Confidence            456655  7999999999999999999999999999998 899987776543 1   2356788999841          


Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH
Q psy10858        185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL  264 (457)
Q Consensus       185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~  264 (457)
                                                +++.     +..|      +.+|++||..+|++|++|||+   |+..   ++..
T Consensus       191 --------------------------~g~~-----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~---~~~~  227 (372)
T 2ewv_A          191 --------------------------VGED-----TKSF------ADALRAALREDPDVIFVGEMR---DLET---VETA  227 (372)
T ss_dssp             --------------------------BTTT-----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH---HHHH
T ss_pred             --------------------------cCCC-----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH---HHHH
Confidence                                      2221     2334      469999999999999999999   7665   3444


Q ss_pred             HHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        265 LQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       265 i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      ++.. ..|.+|+.|+|+.+....+||++.|
T Consensus       228 l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l  256 (372)
T 2ewv_A          228 LRAA-ETGHLVFGTLHTNTAIDTIHRIVDI  256 (372)
T ss_dssp             HHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred             HHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence            5443 5689999999996633446776544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.64  E-value=1.5e-15  Score=140.94  Aligned_cols=153  Identities=15%  Similarity=0.022  Sum_probs=97.2

Q ss_pred             ceeEeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        104 NVVLNNCSL-VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~-~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ...|+.+.. .+++|++++|+||||||||||++.|++  .+..+.+++..                    +..    ++.
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~--------------------~~~----~~~   59 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT--------------------EGG----FSP   59 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES--------------------SCC----CCH
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC--------------------CCC----CCH
Confidence            345666665 689999999999999999999999999  33333333322                    211    111


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhH--HHHHHHHHHhhcC-CceEEEeCCCCCCCHHHH-
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQ--KRRLSFTIAILHK-PQLIILDEPCVGVDPLVR-  258 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq--kQRlsLA~ALl~~-P~lLILDEPTsGLDp~~r-  258 (457)
                       +.+.-.....+...+.       +++.+       .+.++|+++  +|+++.+++++.+ |+++|+||||+++|+... 
T Consensus        60 -~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~  124 (220)
T 2cvh_A           60 -ERLVQMAETRGLNPEE-------ALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR  124 (220)
T ss_dssp             -HHHHHHHHTTTCCHHH-------HHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred             -HHHHHHHHhcCCChHH-------HhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence             1111111112332211       12222       123445554  5688888999986 999999999999997432 


Q ss_pred             -------HHHHHHHHHH-HhCCcEEEEEcCChh-------------HHh-ccCeEEEEeCC
Q psy10858        259 -------KRMWDLLQVF-VGKGRTVIMTTQYIE-------------EAN-DASEVAFLYKG  297 (457)
Q Consensus       259 -------~~i~~~i~~~-~~~g~TIIisTH~~~-------------ea~-~~dri~im~~G  297 (457)
                             ..+++.++.+ ++.|+|||+++|...             .++ .||++++|+..
T Consensus       125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence                   3344444444 345899999999876             344 48999999754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.64  E-value=8.9e-18  Score=177.92  Aligned_cols=183  Identities=11%  Similarity=0.073  Sum_probs=119.2

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc------hhhhcCcEEEEcCCCCCCCCC
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY------HKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~------~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      .+++||++++|++++|+|+||||||||+++|+|++++++|+|.+.|.+.....      ....+++|+|++|+..+++.+
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            46899999999999999999999999999999999999999999887764321      111356799999999888889


Q ss_pred             CHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhh-cCC-ceEEEeCCCCCCCHHHH
Q psy10858        181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAIL-HKP-QLIILDEPCVGVDPLVR  258 (457)
Q Consensus       181 TV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl-~~P-~lLILDEPTsGLDp~~r  258 (457)
                      ++++|+.+... .+.+-        -+++..|..  +.. ..|-.-.+|++.+++++. ..| ++||...||+|.|....
T Consensus       363 tV~e~l~~a~~-~~~Dv--------VLIDTaGrl--~~~-~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~  430 (503)
T 2yhs_A          363 VIFDAIQAAKA-RNIDV--------LIADTAGRL--QNK-SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ  430 (503)
T ss_dssp             HHHHHHHHHHH-TTCSE--------EEECCCCSC--CCH-HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH
T ss_pred             HHHHHHHHHHh-cCCCE--------EEEeCCCcc--chh-hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH
Confidence            99999987532 22110        011111211  110 112223357888888774 457 45555559999765522


Q ss_pred             HHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEe--CCeEEEecChhhh
Q psy10858        259 KRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLY--KGRIIAQDSPDGF  308 (457)
Q Consensus       259 ~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~--~GkI~~~gs~~~l  308 (457)
                            ++.+. .-|.|.||+|| ++.... ...+.++.  +..|.+.|+.+.+
T Consensus       431 ------ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v  477 (503)
T 2yhs_A          431 ------AKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI  477 (503)
T ss_dssp             ------HHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred             ------HHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence                  22222 34889999999 555322 33333333  3345555555444

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.63  E-value=8.4e-20  Score=182.99  Aligned_cols=157  Identities=14%  Similarity=0.078  Sum_probs=106.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC--------CCCceEEEEcCccCCCCc---------------hhhhcCcEEEE---c
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK--------NISQGEIWVLGGHPASIY---------------HKTAGSKVGYM---P  171 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll--------~p~sG~I~i~G~~~~~~~---------------~~~~r~~IGyv---p  171 (457)
                      ++++|+|+||||||||+|+|.|+.        .|+.|+|.++|..+....               ....++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            689999999999999999999997        789999999998765421               11233457877   6


Q ss_pred             CCCCCCCCCCHHHHHHHhh--hh----cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEE
Q psy10858        172 QELAMFGELTIKETLNFFG--MI----YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLII  245 (457)
Q Consensus       172 Q~~~L~~~lTV~EnL~~~~--~l----~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLI  245 (457)
                      |+..++++.++.||..+..  .+    +..+......++..++..+++....+...+||+||+||+..+++++.+|+++ 
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~-  163 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA-  163 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence            8877767778888765421  10    0000000000111223344443321222379999999999999999999988 


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHh
Q psy10858        246 LDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAN  286 (457)
Q Consensus       246 LDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~  286 (457)
                       |||         +.+++.++.+ ..+.||+++||+..+++
T Consensus       164 -de~---------~~l~~~l~~l-~~~~~ii~~sh~~~~~~  193 (318)
T 1nij_A          164 -GEA---------EKLHERLARI-NARAPVYTVTHGDIDLG  193 (318)
T ss_dssp             -SCT---------HHHHHHHHHH-CSSSCEEECCSSCCCGG
T ss_pred             -CHH---------HHHHHHHHHh-CCCCeEEEecccCCCHH
Confidence             999         6777777665 46899999999754443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.61  E-value=1.4e-16  Score=162.96  Aligned_cols=121  Identities=16%  Similarity=0.174  Sum_probs=93.3

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEc-CccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN-ISQGEIWVL-GGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-p~sG~I~i~-G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      -++++++. .+|++++|+||||||||||+++|+|+.. |++|+|.+. |....    ....+.++|++|+..+++..+|+
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~  279 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR  279 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence            46777775 4899999999999999999999999999 999999986 54432    12356799999999999888998


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHh
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      ++     .+++++.++...++.++++.+++.. .+..+.+|| ||+||++||+++
T Consensus       280 e~-----~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          280 EF-----GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             TC-----CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             Hh-----hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            84     2346677777777888899999854 789999999 999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.56  E-value=4.8e-16  Score=157.11  Aligned_cols=164  Identities=10%  Similarity=0.048  Sum_probs=110.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh------hhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK------TAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~------~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......      ..+..+.|++|...+++.++|++|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            3478999999999999999999999999999999999999887543211      1223466999999999999999999


Q ss_pred             HHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858        187 NFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL  265 (457)
Q Consensus       187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i  265 (457)
                      .+.... +.+.        -+++..+... ....+.+||       .+++++..++.+++||.+| |.      .+.+.+
T Consensus       205 ~~~~~~-~~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~~------~~~~~~  261 (328)
T 3e70_C          205 QHAKAR-GIDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA-GN------AIVEQA  261 (328)
T ss_dssp             HHHHHH-TCSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-TT------HHHHHH
T ss_pred             HHHHhc-cchh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-HH------HHHHHH
Confidence            764221 1100        0122223211 122233333       4899999999999999555 43      344443


Q ss_pred             HHHH-hCCcEEEEEcCChhHHh---------c-cCeEEEEeCCeE
Q psy10858        266 QVFV-GKGRTVIMTTQYIEEAN---------D-ASEVAFLYKGRI  299 (457)
Q Consensus       266 ~~~~-~~g~TIIisTH~~~ea~---------~-~dri~im~~GkI  299 (457)
                      +.+. +.+.|+|++||.-+.+.         . .-.|.++..|+-
T Consensus       262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~  306 (328)
T 3e70_C          262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG  306 (328)
T ss_dssp             HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred             HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence            4433 45899999999543211         1 235777776664

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.54  E-value=9.3e-18  Score=178.92  Aligned_cols=171  Identities=18%  Similarity=0.248  Sum_probs=113.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC--------
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA--------  175 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~--------  175 (457)
                      ..+++++++.|++|++++|+||||||||||+++|+|+++|++|.|.+.|..-....   ....+++..|...        
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~  323 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMY  323 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHH
Confidence            45789999999999999999999999999999999999999999999886421111   1233555544322        


Q ss_pred             --------------CCCCCCHHHHHHHhhhhc-CCC------HHHHHHHHHHHHhH-cCCCC-----CC---CCCCCCCh
Q psy10858        176 --------------MFGELTIKETLNFFGMIY-GMD------ESIWLFQMRKYSHV-LKLPN-----LE---RPVKYLSG  225 (457)
Q Consensus       176 --------------L~~~lTV~EnL~~~~~l~-g~~------~~~~~~~~~~ll~~-l~L~~-----~~---~~~~~LSG  225 (457)
                                    ++.+++..|++.++.... |..      .....+.+..+... ++++.     .+   .....+|+
T Consensus       324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~  403 (511)
T 2oap_1          324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG  403 (511)
T ss_dssp             HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred             HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence                          234666666665543332 310      01112222222211 22211     12   23446899


Q ss_pred             hHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EcCChhHHhc-cC
Q psy10858        226 GQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM--TTQYIEEAND-AS  289 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi--sTH~~~ea~~-~d  289 (457)
                      ||+||+++|.          + | |+||||..++.+|+.+..+.+.|.|+++  +||+++++.. |+
T Consensus       404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            9999987652          1 7 9999999988888876555566889985  9999999864 53

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.54  E-value=1.7e-16  Score=158.03  Aligned_cols=122  Identities=10%  Similarity=0.004  Sum_probs=87.9

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCCCC-----CCCCHH
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELAMF-----GELTIK  183 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L~-----~~lTV~  183 (457)
                      +++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|++.+........+.+||++|.|.+.     +.+|+ 
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            345679999999999999999999999 99999999999   888775432211224689999998653     67899 


Q ss_pred             HHH--HHh------hhhcC-CCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHH
Q psy10858        184 ETL--NFF------GMIYG-MDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTI  235 (457)
Q Consensus       184 EnL--~~~------~~l~g-~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~  235 (457)
                      |++  .|.      .++.+ ....+...++.++++.++|..  .+++++.|||.++|++.|||
T Consensus       238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            887  332      12333 223334566888999999963  57889999999999999986

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.54  E-value=5.6e-15  Score=134.36  Aligned_cols=113  Identities=14%  Similarity=0.144  Sum_probs=78.4

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      +|++++|+.++|.||||+|||||+++|+|.+.|++|..                  +.|          +++.+.+... 
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~----------~~~~~~~~~~-   82 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYF----------FDTKDLIFRL-   82 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCE----------EEHHHHHHHH-
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEE----------EEHHHHHHHH-
Confidence            35677899999999999999999999999987655521                  111          2333332211 


Q ss_pred             hhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q psy10858        191 MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFV  269 (457)
Q Consensus       191 ~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~  269 (457)
                                    ........          ..        -+...+.+|++||||||++ ++|+..+..+++++....
T Consensus        83 --------------~~~~~~~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~  130 (180)
T 3ec2_A           83 --------------KHLMDEGK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY  130 (180)
T ss_dssp             --------------HHHHHHTC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             --------------HHHhcCch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH
Confidence                          01010000          00        1122344899999999985 999999999999988777


Q ss_pred             hCCcEEEEEcCChhH
Q psy10858        270 GKGRTVIMTTQYIEE  284 (457)
Q Consensus       270 ~~g~TIIisTH~~~e  284 (457)
                      ++|+++|++||...+
T Consensus       131 ~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A          131 NNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HTTCEEEEECCCCSC
T ss_pred             HcCCCEEEEcCCChh
Confidence            789999999998643

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.54  E-value=2e-14  Score=146.54  Aligned_cols=77  Identities=23%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             CCCCCCChhHHHHH------HHHHHhhcC-CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        218 RPVKYLSGGQKRRL------SFTIAILHK-PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       218 ~~~~~LSGGqkQRl------sLA~ALl~~-P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                      +++.+||||||||+      ++|+||+.+ |++|||||||+|||+..+..+++.+..+. .+.+||+|||+++....||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRELEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGGGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHHHhhCCE
Confidence            55679999999988      567889999 99999999999999999999999987753 45789999999875556999


Q ss_pred             EEEEe
Q psy10858        291 VAFLY  295 (457)
Q Consensus       291 i~im~  295 (457)
                      +++|+
T Consensus       355 ~~~l~  359 (371)
T 3auy_A          355 IINVK  359 (371)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.52  E-value=6.2e-16  Score=161.03  Aligned_cols=155  Identities=19%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      -++++|+++.|++++|+|+|||||||||++|+|..+      .+.+.+...     ....+|+++++..  ..+++.++.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~--~~~~l~Dtp  213 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE--ERFTLADIP  213 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS--CEEEEEECC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc--ceEEEEecc
Confidence            479999999999999999999999999999999854      233433221     2234666665430  111111111


Q ss_pred             HHh---hhhcCCCHHHHH--HHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHH
Q psy10858        187 NFF---GMIYGMDESIWL--FQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRM  261 (457)
Q Consensus       187 ~~~---~~l~g~~~~~~~--~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i  261 (457)
                      .+.   ....++.....+  ++++.++..+++.  ++++.+||+|++|++++|++|+..|.+|+|    +.+|+..+..+
T Consensus       214 Gli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~  287 (416)
T 1udx_A          214 GIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAV  287 (416)
T ss_dssp             CCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHH
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHH
Confidence            100   011122221111  1122233344443  567788999999999999999999999999    99999877444


Q ss_pred             HHHHHHHHhCCcEEEEEcC
Q psy10858        262 WDLLQVFVGKGRTVIMTTQ  280 (457)
Q Consensus       262 ~~~i~~~~~~g~TIIisTH  280 (457)
                      .++.+.+.+.|.++|++|.
T Consensus       288 ~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          288 KALADALAREGLAVLPVSA  306 (416)
T ss_dssp             HHHHHHHHTTTSCEEECCT
T ss_pred             HHHHHHHHhcCCeEEEEEC
Confidence            4445555556777766553

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.51  E-value=5.1e-18  Score=170.59  Aligned_cols=178  Identities=17%  Similarity=0.127  Sum_probs=120.7

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCccCC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRR-------EFFVLLGASSAGKTTLLKAIVGLK----NISQGEIWVLGGHPA  156 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~G-------ei~gLlGpNGaGKTTLLk~L~Gll----~p~sG~I~i~G~~~~  156 (457)
                      .+++.++++..||.  ..+++++++.|++|       +.++|.||||+|||||+++|+|.+    .+++|.+...+.++.
T Consensus        17 ~~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~   94 (334)
T 1in4_A           17 QFLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA   94 (334)
T ss_dssp             CTTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred             HHcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence            35667788888887  78999999999887       899999999999999999999998    677777766554432


Q ss_pred             CCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCC----HHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHH
Q psy10858        157 SIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD----ESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS  232 (457)
Q Consensus       157 ~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~----~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRls  232 (457)
                      .......+..|+|++|.+.+.+  ++.|++......++..    .....+.+...+..+.+..+.+.+..||+|++||+.
T Consensus        95 ~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~  172 (334)
T 1in4_A           95 AILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFG  172 (334)
T ss_dssp             HHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCS
T ss_pred             HHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcC
Confidence            1101112457999999888765  7888885433333321    112223344445555553356778899999999986


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCe
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASE  290 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dr  290 (457)
                      ++                .+|||...+.++++++... ..+     ++|+.+.+.. +++
T Consensus       173 l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          173 II----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             EE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             ce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence            54                7889999999999976654 334     3688776654 443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.51  E-value=1e-14  Score=130.88  Aligned_cols=92  Identities=17%  Similarity=0.324  Sum_probs=72.6

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      +|+++     +|+.++|+||||+|||||+++|+|...+ +|  .+++.+.+...        .                 
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------~-----------------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------T-----------------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------C-----------------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------H-----------------
Confidence            45555     8999999999999999999999999876 46  55555433211        0                 


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                                                                          +++.+|++|+||||++ +|+..++.+++
T Consensus        79 ----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~  105 (149)
T 2kjq_A           79 ----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS  105 (149)
T ss_dssp             ----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred             ----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence                                                                2356899999999998 66666889999


Q ss_pred             HHHHHHhCCcE-EEEEcCC
Q psy10858        264 LLQVFVGKGRT-VIMTTQY  281 (457)
Q Consensus       264 ~i~~~~~~g~T-IIisTH~  281 (457)
                      ++....++|++ +|++||.
T Consensus       106 li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A          106 IFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             HHHHHHHHTCCEEEEEESS
T ss_pred             HHHHHHHcCCcEEEEECCC
Confidence            98887777888 8889885

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.51  E-value=8.3e-18  Score=175.22  Aligned_cols=150  Identities=11%  Similarity=0.007  Sum_probs=104.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc----hhhhc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY----HKTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~----~~~~r  164 (457)
                      .++++++.+.|+.  ..+|+++ + .++|++++|+|||||||||||++|+|+++|++|+|.+.|.++....    ....+
T Consensus       143 ~~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~  218 (418)
T 1p9r_A          143 RLDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN  218 (418)
T ss_dssp             CCCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred             CCCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence            4556666666655  5678888 5 3899999999999999999999999999999999999887763211    11223


Q ss_pred             CcEEEEc---------CCCCC--CCC----CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHhHcCCCCCCCCCCCCCh
Q psy10858        165 SKVGYMP---------QELAM--FGE----LTIKETLNFFGMIY----GMDESIWLFQMRKYSHVLKLPNLERPVKYLSG  225 (457)
Q Consensus       165 ~~IGyvp---------Q~~~L--~~~----lTV~EnL~~~~~l~----g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSG  225 (457)
                      +.+|+.+         |++.+  +.+    .|+.+++.+...-+    .+........+. .+..+++... ..+.+|||
T Consensus       219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~-~~~~~LSg  296 (418)
T 1p9r_A          219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPF-LISSSLLG  296 (418)
T ss_dssp             GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHH-HHHHHEEE
T ss_pred             cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHH-HHHHHHHH
Confidence            4566655         88865  344    68888887643210    011111122222 3456677542 36788999


Q ss_pred             hHHHHHHHHHHhhcCCceEEE
Q psy10858        226 GQKRRLSFTIAILHKPQLIIL  246 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLIL  246 (457)
                      ||+||  ||+||+.+|++..-
T Consensus       297 g~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          297 VLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             EEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHH--hhhhhcCCCCccCC
Confidence            99999  99999999999763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.50  E-value=3e-17  Score=169.66  Aligned_cols=169  Identities=14%  Similarity=0.112  Sum_probs=123.7

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCceEEEEcCccCCCCc-hhhhcCcE---EEEcCCCCC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVG------------LKNISQGEIWVLGGHPASIY-HKTAGSKV---GYMPQELAM  176 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G------------ll~p~sG~I~i~G~~~~~~~-~~~~r~~I---GyvpQ~~~L  176 (457)
                      ++++|+.+||+|+||||||||+++|+|            .+.|++|.|.+.|..+.... ....++.+   .++++.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999            66799999999875431100 01112233   478899998


Q ss_pred             CCCCCHHHHH--HHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCC--ceEEEeCCCCC
Q psy10858        177 FGELTIKETL--NFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKP--QLIILDEPCVG  252 (457)
Q Consensus       177 ~~~lTV~EnL--~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P--~lLILDEPTsG  252 (457)
                      +...+..|++  .|...+++.+         .++..++.. .+..+..+||++            +|  +++++|||+.+
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ildeel~~  153 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF-DDAEIIHVEGDV------------DPIRDLSIIVDELLI  153 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC-CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc-ccceeeeecccc------------CcchhhhhchhhhHH
Confidence            8888876655  4444333221         122222221 245555677764            89  99999999999


Q ss_pred             CCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEE-EEeCC-eEEEecCh
Q psy10858        253 VDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVA-FLYKG-RIIAQDSP  305 (457)
Q Consensus       253 LDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~-im~~G-kI~~~gs~  305 (457)
                      +|+..+++.|+.++.. .+.|.||+  +|++.++.. |+++. +|++| +++..|+.
T Consensus       154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            9999999999998776 66677764  999999865 99998 99999 88776654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.49  E-value=3e-14  Score=142.10  Aligned_cols=137  Identities=11%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             EEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC-CH
Q psy10858        120 FVLLGASSAGKTTLLKAIVG-LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM-DE  197 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G-ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~-~~  197 (457)
                      +.|.||||+||||++++|+| +..|+.|.+.++|.+.....  ..+..+++++|...+.-..+-          .+. ..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  106 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD----------MGNNDR  106 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC--------------CCH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh----------cCCcch
Confidence            89999999999999999999 88999999999887654321  124678999987654211110          011 11


Q ss_pred             HHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy10858        198 SIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM  277 (457)
Q Consensus       198 ~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIi  277 (457)
                      ...++.+.++.....+   +... +|||           +..+|+++|+|||++ ||+.++..+++.++.. ..++++|+
T Consensus       107 ~~~~~~i~~~~~~~~~---~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~-~~~~~~Il  169 (354)
T 1sxj_E          107 IVIQELLKEVAQMEQV---DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIM  169 (354)
T ss_dssp             HHHHHHHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEE
T ss_pred             HHHHHHHHHHHHhccc---cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh-cCCCEEEE
Confidence            1223333333222222   2222 5676           788999999999999 9999999999998775 35789999


Q ss_pred             EcCChhHH
Q psy10858        278 TTQYIEEA  285 (457)
Q Consensus       278 sTH~~~ea  285 (457)
                      +||+++.+
T Consensus       170 ~t~~~~~l  177 (354)
T 1sxj_E          170 VCDSMSPI  177 (354)
T ss_dssp             EESCSCSS
T ss_pred             EeCCHHHH
Confidence            99998754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.49  E-value=8.9e-17  Score=148.09  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCc---hhhhc-CcEE----EEcCCCCCCCCCCHHHHH
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIY---HKTAG-SKVG----YMPQELAMFGELTIKETL  186 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~---~~~~r-~~IG----yvpQ~~~L~~~lTV~EnL  186 (457)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++...+   ....| +.+|    +++|+..+|    +.+  
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~--   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR--   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence            589999999999999999999999998   899999998754322   22233 3466    889987655    110  


Q ss_pred             HHhhhhcCCCHHHHHHHHHHHHhH-cCCCCCCCC-CCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        187 NFFGMIYGMDESIWLFQMRKYSHV-LKLPNLERP-VKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       187 ~~~~~l~g~~~~~~~~~~~~ll~~-l~L~~~~~~-~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                             + ..+ ....+.++++. +.  ..|.. ...|||||+||++||||++.+|++.
T Consensus        77 -------~-~~~-~~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           77 -------V-SEE-EGNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             -------C-CHH-HHTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             -------C-Chh-hhhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccCCCccC
Confidence                   0 011 11123333333 32  12221 2249999999999999999999873

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.46  E-value=1.9e-16  Score=157.80  Aligned_cols=140  Identities=11%  Similarity=0.059  Sum_probs=103.2

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCce
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVV-------------------KRREFFVLLGASSAGKTTLLKAIVGLKN--ISQG  146 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I-------------------~~Gei~gLlGpNGaGKTTLLk~L~Gll~--p~sG  146 (457)
                      .+|++++|++.|+    .+++++++.+                   ++|+++||+||||||||||+++|+|++.  |++|
T Consensus        36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G  111 (308)
T 1sq5_A           36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR  111 (308)
T ss_dssp             TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred             cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence            4789999999994    4789999988                   9999999999999999999999999988  9999


Q ss_pred             EEEE---cCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCC
Q psy10858        147 EIWV---LGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL  223 (457)
Q Consensus       147 ~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~L  223 (457)
                      +|.+   +|....   . ..++.+|++ |...+++.+|+.+++.+...++.-..            .+..+..+     .
T Consensus       112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------~i~~P~~~-----~  169 (308)
T 1sq5_A          112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------NVTAPVYS-----H  169 (308)
T ss_dssp             CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------CEEECCEE-----T
T ss_pred             eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------ceeccccc-----c
Confidence            9999   876542   1 223568888 88888888999999987765543110            01112111     1


Q ss_pred             ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH
Q psy10858        224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDP  255 (457)
Q Consensus       224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp  255 (457)
                      +.+  +|+..+.+.+.+|+++|+|.|....++
T Consensus       170 ~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          170 LIY--DVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             TTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             ccc--CcccccceecCCCCEEEECchhhCCCc
Confidence            211  233333345678999999999998874

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.44  E-value=2e-14  Score=148.95  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCce-----EEEEcCccCCCCc-hhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLK--AIVGLKNISQG-----EIWVLGGHPASIY-HKTAGSKVGYMPQELAMFGELTIKE  184 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk--~L~Gll~p~sG-----~I~i~G~~~~~~~-~~~~r~~IGyvpQ~~~L~~~lTV~E  184 (457)
                      -|++|++++|+||||||||||++  ++.++.+++.|     .+++++....... .....+++|+.+|        ++.+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle  245 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN  245 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence            68999999999999999999999  45677776544     7777765421110 0111122333222        2222


Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCCh-hHHHHHHHHHHh--hcCCceEEEeCCCCCCCHHHH---
Q psy10858        185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSG-GQKRRLSFTIAI--LHKPQLIILDEPCVGVDPLVR---  258 (457)
Q Consensus       185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSG-GqkQRlsLA~AL--l~~P~lLILDEPTsGLDp~~r---  258 (457)
                      |+.+.                               ...++ .+.+.+.-+.++  ..+|+++++|||++.+|+...   
T Consensus       246 ni~~~-------------------------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g  294 (400)
T 3lda_A          246 NVAYA-------------------------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRG  294 (400)
T ss_dssp             TEEEE-------------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------C
T ss_pred             cEEEe-------------------------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCcc
Confidence            22110                               01111 122222223333  257999999999999997532   


Q ss_pred             ---------HHHHHHHHHH-HhCCcEEEEEcCChh-------------------HHhc-cCeEEEEeCCe
Q psy10858        259 ---------KRMWDLLQVF-VGKGRTVIMTTQYIE-------------------EAND-ASEVAFLYKGR  298 (457)
Q Consensus       259 ---------~~i~~~i~~~-~~~g~TIIisTH~~~-------------------ea~~-~dri~im~~Gk  298 (457)
                               ..+++.+..+ ++.|+|||+|+|...                   .+.. +|.+++|+.++
T Consensus       295 ~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          295 ELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence                     4556665544 445999999999831                   1233 78888887653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.43  E-value=1.6e-17  Score=163.17  Aligned_cols=144  Identities=17%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC-CCCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL-AMFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~-~L~~~lTV  182 (457)
                      ..+++++++++++|  ++|+||||||||||+|+|+|...+  |.|.++|.++.........+.+++++|.. ..++.+++
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~  108 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF  108 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence            56899999999999  999999999999999999999877  79999998775432223345688888875 45566667


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC----------
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV----------  251 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs----------  251 (457)
                      .|++...+..++..      ...      .+.. .++.+.+|||||+||+.+++|+.++|++|  |||+.          
T Consensus       109 ~Deid~~~~~r~~~------~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~  174 (274)
T 2x8a_A          109 FDEVDALCPRRSDR------ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF  174 (274)
T ss_dssp             EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred             eehhhhhhcccCCC------cch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence            77765433221110      000      0111 35567789999999999999999999985  99863          


Q ss_pred             --CCCHHHHHHHHHHH
Q psy10858        252 --GVDPLVRKRMWDLL  265 (457)
Q Consensus       252 --GLDp~~r~~i~~~i  265 (457)
                        --|...|..+|+.+
T Consensus       175 ~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          175 VGLPPPADRLAILKTI  190 (274)
T ss_dssp             CCSCCHHHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHH
Confidence              34788888888763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.42  E-value=1.5e-15  Score=151.01  Aligned_cols=110  Identities=17%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCC-------------
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELA-------------  175 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~-------------  175 (457)
                      |++.+|++++|+||||||||||+++|+|+.+|++|+|.+   +|+++.........+.+||++|.+.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            556789999999999999999999999999999999999   8887754322222246899999985             


Q ss_pred             ---CCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-C-CCCCCCCCCh
Q psy10858        176 ---MFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLP-N-LERPVKYLSG  225 (457)
Q Consensus       176 ---L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~-~~~~~~~LSG  225 (457)
                         +|+++|+ +|+.|.....   ..+...++.++++.++|+ . .+++++.||.
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence               5888999 9888753211   122345678889999995 3 5777888874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.42  E-value=3.9e-15  Score=147.82  Aligned_cols=125  Identities=17%  Similarity=0.110  Sum_probs=87.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh----
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG----  190 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~----  190 (457)
                      +++.++||.|++|||||||.+.|.+++.+. |      .         .++.+.+|+|+..+++. ++++|+.+..    
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~   91 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK   91 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence            468899999999999999999999998763 2      0         02345666999987754 8888987642    


Q ss_pred             --hhcCCCHHHHHHHHHHHHhHcCCC------C---CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858        191 --MIYGMDESIWLFQMRKYSHVLKLP------N---LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL  256 (457)
Q Consensus       191 --~l~g~~~~~~~~~~~~ll~~l~L~------~---~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~  256 (457)
                        ..+|.+.......+.+.++.+...      .   ...+..++||||+||+++|++...+|+|||+||||+++|+.
T Consensus        92 l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           92 LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             GGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence              112333222223344444444322      1   23455789999999999973333389999999999999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.39  E-value=4.7e-17  Score=151.88  Aligned_cols=153  Identities=18%  Similarity=0.136  Sum_probs=84.0

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKN-------------ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL  180 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~-------------p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~l  180 (457)
                      +++|++++|+||||||||||+++|+|+++             |..|+  ++|.+....+....++.+   +|+..++ ..
T Consensus         1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~   74 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HA   74 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-ee
Confidence            35899999999999999999999999875             55565  345433222222222222   3333222 12


Q ss_pred             CHHHHHHHhhhhcCCCHHHHHHHHHHH-HhHcCCCCCCCCCCCCChhHHH----HHHHHH-HhhcCCceEEEeCCCCCCC
Q psy10858        181 TIKETLNFFGMIYGMDESIWLFQMRKY-SHVLKLPNLERPVKYLSGGQKR----RLSFTI-AILHKPQLIILDEPCVGVD  254 (457)
Q Consensus       181 TV~EnL~~~~~l~g~~~~~~~~~~~~l-l~~l~L~~~~~~~~~LSGGqkQ----RlsLA~-ALl~~P~lLILDEPTsGLD  254 (457)
                      ++.+|      ++|.+.++..+.++.. ...+.+.         ..|-++    ++ .|+ +++.+|++++|||+|+++|
T Consensus        75 ~~~~n------~~g~~~~~i~~~~~~~~~~~~~~~---------~~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d  138 (198)
T 1lvg_A           75 EFSGN------LYGTSKEAVRAVQAMNRICVLDVD---------LQGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRN  138 (198)
T ss_dssp             EETTE------EEEEEHHHHHHHHHTTCEEEEECC---------HHHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred             eecCc------cCCCCHHHHHHHHHcCCcEEEECC---------HHHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence            22222      3444444433332210 0001110         011111    12 455 7888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEe
Q psy10858        255 PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLY  295 (457)
Q Consensus       255 p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~  295 (457)
                      ..+.+.|.+.+....++    +..+|  .. ..+|+|++++
T Consensus       139 ~~~e~~i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd  172 (198)
T 1lvg_A          139 TETEESLAKRLAAARTD----MESSK--EP-GLFDLVIIND  172 (198)
T ss_dssp             CSCHHHHHHHHHHHHHH----TTGGG--ST-TTCSEEEECS
T ss_pred             CCCHHHHHHHHHHHHHH----HHHhh--cc-CCceEEEECC
Confidence            98888888876655432    23345  11 5589887765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.35  E-value=1.2e-14  Score=133.69  Aligned_cols=123  Identities=19%  Similarity=0.195  Sum_probs=75.5

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      |+++++|+++||+||||||||||+++|+|+++    .+.+.+...........+..++|+||++.+++.+++.+++.+.+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA   76 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence            67889999999999999999999999999974    57777765543322223457899999988888777777664433


Q ss_pred             hh----cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        191 MI----YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       191 ~l----~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                      ..    ++.+.+.    +.++++.-...-.+        +..|-+..++....++.+++++.|
T Consensus        77 ~~~~~~~~~~~~~----i~~~l~~g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~  127 (205)
T 3tr0_A           77 TIYERHYGTEKDW----VLRQLKAGRDVLLE--------IDWQGARQIRELFPPALSIFILPP  127 (205)
T ss_dssp             EETTEEEEEEHHH----HHHHHHTTCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred             eeecccccchHHH----HHHHHHcCCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence            32    3333332    22333221000011        233334445555667777888777

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.34  E-value=9.5e-13  Score=130.96  Aligned_cols=140  Identities=14%  Similarity=0.240  Sum_probs=94.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG  194 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g  194 (457)
                      ++|++++|+|+||+||||+++.|++.+.+++|                  ++|+++.++..   ..++.|++..++..  
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~---r~~a~eqL~~~~~~--  159 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY---RIAAVEQLKTYAEL--  159 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS---STTHHHHHHHHHTT--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc---cchHHHHHHHHHHh--
Confidence            57999999999999999999999999988777                  23555555542   24566666543332  


Q ss_pred             CCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH---hC
Q psy10858        195 MDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV---GK  271 (457)
Q Consensus       195 ~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~---~~  271 (457)
                                      .+++...    ..+ +..-+.+++  .+.+|+++|+|  |+|+|+..+..++++.+.+.   ..
T Consensus       160 ----------------~gl~~~~----~~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~  214 (296)
T 2px0_A          160 ----------------LQAPLEV----CYT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSI  214 (296)
T ss_dssp             ----------------TTCCCCB----CSS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTE
T ss_pred             ----------------cCCCeEe----cCC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCC
Confidence                            2332110    012 233344555  45999999999  99999988877777765543   22


Q ss_pred             CcEEEE-EcCChhHHhc-cCeEEEEeCCeEEEe
Q psy10858        272 GRTVIM-TTQYIEEAND-ASEVAFLYKGRIIAQ  302 (457)
Q Consensus       272 g~TIIi-sTH~~~ea~~-~dri~im~~GkI~~~  302 (457)
                      ++++++ +||..+++.. ++++..+..+.++..
T Consensus       215 ~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          215 QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             EEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence            344555 5999888765 777666666777653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.34  E-value=3.8e-15  Score=139.30  Aligned_cols=152  Identities=16%  Similarity=0.176  Sum_probs=87.1

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      .++|+++||+||||||||||+++|+|+++|+   .|.|.++|.....                       +..+++....
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~-----------------------~~~~~~~~~~   75 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN-----------------------RLLEPRGLLP   75 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH-----------------------HHHGGGTCGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH-----------------------HHHHHhcccc
Confidence            4789999999999999999999999999864   5666655543321                       1111110000


Q ss_pred             hhcCC----CHHHHHHHHHHHHhH--cCCCCCCCCCCCCChhHHHHHHHH-HHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        191 MIYGM----DESIWLFQMRKYSHV--LKLPNLERPVKYLSGGQKRRLSFT-IAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       191 ~l~g~----~~~~~~~~~~~ll~~--l~L~~~~~~~~~LSGGqkQRlsLA-~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                       ..+.    ......+.+..+...  +.++..++ ...+|+||+||+++| ++++.++.++++|||.           |.
T Consensus        76 -~~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~  142 (208)
T 3c8u_A           76 -RKGAPETFDFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR  142 (208)
T ss_dssp             -GTTSGGGBCHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG
T ss_pred             -cCCCCchhhHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH
Confidence             0011    111111122222111  11121222 335799999999998 8888888888888884           21


Q ss_pred             HHHHHHhCCcEEEEEcCChhHH-hc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        264 LLQVFVGKGRTVIMTTQYIEEA-ND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       264 ~i~~~~~~g~TIIisTH~~~ea-~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      .+   .+.--.+++++++.+.. ++ +.|.  +..|.     +++++...
T Consensus       143 ~l---~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~  182 (208)
T 3c8u_A          143 DL---TAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR  182 (208)
T ss_dssp             GG---GGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred             HH---HHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence            11   12223678888888763 33 5552  34454     55665544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.31  E-value=2.3e-16  Score=149.47  Aligned_cols=179  Identities=15%  Similarity=0.056  Sum_probs=74.3

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCceEEEEcCccCCCCchh-hhcCcEEEEcCCCCCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV-GLKNISQGEIWVLGGHPASIYHK-TAGSKVGYMPQELAMFGELT  181 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~-Gll~p~sG~I~i~G~~~~~~~~~-~~r~~IGyvpQ~~~L~~~lT  181 (457)
                      .+..+++||++++|+++||+||||||||||+++|+ |++++.     .++......... .....++|.+++...|..++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~   88 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC   88 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence            34678999999999999999999999999999999 998652     233322211100 01123457777665555444


Q ss_pred             HHHHHH----HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHH-HHH-HHhhcCCceEEEeCCCCCCCH
Q psy10858        182 IKETLN----FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL-SFT-IAILHKPQLIILDEPCVGVDP  255 (457)
Q Consensus       182 V~EnL~----~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRl-sLA-~ALl~~P~lLILDEPTsGLDp  255 (457)
                      +.+++.    ++...++.+.+.+.+.    ++.-.....+-.+. -....++++ .-+ ..++..|+..+++|++.+.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~  163 (231)
T 3lnc_A           89 SNGEIIEHAEVFGNFYGVPRKNLEDN----VDKGVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA  163 (231)
T ss_dssp             HTTCEEEEEEETTEEEEEECTTHHHH----HHHTCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC------
T ss_pred             hcCceehhhhhccccCCCCHHHHHHH----HHcCCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC
Confidence            444433    2222333332222222    22211000110000 011123333 111 234567788888999999987


Q ss_pred             HHHHHHHHHHHHHH-----hCCcEEEEEcCChhHHh-ccCeEE
Q psy10858        256 LVRKRMWDLLQVFV-----GKGRTVIMTTQYIEEAN-DASEVA  292 (457)
Q Consensus       256 ~~r~~i~~~i~~~~-----~~g~TIIisTH~~~ea~-~~dri~  292 (457)
                      .+...+.+.+....     .....+++++|+++++. .+++++
T Consensus       164 ~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i  206 (231)
T 3lnc_A          164 DDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL  206 (231)
T ss_dssp             --------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence            77776665443321     12456778888888774 355544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.30  E-value=3.1e-14  Score=142.68  Aligned_cols=117  Identities=19%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCccCCCCchhhhcCcEEEEcCCCCCCC----CCCHHH
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV---LGGHPASIYHKTAGSKVGYMPQELAMFG----ELTIKE  184 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i---~G~~~~~~~~~~~r~~IGyvpQ~~~L~~----~lTV~E  184 (457)
                      +++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+   .|+..+... ...+..+||++|.+.+..    .+|+ |
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence            556789999999999999999999999999999999998   787665322 111222799999997755    6899 8


Q ss_pred             HHH-Hhhhh---------cC-CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHH
Q psy10858        185 TLN-FFGMI---------YG-MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRR  230 (457)
Q Consensus       185 nL~-~~~~l---------~g-~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQR  230 (457)
                      ++. ++..+         .+ ....+...++.++++.+++.. ..+...+|+.|++||
T Consensus       246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            883 22221         12 122223456788899999864 334455677777773

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.28  E-value=3e-13  Score=127.27  Aligned_cols=170  Identities=12%  Similarity=0.149  Sum_probs=90.2

Q ss_pred             eeEeee-eEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCH
Q psy10858        105 VVLNNC-SLVVKRREFFVLLGASSAGKTTLL-KAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTI  182 (457)
Q Consensus       105 ~aL~~v-s~~I~~Gei~gLlGpNGaGKTTLL-k~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV  182 (457)
                      ..||.+ .--+++|++++|.||||||||||+ +++.+..+...+.+++.+... ..........+|+.+|+......+++
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~~~~~~l~~   88 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPYEEKGMFAM   88 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence            346666 567899999999999999999995 455555554445555544321 10101111123333332110001111


Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHhHcCC-CCCCCCCCCCChhHHHHHHHHHHhh--cCCceEEEeCCCCCC--CHHH
Q psy10858        183 KETLNFFGMIYGMDESIWLFQMRKYSHVLKL-PNLERPVKYLSGGQKRRLSFTIAIL--HKPQLIILDEPCVGV--DPLV  257 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L-~~~~~~~~~LSGGqkQRlsLA~ALl--~~P~lLILDEPTsGL--Dp~~  257 (457)
                      .+.       +   .           ..++. ...+.....-+....+.+..++.++  .+|+++++|+|++.+  |+..
T Consensus        89 ~~~-------~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~  147 (247)
T 2dr3_A           89 VDA-------F---T-----------AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAM  147 (247)
T ss_dssp             EEC-------S---T-----------TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGG
T ss_pred             Eec-------c---h-----------hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHH
Confidence            000       0   0           00000 0001111111222333333444443  579999999999988  6644


Q ss_pred             HHH-HHHHHHHHHhCCcEEEEEcCChhH--------Hh-ccCeEEEEeC
Q psy10858        258 RKR-MWDLLQVFVGKGRTVIMTTQYIEE--------AN-DASEVAFLYK  296 (457)
Q Consensus       258 r~~-i~~~i~~~~~~g~TIIisTH~~~e--------a~-~~dri~im~~  296 (457)
                      +++ +..+.+.+++.|+|||+++|...+        ++ .||.|+.|+.
T Consensus       148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            444 444466666789999999998876        33 3899999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.27  E-value=4e-12  Score=126.26  Aligned_cols=132  Identities=18%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      +..+++++.|+.  ..  ++++|+  +|++++++|+||+||||++..|+|++.+..|+|.+.+.++....  ..      
T Consensus        77 ~~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~--~~------  142 (295)
T 1ls1_A           77 TVYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA--AR------  142 (295)
T ss_dssp             HHHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH--HH------
T ss_pred             HHHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh--HH------
Confidence            456677888876  32  788998  99999999999999999999999999999999999876653210  00      


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP  249 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP  249 (457)
                                    +.+.                  .+.+..+++..... ...+..+.+|.+++.+...+++++|+|||
T Consensus       143 --------------~ql~------------------~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtp  189 (295)
T 1ls1_A          143 --------------EQLR------------------LLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTA  189 (295)
T ss_dssp             --------------HHHH------------------HHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             --------------HHHH------------------HhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence                          0110                  01122344321000 01233455788999998899999999999


Q ss_pred             -CCCCCHHHHHHHHHHHHHH
Q psy10858        250 -CVGVDPLVRKRMWDLLQVF  268 (457)
Q Consensus       250 -TsGLDp~~r~~i~~~i~~~  268 (457)
                       ++++|......++++.+..
T Consensus       190 p~~~~d~~~~~~l~~~~~~~  209 (295)
T 1ls1_A          190 GRLQIDEPLMGELARLKEVL  209 (295)
T ss_dssp             CCSSCCHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHhhhc
Confidence             9999998888888876654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.23  E-value=3.6e-12  Score=127.57  Aligned_cols=112  Identities=12%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF  188 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~  188 (457)
                      .++++.++|++++|+|+|||||||+++.|+|.+.++.|+|.+.+.+....         +             ..+.+  
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~-------------a~eqL--  151 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A-------------AIEQL--  151 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H-------------HHHHH--
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H-------------HHHHH--
Confidence            45677789999999999999999999999999999889998877654210         0             11222  


Q ss_pred             hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHH---HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHH
Q psy10858        189 FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRL---SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL  265 (457)
Q Consensus       189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRl---sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i  265 (457)
                                      ..+.+.++++.    +..+|+|+.|++   ++++|+..+|+++|+|||..   ......+++.+
T Consensus       152 ----------------~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL  208 (306)
T 1vma_A          152 ----------------KIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEEL  208 (306)
T ss_dssp             ----------------HHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHH
T ss_pred             ----------------HHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHH
Confidence                            22334455532    335789999999   89999999999999999974   33444555544


Q ss_pred             HH
Q psy10858        266 QV  267 (457)
Q Consensus       266 ~~  267 (457)
                      ..
T Consensus       209 ~~  210 (306)
T 1vma_A          209 RK  210 (306)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.21  E-value=5.4e-16  Score=151.14  Aligned_cols=141  Identities=15%  Similarity=0.177  Sum_probs=98.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ..+++++.+.|+.  ..+++++++++++|  ++|+||||||||||+++|+|...  .|.|.+++.++.........+.++
T Consensus        49 ~~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~  122 (278)
T 1iy2_A           49 KEELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR  122 (278)
T ss_dssp             HHHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence            3456677777876  77899999999999  89999999999999999999985  789999886543211112234577


Q ss_pred             EEcCCCC-CCCCCCHHHHHHHhhhhcCC----CHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        169 YMPQELA-MFGELTIKETLNFFGMIYGM----DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g~----~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +++|... ..+.+++.|++.......+.    ...+....+..+            +.+|||||+||+.+++|+.++|++
T Consensus       123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~lsgg~~~~~~i~~a~t~~p~~  190 (278)
T 1iy2_A          123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI  190 (278)
T ss_dssp             HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH------------HHHHTTCCTTCCEEEEEEESCTTS
T ss_pred             HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH------------HHHHhCCCCCCCEEEEEecCCchh
Confidence            8888753 55667777887543322111    112222233332            245899999999999999999987


Q ss_pred             EEEeCC
Q psy10858        244 IILDEP  249 (457)
Q Consensus       244 LILDEP  249 (457)
                        ||++
T Consensus       191 --ld~~  194 (278)
T 1iy2_A          191 --LDPA  194 (278)
T ss_dssp             --SCHH
T ss_pred             --CCHh
Confidence              5544

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.20  E-value=4.1e-16  Score=149.43  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ..+++++++.|++  ..+++++++++++|  ++|+||||+|||||+++|+|...  .|.+.++|.++.........+.++
T Consensus        25 ~~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~   98 (254)
T 1ixz_A           25 KEELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR   98 (254)
T ss_dssp             HHHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence            3445677777776  67899999999999  89999999999999999999885  789999886542211112234577


Q ss_pred             EEcCCCC-CCCCCCHHHHHHHhhhhcCC----CHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        169 YMPQELA-MFGELTIKETLNFFGMIYGM----DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g~----~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +++|... ..+.+++.|++...+...+.    ..++..+.+..++            ..|||||+||+.+++|+.++|++
T Consensus        99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------~~l~g~~~~~~~i~~a~t~~p~~  166 (254)
T 1ixz_A           99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDI  166 (254)
T ss_dssp             HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred             HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------HHHhCCCCCCCEEEEEccCCchh
Confidence            7888753 45667777777543322211    1122222233332            35789999999999999999987


Q ss_pred             EEEeCCCC------------CCCHHHHHHHHHH
Q psy10858        244 IILDEPCV------------GVDPLVRKRMWDL  264 (457)
Q Consensus       244 LILDEPTs------------GLDp~~r~~i~~~  264 (457)
                        ||++..            -.|...|..+|+.
T Consensus       167 --ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~  197 (254)
T 1ixz_A          167 --LDPALLRPGRFDRQIAIDAPDVKGREQILRI  197 (254)
T ss_dssp             --SCGGGGSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred             --CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHH
Confidence              677643            2356666666654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.16  E-value=1.2e-11  Score=131.00  Aligned_cols=52  Identities=15%  Similarity=0.001  Sum_probs=49.3

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA  156 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~  156 (457)
                      ..+|+++||+|++ |+++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            4579999999999 999999999999999999999999999999999998775

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.14  E-value=4e-11  Score=121.90  Aligned_cols=145  Identities=19%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMI  192 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l  192 (457)
                      -+++|+++.|.||||+|||||+..++.......|.+.+                   +.-+..+.+   .      .+..
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly-------------------i~~E~~~~~---~------~a~~  108 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF-------------------IDAEHALDP---E------YAKK  108 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-------------------EESSCCCCH---H------HHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE-------------------EECCCCcCH---H------HHHH
Confidence            57899999999999999999988887654333333332                   222211100   0      0111


Q ss_pred             cCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcC--CceEEEeCCCCCC----------CH---HH
Q psy10858        193 YGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK--PQLIILDEPCVGV----------DP---LV  257 (457)
Q Consensus       193 ~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~--P~lLILDEPTsGL----------Dp---~~  257 (457)
                      .|++.+           .+-+   .   ...+.  .|-+.++++++.+  |+++++|||++.+          |+   ..
T Consensus       109 lG~~~~-----------~l~i---~---~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q  169 (349)
T 2zr9_A          109 LGVDTD-----------SLLV---S---QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQ  169 (349)
T ss_dssp             TTCCGG-----------GCEE---E---CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHH
T ss_pred             cCCCHH-----------HeEE---e---cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHH
Confidence            122110           0000   0   01122  2345677777654  9999999999998          43   12


Q ss_pred             ----HHHHHHHHHHHHhCCcEEEEEcCChhH----------------Hhc-cCeEEEEeCCeEEEecC
Q psy10858        258 ----RKRMWDLLQVFVGKGRTVIMTTQYIEE----------------AND-ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       258 ----r~~i~~~i~~~~~~g~TIIisTH~~~e----------------a~~-~dri~im~~GkI~~~gs  304 (457)
                          .+.+.++...+++.|+|||+++|....                ++. ||.++.++.++++..|+
T Consensus       170 ~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          170 ARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                222333333345679999999996531                333 78888888877665543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.06  E-value=2.1e-12  Score=139.79  Aligned_cols=168  Identities=11%  Similarity=0.035  Sum_probs=109.3

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCccCCCCchhhhcCcEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQ-GEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s-G~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +.-++++.-||.  ..+++++++.+.+|+.++|+||||+|||||+++|+|++++.. |.+.+++.....     ....++
T Consensus        35 ~rp~~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~  107 (604)
T 3k1j_A           35 VPEKLIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIK  107 (604)
T ss_dssp             CCSSHHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEE
T ss_pred             ccccccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEE
Confidence            334555666777  789999999999999999999999999999999999999887 888887765532     235689


Q ss_pred             EEcCCCC----------------------CCCCCCHHHHHHHhhhh-cCCCHHHHHHHHHHHHhHcCC-CCCCCCCCCCC
Q psy10858        169 YMPQELA----------------------MFGELTIKETLNFFGMI-YGMDESIWLFQMRKYSHVLKL-PNLERPVKYLS  224 (457)
Q Consensus       169 yvpQ~~~----------------------L~~~lTV~EnL~~~~~l-~g~~~~~~~~~~~~ll~~l~L-~~~~~~~~~LS  224 (457)
                      |+|+...                      .+..+++.+|+.....- .+.+.  .........+.++. .......+.+|
T Consensus       108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~--v~~~~~~~~~L~G~~~~~~~~~g~~~  185 (604)
T 3k1j_A          108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF--IDATGAHAGALLGDVRHDPFQSGGLG  185 (604)
T ss_dssp             EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCE--EECTTCCHHHHHCEECCCCC----CC
T ss_pred             EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCE--EEcCCCCHHhcCceEEechhhcCCcc
Confidence            9987541                      11222222222110000 00000  00000001122332 11223346799


Q ss_pred             hhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10858        225 GGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV  267 (457)
Q Consensus       225 GGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~  267 (457)
                      +|++|++..++....++.+|+|||... |++..+..+.+.++.
T Consensus       186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          186 TPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            999999999999999999999999988 899998888888764

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.05  E-value=4e-12  Score=135.48  Aligned_cols=164  Identities=10%  Similarity=0.057  Sum_probs=98.9

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G--ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      .+++++.++..+.|.|++||||||+++.|..  +..++.|++.+.+.+......... .      .-+.+..  +|.++.
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~------~lPhl~~--~Vvtd~  229 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-E------GIPHLLT--EVVTDM  229 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-T------TCTTBSS--SCBCSH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-c------cCCcccc--eeecCH
Confidence            4778889999999999999999999998876  566667877776665543211111 0      0111111  111122


Q ss_pred             HHhhhhcCCCHHHHHHHHHHHHhHcCCCCC---C-CCCCCCChhHHHHH----------HHHHHhhcCCc-eEEEeCCCC
Q psy10858        187 NFFGMIYGMDESIWLFQMRKYSHVLKLPNL---E-RPVKYLSGGQKRRL----------SFTIAILHKPQ-LIILDEPCV  251 (457)
Q Consensus       187 ~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~---~-~~~~~LSGGqkQRl----------sLA~ALl~~P~-lLILDEPTs  251 (457)
                      .......+....+..+|. +++...++...   + +....+|+||+|+.          .+|+++...|. ++++||+++
T Consensus       230 ~~a~~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~  308 (512)
T 2ius_A          230 KDAANALRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD  308 (512)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence            111111111134455554 56666776432   1 12245788888753          35666778898 899999999


Q ss_pred             CCCHHHHHHHHHHHH----HHHhCCcEEEEEcCChh
Q psy10858        252 GVDPLVRKRMWDLLQ----VFVGKGRTVIMTTQYIE  283 (457)
Q Consensus       252 GLDp~~r~~i~~~i~----~~~~~g~TIIisTH~~~  283 (457)
                      -+|.. ...+.+.+.    .-++-|.++|++||.+.
T Consensus       309 ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          309 LMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             HHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            88833 233444433    33444889999999987

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.04  E-value=6.3e-12  Score=120.82  Aligned_cols=76  Identities=17%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCC--------c
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASI--------Y  159 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~--------~  159 (457)
                      ..|+++|+...|+.         +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++...        .
T Consensus         8 ~~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~   77 (227)
T 1qhl_A            8 RSLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL   77 (227)
T ss_dssp             EEEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred             eEEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence            35788888665531         466666 89999999999999999999999999999999999876221        1


Q ss_pred             hhhhcCcEEEEcCC
Q psy10858        160 HKTAGSKVGYMPQE  173 (457)
Q Consensus       160 ~~~~r~~IGyvpQ~  173 (457)
                      ....+..++|++|+
T Consensus        78 ~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           78 HGKLKAGVCYSMLD   91 (227)
T ss_dssp             GGGBCSSEEEEEEE
T ss_pred             hhHhhcCcEEEEEe
Confidence            12235679999984

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.03  E-value=3.9e-11  Score=125.50  Aligned_cols=178  Identities=12%  Similarity=0.060  Sum_probs=107.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcE-EEEcCCCCCCCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKV-GYMPQELAMFGELT  181 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~I-GyvpQ~~~L~~~lT  181 (457)
                      ...|+++...+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+...   .....++ +...       ...
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~---~~l~~r~~~~~~-------~~~  259 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA---QQLVMRMLCAEG-------NIN  259 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH---HHHHHHHHHHHH-------TCC
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHHHHc-------CCC
Confidence            4578888888999999999999999999999999987765444 45554433221   1111110 0000       001


Q ss_pred             HHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhh--cCCceEEEeCCCCCCCH---
Q psy10858        182 IKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAIL--HKPQLIILDEPCVGVDP---  255 (457)
Q Consensus       182 V~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl--~~P~lLILDEPTsGLDp---  255 (457)
                      . +.+.    ...+...+ ..++.+.++.+.... .-.....+|.++.+  +.|++++  ++|+++++|+++...++   
T Consensus       260 ~-~~l~----~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~  331 (454)
T 2r6a_A          260 A-QNLR----TGKLTPED-WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS  331 (454)
T ss_dssp             H-HHHH----TSCCCHHH-HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred             H-HHHh----cCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence            1 1110    01133332 233444444443321 11124579999987  5666665  78999999999987743   


Q ss_pred             -----HHHHHHHHHHHHHH-hCCcEEEEEcC---------C--hh--------HHhc-cCeEEEEeCCeE
Q psy10858        256 -----LVRKRMWDLLQVFV-GKGRTVIMTTQ---------Y--IE--------EAND-ASEVAFLYKGRI  299 (457)
Q Consensus       256 -----~~r~~i~~~i~~~~-~~g~TIIisTH---------~--~~--------ea~~-~dri~im~~GkI  299 (457)
                           .....+.+.++.+. +.|++||+++|         +  +.        .+++ ||.|++|+.++.
T Consensus       332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence                 23345555555544 55999999999         2  22        3444 899999987654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.92  E-value=8e-11  Score=107.78  Aligned_cols=35  Identities=11%  Similarity=0.097  Sum_probs=31.9

Q ss_pred             HHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Q psy10858        230 RLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ  266 (457)
Q Consensus       230 RlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~  266 (457)
                      .+.+|++++.+|+++++|  ||++|+...+++++.+.
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence            467899999999999999  99999999999999854

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.82  E-value=1.3e-10  Score=106.62  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=30.2

Q ss_pred             HHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Q psy10858        231 LSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ  266 (457)
Q Consensus       231 lsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~  266 (457)
                      ...|++++.+|+++++|  ||++|+...+.+++.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence            45689999999999999  99999999999998843

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.81  E-value=1.3e-11  Score=126.95  Aligned_cols=135  Identities=16%  Similarity=0.153  Sum_probs=86.6

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC-CCCCCCH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-MFGELTI  182 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-L~~~lTV  182 (457)
                      ..+++++++++++|++++|+||||||||||+++|+|.   .+|++...+  .....   ....+|++||... ++++++.
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~~~---~~~~lg~~~q~~~~l~dd~~~  227 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPLDR---LNFELGVAIDQFLVVFEDVKG  227 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCTTT---HHHHHGGGTTCSCEEETTCCC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccchh---HHHHHHHhcchhHHHHHHHHH
Confidence            3689999999999999999999999999999999995   468776511  11111   1123667777764 3344433


Q ss_pred             HHHHHHhhhhcCCCH-HH--HHHHHHHHHh---------------HcCCC--CCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        183 KETLNFFGMIYGMDE-SI--WLFQMRKYSH---------------VLKLP--NLERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       183 ~EnL~~~~~l~g~~~-~~--~~~~~~~ll~---------------~l~L~--~~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ...+     ..+... ..  ....+...++               ..-+.  ..+.....+++|++||+..+.+++..|+
T Consensus       228 ~~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD  302 (377)
T 1svm_A          228 TGGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY  302 (377)
T ss_dssp             STTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred             HHHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence            2211     001100 00  0111222222               11111  1356677899999999999988999999


Q ss_pred             eEE-EeCCCC
Q psy10858        243 LII-LDEPCV  251 (457)
Q Consensus       243 lLI-LDEPTs  251 (457)
                      +++ ||+|+.
T Consensus       303 LliyLd~~~~  312 (377)
T 1svm_A          303 LKHCLERSEF  312 (377)
T ss_dssp             HHHHHHTCTH
T ss_pred             eEEEEeCCHH
Confidence            998 999997

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.73  E-value=4.1e-10  Score=104.18  Aligned_cols=75  Identities=16%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      +-+..++.++|++++|+|||||||||++++|+|.+    |.++++|.++.... ...+..+|+++|+..+++.+++.+++
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHH
Confidence            33344677899999999999999999999999987    89999987764321 11223467888875544444444443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.72  E-value=1.6e-11  Score=130.58  Aligned_cols=156  Identities=15%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ..+++++...|.+  ..+++++++.+++|  +.|+||||+|||||+++|+|...  .|.+.++|.++.........++++
T Consensus        40 k~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~  113 (499)
T 2dhr_A           40 KEELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR  113 (499)
T ss_dssp             HHHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred             HHHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence            3445566656665  56789999999999  89999999999999999999875  788999887764322122234566


Q ss_pred             EEcCCCC-CCCCCCHHHHHHHhhhhcC----CCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        169 YMPQELA-MFGELTIKETLNFFGMIYG----MDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       169 yvpQ~~~-L~~~lTV~EnL~~~~~l~g----~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      +++|... ..+.+.+.|++.......+    ...++....+..++.            .||||++|+..+++|..++|++
T Consensus       114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------~Ldg~~~~~~viviAatn~p~~  181 (499)
T 2dhr_A          114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI  181 (499)
T ss_dssp             HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------HGGGCCSSCCCEEEECCSCGGG
T ss_pred             HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------HhcccccCccEEEEEecCChhh
Confidence            7777753 3455556666643322111    112233333444433            4788999999999999999988


Q ss_pred             EEEeCCCCC------------CCHHHHHHHHHH
Q psy10858        244 IILDEPCVG------------VDPLVRKRMWDL  264 (457)
Q Consensus       244 LILDEPTsG------------LDp~~r~~i~~~  264 (457)
                        |||+..-            -|...|..|++.
T Consensus       182 --LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~  212 (499)
T 2dhr_A          182 --LDPALLRPGRFDRQIAIDAPDVKGREQILRI  212 (499)
T ss_dssp             --SCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred             --cCcccccccccceEEecCCCCHHHHHHHHHH
Confidence              8998653            466677776654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.71  E-value=3.7e-09  Score=97.57  Aligned_cols=125  Identities=17%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDES  198 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~  198 (457)
                      ++||+|+|||||||+.++|+++     |...+++..+.       + .+. .+       . +                 
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~-------~-~~~-~~-------~-~-----------------   44 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA-------R-EVV-AK-------D-S-----------------   44 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH-------H-HTT-CS-------S-C-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH-------H-HHc-cC-------C-h-----------------
Confidence            6899999999999999999993     55555443221       0 000 00       0 0                 


Q ss_pred             HHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy10858        199 IWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT  278 (457)
Q Consensus       199 ~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIis  278 (457)
                         ..+.++.+.+|....      .+.|+.+|..++..+..+|+.+..+  .+.++|..++.+++.+...  .+.+||+.
T Consensus        45 ---~~~~~i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~  111 (206)
T 1jjv_A           45 ---PLLSKIVEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFV  111 (206)
T ss_dssp             ---HHHHHHHHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEE
T ss_pred             ---HHHHHHHHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEE
Confidence               012233344443211      3678899999999888888754433  4567888888887765432  35689999


Q ss_pred             cCChhHH--h-ccCeEEEEe
Q psy10858        279 TQYIEEA--N-DASEVAFLY  295 (457)
Q Consensus       279 TH~~~ea--~-~~dri~im~  295 (457)
                      +|.+.+.  . .||++++++
T Consensus       112 ~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A          112 VPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             CTTTTTTTCGGGCSEEEEEE
T ss_pred             echhhhcCcHhhCCEEEEEE
Confidence            9998876  3 489888874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.68  E-value=5.8e-09  Score=94.26  Aligned_cols=120  Identities=11%  Similarity=0.030  Sum_probs=69.3

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc--cCCCCch----hhhcCcEEEEcCCCCC-C-C-
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG--HPASIYH----KTAGSKVGYMPQELAM-F-G-  178 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~--~~~~~~~----~~~r~~IGyvpQ~~~L-~-~-  178 (457)
                      +++++++.+| +++|+||||||||||+++|.+++.++.|...-.+.  +......    ......|.+++|++.- + + 
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~   96 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID   96 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence            6899999999 99999999999999999999999887765432221  1111000    0123468999998632 1 1 


Q ss_pred             --CCCHHHHHHHh----hhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHH
Q psy10858        179 --ELTIKETLNFF----GMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLS  232 (457)
Q Consensus       179 --~lTV~EnL~~~----~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRls  232 (457)
                        .+++...+.-.    ..+.+..  .....+.+++..+++...+  +.-++.|+.+++.
T Consensus        97 ~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~~--~~~~~qg~~~~l~  152 (182)
T 3kta_A           97 EDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPDG--YNIVLQGDITKFI  152 (182)
T ss_dssp             SSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTTC--TTEECTTCTTHHH
T ss_pred             CcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCCC--CEEEEcccHHHHH
Confidence              12322211000    0011111  1134566777778874321  2346777776654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.67  E-value=2.2e-09  Score=109.64  Aligned_cols=139  Identities=13%  Similarity=0.116  Sum_probs=81.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC-----------CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN-----------ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN  187 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~-----------p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~  187 (457)
                      +++|+|++|||||||++.|+|...           ++.|.|.++|.++.      .....|++.+.+.-.-+ ..+..+.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve-~f~~tl~  253 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVD-AFFVTLS  253 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHH-HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHH-HHHHHHH
Confidence            389999999999999999999876           57788888775431      11224444442211000 0111111


Q ss_pred             Hhh------hhcCCC--H---HHHHHHHHHHHhHcCCCC-C----CCCCCCCChhHHHHHHHH----HHh-hcCCceEEE
Q psy10858        188 FFG------MIYGMD--E---SIWLFQMRKYSHVLKLPN-L----ERPVKYLSGGQKRRLSFT----IAI-LHKPQLIIL  246 (457)
Q Consensus       188 ~~~------~l~g~~--~---~~~~~~~~~ll~~l~L~~-~----~~~~~~LSGGqkQRlsLA----~AL-l~~P~lLIL  246 (457)
                      ...      .....+  .   ....+.+.++++.+++.. .    ..++..+|+|++||+.++    +++ ..+|++   
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---  330 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV---  330 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence            110      011111  1   112223455666665532 1    344667898999988877    555 444554   


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHH
Q psy10858        247 DEPCVGVDPLVRKRMWDLLQVF  268 (457)
Q Consensus       247 DEPTsGLDp~~r~~i~~~i~~~  268 (457)
                       +|+|++|....+.+++.+...
T Consensus       331 -~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          331 -IPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             -EECBTTTTBSHHHHHHHHHHH
T ss_pred             -EEEECCCCcCHHHHHHHHHHH
Confidence             899999999999999986543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.64  E-value=2.2e-08  Score=102.20  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE-EEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHH
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI-WVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN  187 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I-~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~  187 (457)
                      -+++|+++.|.||+|||||||+..+++...+..|.+ ++++.....   ....+++|+.+|+..+....++.+.+.
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~~~~~e~~l~  129 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQPDHGEQALE  129 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhhccCHHHHHH
Confidence            488999999999999999999999999887777765 565543322   123356777777765555556665543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.63  E-value=2.4e-09  Score=103.27  Aligned_cols=67  Identities=16%  Similarity=0.114  Sum_probs=51.1

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---cCCCCCceEEE--------EcCccCCC-CchhhhcCcEEEEcC
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV---GLKNISQGEIW--------VLGGHPAS-IYHKTAGSKVGYMPQ  172 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~---Gll~p~sG~I~--------i~G~~~~~-~~~~~~r~~IGyvpQ  172 (457)
                      .++++.+   ++|++++|+|||||||||++++|+   |+..+++|.++        .+|.++.. ......++.+|+++|
T Consensus        18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   94 (252)
T 4e22_A           18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV   94 (252)
T ss_dssp             -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred             hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence            3455544   789999999999999999999999   99999999998        88877632 223345677999997


Q ss_pred             CC
Q psy10858        173 EL  174 (457)
Q Consensus       173 ~~  174 (457)
                      ..
T Consensus        95 ~~   96 (252)
T 4e22_A           95 SQ   96 (252)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.62  E-value=1.1e-08  Score=93.68  Aligned_cols=60  Identities=22%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCccCCCCchhhhcCcEEEEcCCCC
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLGGHPASIYHKTAGSKVGYMPQELA  175 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~  175 (457)
                      ++|++|++++|+|||||||||++++|++++.|+.| .+.......   .. ....+++|++|++.
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~   61 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQM---RE-GEVDGVDYFFKTRD   61 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCC---CT-TCCBTTTBEECCHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCC---CC-CccCCCceEEcCHH
Confidence            47899999999999999999999999999977666 332111111   10 11234778888654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.62  E-value=3.5e-08  Score=109.96  Aligned_cols=73  Identities=19%  Similarity=0.129  Sum_probs=58.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-cCChhHHh-ccC
Q psy10858        217 ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMT-TQYIEEAN-DAS  289 (457)
Q Consensus       217 ~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIis-TH~~~ea~-~~d  289 (457)
                      +..+.-+|.|+.+|..++.+++.++++||+|||.. +||......+++.+...+.+..+|++| ||+.+.+. .++
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~  260 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN  260 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence            44566789999999999999999999999999996 999887777766654444456778885 99988764 344

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.62  E-value=2e-09  Score=104.66  Aligned_cols=52  Identities=21%  Similarity=0.120  Sum_probs=36.5

Q ss_pred             CceEEEee-EEEe-CCCCceeEeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858         88 EADEGKNT-EKEE-LKPSNVVLNNCSLVVKR---REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus        88 ~~Iei~nl-sk~y-g~~~~~aL~~vs~~I~~---Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++++|+ +++| +.  ..+|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~--~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEE--QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCc--chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            58999999 9999 55  7899999999999   9999999999999999999999865

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.61  E-value=5.5e-08  Score=102.80  Aligned_cols=116  Identities=22%  Similarity=0.254  Sum_probs=77.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ...++++++.+++|  +.|.||+|+|||||+++|++....                      .+-++.-. .+. .    
T Consensus        38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is~~-~~~-~----   87 (476)
T 2ce7_A           38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHISGS-DFV-E----   87 (476)
T ss_dssp             THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEEGG-GTT-T----
T ss_pred             hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCCHH-HHH-H----
Confidence            44577788888888  789999999999999999984310                      01111000 000 0    


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCC----------CCCC
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEP----------CVGV  253 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEP----------TsGL  253 (457)
                                                        ..++  .|++++|..+++|....|.+|++||+          +.|.
T Consensus        88 ----------------------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~  131 (476)
T 2ce7_A           88 ----------------------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG  131 (476)
T ss_dssp             ----------------------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred             ----------------------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence                                              0000  26778888999999999999999999          4477


Q ss_pred             CHHHHHHHHHHHHHHH----hCCcEEEEEcCChhHH
Q psy10858        254 DPLVRKRMWDLLQVFV----GKGRTVIMTTQYIEEA  285 (457)
Q Consensus       254 Dp~~r~~i~~~i~~~~----~~g~TIIisTH~~~ea  285 (457)
                      |+...+.+.+++..+.    ..++.||.+||..+.+
T Consensus       132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            7777776666665542    3578999999998654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.59  E-value=7e-08  Score=97.56  Aligned_cols=124  Identities=18%  Similarity=0.240  Sum_probs=82.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGM  195 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~  195 (457)
                      ..-.++++|++|+|||||++.|+|... .     +.+.+...     ....++.+.+...                    
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t-----~~~~~~~~~~~~~--------------------  214 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTT-----RGINVGQFEDGYF--------------------  214 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCS-----SCEEEEEEEETTE--------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCee-----eceeEEEEEecCc--------------------
Confidence            344789999999999999999999752 1     21211111     1123444443211                    


Q ss_pred             CHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCc
Q psy10858        196 DESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD-EPCVGVDPLVRKRMWDLLQVFVGKGR  273 (457)
Q Consensus       196 ~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD-EPTsGLDp~~r~~i~~~i~~~~~~g~  273 (457)
                                 .+..++.+. .+..+..+|+|++|++. +.+...++-++++| +|++|+|......+++.+..... ++
T Consensus       215 -----------~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~  281 (357)
T 2e87_A          215 -----------RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DL  281 (357)
T ss_dssp             -----------EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TS
T ss_pred             -----------eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CC
Confidence                       012223322 34567789999998876 66666788899999 99999999988887777554333 77


Q ss_pred             EEEEEc--CChh
Q psy10858        274 TVIMTT--QYIE  283 (457)
Q Consensus       274 TIIisT--H~~~  283 (457)
                      .+|++.  ||+.
T Consensus       282 piilV~NK~Dl~  293 (357)
T 2e87_A          282 PFLVVINKIDVA  293 (357)
T ss_dssp             CEEEEECCTTTC
T ss_pred             CEEEEEECcccC
Confidence            788777  8874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.59  E-value=8.2e-09  Score=103.69  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=60.7

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhh-----cCcEEEE-cCCCCC
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTA-----GSKVGYM-PQELAM  176 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~-----r~~IGyv-pQ~~~L  176 (457)
                      +++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.++.....    ...     +..++++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            378999999999999999999999999999999999999999998877643210    111     5679999 676554


Q ss_pred             CCCCCHHHHH
Q psy10858        177 FGELTIKETL  186 (457)
Q Consensus       177 ~~~lTV~EnL  186 (457)
                      .+..++++++
T Consensus       175 ~p~~~~~~~l  184 (320)
T 1zu4_A          175 DPASVVFDAI  184 (320)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4433344443

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.58  E-value=1.5e-09  Score=100.44  Aligned_cols=60  Identities=20%  Similarity=0.225  Sum_probs=47.7

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE--EEcCccC
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEI--WVLGGHP  155 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I--~i~G~~~  155 (457)
                      +|++..++.  ..+.+.+++..++|++++|+|||||||||++++|++.+. ..|.+  +++|.++
T Consensus         3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A            3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred             CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence            467777777  778889999999999999999999999999999999997 67988  8887654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.53  E-value=1.5e-08  Score=111.17  Aligned_cols=134  Identities=13%  Similarity=0.119  Sum_probs=84.6

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHH
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNI--SQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNF  188 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p--~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~  188 (457)
                      |+++++|..++|+|+||+|||||++.|+|...+  ..|+| .+|..+........++.+++.+|...++.. ++..|+  
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl--   78 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL--   78 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence            467889999999999999999999999977654  67888 566655544444445677777776554332 111111  


Q ss_pred             hhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10858        189 FGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVF  268 (457)
Q Consensus       189 ~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~  268 (457)
                                            ++.+...    .++     .......-..+..++++| |+.|+++..++ +|+.+   
T Consensus        79 ----------------------iDTpG~~----~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~---  122 (665)
T 2dy1_A           79 ----------------------LDAPGYG----DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVA---  122 (665)
T ss_dssp             ----------------------EECCCSG----GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHH---
T ss_pred             ----------------------EeCCCcc----chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHH---
Confidence                                  1111000    011     112222234678899999 99999988773 44443   


Q ss_pred             HhCCcEEEEEcCChhH
Q psy10858        269 VGKGRTVIMTTQYIEE  284 (457)
Q Consensus       269 ~~~g~TIIisTH~~~e  284 (457)
                      .+.+..+|++.|.++.
T Consensus       123 ~~~~ip~ilv~NKiD~  138 (665)
T 2dy1_A          123 ERLGLPRMVVVTKLDK  138 (665)
T ss_dssp             HHTTCCEEEEEECGGG
T ss_pred             HHccCCEEEEecCCch
Confidence            3457889999998875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.52  E-value=1.2e-08  Score=103.46  Aligned_cols=42  Identities=21%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA  156 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~  156 (457)
                      +++.+++|+|++|||||||++.|+|.+.+++|+|.+.+.++.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            467899999999999999999999999888899888776654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.51  E-value=1.1e-07  Score=96.04  Aligned_cols=173  Identities=15%  Similarity=0.109  Sum_probs=89.1

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC-CCCCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG--LKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA-MFGEL  180 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G--ll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~-L~~~l  180 (457)
                      ..+|++++++++   .++|+|++|||||||++.|+|  +++..+|.+......+............+..++.+. .+.++
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF  100 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence            458999999999   899999999999999999999  567777765432221110000001123444443332 11111


Q ss_pred             -CHHHHH-----HHhhhhcCCCHHHHHHHH----HHHHhHcCCCCCCC--CCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        181 -TIKETL-----NFFGMIYGMDESIWLFQM----RKYSHVLKLPNLER--PVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       181 -TV~EnL-----~~~~~l~g~~~~~~~~~~----~~ll~~l~L~~~~~--~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                       .+.+.+     ...+...+.+.+.+.-.+    ..-+..++++...+  ..++.++.++++..++++.+.+|+++||.-
T Consensus       101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv  180 (360)
T 3t34_A          101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI  180 (360)
T ss_dssp             HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence             122111     111111111100000000    00022334443222  234577899999999999999999888884


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcC
Q psy10858        249 PCVGVDPLVRKRMWDLLQVFVGKG-RTVIMTTQ  280 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~~~~g-~TIIisTH  280 (457)
                      ..+..|... ...+++++.+...| .+|++.|.
T Consensus       181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            344455443 33455555554444 57777776

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.38  E-value=2.6e-07  Score=93.63  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=84.1

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ...|+.+.--+.+|+++.|.|++|+|||||+..++.......                   ..+.|+.=      +++..
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-------------------~~Vl~fSl------Ems~~   87 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD-------------------RGVAVFSL------EMSAE   87 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------------------CEEEEEES------SSCHH
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------------CeEEEEeC------CCCHH
Confidence            445777776799999999999999999999988875432211                   23455432      34544


Q ss_pred             HHHH-HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858        184 ETLN-FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW  262 (457)
Q Consensus       184 EnL~-~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~  262 (457)
                      +... +.+...+++..                .+  .-+.||.++++|+..|...+.+++++|.|+|...+|     .|.
T Consensus        88 ql~~Rlls~~~~v~~~----------------~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~  144 (338)
T 4a1f_A           88 QLALRALSDLTSINMH----------------DL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIR  144 (338)
T ss_dssp             HHHHHHHHHHHCCCHH----------------HH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHH
T ss_pred             HHHHHHHHHhhCCCHH----------------HH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHH
Confidence            4322 11111222211                11  114799999999999999999999999999975533     344


Q ss_pred             HHHHHH-HhC-CcEEEEEcC
Q psy10858        263 DLLQVF-VGK-GRTVIMTTQ  280 (457)
Q Consensus       263 ~~i~~~-~~~-g~TIIisTH  280 (457)
                      ..++.+ ++. |..+|++-|
T Consensus       145 ~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          145 LQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEec
Confidence            444333 344 788888854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.37  E-value=1e-06  Score=87.87  Aligned_cols=46  Identities=11%  Similarity=-0.018  Sum_probs=36.6

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEcCChhHH
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG---KGRTVIMTTQYIEEA  285 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~---~g~TIIisTH~~~ea  285 (457)
                      .+|.+|++||+... |+.....+.++++....   .+.++|++||+.+..
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence            56889999999876 98888888888655444   588999999998543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.27  E-value=2.4e-07  Score=84.24  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEE
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNI-SQGEIWV  150 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p-~sG~I~i  150 (457)
                      .+|++++|+||||||||||+++|+++.++ ..|.|..
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            36999999999999999999999999874 4565544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.22  E-value=3.4e-07  Score=86.58  Aligned_cols=41  Identities=20%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP  155 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~  155 (457)
                      +.+.++|++++|.|+|||||||++++|+|+    .|+|.+.+.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            345589999999999999999999999998    78899888654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=5.3e-07  Score=83.09  Aligned_cols=38  Identities=29%  Similarity=0.170  Sum_probs=24.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999866

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.19  E-value=2.8e-07  Score=85.27  Aligned_cols=43  Identities=21%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA  156 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~  156 (457)
                      .++|++++|+|+|||||||++++|++++++..|.|.+.+.+..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            5789999999999999999999999999888999988766543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.19  E-value=3.5e-06  Score=88.06  Aligned_cols=39  Identities=15%  Similarity=0.166  Sum_probs=34.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      ++.+++++|+||+||||++..|++.+.+..++|.+-+.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            689999999999999999999999998887888775544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.16  E-value=4.4e-08  Score=98.63  Aligned_cols=56  Identities=13%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             EeeEEEeCCCCceeEeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCC--CCceEEEE
Q psy10858         93 KNTEKEELKPSNVVLNNCSLVVKRRE------FFVLLGASSAGKTTLLKAIVGLKN--ISQGEIWV  150 (457)
Q Consensus        93 ~nlsk~yg~~~~~aL~~vs~~I~~Ge------i~gLlGpNGaGKTTLLk~L~Gll~--p~sG~I~i  150 (457)
                      +.+++.|+.  +.+|++++..+.+++      ++||+||||||||||+++|.|++.  |++|.+.+
T Consensus        64 rll~~~~~~--~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           64 RLLSFYVTA--RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             HHHHHhhcc--hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            455666777  788999999998887      999999999999999999999987  45555443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.14  E-value=2.4e-08  Score=100.62  Aligned_cols=65  Identities=20%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP  155 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~  155 (457)
                      +++.+++.++|+.  ..+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|+|.+.+.++
T Consensus        30 ~ie~~~~~~~~~~--~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           30 LVESRHPRHQALS--TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHCCCHHHHHHH--HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HhhcCCchhhhHH--HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            5777888888877  7889999999999999999999999999999999999988888888766655

>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}

Probab=98.11  E-value=1.1e-06  Score=78.65  Aligned_cols=62  Identities=19%  Similarity=0.138  Sum_probs=45.5

Q ss_pred             hcCCCCCCCeEEEEeccCCcccccCCCCCCCCCCCCCcccCCcCchhhhHHHHhhccCccccc--CCCCHHHHHHHhhcC
Q psy10858        368 TMGSPPAGLKMGVVNYELRGEFERSGNNSPYCPVNHDCLIKSPKARKSCTLLSCLDKDTIKLK--YFPDEESAEEALKNE  445 (457)
Q Consensus       368 ~i~~d~~~l~~av~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g  445 (457)
                      .+..|++++++||||+|.+.                          +||++++.|+  |..+.  ++.|.+||.++|++|
T Consensus         3 ~~~~~~~~~~vaVvd~D~s~--------------------------~s~~l~~~l~--~~~~~~~~~~s~~ea~~~l~~g   54 (156)
T 3cni_A            3 TVEKSTVGQKVAIVREDTGT--------------------------IAELAEKALG--NMVDIVYAGSDLKEAEEAVKKE   54 (156)
T ss_dssp             --------CEEEEEECCCSH--------------------------HHHHHHHHHH--TSSEEEEEESCHHHHHHHHHHH
T ss_pred             hhcCCCCCCcEEEEECCCCH--------------------------HHHHHHHHhc--CcEEEEecCCCHHHHHHHHHcC
Confidence            35689999999999999754                          7899999997  42222  247999999999999


Q ss_pred             ceEEEEEcCCCC
Q psy10858        446 SLSLLLEGSPDL  457 (457)
Q Consensus       446 ~~~~~~~~~~~~  457 (457)
                      +++++|.||+|+
T Consensus        55 ~~~~~l~IP~~F   66 (156)
T 3cni_A           55 KAPAIIVIPKGF   66 (156)
T ss_dssp             TCSEEEEECTTH
T ss_pred             CeeEEEEECcch
Confidence            999999999984

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.11  E-value=2e-09  Score=107.48  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             eeEEEeCCCCceeEeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858         94 NTEKEELKPSNVVLNNCSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus        94 nlsk~yg~~~~~aL~~vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      +++..+|.  ..+++.++..|+.|++  +.|.||+|+||||+++++++.+.+..+.+.+
T Consensus        23 ~~~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~   79 (340)
T 1sxj_C           23 TLDEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV   79 (340)
T ss_dssp             SGGGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred             cHHHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence            34445566  7789999999999999  9999999999999999999988766654333

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.10  E-value=1.5e-06  Score=80.83  Aligned_cols=29  Identities=31%  Similarity=0.371  Sum_probs=27.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      ++|++++|+||||||||||+++|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999999987

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.09  E-value=4.7e-07  Score=94.38  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=50.7

Q ss_pred             EEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCC
Q psy10858         92 GKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPAS  157 (457)
Q Consensus        92 i~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~  157 (457)
                      .+++++.|+.  ..  ++++|+  +|++++++|+|||||||++..|++.+.+..|+|.+.+.++..
T Consensus        79 ~~~L~~~~~~--~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           79 YEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             HHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             HHHHHHHhCC--Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            3457777876  33  678888  999999999999999999999999999999999998876643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.08  E-value=1.2e-06  Score=86.81  Aligned_cols=30  Identities=17%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNIS  144 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~  144 (457)
                      ..+..+.|.||+|+|||||++.+++...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            457789999999999999999999877543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.08  E-value=9.4e-07  Score=79.12  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPA  156 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~  156 (457)
                      .+|++++|+|+|||||||++++|++.+    |.+++++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            469999999999999999999999975    78888876553

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.07  E-value=7.9e-08  Score=102.88  Aligned_cols=81  Identities=20%  Similarity=0.201  Sum_probs=52.4

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      +-++++.+.|+.  ..+++++++++ +|++++|+||||+|||||+++|++.+.+..|.|.+.|...........++.+|+
T Consensus        84 ~G~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~  160 (543)
T 3m6a_A           84 HGLEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA  160 (543)
T ss_dssp             SSCHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred             ccHHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence            345566667766  67888999988 899999999999999999999999999999999887643221111122345676


Q ss_pred             EcCC
Q psy10858        170 MPQE  173 (457)
Q Consensus       170 vpQ~  173 (457)
                      ++|.
T Consensus       161 ~~~~  164 (543)
T 3m6a_A          161 MPGR  164 (543)
T ss_dssp             ---C
T ss_pred             CchH
Confidence            6654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.03  E-value=9.6e-07  Score=94.91  Aligned_cols=43  Identities=23%  Similarity=0.170  Sum_probs=37.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEE-EcCccC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIW-VLGGHP  155 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~-i~G~~~  155 (457)
                      .+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5789999999999999999999999999999987 775 777543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.03  E-value=1.8e-06  Score=81.18  Aligned_cols=32  Identities=28%  Similarity=0.518  Sum_probs=27.1

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      |+...+|++++|+||||||||||++.|.+..+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45556999999999999999999999999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.00  E-value=2.3e-07  Score=91.81  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC---CCCCCCHHHHHHHhhh
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA---MFGELTIKETLNFFGM  191 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~---L~~~lTV~EnL~~~~~  191 (457)
                      .++.+++|+|++|||||||++.|+|...      .+-...+..    ...+..|+++++..   +++  |.         
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~t----Tr~~~~gi~~~~~~~i~~iD--Tp---------   64 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQT----TRHRIVGIHTEGAYQAIYVD--TP---------   64 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSC----CSSCEEEEEEETTEEEEEES--SS---------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCc----ceeeEEEEEEECCeeEEEEE--Cc---------
Confidence            3445899999999999999999999732      121111111    12345677777542   111  11         


Q ss_pred             hcCCC-HH--HHHHH----HHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHhh--cCCceEEEeCCCCCCCHHH-HH
Q psy10858        192 IYGMD-ES--IWLFQ----MRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAIL--HKPQLIILDEPCVGVDPLV-RK  259 (457)
Q Consensus       192 l~g~~-~~--~~~~~----~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~ALl--~~P~lLILDEPTsGLDp~~-r~  259 (457)
                        |.. ..  ...+.    +...++..++..  .|.  ..+|+|++   .++.++.  ..|.++++    +.+|... +.
T Consensus        65 --G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~  133 (301)
T 1ega_A           65 --GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA  133 (301)
T ss_dssp             --SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred             --CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence              111 00  00000    001111111100  122  22898886   4566666  78999999    8999876 66


Q ss_pred             HHHHHHHHHHhC-Cc--EEEEEcCChhHH
Q psy10858        260 RMWDLLQVFVGK-GR--TVIMTTQYIEEA  285 (457)
Q Consensus       260 ~i~~~i~~~~~~-g~--TIIisTH~~~ea  285 (457)
                      .+.+.++.+.+. |.  .+.+++|+-+.+
T Consensus       134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A          134 DLLPHLQFLASQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence            777777666543 43  566677765433

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.99  E-value=2.1e-07  Score=86.61  Aligned_cols=59  Identities=24%  Similarity=0.122  Sum_probs=43.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEE--------cCccCCC-CchhhhcCcEEEEcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK---NISQGEIWV--------LGGHPAS-IYHKTAGSKVGYMPQEL  174 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll---~p~sG~I~i--------~G~~~~~-~~~~~~r~~IGyvpQ~~  174 (457)
                      .+.+++|+|++||||||+.++|++.+   .++.|+++.        .|.++.. ......++.+|+++|++
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            35789999999999999999999866   678899876        5655432 11223456788888864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.98  E-value=7.6e-06  Score=85.19  Aligned_cols=68  Identities=10%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             cCCceEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEcCCh-hHHhc-cCeEEE-EeCCeEEEecChh
Q psy10858        239 HKPQLIILDEPCVGVDP-LVRKRMWDLLQVFVGKGRTVIMTTQYI-EEAND-ASEVAF-LYKGRIIAQDSPD  306 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp-~~r~~i~~~i~~~~~~g~TIIisTH~~-~ea~~-~dri~i-m~~GkI~~~gs~~  306 (457)
                      .+|++|++||+..-.+. ..+..++..+....+.|+.||++||+. .++.. .+++.- +..|.++....|+
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~  264 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence            48999999999876654 678888888877777899999999983 33221 222221 3456666555553

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.98  E-value=2.8e-05  Score=78.27  Aligned_cols=138  Identities=15%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGL--KNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFG  190 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gl--l~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~  190 (457)
                      -+++|+++.|.||+|+|||||+..++..  .++..|     |          ....+.|+.-+..+    .... +.-.+
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g----------~~~~vlyi~~E~~~----~~~~-l~~~~  177 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y----------PGGKIIFIDTENTF----RPDR-LRDIA  177 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B----------CCCEEEEEESSSCC----CHHH-HHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C----------CCCeEEEEECCCCC----CHHH-HHHHH
Confidence            5889999999999999999999988874  322211     0          01234455433321    1211 11112


Q ss_pred             hhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhH-HHHHHHHHHhh----cCCceEEEeCCCCCCCHH--------H
Q psy10858        191 MIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQ-KRRLSFTIAIL----HKPQLIILDEPCVGVDPL--------V  257 (457)
Q Consensus       191 ~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGq-kQRlsLA~ALl----~~P~lLILDEPTsGLDp~--------~  257 (457)
                      ...+++.+.       +++.+.+      ....++.+ .+.+..++.++    .+++++++|+.++-....        .
T Consensus       178 ~~~g~~~~~-------~l~~l~~------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~  244 (343)
T 1v5w_A          178 DRFNVDHDA-------VLDNVLY------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAE  244 (343)
T ss_dssp             HHTTCCHHH-------HHHTEEE------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHH
T ss_pred             HHcCCCHHH-------HHhceeE------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHH
Confidence            223443321       2222211      11123332 24455555665    679999999999866442        1


Q ss_pred             ----HHHHHHHH-HHHHhCCcEEEEEcCChh
Q psy10858        258 ----RKRMWDLL-QVFVGKGRTVIMTTQYIE  283 (457)
Q Consensus       258 ----r~~i~~~i-~~~~~~g~TIIisTH~~~  283 (457)
                          ..+++..+ ...++.|.+||+++|-..
T Consensus       245 r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          245 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence                12333333 333456999999999754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.95  E-value=4.2e-06  Score=77.14  Aligned_cols=33  Identities=21%  Similarity=0.144  Sum_probs=29.0

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +-=++++|++++|+|++||||||+.++|++.++
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            334678899999999999999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.89  E-value=2.9e-05  Score=75.22  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=39.6

Q ss_pred             ChhHHHHHHHHHHhhcCCceEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCcEEEEEcCChhH
Q psy10858        224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDP----------LVRKRMWDLLQVFVG----KGRTVIMTTQYIEE  284 (457)
Q Consensus       224 SGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp----------~~r~~i~~~i~~~~~----~g~TIIisTH~~~e  284 (457)
                      +++++.|..++.|...+|.+|++||+.+.++.          .....++..++....    .+..||.+|++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~  171 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE  171 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence            35677777888888889999999999776553          222233433333211    34678889997654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.87  E-value=2.4e-05  Score=77.71  Aligned_cols=132  Identities=16%  Similarity=0.214  Sum_probs=82.4

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ...|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .      |            ..+.|+.-      +++..
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g------------~~vl~~sl------E~s~~  109 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D------------DVVNLHSL------EMGKK  109 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T------------CEEEEEES------SSCHH
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C------------CeEEEEEC------CCCHH
Confidence            4567887767999999999999999999998887743210 0      0            23555542      24554


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCC-CCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNL-ERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMW  262 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~-~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~  262 (457)
                      +...               ++......+++... +.. ..||.++++|+..|...+.++++++.|+|...+     ..+.
T Consensus       110 ~l~~---------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~  168 (315)
T 3bh0_A          110 ENIK---------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIW  168 (315)
T ss_dssp             HHHH---------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHH
T ss_pred             HHHH---------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHH
Confidence            4332               11111111111111 111 238999999999999999999999999987443     2344


Q ss_pred             HHHHHHH-hCCcE--EEEEcCC
Q psy10858        263 DLLQVFV-GKGRT--VIMTTQY  281 (457)
Q Consensus       263 ~~i~~~~-~~g~T--IIisTH~  281 (457)
                      ..++.+. +.|..  +|++-|-
T Consensus       169 ~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          169 SKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             HHHHHHHHTSSSCCEEEEEECG
T ss_pred             HHHHHHHHhcCCCCeEEEEeCc
Confidence            4444433 34666  8877664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.85  E-value=5.7e-05  Score=71.12  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEcC
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG--KGRTVIMTTQ  280 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~--~g~TIIisTH  280 (457)
                      .+|+++|+..+.+.++......++.+.+....  ...+||+.||
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            47899999999989988777777666554322  1358888888

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.80  E-value=8.3e-06  Score=81.28  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhh
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM  191 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~  191 (457)
                      -+++|+++.|.|++|+|||||+..++... .+.+    +.|          ...++.|+.-+..+    ... .+.-.+.
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~----~gg----------~~~~vlyi~~e~~~----~~~-~l~~~~~  163 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE----KGG----------LSGKAVYIDTEGTF----RWE-RIENMAK  163 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG----GTC----------CSCEEEEEESSSCC----CHH-HHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc----cCC----------CCCeEEEEECCCCC----CHH-HHHHHHH
Confidence            58999999999999999999999887642 3311    000          01234454433321    111 1211122


Q ss_pred             hcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChh-HHHHHHHHHHhh---cCCceEEEeCCCCCCCH--------HHH-
Q psy10858        192 IYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGG-QKRRLSFTIAIL---HKPQLIILDEPCVGVDP--------LVR-  258 (457)
Q Consensus       192 l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGG-qkQRlsLA~ALl---~~P~lLILDEPTsGLDp--------~~r-  258 (457)
                      ..+.+.++       +++.+-+      ....+.. +.+.+..+++++   .+|+++++|+.++-...        ..+ 
T Consensus       164 ~~g~~~~~-------~~~~l~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~  230 (324)
T 2z43_A          164 ALGLDIDN-------VMNNIYY------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQ  230 (324)
T ss_dssp             HTTCCHHH-------HHHTEEE------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHH
T ss_pred             HhCCCHHH-------HhccEEE------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHH
Confidence            23443322       1121111      1112333 335677777777   67999999999876532        122 


Q ss_pred             ---HHHHHHHH-HHHhCCcEEEEEcCChh
Q psy10858        259 ---KRMWDLLQ-VFVGKGRTVIMTTQYIE  283 (457)
Q Consensus       259 ---~~i~~~i~-~~~~~g~TIIisTH~~~  283 (457)
                         .+++..+. ..++.+++||++.|-..
T Consensus       231 ~~~~~~l~~L~~la~~~~~~Vi~~nq~~~  259 (324)
T 2z43_A          231 QKLNKHLHQLTRLAEVYDIAVIITNQVMA  259 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence               23333333 33455999999988654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.79  E-value=7.5e-06  Score=72.77  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      .|++++|+|+|||||||+.++|++.+.+    +++++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            5789999999999999999999998754    45554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.74  E-value=1.5e-05  Score=82.63  Aligned_cols=69  Identities=16%  Similarity=0.310  Sum_probs=40.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC------------CCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHH
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN------------ISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETL  186 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~------------p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL  186 (457)
                      .++|+|+||+|||||++.|+|...            +.+|.+.++|.++.-.+..-.++..++.+|....|..++..+++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i  261 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI  261 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence            689999999999999999999864            67899999987542111111233445555655555555555555


Q ss_pred             H
Q psy10858        187 N  187 (457)
Q Consensus       187 ~  187 (457)
                      .
T Consensus       262 ~  262 (439)
T 1mky_A          262 E  262 (439)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.73  E-value=5.9e-05  Score=74.06  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.+.++..+.|.||+|+|||||.++|++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            346788889999999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.71  E-value=0.00013  Score=64.13  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=21.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            589999999999999999999754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.66  E-value=1e-05  Score=72.84  Aligned_cols=39  Identities=31%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCcc
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGGH  154 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~G~~  154 (457)
                      ++|++++|.|++||||||+.++|++.+++ .|  .+.+++..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~   43 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN   43 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence            47999999999999999999999998866 56  66666543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.62  E-value=0.0001  Score=74.86  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             eeEeeeeE---EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        105 VVLNNCSL---VVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       105 ~aL~~vs~---~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ..||.+ +   -+++|+++.|.|++|+|||||...++..
T Consensus        49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345554 3   3889999999999999999999877754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.62  E-value=2.2e-05  Score=74.58  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             eEeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q psy10858        106 VLNNCSLVVK---RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVL  151 (457)
Q Consensus       106 aL~~vs~~I~---~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~  151 (457)
                      -|.++|+++.   +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            4778888887   9999999999999999999999999887 6666543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.57  E-value=3.9e-05  Score=68.14  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=25.2

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            3455666655 999999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.52  E-value=0.00031  Score=66.68  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++++++.+++|  +.|.||+|+|||||+++|++...
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            44556666666  88999999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.50  E-value=1.6e-05  Score=73.67  Aligned_cols=42  Identities=24%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCc
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG--EIWVLGG  153 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG--~I~i~G~  153 (457)
                      +.+++|.+++|.|++||||||+.+.|++.+.|+.|  .+.++|.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            34678999999999999999999999999988888  7888654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.49  E-value=3.9e-06  Score=83.23  Aligned_cols=60  Identities=12%  Similarity=-0.012  Sum_probs=49.3

Q ss_pred             EEEeeEEEeCCCCceeEee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858         91 EGKNTEKEELKPSNVVLNN-CSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP  155 (457)
Q Consensus        91 ei~nlsk~yg~~~~~aL~~-vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~  155 (457)
                      ..+++.+.|+.  ..  ++ ++++++ |++++++|+||+||||++..|++.+.+..|+|.+.+.++
T Consensus        76 ~~~~l~~~~~~--~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           76 VYDELSNLFGG--DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             HHHHHHHHTTC--SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHHhcc--cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            34566677776  32  56 888876 999999999999999999999999988888898877655

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.47  E-value=6.2e-05  Score=69.34  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999987654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.47  E-value=0.00028  Score=69.41  Aligned_cols=43  Identities=9%  Similarity=0.234  Sum_probs=31.7

Q ss_pred             cCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q psy10858        239 HKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMTTQY  281 (457)
Q Consensus       239 ~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIisTH~  281 (457)
                      .++.+|++||+-. .-+...+..++..+....+.|..+|++|+.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~  140 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  140 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5699999999855 335577888888877766677767666653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.44  E-value=4.4e-05  Score=74.06  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEI  148 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I  148 (457)
                      ..+.|.||+|+||||+.++|++.+....|.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5799999999999999999999887766644

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.42  E-value=8.5e-05  Score=67.77  Aligned_cols=25  Identities=36%  Similarity=0.323  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..+.|.||+|+|||||++.|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5788999999999999999997654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.41  E-value=1.2e-05  Score=81.72  Aligned_cols=57  Identities=16%  Similarity=0.122  Sum_probs=38.8

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      ..+.+.++++.|++  +.++++++|+|      +|+|++|+|||||++.|.|...+..|.+...+
T Consensus        16 ~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~   72 (361)
T 2qag_A           16 GYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA   72 (361)
T ss_dssp             -----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred             ceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence            35888999999987  88899999987      89999999999999999998766666554444

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.37  E-value=0.00013  Score=66.08  Aligned_cols=35  Identities=37%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .+++++++..++. .++++|++|+|||||++.+++-
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            4688999998888 5689999999999999999973

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.32  E-value=3.1e-05  Score=80.01  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             CceEEEeeEEEeCCCCceeEe--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858         88 EADEGKNTEKEELKPSNVVLN--------------NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~--------------~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .-+.++|++..|... +.+|+              |+++.|.+|+..+|+||+|+|||||+++|++.+
T Consensus       132 ~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          132 NKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            357789999999763 66888              899999999999999999999999999999875

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.31  E-value=5.4e-05  Score=71.41  Aligned_cols=120  Identities=13%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY  193 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~  193 (457)
                      +.+|+.+.+.||+||||||++.++........|                ....++++.+.+......++.+++...   .
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----------------~~~~~~~l~~~p~~~la~q~~~~~~~~---~  133 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----------------RAAECNIVVTQPRRISAVSVAERVAFE---R  133 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----------------CGGGCEEEEEESSHHHHHHHHHHHHHT---T
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----------------CCCceEEEEeccchHHHHHHHHHHHHH---h
Confidence            357999999999999999998876432111100                012356666666443333455554321   1


Q ss_pred             CCCHHHHHHHHHHHHhHcCC--CC------CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHH
Q psy10858        194 GMDESIWLFQMRKYSHVLKL--PN------LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDL  264 (457)
Q Consensus       194 g~~~~~~~~~~~~ll~~l~L--~~------~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~  264 (457)
                      +..-          ....+.  ..      .+..+--.+.|.-.+..  .+.+.+-+++|+||.-. ++|.......++.
T Consensus       134 ~~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~  201 (235)
T 3llm_A          134 GEEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRD  201 (235)
T ss_dssp             TCCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred             cccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence            1000          000010  00      00011113456665553  34688999999999966 6777666444444

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.30  E-value=0.00021  Score=66.42  Aligned_cols=30  Identities=27%  Similarity=0.532  Sum_probs=24.4

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      .+.++++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            3455666654 99999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.29  E-value=1.7e-06  Score=85.40  Aligned_cols=44  Identities=14%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      ++.+|++|| ...|++..+..+++.++... ....+|++|++....
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l  176 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVTRI  176 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhhC
Confidence            678999999 78899999988888877643 345567777776643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.29  E-value=0.00019  Score=63.89  Aligned_cols=28  Identities=32%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|..++|+|++|+|||||++.|+|...
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~   29 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREA   29 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3678899999999999999999999753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.27  E-value=0.001  Score=68.98  Aligned_cols=131  Identities=14%  Similarity=0.111  Sum_probs=79.4

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIK  183 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~  183 (457)
                      ...|+.+.--+++|+++.|.|++|+|||||...++.......|                  ..+.|+.=      +++..
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~sl------E~~~~  242 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSL------EMPAA  242 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEES------SSCHH
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEEC------CCCHH
Confidence            3457777656999999999999999999999888764322111                  23455432      24433


Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        184 ETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       184 EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                      +..               .++...  ..+++...-.-+.||..+.+|+.-|...+.+.++.+.|+|...  +.   ++..
T Consensus       243 ~l~---------------~R~~~~--~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~~---~l~~  300 (444)
T 2q6t_A          243 QLT---------------LRMMCS--EARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--LM---EVRA  300 (444)
T ss_dssp             HHH---------------HHHHHH--HTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--HH---HHHH
T ss_pred             HHH---------------HHHHHH--HcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--HH---HHHH
Confidence            222               122111  2233211112246999999999998888888889999887443  32   2333


Q ss_pred             HHHHH-HhCCcEEEEEcC
Q psy10858        264 LLQVF-VGKGRTVIMTTQ  280 (457)
Q Consensus       264 ~i~~~-~~~g~TIIisTH  280 (457)
                      .++.+ ++.|..+|++-+
T Consensus       301 ~~~~l~~~~~~~lIvID~  318 (444)
T 2q6t_A          301 RARRLVSQNQVGLIIIDY  318 (444)
T ss_dssp             HHHHHHHHSCCCEEEEEC
T ss_pred             HHHHHHHHcCCCEEEEcC
Confidence            33332 345677777644

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.27  E-value=0.00068  Score=64.94  Aligned_cols=53  Identities=25%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             HHHHhhcCCceEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hCCcEEEEEcCChhHH
Q psy10858        233 FTIAILHKPQLIILDEPCV----------GVDPLVRKRMWDLLQVFV----GKGRTVIMTTQYIEEA  285 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTs----------GLDp~~r~~i~~~i~~~~----~~g~TIIisTH~~~ea  285 (457)
                      +..|....|.+|++||--.          +-+...+..+.+++....    ..+..||.+|+..+.+
T Consensus       103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l  169 (285)
T 3h4m_A          103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL  169 (285)
T ss_dssp             HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred             HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence            3444456789999999733          236666777777766542    2356788899887654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.25  E-value=7.5e-05  Score=67.47  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      +...+|.+++|.|++||||||+.+.|++.+.+..|.+.+
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~   46 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV   46 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            344689999999999999999999999998877776643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.23  E-value=5e-05  Score=69.30  Aligned_cols=41  Identities=34%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             EeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858         98 EELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus        98 ~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +|++- ..+++++|+..+++. ++++|++|+|||||++.+++-
T Consensus         8 ~~~~~-~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A            8 IYSGF-SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHH-HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence            44442 357889999988886 679999999999999999873

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.19  E-value=0.00014  Score=65.88  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=26.8

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|++..+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999999999999875

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.17  E-value=0.00046  Score=69.84  Aligned_cols=44  Identities=14%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             ceEEEeeEEE-eCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858         89 ADEGKNTEKE-ELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus        89 ~Iei~nlsk~-yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      |..++.|+.. |+.     +++..+++.+| +++|.|+|||||||++..|.
T Consensus         2 ~M~l~~L~l~nFr~-----~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            2 SMILKEIRMNNFKS-----HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             CEEEEEEEEEEETT-----EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEeEEEEEcccc-----ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            3456666643 444     57788888775 99999999999999999876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.14  E-value=0.00018  Score=65.71  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +++|+|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.12  E-value=0.00016  Score=65.63  Aligned_cols=45  Identities=9%  Similarity=0.082  Sum_probs=33.1

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .+|.+|++||.-. +|+.....+.+.++.. ..+..+|++|++...+
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~  169 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL  169 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence            4688999999755 7888777777666432 3467889999887654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.10  E-value=0.00047  Score=68.13  Aligned_cols=28  Identities=18%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..+..+.|.||.|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566789999999999999999987653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.10  E-value=0.00023  Score=73.46  Aligned_cols=41  Identities=12%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCceEEEEcCc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGL-----------KNISQGEIWVLGG  153 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gl-----------l~p~sG~I~i~G~  153 (457)
                      .+..|..+||+|+||+|||||++.|+|.           +.|+.|.+.+.|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            4467788999999999999999999998           6788898887664

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.08  E-value=0.0002  Score=65.83  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=26.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ...+|.+++|+||+||||||+.+.|...++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            457899999999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.06  E-value=0.00033  Score=62.20  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|++|+|||||++.|+|..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~~   31 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGEN   31 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.99  E-value=7.2e-05  Score=71.79  Aligned_cols=48  Identities=19%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             HHHHhhcCCceEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy10858        233 FTIAILHKPQLIILDEPCVG-VDPLVRKRMWDLLQVFVGKGRTVIMTTQ  280 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsG-LDp~~r~~i~~~i~~~~~~g~TIIisTH  280 (457)
                      +..++..+|+++|+||+-.- .+.......|+.+......|..|+.++|
T Consensus        77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            33334468999999998642 4433344456665556678999999999

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.00017  Score=65.89  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      ..+++|.|++||||||+.+.|++.+    |...+++..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~   51 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA   51 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence            5689999999999999999999875    445555433

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.88  E-value=0.00045  Score=61.85  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      -++|+|++|+|||||++.++|...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            3789999999999999999997544

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.84  E-value=0.00049  Score=61.60  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .+|.+++|.|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999984

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.84  E-value=0.0017  Score=66.15  Aligned_cols=27  Identities=41%  Similarity=0.477  Sum_probs=24.0

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -+++|+++.|.|+.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999876654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.82  E-value=0.0046  Score=60.85  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=24.8

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -+++|+++.|.|++|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999999988775

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.79  E-value=0.00045  Score=63.21  Aligned_cols=37  Identities=27%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCc
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNIS---QGEIWVLGG  153 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~---sG~I~i~G~  153 (457)
                      -.+++|+|++|||||||++.|.+.+++.   -|.|..+++
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            3589999999999999999999876543   366666543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.73  E-value=0.00069  Score=63.78  Aligned_cols=28  Identities=25%  Similarity=0.214  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      =.+|.+++|+|++||||||+.++|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3678999999999999999999999743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.71  E-value=0.00015  Score=73.84  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             eeEeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        105 VVLNNCSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            467788888999999  99999999999999999998753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.69  E-value=0.00057  Score=65.29  Aligned_cols=40  Identities=25%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      ..+++.++.|+|++||||||+.+.|+..+.  .|.+.+++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~   67 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS   67 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence            456788999999999999999999998764  3567776643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.63  E-value=0.00063  Score=68.97  Aligned_cols=47  Identities=15%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             cCCceEEEeCCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        239 HKPQLIILDEPCVGV---DPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       239 ~~P~lLILDEPTsGL---Dp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      ..|.++++||-=.=+   +|...+.+.++++..++.|..++++||+++.+
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~  310 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF  310 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence            358999999997777   47788888888888899999999999999765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.63  E-value=0.0095  Score=59.76  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ...-+.|.||.|+|||||.+.|+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45668899999999999999998764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.51  E-value=0.0013  Score=57.62  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|.|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.51  E-value=0.0031  Score=75.56  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE  147 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~  147 (457)
                      -+++|+++.|.||+|+|||||+..++.......|.
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~  762 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT  762 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC
Confidence            38999999999999999999999998765433333

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.51  E-value=0.015  Score=54.40  Aligned_cols=27  Identities=37%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ....-+.|.||.|+||||+.+.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            334457899999999999999998754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.49  E-value=0.0098  Score=51.64  Aligned_cols=28  Identities=18%  Similarity=0.129  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      .+.-+.|.||.|+|||++.+.|......
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            3445789999999999999999876543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.44  E-value=0.0048  Score=62.15  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        112 LVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       112 ~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -.+.+|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4688899999999999999999998875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.38  E-value=0.00059  Score=62.32  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=24.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEI  148 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I  148 (457)
                      +++|.|++||||||+++.|...+......+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v   31 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            689999999999999999998876543344

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.37  E-value=0.0017  Score=59.87  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++-+++|.|++||||||+.++|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999998

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.37  E-value=0.0031  Score=60.01  Aligned_cols=52  Identities=17%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCh----------hHH-hccCeEEEEe
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYI----------EEA-NDASEVAFLY  295 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~----------~ea-~~~dri~im~  295 (457)
                      .+|+++++||--. |++.    +.+.+..+.+.|++||++-|+.          ..+ ..||+|.-|+
T Consensus        88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            3589999999954 6643    3334444455699999999932          222 4588888875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.36  E-value=0.002  Score=57.12  Aligned_cols=27  Identities=26%  Similarity=0.484  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .|.++.|.|++||||||+.+.|+..+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            367899999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.35  E-value=0.0019  Score=57.46  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +|.++.|.|++||||||+.+.|+-.+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998643

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.33  E-value=0.0007  Score=64.93  Aligned_cols=26  Identities=12%  Similarity=0.225  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.-+++|.||+||||||+.+.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999998543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.33  E-value=0.0018  Score=58.03  Aligned_cols=27  Identities=26%  Similarity=0.381  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++.++.|.|++||||||+.+.|+-.+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999997543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.31  E-value=0.0019  Score=56.11  Aligned_cols=19  Identities=21%  Similarity=0.510  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHH
Q psy10858        119 FFVLLGASSAGKTTLLKAI  137 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L  137 (457)
                      +++|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.25  E-value=0.025  Score=59.23  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=27.2

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .|+.+---+.+|+++.|.|++|+|||||+--++-
T Consensus       231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            3555443589999999999999999999776654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.23  E-value=0.028  Score=58.80  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=27.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      ++.++.++|++|+||||++..|+..+....-+|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            57899999999999999999999876543334433

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.22  E-value=0.012  Score=59.18  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHH-HHHHcCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLL-KAIVGLK  141 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLL-k~L~Gll  141 (457)
                      +++| ++-|.||.|+|||||. .+++...
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence            6789 8999999999999994 4444433

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.20  E-value=0.0032  Score=64.24  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHc-----------CCCCCceEEEEcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVG-----------LKNISQGEIWVLG  152 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~G-----------ll~p~sG~I~i~G  152 (457)
                      |-.++|+|.+|+|||||++.|+|           -+.|+.|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999999           3467788887765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.20  E-value=0.0021  Score=61.78  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=32.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEE
Q psy10858        249 PCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVA  292 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~  292 (457)
                      |||+.+......+++.+... .+.+.++.+.+|+.++++. ++++.
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~  189 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS  189 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence            89999999999999885444 4445566778888888765 56543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.16  E-value=0.011  Score=61.66  Aligned_cols=130  Identities=16%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE  184 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E  184 (457)
                      ..|+.+.--+++|+++.|.|+.|+|||||.--++.-.--.                   ...+.|+.=+      ++..+
T Consensus       185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------------------g~~vl~fSlE------ms~~q  239 (444)
T 3bgw_A          185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------------------DDVVNLHSLE------MGKKE  239 (444)
T ss_dssp             HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------------------TCEEEEECSS------SCTTH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------------------CCEEEEEECC------CCHHH
Confidence            3455555468999999999999999999987776521100                   1245555432      33333


Q ss_pred             HHH-HhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHH
Q psy10858        185 TLN-FFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWD  263 (457)
Q Consensus       185 nL~-~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~  263 (457)
                      ... +.+...+++.....       .       .+  ..|+..+.+|+.-|...+.+.+++|.|+|.  +++..   +..
T Consensus       240 l~~R~~~~~~~i~~~~l~-------~-------g~--~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~---i~~  298 (444)
T 3bgw_A          240 NIKRLIVTAGSINAQKIK-------A-------AR--RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY---IWS  298 (444)
T ss_dssp             HHHHHHHHHSCCCHHHHH-------H-------TG--GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH---HHH
T ss_pred             HHHHHHHHHcCCCHHHHh-------c-------cc--CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH---HHH
Confidence            221 11112233321110       0       00  127888899999888888888999999874  55443   333


Q ss_pred             HHHHH-HhCCcE--EEEEcC
Q psy10858        264 LLQVF-VGKGRT--VIMTTQ  280 (457)
Q Consensus       264 ~i~~~-~~~g~T--IIisTH  280 (457)
                      .++.+ ++.|..  +|++-+
T Consensus       299 ~ir~l~~~~~~~~~lIVID~  318 (444)
T 3bgw_A          299 KTRQTKRKNPGKRVIVMIDY  318 (444)
T ss_dssp             HHHHHHHHSCSSCEEEEEEC
T ss_pred             HHHHHHHHhCCCCeEEEEec
Confidence            33332 334666  777654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.16  E-value=0.0024  Score=57.62  Aligned_cols=31  Identities=16%  Similarity=0.088  Sum_probs=25.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      ..+++|.|++||||||+.+.|+..     |-.+++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            457999999999999999999985     6556644

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.15  E-value=0.0026  Score=57.49  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=24.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999999876

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.13  E-value=0.0027  Score=57.10  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999855

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.08  E-value=0.0045  Score=55.48  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=21.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcC-----CCCCce
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL-----KNISQG  146 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl-----l~p~sG  146 (457)
                      ++|+|++|+|||||++.+++-     ..|+.|
T Consensus        23 i~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~   54 (184)
T 3ihw_A           23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGG   54 (184)
T ss_dssp             EEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            789999999999999765543     345655

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.06  E-value=0.0032  Score=57.28  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=23.9

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++|-+++|.|+.||||||+.+.|+-.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.98  E-value=0.0038  Score=56.47  Aligned_cols=28  Identities=11%  Similarity=0.251  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      +|.+++|.|+.||||||+.+.|+-.+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            5778999999999999999999876543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.97  E-value=0.0038  Score=55.73  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.++.|+|+.||||||+.+.|+-.+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999997544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.96  E-value=0.0038  Score=56.74  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .+|.+++|.|+.||||||+.+.|+-.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            57889999999999999999999854

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.96  E-value=0.0033  Score=56.08  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++.++.|.|++||||||+.+.|+-.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            46788999999999999999999843

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.95  E-value=0.0038  Score=54.98  Aligned_cols=22  Identities=18%  Similarity=0.527  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHc
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.94  E-value=0.0034  Score=58.05  Aligned_cols=22  Identities=41%  Similarity=0.581  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+||||||||||++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.92  E-value=0.0034  Score=60.15  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|+||+|||||||.+.|++.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.92  E-value=0.0042  Score=55.66  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++.+++|.|+.||||||+.+.|+-.+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.89  E-value=0.0043  Score=55.21  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++.+++|.|+.||||||+.+.|+-.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.89  E-value=0.0034  Score=55.83  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.82  E-value=0.011  Score=51.15  Aligned_cols=40  Identities=5%  Similarity=-0.023  Sum_probs=28.2

Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ  280 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH  280 (457)
                      +..+|++||. ..+++..+..+.+.++.....+..+|.+|+
T Consensus        75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn  114 (143)
T 3co5_A           75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS  114 (143)
T ss_dssp             TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            3578999996 467888888888887664334455666554

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.80  E-value=0.0039  Score=61.04  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      .+|.++.|.||+||||||+.+.|...++  .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            4578899999999999999999987553  35566654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.79  E-value=0.046  Score=56.17  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=24.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .-.+..++.|+|++||||||+.+.|+..+
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            34567899999999999999999987643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.77  E-value=0.0036  Score=55.55  Aligned_cols=27  Identities=19%  Similarity=0.160  Sum_probs=18.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            367899999999999999999998544

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.72  E-value=0.022  Score=69.30  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=25.0

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|+++.|.||+|+|||||...++...
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~  407 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAA  407 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999988776543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.70  E-value=0.054  Score=52.09  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.-+.|.||.|+||||+.+.++..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45568899999999999999888765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.70  E-value=0.0054  Score=54.50  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++.|.|+.||||||+.+.|+-.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999987543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.69  E-value=0.08  Score=52.28  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +..-+.|.||.|+|||||.+.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            44568899999999999999999865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.005  Score=54.76  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++++|+.|+|||||++.++|...
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            588999999999999999998653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.60  E-value=0.0055  Score=55.38  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|.|++||||||+.++|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.59  E-value=0.0051  Score=55.22  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=24.2

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++.+++|.|+.||||||+.+.|+-.+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998644

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.55  E-value=0.0055  Score=52.78  Aligned_cols=23  Identities=35%  Similarity=0.666  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|+|+.|+|||||++.++|...
T Consensus         5 i~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEECCCCCCHHHHHHHHcCccc
Confidence            78999999999999999988643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.54  E-value=0.0062  Score=55.59  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      .+++|.|++|||||||+..|...++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            37899999999999999999987653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.53  E-value=0.0067  Score=52.60  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.++|-.
T Consensus         7 i~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCccHHHHHHHHhcCC
Confidence            7899999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.51  E-value=0.0067  Score=58.99  Aligned_cols=23  Identities=35%  Similarity=0.603  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|++|+|||||++.|+|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999964

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.51  E-value=0.0056  Score=54.51  Aligned_cols=22  Identities=50%  Similarity=0.653  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++++|++|+|||||++.+++-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999986

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.49  E-value=0.0078  Score=55.59  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|-+++|.|+.||||||+.+.|+-.+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            357789999999999999999998644

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.49  E-value=0.0071  Score=52.03  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+++-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999984

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.48  E-value=0.0062  Score=51.84  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         6 i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            7899999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.47  E-value=0.0075  Score=56.05  Aligned_cols=27  Identities=30%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++.+++|.|+.||||||+.+.|+-.+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.47  E-value=0.0064  Score=52.23  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         8 i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            7899999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.46  E-value=0.014  Score=58.41  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ...+++..+.+ .|.-+.|.|+||+|||||...|.+
T Consensus       132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            56889988888 788999999999999999999987

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.42  E-value=0.0076  Score=52.04  Aligned_cols=23  Identities=39%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++++|+.|+|||||++.++|...
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~~   27 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQG   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHHhccC
Confidence            68999999999999999987643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.39  E-value=0.0071  Score=51.62  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         6 i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999988643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.38  E-value=0.0071  Score=51.68  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         7 i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            7899999999999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.38  E-value=0.0072  Score=51.61  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.38  E-value=0.007  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.++|-.
T Consensus        12 i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           12 LLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.34  E-value=0.0076  Score=51.84  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            7899999999999999998865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.31  E-value=0.0076  Score=53.54  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.|+|-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999863

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.31  E-value=0.0077  Score=53.15  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.+.|-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            47899999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.30  E-value=0.0089  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.30  E-value=0.0079  Score=51.85  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         9 i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            7899999999999999998763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.28  E-value=0.011  Score=51.52  Aligned_cols=26  Identities=42%  Similarity=0.526  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.-.++|+|+.|+|||||++.+++-.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44568999999999999999998854

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.28  E-value=0.0078  Score=51.76  Aligned_cols=22  Identities=41%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            7899999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.28  E-value=0.0079  Score=52.29  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++++|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999876

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.28  E-value=0.008  Score=51.53  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.27  E-value=0.0081  Score=52.28  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           11 VIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            7899999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.27  E-value=0.0081  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.26  E-value=0.0092  Score=54.65  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.25  E-value=0.0055  Score=53.80  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHc
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      =-++++|++|+|||||++.+++
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.25  E-value=0.01  Score=53.82  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ..+-+++|.|+.||||||+.+.|+-.+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999997643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.24  E-value=0.0084  Score=52.79  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.++|-.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6899999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.23  E-value=0.01  Score=52.72  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.+++|.|+.||||||+.+.|+-.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.23  E-value=0.0085  Score=52.13  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus        10 i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998754

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.19  E-value=0.033  Score=66.77  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             eeEeeeeE--EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        105 VVLNNCSL--VVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       105 ~aL~~vs~--~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ..||.+-=  -+++|+++-|.||+|+|||||.-.++..
T Consensus       369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~  406 (1706)
T 3cmw_A          369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA  406 (1706)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            34555521  3899999999999999999998776643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.18  E-value=0.01  Score=53.86  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +..+++|.|+.||||||+.+.|+-.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            44579999999999999999998543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.16  E-value=0.0087  Score=55.31  Aligned_cols=26  Identities=23%  Similarity=0.153  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.++.|.|+.||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998544

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.15  E-value=0.011  Score=56.55  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++.++.|.|++||||||+.+.|+-.
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.14  E-value=0.011  Score=51.93  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      =++++|.|+.||||||+.+.|+-.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.13  E-value=0.0091  Score=52.39  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+++|.|+.||||||+.+.|+-.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.12  E-value=0.0095  Score=52.27  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.|++-.
T Consensus         7 i~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.11  E-value=0.0097  Score=51.05  Aligned_cols=21  Identities=43%  Similarity=0.607  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+++-
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.09  E-value=0.0098  Score=52.43  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.++|-.
T Consensus        10 i~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A           10 TVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            7899999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.09  E-value=0.011  Score=54.20  Aligned_cols=23  Identities=39%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.07  E-value=0.012  Score=51.46  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.06  E-value=0.0099  Score=52.45  Aligned_cols=23  Identities=39%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|+|+.|+|||||++.+.|...
T Consensus        17 i~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhcc
Confidence            68999999999999999998754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.06  E-value=0.011  Score=51.36  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+++-.
T Consensus         9 i~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            9 IVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEECcCCCCHHHHHHHHHhCc
Confidence            7899999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.05  E-value=0.01  Score=52.16  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        14 i~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           14 FLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.03  E-value=0.01  Score=52.84  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           28 VVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998853

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.03  E-value=0.01  Score=51.12  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++++|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.00  E-value=0.028  Score=68.34  Aligned_cols=89  Identities=10%  Similarity=0.035  Sum_probs=49.8

Q ss_pred             hhhhhhcCCCCCCCeEEEEeccCCcccccCCCCC-CCCCCCCCcccCCcCchhhhHHHHhhccC----cccccCC--CCH
Q psy10858        363 AIFNATMGSPPAGLKMGVVNYELRGEFERSGNNS-PYCPVNHDCLIKSPKARKSCTLLSCLDKD----TIKLKYF--PDE  435 (457)
Q Consensus       363 ~~~~~~i~~d~~~l~~av~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~--~~~  435 (457)
                      +=..+|||+=|.+==+-|.-.|.++-.--...-. ..+..-..|-|-.+...+--.|...|-=.    .+-||..  .-.
T Consensus      1763 ~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 1842 (2050)
T 3cmu_A         1763 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 1842 (2050)
T ss_dssp             HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHH
T ss_pred             HHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHHhhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHH
Confidence            5577899999999888888877655110000000 00022333666555556667788876322    4555543  223


Q ss_pred             HHHHHHhhcCceEEEE
Q psy10858        436 ESAEEALKNESLSLLL  451 (457)
Q Consensus       436 ~~~~~~~~~g~~~~~~  451 (457)
                      +=++.-+|+|.+-+++
T Consensus      1843 ~~~~~~~~~~~~~~~~ 1858 (2050)
T 3cmu_A         1843 EICDALARSGAVDVIV 1858 (2050)
T ss_dssp             HHHHHHHHHTCCSEEE
T ss_pred             HHHHHHHhcCCCcEEE
Confidence            3355667888765543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.97  E-value=0.011  Score=50.68  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.95  E-value=0.011  Score=51.24  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus        17 i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           17 LVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.91  E-value=0.012  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           18 YIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.91  E-value=0.012  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        21 i~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            7899999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.91  E-value=0.011  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .+++|.|+.||||||+.+.|+-.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.90  E-value=0.012  Score=51.35  Aligned_cols=22  Identities=36%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+.+-.
T Consensus        13 i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           13 VMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            7899999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.88  E-value=0.012  Score=56.43  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|..|||||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999974

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.85  E-value=0.012  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++++|+.|+|||||++.|++-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            37899999999999999998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.80  E-value=0.013  Score=51.56  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        13 i~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           13 FLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.79  E-value=0.0096  Score=54.27  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.|+|-.
T Consensus        31 ~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.77  E-value=0.014  Score=51.00  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+++-.
T Consensus        15 i~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            7899999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.76  E-value=0.016  Score=54.96  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++-+++|.|+.||||||+.+.|+-.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5668999999999999999999743

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.75  E-value=0.013  Score=52.28  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        17 i~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           17 VIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999998653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.74  E-value=0.013  Score=53.23  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.|++-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999865

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.73  E-value=0.014  Score=51.94  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++|+|+.|+|||||++.+++-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.73  E-value=0.014  Score=52.36  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+++-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            37899999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.72  E-value=0.013  Score=59.80  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +||+|++|+|||||++.|+|.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999985

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.71  E-value=0.011  Score=53.46  Aligned_cols=22  Identities=41%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999999865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.71  E-value=0.016  Score=53.97  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.71  E-value=0.015  Score=55.02  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|||||||++.|+|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999854

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.70  E-value=0.014  Score=51.76  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|+.|+|||||++.+++-.
T Consensus        10 i~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.70  E-value=0.016  Score=57.15  Aligned_cols=23  Identities=39%  Similarity=0.839  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|.+|+|||||++.|+|..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999999863

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.69  E-value=0.15  Score=49.51  Aligned_cols=44  Identities=14%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        240 KPQLIILDEPCVGVD-PLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       240 ~P~lLILDEPTsGLD-p~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      +++++++||.- .|. ...+..+.+.++.. ..+..+|++|++...+
T Consensus       105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~-~~~~~iI~~~n~~~~l  149 (324)
T 3u61_B          105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAY-SSNCSIIITANNIDGI  149 (324)
T ss_dssp             CEEEEEEESCC-CGGGHHHHHHHHHHHHHH-GGGCEEEEEESSGGGS
T ss_pred             CCeEEEEECCc-ccCcHHHHHHHHHHHHhC-CCCcEEEEEeCCcccc
Confidence            78999999984 444 66777777777664 3467888888887654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.68  E-value=0.015  Score=51.31  Aligned_cols=25  Identities=40%  Similarity=0.557  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .=-++++|+.|+|||||++.+++-.
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3357899999999999999999754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.66  E-value=0.015  Score=50.89  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+++-
T Consensus         8 i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.66  E-value=0.016  Score=54.88  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++||.|+.||||||+.+.|+-.+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998744

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.63  E-value=0.015  Score=51.65  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           25 LLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.63  E-value=0.017  Score=53.27  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .-++||.|+.||||||+.++|.-.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.61  E-value=0.016  Score=55.58  Aligned_cols=23  Identities=39%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|..|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            37899999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.59  E-value=0.014  Score=56.05  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|+|.+|+|||||++.|.|.-.
T Consensus        11 I~vvG~~g~GKSTLin~L~~~~~   33 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSLFLTDL   33 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHSSSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            78999999999999999987643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.58  E-value=0.017  Score=52.81  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.|++..
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.58  E-value=0.016  Score=51.89  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        26 i~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           26 VCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.58  E-value=0.02  Score=50.75  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        19 i~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           19 LLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            7899999999999999999754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.55  E-value=0.018  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           11 ILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.54  E-value=0.021  Score=50.14  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+.+-
T Consensus        21 i~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.53  E-value=0.017  Score=55.82  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|..|||||||++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999974

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.52  E-value=0.015  Score=55.32  Aligned_cols=29  Identities=31%  Similarity=0.400  Sum_probs=22.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..+|-++.|.|+.||||||+.+.|.-.+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.51  E-value=0.016  Score=52.18  Aligned_cols=23  Identities=35%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+++-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.51  E-value=0.02  Score=52.89  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +|-++.|.|+.||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999997644

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.51  E-value=0.036  Score=62.05  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNISQ  145 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~s  145 (457)
                      ..+.|.||+|+|||++.+.|+.......
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~  616 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTE  616 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            4788999999999999999998875433

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.50  E-value=0.017  Score=50.67  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            378999999999999999984

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.49  E-value=0.014  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.++|-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.49  E-value=0.019  Score=56.54  Aligned_cols=23  Identities=35%  Similarity=0.767  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|+|..|+|||||++.|+|.-
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999999863

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.48  E-value=0.019  Score=50.94  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++++|+.|+|||||++.+.+-
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999964

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.48  E-value=0.017  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999999754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.48  E-value=0.018  Score=51.93  Aligned_cols=22  Identities=32%  Similarity=0.696  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           28 FLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            7899999999999999998753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.47  E-value=0.019  Score=55.85  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHc
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .-+++|.|+.||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999984

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.47  E-value=0.021  Score=53.53  Aligned_cols=29  Identities=24%  Similarity=0.176  Sum_probs=24.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      .+|-++.|.|+.||||||+.+.|.-.+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999876643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.47  E-value=0.16  Score=51.15  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.-+.|.||.|+|||||.+.|+...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            45678999999999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.46  E-value=0.017  Score=50.34  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++++|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.46  E-value=0.022  Score=55.08  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEI  148 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I  148 (457)
                      -.++++|.+|+|||||++.|.|......|.+
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~  130 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ  130 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence            4789999999999999999999876554443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.46  E-value=0.017  Score=52.08  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|.+|+|||||++.++|.
T Consensus         9 v~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            9 VVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            889999999999999999974

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.45  E-value=0.015  Score=50.73  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+++-
T Consensus        10 i~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           10 LGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.43  E-value=0.018  Score=51.18  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+++-.
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998853

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.42  E-value=0.0093  Score=62.85  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW  149 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~  149 (457)
                      ..+++.+ +.+-+|+..+|+|++|+|||||++.|++......|.+.
T Consensus       139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            3466666 77889999999999999999999999876543334443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.41  E-value=0.018  Score=51.33  Aligned_cols=22  Identities=23%  Similarity=0.611  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.41  E-value=0.017  Score=51.65  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.40  E-value=0.018  Score=51.05  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+.+-
T Consensus        23 i~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           23 IIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.39  E-value=0.018  Score=51.30  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        26 i~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           26 IVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.38  E-value=0.024  Score=49.31  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+..+.|.||.|+||||+++.++..+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.36  E-value=0.018  Score=51.84  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           11 LLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.35  E-value=0.022  Score=51.10  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      -++|+|..|+|||||++.+.|-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            378999999999999999998644

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.33  E-value=0.019  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+++-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.33  E-value=0.018  Score=50.86  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++++|+.|+|||||++.+.+-.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999999853

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.32  E-value=0.019  Score=52.49  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus        29 i~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            789999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.32  E-value=0.022  Score=52.39  Aligned_cols=23  Identities=39%  Similarity=0.405  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999997643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.32  E-value=0.02  Score=51.29  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++|+|+.|+|||||++.+++-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.29  E-value=0.02  Score=51.01  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        25 i~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998743

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.26  E-value=0.023  Score=51.63  Aligned_cols=23  Identities=39%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|+|+.|+|||||++.+++-..
T Consensus        28 i~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           28 LLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            78999999999999999998643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.25  E-value=0.02  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.++|-.
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998853

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.23  E-value=0.012  Score=57.67  Aligned_cols=26  Identities=19%  Similarity=0.325  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++-++||-|++||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998744

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.21  E-value=0.023  Score=50.79  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.21  E-value=0.021  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+++-.
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.19  E-value=0.021  Score=51.36  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+++-.
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.19  E-value=0.098  Score=50.17  Aligned_cols=51  Identities=24%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC----------hhH-HhccCeEEEEe
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY----------IEE-ANDASEVAFLY  295 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~----------~~e-a~~~dri~im~  295 (457)
                      .+.+++++||----.|      ++++++.+.+.|+.||++-++          +.+ +..||.|.-|+
T Consensus        89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999876644      677776666789999999999          222 35589888775

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.18  E-value=0.027  Score=52.88  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +|.++.|-|+.||||||+++.|.-.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987664

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.18  E-value=0.024  Score=54.92  Aligned_cols=24  Identities=38%  Similarity=0.630  Sum_probs=21.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++|+|..|||||||++.|+|..-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCCc
Confidence            589999999999999999999753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.17  E-value=0.026  Score=53.92  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +|.++.|.|++||||||+.+.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999987664

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.15  E-value=0.024  Score=51.81  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+++-
T Consensus        37 i~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            789999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.11  E-value=0.028  Score=52.46  Aligned_cols=27  Identities=30%  Similarity=0.225  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++..+.|.|+.||||||+.+.|+-.+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.10  E-value=0.022  Score=51.55  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++++|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48899999999999999999854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.10  E-value=0.025  Score=54.47  Aligned_cols=22  Identities=18%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHc
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .++.|.|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.05  E-value=0.023  Score=51.96  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.00  E-value=0.025  Score=50.48  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus        24 i~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           24 LAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCcHHHHHHHHHhC
Confidence            789999999999999988764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.98  E-value=0.03  Score=52.44  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +|.+++|-|+.||||||+.+.|+-.++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999997664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.98  E-value=0.032  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.+++-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.98  E-value=0.026  Score=51.73  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=93.95  E-value=0.017  Score=50.72  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=8.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus        11 i~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           11 LLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.93  E-value=0.031  Score=52.66  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=28.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIW  149 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~  149 (457)
                      .+|.++.+.|+.||||||+.+.|.-.+.. .+.+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~   36 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLL   36 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEE
Confidence            47999999999999999999999988765 45443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.93  E-value=0.047  Score=51.40  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=29.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ...++..-+.+ .|..+.|+||+|+|||||...|+...
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            44566666554 68889999999999999999998653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.89  E-value=0.026  Score=50.12  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus        21 i~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           21 CVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.87  E-value=0.026  Score=50.73  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++++|+.|+|||||++.+++-
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.87  E-value=0.028  Score=53.59  Aligned_cols=22  Identities=23%  Similarity=0.625  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|..|+|||||++.|+|-.
T Consensus        39 I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           39 VLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999854

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.85  E-value=0.026  Score=50.83  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        28 i~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            7899999999999999999754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.84  E-value=0.026  Score=54.02  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++|+|..|+|||||++.|+|...
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            589999999999999999999753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.72  E-value=0.033  Score=48.57  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +..+.|.||.|+|||||++.++..+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999987654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.64  E-value=0.032  Score=53.36  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|..|+|||||++.|+|-.
T Consensus        42 I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           42 ILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.57  E-value=0.034  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|..|+|||||++-+++-.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999888653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.56  E-value=0.039  Score=52.31  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .+|-++.|-|+.||||||+.+.|.-.+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999999987664

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.50  E-value=0.037  Score=51.39  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|.+|+|||||++.++|..
T Consensus        40 VvlvG~~~vGKSSLl~r~~~~~   61 (211)
T 2g3y_A           40 VVLIGEQGVGKSTLANIFAGVH   61 (211)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999999753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.47  E-value=0.015  Score=51.83  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=4.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++|+|+.|+|||||++.+++-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.45  E-value=0.016  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.++|-.
T Consensus        14 i~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           14 ICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999988654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.44  E-value=0.035  Score=50.21  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        32 i~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhhCC
Confidence            7899999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.40  E-value=0.026  Score=53.76  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +++-+++|.|+.||||||+.+.|+-.+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5788999999999999999999987763

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.37  E-value=0.025  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -++++|+.|+|||||++.+.+
T Consensus        24 ~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999999965

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.32  E-value=0.037  Score=50.74  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        16 i~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           16 IVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.29  E-value=0.044  Score=51.69  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .+++..++.|+||.||||+|..+.|+-.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778999999999999999999843

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.29  E-value=0.037  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++++|+.|+|||||++.+++-
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999988853

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.26  E-value=0.19  Score=55.36  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.|.||+|+|||++.+.|+...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.25  E-value=0.042  Score=55.51  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .+++|.||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3799999999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.25  E-value=0.038  Score=49.89  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        12 i~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           12 CVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.23  E-value=0.035  Score=57.55  Aligned_cols=56  Identities=11%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHHhhcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        226 GQKRRLSFTIAILHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       226 GqkQRlsLA~ALl~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .+++....+...+.+++++|+..... ++.+.. ..+++.+   ++.++.+|++-+-++..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEECC---
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEECccch
Confidence            46666677777777888877765543 455443 3444443   34677777777766543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.16  E-value=0.011  Score=61.56  Aligned_cols=44  Identities=16%  Similarity=0.221  Sum_probs=32.3

Q ss_pred             EEEeCC--cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccC
Q psy10858        112 LVVKRR--EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHP  155 (457)
Q Consensus       112 ~~I~~G--ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~  155 (457)
                      |.+.++  .+++++|++|+|||||...|++.+.....+|.+-..++
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            334434  58999999999999999999998765444565544443

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.13  E-value=0.062  Score=49.53  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      -+++|+++.|.|+.|+|||||.--++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            47999999999999999999976543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=93.12  E-value=0.041  Score=50.38  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus        30 i~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            789999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.11  E-value=0.14  Score=54.04  Aligned_cols=74  Identities=14%  Similarity=0.227  Sum_probs=53.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHh--hc---------------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy10858        217 ERPVKYLSGGQKRRLSFTIAI--LH---------------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTT  279 (457)
Q Consensus       217 ~~~~~~LSGGqkQRlsLA~AL--l~---------------~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisT  279 (457)
                      ++..+.+||||+|-.-+|++-  ++               .=.+++|||. +-+|....+..+++++.   -|.=+|++|
T Consensus       374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~---lglQliiat  449 (483)
T 3euj_A          374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER---LDMQLLIAA  449 (483)
T ss_dssp             ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred             ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH---cCCEEEEEC
Confidence            455788999999965544433  22               1257999999 99999999998888764   478888888


Q ss_pred             CChhHHhccCeEEEEe
Q psy10858        280 QYIEEANDASEVAFLY  295 (457)
Q Consensus       280 H~~~ea~~~dri~im~  295 (457)
                      =+ ......|.++.+.
T Consensus       450 P~-~i~p~v~~~~~~~  464 (483)
T 3euj_A          450 PE-NISPERGTTYKLV  464 (483)
T ss_dssp             SS-SCCCSSSEEEECC
T ss_pred             cc-hhhhccCceEEEE
Confidence            87 2234467766553

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.91  E-value=0.056  Score=54.19  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.+++|.||+|||||||...|+-.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4588999999999999999998765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=92.78  E-value=0.064  Score=48.82  Aligned_cols=40  Identities=13%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIE  283 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~  283 (457)
                      .+++++++||-=- +++.    +++.+..+.+.|..||++.++.+
T Consensus        75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~  114 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLT  114 (184)
T ss_dssp             TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred             CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccc
Confidence            3578999999643 5443    44455544566999999988655

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.75  E-value=0.067  Score=54.02  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++.++.|+||.|||||||-..|+-.+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            567999999999999999999998763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=92.71  E-value=0.057  Score=54.12  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++.|+||+|||||||-+.|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999998653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=92.60  E-value=0.017  Score=54.71  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=24.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        108 NNCSLVVKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       108 ~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++.+..++|  +.|.||+|+|||||.+.|+..
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            3344455666  779999999999999999974

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=92.46  E-value=0.067  Score=49.83  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.|+||.||||+|..+.|+--+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999998543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=92.42  E-value=0.073  Score=49.43  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      |.+++|=|+-||||||+.+.|.-.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56889999999999999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.37  E-value=0.044  Score=54.92  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .-+++|+|+.|+|||||++.|++.+.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999987654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=92.31  E-value=0.088  Score=51.33  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCce
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQG  146 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG  146 (457)
                      +-.++++|.+|+|||||++.|.|......|
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~  149 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG  149 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence            346899999999999999999997644333

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.30  E-value=0.069  Score=47.50  Aligned_cols=44  Identities=16%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE  284 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e  284 (457)
                      .++.+|++||. ..+++.....+.++++.. ..+..+|++|+..+.
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~  144 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSR  144 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhh
Confidence            46899999995 557777777777776653 345677888877654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=92.24  E-value=0.065  Score=54.93  Aligned_cols=69  Identities=22%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             HHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEE---eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy10858        204 MRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIIL---DEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ  280 (457)
Q Consensus       204 ~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLIL---DEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH  280 (457)
                      +.++++.++...   ...++|.++..++.-...+...|-++++   |.+       ....+.++.+...+.|..+|.+|=
T Consensus       182 ~~~~l~~l~~~~---~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-------~~~~l~~l~~~~~~~~~~vv~iSA  251 (397)
T 1wxq_A          182 VWEAMHKLNLPE---DPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-------SDEQIKRLVREEEKRGYIVIPTSA  251 (397)
T ss_dssp             HHHHHHHTTCCS---CGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-------CHHHHHHHHHHHHHTTCEEEEECH
T ss_pred             HHHHHHHhccCC---ccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-------chHHHHHHHHHHhhcCCcEEEEec
Confidence            444555555422   2457899998888777777778999987   443       122333333333334655665554


Q ss_pred             Ch
Q psy10858        281 YI  282 (457)
Q Consensus       281 ~~  282 (457)
                      ..
T Consensus       252 ~~  253 (397)
T 1wxq_A          252 AA  253 (397)
T ss_dssp             HH
T ss_pred             cc
Confidence            33

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=92.13  E-value=0.047  Score=49.80  Aligned_cols=21  Identities=43%  Similarity=0.741  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHH-HHcC
Q psy10858        120 FVLLGASSAGKTTLLKA-IVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~-L~Gl  140 (457)
                      ++|+|+.|+|||||++. +.|.
T Consensus        18 i~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           18 LVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            78999999999999998 5554

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=91.32  E-value=0.027  Score=50.64  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++++|+.|+|||||++.+.+-
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            4789999999999999888653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=91.64  E-value=0.098  Score=52.31  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ..++.|.||+|||||||...|+-..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999998664

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.61  E-value=0.084  Score=52.89  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             CCCChhHHHHHHHHHHh---hc--CCceEEEeCCC
Q psy10858        221 KYLSGGQKRRLSFTIAI---LH--KPQLIILDEPC  250 (457)
Q Consensus       221 ~~LSGGqkQRlsLA~AL---l~--~P~lLILDEPT  250 (457)
                      ..+|+|++||..++++|   ..  ++.++++|||+
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            35899999999999999   66  89999999997

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=91.53  E-value=0.11  Score=50.89  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~~   27 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSNY   27 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999988763

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=91.44  E-value=0.079  Score=54.50  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .++|+|..|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=91.34  E-value=0.055  Score=56.28  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             eeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCC
Q psy10858        110 CSLVVKRREF--FVLLGASSAGKTTLLKAIVGLKNIS  144 (457)
Q Consensus       110 vs~~I~~Gei--~gLlGpNGaGKTTLLk~L~Gll~p~  144 (457)
                      +.-.|..|.+  +.|.||.|+|||||.++|+......
T Consensus        41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            3333444554  7899999999999999999887543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=91.20  E-value=0.019  Score=51.60  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.+++-.
T Consensus        36 i~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           36 LLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999988653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.04  E-value=0.11  Score=49.57  Aligned_cols=23  Identities=39%  Similarity=0.384  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      --.||+|+.||||||+.+.|+-.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            35799999999999999998643

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=91.02  E-value=0.11  Score=51.06  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      +|..+.|.||.|+||||+.+.++..+......+.+.+
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            4668999999999999999999987754333344433

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.87  E-value=0.26  Score=45.47  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=26.9

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +..++..-+. -.|.-+.|.|++|+|||||...|..
T Consensus         4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455555544 4588899999999999999987765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.75  E-value=0.13  Score=50.58  Aligned_cols=26  Identities=27%  Similarity=0.220  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+..+.|.||.|+|||||++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35579999999999999999998754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=90.75  E-value=0.074  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|..|+|||||++.|+|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999964

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=90.69  E-value=0.12  Score=52.63  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++++|..|+|||||++.|+|...
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~~~   33 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGIWT   33 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCccc
Confidence            478999999999999999999643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=90.64  E-value=0.14  Score=53.03  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+++|.||+|||||||.+.|+-.+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999998654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=90.56  E-value=0.11  Score=54.37  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      |=-++|+|+.|+|||||++.|+|.
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            334899999999999999999985

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=90.51  E-value=0.13  Score=49.07  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.-+.|.||.|+||||+.+.++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3457799999999999999999866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	8e-48
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	8e-47
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-42
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	5e-41
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-40
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-40
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-39
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-38
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	3e-38
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	5e-38
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-37
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-36
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-36
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-36
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	5e-36
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-35
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-35
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-35
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	7e-34
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-30
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	5e-15
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-08
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	9e-08

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  162 bits (411), Expect = 8e-48
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 5/207 (2%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           +   +N  +L +K  EF VLLG S  GKTT L+ I GL+  ++G I+        +  K 
Sbjct: 18  NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 77

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
               +  + Q  A++  +T+ E + F   I    +     ++R  + +L++   L R   
Sbjct: 78  R--NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA 135

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQ 280
            LSGGQ++R++   AI+ +P ++++DEP   +D  +R  M   + ++      T I  T 
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195

Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
              EA      +A + +G+++   SP 
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPT 222

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  159 bits (404), Expect = 8e-47
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 3/225 (1%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
              +L   S  ++  E F L+G + AGKTT L+ I  L   S G + V G +     H+ 
Sbjct: 14  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE- 72

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
               + Y+P+E   +  +   E L F    Y    S     + + + +  L   ++  V 
Sbjct: 73  VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 132

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQY 281
             S G  R+L    A++  P+L ILDEP  G+D L  + +  +L+    +G T+++++  
Sbjct: 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 192

Query: 282 IEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT 325
           + E       +A ++ G I+   + +  K +Y    + +VF ++ 
Sbjct: 193 MLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVV 237

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  149 bits (377), Expect = 2e-42
 Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 25/244 (10%)

Query: 74  EEEKEDEGKKEEEEEADEGKNTEKEELKPSNV------VLNNCSLVVKRREFFVLLGASS 127
           EE   +  +K ++   D   ++++  +  S++      VL N +L +++ E   + G++ 
Sbjct: 13  EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTG 72

Query: 128 AGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLN 187
           +GKT+LL  I+G    S+G I   G             +V +  Q   +    TIKE + 
Sbjct: 73  SGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPG-TIKENII 118

Query: 188 FFGMIYGMDESIWLFQMRKYSHVLKLPN-----LERPVKYLSGGQKRRLSFTIAILHKPQ 242
           F            +   +    + K        L      LSGGQ+ R+S   A+     
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178

Query: 243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQ 302
           L +LD P   +D    +++++     +   +T I+ T  +E    A ++  L++G     
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 238

Query: 303 DSPD 306
            +  
Sbjct: 239 GTFS 242

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  144 bits (364), Expect = 5e-41
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 3/207 (1%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           +   +    L V R +   L+GA+ AGKTT L AI GL    +G+I   G    +     
Sbjct: 18  AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77

Query: 163 AGSK-VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPV 220
                +  +P+   +F ELT+ E L          E I       +S   +L   L++  
Sbjct: 78  INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137

Query: 221 KYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQ 280
             LSGG+++ L+   A++ +P+L+++DEP +G+ P++   +++++Q    +G T+++  Q
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197

Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
               A   A     L  G+I+ +    
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKAS 224

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  143 bits (361), Expect = 1e-40
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG----GHPASIYH 160
             L N +L +K  EF  ++G S +GK+T+L  I  L   ++GE+++              
Sbjct: 19  YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE--- 217
           K    K+G++ Q+  +   LT  E +    +           + ++    LK+  LE   
Sbjct: 79  KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138

Query: 218 --RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRT 274
                  LSGGQ++R++   A+ + P +I+ D+P   +D    +++  LL+    + G+T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT 198

Query: 275 VIMTTQYIEEANDASEVAFLYKGRIIAQDSP 305
           V++ T  I  A     + +L  G +  ++  
Sbjct: 199 VVVVTHDINVARFGERIIYLKDGEVEREEKL 229

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  143 bits (363), Expect = 1e-40
 Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 17/236 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG-HPASIYHK 161
               L+  S+ V + +  +++G + +GK+TL+  I G     +G ++            +
Sbjct: 16  EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75

Query: 162 TAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR----------KYSHVL 211
                +    Q      E+T+ E L    +  G      LF  +          K   +L
Sbjct: 76  LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135

Query: 212 KLPNLE----RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQV 267
           +   L     R    LSGGQ + +    A++  P++I++DEP  GV P +   +++ +  
Sbjct: 136 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 195

Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDG-FKSKYSMPKLSDVF 321
              KG T ++    ++   +    +  ++ G+IIA+   +   K+  S PK+ +++
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIY 251

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  140 bits (355), Expect = 2e-39
 Identities = 49/221 (22%), Positives = 104/221 (47%), Gaps = 17/221 (7%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---------- 152
            + VL   SL  +  +   ++G+S +GK+T L+ I  L+  S+G I V G          
Sbjct: 14  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73

Query: 153 ---GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGM-IYGMDESIWLFQMRKYS 208
                      +   +++  + Q   ++  +T+ E +    + + G+ +     +  KY 
Sbjct: 74  GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 133

Query: 209 HVLKLPN--LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQ 266
             + +      +   +LSGGQ++R+S   A+  +P +++ DEP   +DP +   +  ++Q
Sbjct: 134 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 193

Query: 267 VFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
               +G+T+++ T  +  A   +S V FL++G+I  +  P+
Sbjct: 194 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (347), Expect = 1e-38
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
             VV  + +L +   EF V +G S  GK+TLL+ I GL+ I+ G++++            
Sbjct: 12  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PP 69

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
           A   VG + Q  A++  L++ E ++F   + G  + +   ++ + + VL+L + L+R  K
Sbjct: 70  AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 129

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQ 280
            LSGGQ++R++    ++ +P + +LDEP   +D  +R +M   + ++    GRT+I  T 
Sbjct: 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 189

Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
              EA   A ++  L  GR+     P 
Sbjct: 190 DQVEAMTLADKIVVLDAGRVAQVGKPL 216

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  136 bits (345), Expect = 3e-38
 Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 7/211 (3%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH----PASI 158
               +   SL VK  EF +LLG S  GKTT L+ I GL+  S+G+I++           I
Sbjct: 15  EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74

Query: 159 YHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLE- 217
           +       +  + Q  A++  +T+ + + F   +  +       ++R+ + +L L  L  
Sbjct: 75  FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVI 276
           R  + LSGGQ++R++   AI+ KPQ+ ++DEP   +D  +R RM   L ++    G T I
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194

Query: 277 MTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
             T    EA      +A + +G +    SPD
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (344), Expect = 5e-38
 Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG---GHPASIYHKT 162
            LNN SL V   + + ++GAS AGK+TL++ +  L+  ++G + V G      +      
Sbjct: 20  ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVK 221
           A  ++G + Q   +    T+   +     +    +     ++ +   ++ L +  +    
Sbjct: 80  ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 139

Query: 222 YLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQ 280
            LSGGQK+R++   A+   P++++ DE    +DP   + + +LL+      G T+++ T 
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199

Query: 281 YIEEAND-ASEVAFLYKGRIIAQDSPD 306
            ++        VA +  G +I QD+  
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQDTVS 226

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  135 bits (342), Expect = 2e-37
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L + +L +++ E    +G S  GK+TL+  I    +++ G+I + G +       +  +
Sbjct: 33  ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIW--LFQMRKYSHVLKLPNL------E 217
           ++G + Q+  +F   T+KE +   G     DE +         +  ++ LP        E
Sbjct: 93  QIGLVQQDNILF-SDTVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150

Query: 218 RPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           R VK LSGGQK+RLS     L+ P ++ILDE    +D      + + L V   K RT ++
Sbjct: 151 RGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLI 208

Query: 278 TTQYIEEANDASEVAFLYKGRIIAQDSPD 306
               +     A ++  +  G I+   +  
Sbjct: 209 VAHRLSTITHADKIVVIENGHIVETGTHR 237

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  132 bits (333), Expect = 2e-36
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
           +L + S   +        G S  GK+T+   +      + GEI + G    +I  +   S
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY--- 222
           ++G++ Q+ A+    TI+E L +       DE +W      ++        ++       
Sbjct: 77  QIGFVSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135

Query: 223 ----LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMT 278
               +SGGQ++RL+   A L  P++++LDE    +D      +   L   + KGRT ++ 
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVI 194

Query: 279 TQYIEEANDASEVAFLYKGRIIAQDSPD 306
              +    DA ++ F+ KG+I      +
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHN 222

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  131 bits (331), Expect = 3e-36
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 18/225 (8%)

Query: 106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGS 165
            L   S  V+  E   L+G + AGK+TLL  + G+ +  +G I   G    +        
Sbjct: 14  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 72

Query: 166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLS 224
              Y+ Q+        +   L          E      +   +  L L + L R    LS
Sbjct: 73  HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDVAGALALDDKLGRSTNQLS 127

Query: 225 GGQKRRLSFTIAILH-------KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIM 277
           GG+ +R+     +L          QL++LDEP   +D   +  +  +L     +G  ++M
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187

Query: 278 TTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF 321
           ++  +      A     L  G+++A    +      + P L+  +
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEV---LTPPNLAQAY 229

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  130 bits (327), Expect = 3e-36
 Identities = 38/194 (19%), Positives = 89/194 (45%), Gaps = 11/194 (5%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
             VL   ++ +++       G +  GKTTLLK I       +GEI   G     +     
Sbjct: 14  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG-----VPITKV 68

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
             K+ ++P+E+ +  ++++++ L     +YG+  +    ++      +++ +L++ +  L
Sbjct: 69  KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN--EIMDALESVEVLDLKKKLGEL 126

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYI 282
           S G  RR+     +L   ++ +LD+P V +D   + ++   + ++   KG  +I + + +
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 186

Query: 283 EEANDASEVAFLYK 296
              +       L+K
Sbjct: 187 SYCD---VNENLHK 197

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  130 bits (328), Expect = 5e-36
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTA 163
           N  L+N SL V+  E+FV+LG + AGKT  L+ I G      G I + G     +  +  
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK- 71

Query: 164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYL 223
              + ++ Q  ++F  + +K+ L F   +  + +   +    +   +     L+R    L
Sbjct: 72  -HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI--EHLLDRNPLTL 128

Query: 224 SGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYI 282
           SGG+++R++   A++  P++++LDEP   +DP  ++   ++L V   K   TV+  T   
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188

Query: 283 EEAND-ASEVAFLYKGRIIAQDSPD 306
            EA   A  +A +  G++I    P+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPE 213

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  130 bits (328), Expect = 1e-35
 Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 13/238 (5%)

Query: 79  DEGKKE-EEEEAD-EGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKA 136
           DEGK+  +    D E +N            L N +L +   +   L+G S +GK+T+   
Sbjct: 1   DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60

Query: 137 IVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMD 196
           I    +I +G I + G         +  ++V  + Q        T+   + +        
Sbjct: 61  ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN-VHLFNDTVANNIAYARTEEYSR 119

Query: 197 ESIW--LFQMRKYSHVLKLPNL------ERPVKYLSGGQKRRLSFTIAILHKPQLIILDE 248
           E I            + K+ N       E  V  LSGGQ++R++   A+L    ++ILDE
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDE 178

Query: 249 PCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
               +D    + +   L     K RT ++    +     A E+  +  G I+ + +  
Sbjct: 179 ATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 235

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  129 bits (325), Expect = 2e-35
 Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 103 SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT 162
           S V+L+N +L +K+ E   ++G S +GK+TL K I        G++ + G   A      
Sbjct: 15  SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW 74

Query: 163 AGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKY 222
              +VG + Q+  +    +I + ++       +++ I+  ++      +           
Sbjct: 75  LRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133

Query: 223 ------LSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVI 276
                 LSGGQ++R++   A+++ P+++I DE    +D      +   +   + KGRTVI
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVI 192

Query: 277 MTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           +    +    +A  +  + KG+I+ Q    
Sbjct: 193 IIAHRLSTVKNADRIIVMEKGKIVEQGKHK 222

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 2e-35
 Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 101 KPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH 160
           +P  +VL   +  ++  E   L+G + +GK+T+   +  L   + G++ + G       H
Sbjct: 24  RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH 83

Query: 161 KTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH--VLKLPN--- 215
           +    +V  + QE  +FG  +++E + +        E I    ++  +H  +  LP    
Sbjct: 84  RYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142

Query: 216 --LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKG 272
             ++     LSGGQ++ ++   A++ KP ++ILD+    +D   + ++  LL +      
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202

Query: 273 RTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPD 306
           R+V++ TQ++     A  + FL  G I    +  
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 236

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  125 bits (314), Expect = 7e-34
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 93  KNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG 152
           KN  K   K   V L+N ++ ++  E F +LG S AGKTT ++ I GL   S GE++   
Sbjct: 7   KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66

Query: 153 ---GHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSH 209
                   +       K+G + Q  A++  LT  E + F      M +     ++ + + 
Sbjct: 67  RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAK 126

Query: 210 VLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQV 267
           +L + + L    + LSG Q++R++   A++  P L++LDEP   +D  +R     L  +V
Sbjct: 127 ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186

Query: 268 FVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPD 306
               G T+++ +    +    A  V  L KG+++    P+
Sbjct: 187 QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  115 bits (290), Expect = 2e-30
 Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 8/201 (3%)

Query: 109 NCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG 168
           N    + R ++ VLLG + AGK+  L+ I G+    +GE+ + G     +        +G
Sbjct: 17  NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIG 73

Query: 169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQ 227
           ++PQ+ A+F  L++   + +        E     ++R+ +  L + + L+R    LSGG+
Sbjct: 74  FVPQDYALFPHLSVYRNIAYGLRNVERVERDR--RVREMAEKLGIAHLLDRKPARLSGGE 131

Query: 228 KRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLL-QVFVGKGRTVIMTTQYIEEAN 286
           ++R++   A++ +P+L++LDEP   VD   +  + + L  V       ++  T  + EA 
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191

Query: 287 D-ASEVAFLYKGRIIAQDSPD 306
             A EVA +  GRI+ +    
Sbjct: 192 MLADEVAVMLNGRIVEKGKLK 212

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 70.8 bits (172), Expect = 5e-15
 Identities = 23/180 (12%), Positives = 44/180 (24%), Gaps = 25/180 (13%)

Query: 121 VLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGEL 180
           ++ G    GKTTL+K IV          W           +T    +    ++       
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS--- 60

Query: 181 TIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHK 240
                               +              +               ++  A   +
Sbjct: 61  -----------SKFFTSKKLVGSYG----------VNVQYFEELAIPILERAYREAKKDR 99

Query: 241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRII 300
            ++II+DE         + R     Q+       V+ T    +      E+  L    +I
Sbjct: 100 RKVIIIDEIGKMELFSKKFRDLV-RQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.88
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.75
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.42
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.32
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.07
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.97
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.54
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.31
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.69
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.64
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.24
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.13
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.07
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.03
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.02
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.96
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.89
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.83
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.78
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.62
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.62
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.56
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.55
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.52
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.49
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.47
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.47
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.45
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.45
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.42
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.32
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.25
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.25
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.2
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.18
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.15
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.11
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.08
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.06
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.04
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.04
d1okkd2	207	GTPase domain of the signal recognition particle r	96.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.92
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.92
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.9
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.9
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.9
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.88
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.85
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.68
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.66
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.62
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.46
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.45
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.42
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.41
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.38
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.37
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.35
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.34
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.33
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.33
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.29
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.28
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.25
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.24
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.15
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.14
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.09
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.07
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.06
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.0
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.97
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.96
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.94
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.91
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.89
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.82
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.8
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.77
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.69
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.66
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.63
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.61
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.61
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.6
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.52
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.51
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.49
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.49
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.48
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.47
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.46
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.28
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.23
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.22
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.19
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.18
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.04
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.03
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.98
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.89
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.85
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.84
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.84
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.84
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.77
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.75
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.72
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.65
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.64
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.55
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.55
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.53
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.49
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.48
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.48
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.43
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.41
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.4
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.33
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.27
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.26
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.12
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.11
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.07
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.02
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.01
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.01
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.99
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.87
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.86
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.8
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.62
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.56
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.56
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.55
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.53
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.46
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.43
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.39
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.32
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.25
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.23
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.15
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.13
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.07
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.06
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.03
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.96
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.82
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.61
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.55
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	91.42
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.39
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.22
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.98
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.97
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.43
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	90.28
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.26
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.11
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.84
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.7
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.6
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.49
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	89.45
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.9
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.86
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	88.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.42
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.13
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.56
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.39
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.52
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.43
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.35
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	84.53
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	84.04
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	84.02
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	83.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.66
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.33
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	83.01
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.95
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	81.86
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.83
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.64
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	81.54
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.1
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	80.13

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.1e-65  Score=491.19  Aligned_cols=225  Identities=25%  Similarity=0.327  Sum_probs=202.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||+|+||+  +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.....  .+++||
T Consensus         6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig   81 (239)
T d1v43a3           6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS   81 (239)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred             eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc--ccceEE
Confidence            5899999999998  999999999999999999999999999999999999999999999999999876443  346799


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++.+|+.+||+||+.+++..+++++++.++++.++++.++|.. +++++.+|||||||||+|||||+++|+|||||
T Consensus        82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD  161 (239)
T d1v43a3          82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  161 (239)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence            99999999999999999999999999999999999999999999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccH
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKL  317 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l  317 (457)
                      |||+||||.+++.+|++++.+. +.|+|||+||||++++.. ||||++|++|+|++.|+|+++++++..+..
T Consensus       162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~  233 (239)
T d1v43a3         162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV  233 (239)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence            9999999999999999977764 459999999999999975 999999999999999999999987654433

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.8e-64  Score=488.71  Aligned_cols=227  Identities=28%  Similarity=0.359  Sum_probs=209.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCch----hhhc
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYH----KTAG  164 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~----~~~r  164 (457)
                      .|+++||+|+||+  +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.....    ...+
T Consensus         3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~   80 (240)
T d1g2912           3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD   80 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred             cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence            5899999999998  999999999999999999999999999999999999999999999999988754322    1235


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCce
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQL  243 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~l  243 (457)
                      ++||||||+++||+.+||+||+.++..+++.+.++..+++.++++.+++.+ .+++|++|||||||||+|||||+++|++
T Consensus        81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~i  160 (240)
T d1g2912          81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV  160 (240)
T ss_dssp             SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            789999999999999999999999999999999999999999999999965 7999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccH
Q psy10858        244 IILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKL  317 (457)
Q Consensus       244 LILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l  317 (457)
                      |||||||+||||.++..+|++++.+.++ |+|||++|||++++.. ||||++|++|+|++.|+|+++++++..+..
T Consensus       161 LllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~  236 (240)
T d1g2912         161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV  236 (240)
T ss_dssp             EEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred             EEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence            9999999999999999999998776544 9999999999999976 999999999999999999999987654444

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-64  Score=486.61  Aligned_cols=222  Identities=27%  Similarity=0.391  Sum_probs=168.6

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++||+|+||+  +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.....  .+++|||
T Consensus         1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~   76 (232)
T d2awna2           1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM   76 (232)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeee
Confidence            689999999998  999999999999999999999999999999999999999999999999999875442  3578999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      |||++.+|+.+||+||+.++...+++++++.++++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||
T Consensus        77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE  156 (232)
T d2awna2          77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  156 (232)
T ss_dssp             ECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEES
T ss_pred             eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999999999999999999999999998889999999999999965 799999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcc
Q psy10858        249 PCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMP  315 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~  315 (457)
                      ||+||||.++..+|+.+..+ ++.|+|||++|||+++|.. ||||++|++|+|++.|+|+++++++...
T Consensus       157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~  225 (232)
T d2awna2         157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR  225 (232)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCH
Confidence            99999999999999997665 5679999999999999976 9999999999999999999998875433

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.4e-64  Score=486.26  Aligned_cols=229  Identities=26%  Similarity=0.338  Sum_probs=209.1

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---hhhhcC
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---HKTAGS  165 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---~~~~r~  165 (457)
                      .|+++||+|+|++++..||+||||+|++||++||+||||||||||++||+|+++|++|+|+++|+++...+   ....++
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            58999999999644488999999999999999999999999999999999999999999999999875432   123467


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceE
Q psy10858        166 KVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLI  244 (457)
Q Consensus       166 ~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lL  244 (457)
                      +||||||+++||+.+||+||+.++...+++++++.++++.++++.++|.. +++++++|||||||||+|||||+++|++|
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ll  162 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL  162 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccce
Confidence            89999999999999999999999999999999999999999999999965 79999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccH
Q psy10858        245 ILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKL  317 (457)
Q Consensus       245 ILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l  317 (457)
                      ||||||+||||.++..+|++++.+. +.|+|||++|||++++.. ||||++|++|+|++.|+|+++++.+.....
T Consensus       163 llDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~  237 (242)
T d1oxxk2         163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV  237 (242)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred             eecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence            9999999999999999999987764 459999999999999965 999999999999999999999987544433

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.1e-63  Score=478.35  Aligned_cols=234  Identities=25%  Similarity=0.379  Sum_probs=221.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++||+|+||+  +.||+||||+|++||++||+||||||||||||+|+|+++|++|+|.++|+++.... ...++.+|
T Consensus         2 aI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~-~~~~~~i~   78 (238)
T d1vpla_           2 AVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVRKLIS   78 (238)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-HHHHTTEE
T ss_pred             CEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh-HHHHhhEe
Confidence            6899999999999  99999999999999999999999999999999999999999999999999986543 45678899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      |+||++.+|+.+|+.||+.+++.+++.+..+..++++.+++.+++.. .++++++|||||||||+|||||+++|++||||
T Consensus        79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD  158 (238)
T d1vpla_          79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD  158 (238)
T ss_dssp             EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999999999999999999989999999999999964 78999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHHHhhh
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVFYKIT  325 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f~~~~  325 (457)
                      |||+||||.+++.+|++++.++++|+|||+|||+|+++.. ||||++|++|+|++.|+|+++.+++...+++++|.++.
T Consensus       159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~~~f~~~~  237 (238)
T d1vpla_         159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVV  237 (238)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHHHHHHHhh
Confidence            9999999999999999988888889999999999999975 99999999999999999999999998899999998654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=3.6e-63  Score=476.41  Aligned_cols=221  Identities=25%  Similarity=0.412  Sum_probs=201.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      +|+++||+|+|++   .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.....  .+++||
T Consensus         1 mi~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~--~~r~ig   75 (229)
T d3d31a2           1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA   75 (229)
T ss_dssp             CEEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred             CEEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch--hHhcce
Confidence            6899999999986   48999999999999999999999999999999999999999999999999976543  356899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++++|+.+||+||+.|+..+++.+.+   +++.++++.+++.+ +++++.+|||||||||+|||||+++|++||||
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllD  152 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD  152 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             eeccccccCccccHHHHHHHHHhhccccHH---HHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeec
Confidence            999999999999999999999998887653   46788899999965 79999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccH
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKL  317 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l  317 (457)
                      |||+||||.++..+|++++.+ ++.|+|||++|||++++.. ||||++|++|+|++.|+|+++++++....+
T Consensus       153 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v  224 (229)
T d3d31a2         153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV  224 (229)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence            999999999999999997776 4569999999999999976 999999999999999999999887554444

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-63  Score=478.59  Aligned_cols=225  Identities=22%  Similarity=0.311  Sum_probs=207.6

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchh---hh
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHK---TA  163 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~---~~  163 (457)
                      ||+++||+|+|+.++  ..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..   ..
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            689999999998643  2689999999999999999999999999999999999999999999999998754432   34


Q ss_pred             cCcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        164 GSKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       164 r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      |++||||||++++++.+||+||+.+..+++++++++..+++.++++.++|.+ +++++.+|||||||||+|||||+++|+
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred             hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence            5689999999999999999999999999999999999999999999999965 799999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGK-GRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~-g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      +|||||||+||||.++..+|++++.+.++ |+|||++|||++++.. ||||++|++|+|++.|+|+++++++.
T Consensus       161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~  233 (240)
T d3dhwc1         161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK  233 (240)
T ss_dssp             EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSC
T ss_pred             eEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            99999999999999999999998776554 9999999999999976 99999999999999999999987643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=7e-62  Score=470.88  Aligned_cols=232  Identities=22%  Similarity=0.313  Sum_probs=205.7

Q ss_pred             ccCceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hc
Q psy10858         86 EEEADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AG  164 (457)
Q Consensus        86 ~~~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r  164 (457)
                      .+.+|+++||+|+||+  +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....... .+
T Consensus         3 sd~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r   80 (240)
T d1ji0a_           3 SDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR   80 (240)
T ss_dssp             CSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             cceEEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHH
Confidence            3578999999999998  99999999999999999999999999999999999999999999999999987654332 35


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHc-CCC-CCCCCCCCCChhHHHHHHHHHHhhcCCc
Q psy10858        165 SKVGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVL-KLP-NLERPVKYLSGGQKRRLSFTIAILHKPQ  242 (457)
Q Consensus       165 ~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l-~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~  242 (457)
                      ..|+|+||+..+|+.+||+||+.+++..+. +.+...++++++++.+ ++. ..++++++|||||||||+|||||+++|+
T Consensus        81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~  159 (240)
T d1ji0a_          81 MGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             TTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             hcccccCcccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            569999999999999999999988765543 3344555566666665 463 4789999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHHHHH
Q psy10858        243 LIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLSDVF  321 (457)
Q Consensus       243 lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~~~f  321 (457)
                      +|||||||+||||.+++++|++++.++++|+|||++|||++++.. ||||++|++|+|+++|+|+++.++   +.+.++|
T Consensus       160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~---~~v~~~y  236 (240)
T d1ji0a_         160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN---EMVRKAY  236 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC---HHHHHHH
T ss_pred             EeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC---HHHHHHh
Confidence            999999999999999999999988888889999999999999965 999999999999999999999864   5678888


Q ss_pred             Hh
Q psy10858        322 YK  323 (457)
Q Consensus       322 ~~  323 (457)
                      +.
T Consensus       237 lG  238 (240)
T d1ji0a_         237 LG  238 (240)
T ss_dssp             SC
T ss_pred             Cc
Confidence            64

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.3e-61  Score=462.45  Aligned_cols=217  Identities=23%  Similarity=0.337  Sum_probs=195.8

Q ss_pred             ceEEEeeEEEeCCCC--ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh----
Q psy10858         89 ADEGKNTEKEELKPS--NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT----  162 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~--~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~----  162 (457)
                      ||+++||+|+|+.++  ..||+||||+|++||++||+||||||||||++||+|+++|++|+|+++|+++...+...    
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            689999999997543  34899999999999999999999999999999999999999999999999987654332    


Q ss_pred             hcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHHHHHHh
Q psy10858        163 AGSKVGYMPQELAMFGELTIKETLNFFGMIY---GMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLSFTIAI  237 (457)
Q Consensus       163 ~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~---g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRlsLA~AL  237 (457)
                      .+++||||||++.+++.+||+||+.+...+.   +.+.++..+++.++++.++|+.  ++++|.+|||||||||+|||||
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL  160 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence            2457999999999999999999999877654   4567778888999999999964  6899999999999999999999


Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecCh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFV-GKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSP  305 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~-~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~  305 (457)
                      +++|++|||||||+||||.+++.+|++++.+. +.|+|||++|||+++|+.||||++|++|+|+++|++
T Consensus       161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            99999999999999999999999999987765 459999999999999977999999999999999865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.7e-61  Score=470.33  Aligned_cols=230  Identities=23%  Similarity=0.333  Sum_probs=209.3

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCc---------
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIY---------  159 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~---------  159 (457)
                      .|+++||+|+||+  +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++....         
T Consensus         2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   79 (258)
T d1b0ua_           2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   79 (258)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence            5899999999998  89999999999999999999999999999999999999999999999999875321         


Q ss_pred             ----hhhhcCcEEEEcCCCCCCCCCCHHHHHHHh-hhhcCCCHHHHHHHHHHHHhHcCCCC--CCCCCCCCChhHHHHHH
Q psy10858        160 ----HKTAGSKVGYMPQELAMFGELTIKETLNFF-GMIYGMDESIWLFQMRKYSHVLKLPN--LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       160 ----~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~-~~l~g~~~~~~~~~~~~ll~~l~L~~--~~~~~~~LSGGqkQRls  232 (457)
                          ....+++||||||++.+++.+||.||+.++ ....+.+..+..+++.++++.+++..  .+++|.+|||||||||+
T Consensus        80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~  159 (258)
T d1b0ua_          80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  159 (258)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence                123457899999999999999999999886 45667888889999999999999964  47889999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+.+|++|||||||+||||.++++++++++.++++|+|||++|||++++.. ||||++|++|+|++.|+|++++++
T Consensus       160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~  239 (258)
T d1b0ua_         160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  239 (258)
T ss_dssp             HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999999988888889999999999999975 999999999999999999999987


Q ss_pred             CCcccHHHH
Q psy10858        312 YSMPKLSDV  320 (457)
Q Consensus       312 ~~~~~l~~~  320 (457)
                      +..+...+.
T Consensus       240 P~~~~~~~l  248 (258)
T d1b0ua_         240 PQSPRLQQF  248 (258)
T ss_dssp             CCSHHHHHH
T ss_pred             CCCHHHHHH
Confidence            665555543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.6e-60  Score=464.75  Aligned_cols=233  Identities=21%  Similarity=0.297  Sum_probs=203.9

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhh-hcCc
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKT-AGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~-~r~~  166 (457)
                      .+|+++||+|+||+  +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+... .+..
T Consensus         3 ~iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_           3 EILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             ceEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence            37999999999998  99999999999999999999999999999999999999999999999999987655433 3456


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhc-------------CCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHH
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIY-------------GMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLS  232 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~-------------g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRls  232 (457)
                      |||+||++.+|+.+||+||+.+.....             ...++...+++.++++.+++.. .++++++|||||||||+
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~  160 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE  160 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHH
Confidence            999999999999999999998754321             1234455677888999999964 78999999999999999


Q ss_pred             HHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhc
Q psy10858        233 FTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       233 LA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |||||+++|++|||||||+||||.+++.+|++++.++++|+|||++||||+++.. ||||++|++|+|+++|+|+++..+
T Consensus       161 iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~  240 (254)
T d1g6ha_         161 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN  240 (254)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHH
T ss_pred             HHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhc
Confidence            9999999999999999999999999999999988888889999999999999965 999999999999999999986543


Q ss_pred             C-CcccHHHHHH
Q psy10858        312 Y-SMPKLSDVFY  322 (457)
Q Consensus       312 ~-~~~~l~~~f~  322 (457)
                      . ..+.+.++|+
T Consensus       241 ~~~~~~v~~~yl  252 (254)
T d1g6ha_         241 VLSDPKVVEIYI  252 (254)
T ss_dssp             HHHCHHHHHTTT
T ss_pred             ccCCHHHHHccC
Confidence            2 2234555554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.1e-58  Score=447.71  Aligned_cols=215  Identities=25%  Similarity=0.390  Sum_probs=195.2

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .+++ ++.|+||+  +.+  ||||+++ ||+++|+||||||||||+|+|+|+++|++|+|+++|+++.....  .+++||
T Consensus         2 ~l~v-~~~k~~g~--~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~--~~r~ig   73 (240)
T d2onka1           2 FLKV-RAEKRLGN--FRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIG   73 (240)
T ss_dssp             CEEE-EEEEEETT--EEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT--TTSCCB
T ss_pred             EEEE-EEEEEECC--EEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH--HHcCce
Confidence            4677 67999998  654  8999995 68999999999999999999999999999999999999876543  357899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEe
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILD  247 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILD  247 (457)
                      ||||++++|+.+||+||+.|+.  ++.++.+..+++.++++.++|.+ +++++++|||||||||+|||||+++|++||||
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD  151 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD  151 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred             eeccchhhcccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEec
Confidence            9999999999999999999864  45677788889999999999965 89999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCC
Q psy10858        248 EPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYS  313 (457)
Q Consensus       248 EPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~  313 (457)
                      |||+||||..+..+|++++.+.+ .|+|||++|||+++|.. ||||++|++|+|++.|+|+++.+..+
T Consensus       152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~  219 (240)
T d2onka1         152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN  219 (240)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCC
Confidence            99999999999999999877654 59999999999999976 99999999999999999999987643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-55  Score=426.21  Aligned_cols=219  Identities=22%  Similarity=0.307  Sum_probs=187.9

Q ss_pred             eEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEE
Q psy10858         90 DEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGY  169 (457)
Q Consensus        90 Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGy  169 (457)
                      |+++||+++|...+..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+....|++|||
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            78999999997655789999999999999999999999999999999999999999999999999988777778889999


Q ss_pred             EcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH--HHhHcC-CC-----CCCCCCCCCChhHHHHHHHHHHhhcCC
Q psy10858        170 MPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK--YSHVLK-LP-----NLERPVKYLSGGQKRRLSFTIAILHKP  241 (457)
Q Consensus       170 vpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~--ll~~l~-L~-----~~~~~~~~LSGGqkQRlsLA~ALl~~P  241 (457)
                      |||++.+|+ .||+||+.++...  .+.++.....+.  +.+.+. ++     ..++.+.+|||||||||+|||||+.+|
T Consensus        82 v~Q~~~lf~-~Ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          82 VLQDNVLLN-RSIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             ECSSCCCTT-SBHHHHHCTTSTT--CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EecccccCC-ccccccccccCcc--ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            999999885 5999999875432  333333222221  222222 12     135677899999999999999999999


Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      +|||||||||+||+.+++.|++.++.+. +|+|||++||+++.+..||||++|++|+|++.|++++++++.
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~  228 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP  228 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            9999999999999999999999988764 489999999999999889999999999999999999998763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-56  Score=430.50  Aligned_cols=223  Identities=19%  Similarity=0.245  Sum_probs=188.6

Q ss_pred             CceEEEeeEEEeCCC-CceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCc
Q psy10858         88 EADEGKNTEKEELKP-SNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSK  166 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~-~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~  166 (457)
                      ..|+++||+++|++. +..||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+....|++
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   89 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ   89 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence            369999999999752 3569999999999999999999999999999999999999999999999999877766677889


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHH-----HHHHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhh
Q psy10858        167 VGYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQ-----MRKYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAIL  238 (457)
Q Consensus       167 IGyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~-----~~~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl  238 (457)
                      ||||||++.+|+ .||+||+.++.... .......+.     ..+.++.+  ++. ..++.+.+|||||||||+|||||+
T Consensus        90 i~~v~Q~~~lf~-~tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          90 VAAVGQEPQVFG-RSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             EEEECSSCCCCS-SBHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             hhhccccccccC-cchhhhhhhhhccc-chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            999999999986 59999998753322 122222111     12223333  222 246778899999999999999999


Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhcC
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVG-KGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSKY  312 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~-~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~~  312 (457)
                      ++|+|||||||||+||+.++..+++.+..+.+ .|+|||++||+++.++.||||++|++|+|++.|++++++++.
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~  242 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK  242 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            99999999999999999999999999876644 489999999999999889999999999999999999998763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.1e-56  Score=431.70  Aligned_cols=219  Identities=21%  Similarity=0.326  Sum_probs=185.3

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      ||+++||+++|++. +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....|++||
T Consensus         1 mle~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence            68999999999653 57999999999999999999999999999999999999999999999999998766666788999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHH--hHc-CCCC-----CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYS--HVL-KLPN-----LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll--~~l-~L~~-----~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      ||||++.+|+. ||+||+.+.... ..+.....+..+...  +.. .++.     ..+.+.+|||||||||+|||||+++
T Consensus        80 ~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~  157 (242)
T d1mv5a_          80 FVSQDSAIMAG-TIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN  157 (242)
T ss_dssp             EECCSSCCCCE-EHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEccccccCCc-chhhheeccccc-ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999999876 999999764332 123333322222211  111 1111     2345678999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+|||||||||+||+.+++.+++.++.+. +|+|||++||+++.+..||||++|++|+|++.|++++++++
T Consensus       158 p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         158 PKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             CSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             CCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999988875 58999999999999988999999999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.4e-54  Score=419.83  Aligned_cols=220  Identities=20%  Similarity=0.284  Sum_probs=189.6

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||+++|++.+..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+....+++||
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   92 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA   92 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence            59999999999875567999999999999999999999999999999999999999999999999998777677788899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHH-----HHHhHc--CCC-CCCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMR-----KYSHVL--KLP-NLERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~-----~ll~~l--~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      |+||++.+|.. |+++|+.+. .....+.+++.+..+     +.++.+  ++. ..++.+.+|||||||||+|||||+++
T Consensus        93 ~v~Q~~~l~~~-ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~  170 (253)
T d3b60a1          93 LVSQNVHLFND-TVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  170 (253)
T ss_dssp             EECSSCCCCSS-BHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEeeccccCCc-chhhhhhhc-CcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            99999998864 999999865 223344444333221     222232  232 24567889999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+|||||||||+||+.+++.|++.++.+. +++|||+|||+++.++.||||++|++|+|++.|+|++++++
T Consensus       171 p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         171 SPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ  240 (253)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999988875 48999999999999888999999999999999999999976

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=7.8e-54  Score=417.70  Aligned_cols=215  Identities=21%  Similarity=0.334  Sum_probs=186.4

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||+++|++....+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+....|++||
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   95 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG   95 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence            59999999999875567999999999999999999999999999999999999999999999999987766677888999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcC-------CCC-----CCCCCCCCChhHHHHHHHHHH
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLK-------LPN-----LERPVKYLSGGQKRRLSFTIA  236 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~-------L~~-----~~~~~~~LSGGqkQRlsLA~A  236 (457)
                      ||||++.+|+ .||+||+.++..  ....++..+    +++..+       ++.     ....+.+|||||||||+||||
T Consensus        96 ~v~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~~~~----al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa  168 (255)
T d2hyda1          96 LVQQDNILFS-DTVKENILLGRP--TATDEEVVE----AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI  168 (255)
T ss_dssp             EECSSCCCCS-SBHHHHHGGGCS--SCCHHHHHH----HHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred             eeeccccCCC-CCHHHHHhccCc--CCCHHHHHH----HHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHH
Confidence            9999999885 599999987532  123333322    233222       221     234567899999999999999


Q ss_pred             hhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        237 ILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       237 Ll~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+++|+|||||||||+||+.++..|++.++.+. +++|||++||+++.+..||||++|++|+|++.|++++++++
T Consensus       169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         169 FLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK  242 (255)
T ss_dssp             HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred             HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999988764 48999999999999888999999999999999999999876

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-52  Score=400.43  Aligned_cols=219  Identities=21%  Similarity=0.297  Sum_probs=190.5

Q ss_pred             CceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcE
Q psy10858         88 EADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKV  167 (457)
Q Consensus        88 ~~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~I  167 (457)
                      .+++++|++++      .+|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++........+...
T Consensus         2 ~il~~~dv~~~------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~   74 (231)
T d1l7vc_           2 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR   74 (231)
T ss_dssp             EEEEEEEECCT------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred             eEEEEECcccC------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence            47899999754      3599999999999999999999999999999999976 6899999999988665555556679


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhc-------
Q psy10858        168 GYMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILH-------  239 (457)
Q Consensus       168 GyvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~-------  239 (457)
                      +|++|+.......++++++.++..-     +...+.++++++.+++.. .++++++|||||||||+|||||++       
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p  149 (231)
T d1l7vc_          75 AYLSQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP  149 (231)
T ss_dssp             EEECSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred             eeeeccccCCccccHHHHhhhccch-----hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCC
Confidence            9999998877778999998765332     122345677888899954 799999999999999999999997       


Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhc-cCeEEEEeCCeEEEecChhhhhhcCCcccHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEAND-ASEVAFLYKGRIIAQDSPDGFKSKYSMPKLS  318 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~-~dri~im~~GkI~~~gs~~~l~~~~~~~~l~  318 (457)
                      +|+||||||||+||||.++..++++++.++++|+|||+||||++++.. |||+++|++|++++.|+++++++.   +.+.
T Consensus       150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~---~~l~  226 (231)
T d1l7vc_         150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP---PNLA  226 (231)
T ss_dssp             TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH---HHHH
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC---hHHH
Confidence            779999999999999999999999999888899999999999999865 999999999999999999999764   5677


Q ss_pred             HHH
Q psy10858        319 DVF  321 (457)
Q Consensus       319 ~~f  321 (457)
                      ++|
T Consensus       227 ~~y  229 (231)
T d1l7vc_         227 QAY  229 (231)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            776

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-50  Score=395.65  Aligned_cols=201  Identities=25%  Similarity=0.309  Sum_probs=163.5

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .+.+++++  |.+  ++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|             +|+
T Consensus        38 ~i~~~~~~--~~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~  100 (281)
T d1r0wa_          38 NVSFSHLC--LVG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS  100 (281)
T ss_dssp             --CHHHHH--HTT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred             cEEEEEcC--CCC--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence            44445444  345  7899999999999999999999999999999999999999999999876             489


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHH---HHhHcCCCC-----CCCCCCCCChhHHHHHHHHHHhhcC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRK---YSHVLKLPN-----LERPVKYLSGGQKRRLSFTIAILHK  240 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~---ll~~l~L~~-----~~~~~~~LSGGqkQRlsLA~ALl~~  240 (457)
                      |+||++.+++. ||+||+.++...   .........+.   ......++.     .++.+.+|||||||||+|||||+++
T Consensus       101 ~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~  176 (281)
T d1r0wa_         101 FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD  176 (281)
T ss_dssp             EECSSCCCCSE-EHHHHHTTTSCC---CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred             EEeccccccCc-eeeccccccccc---cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhC
Confidence            99999999875 999999765322   22222222211   111222321     3466778999999999999999999


Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhccCeEEEEeCCeEEEecChhhhhhc
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEANDASEVAFLYKGRIIAQDSPDGFKSK  311 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~~dri~im~~GkI~~~gs~~~l~~~  311 (457)
                      |+||||||||++||+.+++.+++. +... ..|+|+|++||+++.++.||||++|++|+|++.|+++++.+.
T Consensus       177 p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~  247 (281)
T d1r0wa_         177 ADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL  247 (281)
T ss_dssp             CSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             ccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence            999999999999999999999987 4443 468999999999998888999999999999999999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=6.1e-49  Score=369.93  Aligned_cols=195  Identities=20%  Similarity=0.300  Sum_probs=168.9

Q ss_pred             ceEEEeeEEEeCCCCceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEE
Q psy10858         89 ADEGKNTEKEELKPSNVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVG  168 (457)
Q Consensus        89 ~Iei~nlsk~yg~~~~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IG  168 (457)
                      .|+++||+++|+   +.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..     .+.+++
T Consensus         2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred             eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEE
Confidence            489999999995   469999999999999999999999999999999999999999999999988742     456899


Q ss_pred             EEcCCCCCCCCCCHHHHHHHhhhhcCCCHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeC
Q psy10858        169 YMPQELAMFGELTIKETLNFFGMIYGMDESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDE  248 (457)
Q Consensus       169 yvpQ~~~L~~~lTV~EnL~~~~~l~g~~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDE  248 (457)
                      |+||+..++..+|+.+++.+.+.+++....  .+.+.++++.+++...++++++|||||||||+|||||+++|++|||||
T Consensus        74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE  151 (200)
T d1sgwa_          74 FLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD  151 (200)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred             EEeecccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC
Confidence            999999999999999999998888875432  233556677787755678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHhccCeEEEEeC
Q psy10858        249 PCVGVDPLVRKRMWDLLQVF-VGKGRTVIMTTQYIEEANDASEVAFLYK  296 (457)
Q Consensus       249 PTsGLDp~~r~~i~~~i~~~-~~~g~TIIisTH~~~ea~~~dri~im~~  296 (457)
                      ||+|||+.+++.+|+.+... ++.|++||.++|+++   .||++.+|++
T Consensus       152 Pt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~---~~D~~~~l~~  197 (200)
T d1sgwa_         152 PVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS---YCDVNENLHK  197 (200)
T ss_dssp             TTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT---TSSEEEEGGG
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh---hcchhhheee
Confidence            99999999999999986554 455777777777763   5899888764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.75  E-value=1.9e-20  Score=166.61  Aligned_cols=155  Identities=19%  Similarity=0.190  Sum_probs=102.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCC----CCCCCCHHHHHHHhhhhcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELA----MFGELTIKETLNFFGMIYGM  195 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~----L~~~lTV~EnL~~~~~l~g~  195 (457)
                      ++|+||||||||||+++|+|.++++.|.+.+.+.+....     ..++++..+...    .....+...... ..+ ++.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~   75 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET-----KKRTGFRIITTEGKKKIFSSKFFTSKKL-VGS-YGV   75 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEEEEETTCCEEEEEETTCCCSSE-ETT-EEE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH-----HHhhhhhhhhhhHHHHHHhhhhhhhhhh-hhh-hhc
Confidence            789999999999999999999999999999987654322     122333221110    000000000000 000 011


Q ss_pred             CHHHHHHHHHHHHhHcCCCCCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcE
Q psy10858        196 DESIWLFQMRKYSHVLKLPNLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRT  274 (457)
Q Consensus       196 ~~~~~~~~~~~ll~~l~L~~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~T  274 (457)
                                           +....++|+|+++|.++++|+.++|++|++|||...  ......+++. .+.+.+.+.+
T Consensus        76 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~  132 (178)
T d1ye8a1          76 ---------------------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVN  132 (178)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSE
T ss_pred             ---------------------CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCE
Confidence                                 112234889999999999999999999999998543  3344556666 4444556899


Q ss_pred             EEEEcCChhHHhccCeEEEEeCCeEEEecC
Q psy10858        275 VIMTTQYIEEANDASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       275 IIisTH~~~ea~~~dri~im~~GkI~~~gs  304 (457)
                      ||+++|+.+....++++..+.+|+++..+.
T Consensus       133 il~~~h~~~~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         133 VVATIPIRDVHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             EEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred             EEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence            999999976556689999999999987653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=4.9e-11  Score=114.00  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=65.6

Q ss_pred             CCCCCChhHHHHHHHHHHh----hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEE-
Q psy10858        219 PVKYLSGGQKRRLSFTIAI----LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAF-  293 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~AL----l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~i-  293 (457)
                      ....+|+|+|+.+.++.++    ...|.++++|||-++|+|...+.+.++++... ++.-||+|||+.+.++.+|+++. 
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~~~~~~d~~~~v  294 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLLHGV  294 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHHhcccEEEE
Confidence            4567999999998776653    45789999999999999999999999987764 46789999999999988999865 


Q ss_pred             -EeCC
Q psy10858        294 -LYKG  297 (457)
Q Consensus       294 -m~~G  297 (457)
                       |.+|
T Consensus       295 ~~~~g  299 (308)
T d1e69a_         295 TMVNG  299 (308)
T ss_dssp             EESSS
T ss_pred             EEeCC
Confidence             5555

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=6.7e-10  Score=109.44  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=64.0

Q ss_pred             CCCCCChhHHHHHHHHHHh----hcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCeEEEE
Q psy10858        219 PVKYLSGGQKRRLSFTIAI----LHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASEVAFL  294 (457)
Q Consensus       219 ~~~~LSGGqkQRlsLA~AL----l~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dri~im  294 (457)
                      ....||||||.++++|..+    ..++++++||||+++||+..+..+.+++......+.-+|+|||+...+..||+++.+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            3467899999998877544    457789999999999999999999999877655566799999999999999997654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.54  E-value=7e-07  Score=83.18  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=41.2

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCChhHHhc
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDL-LQVFVGKGRTVIMTTQYIEEAND  287 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~-i~~~~~~g~TIIisTH~~~ea~~  287 (457)
                      .+..++|+||+..|=||.....+... ++.+.+.+..++++||+.+....
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence            55679999999999999988887555 88887778899999999877654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.7e-06  Score=79.51  Aligned_cols=49  Identities=14%  Similarity=0.138  Sum_probs=38.2

Q ss_pred             hcCCceEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCcEEEEEcCChhHHh
Q psy10858        238 LHKPQLIILDEPCVGVDPLVRKRMWD-LLQVFVG-KGRTVIMTTQYIEEAN  286 (457)
Q Consensus       238 l~~P~lLILDEPTsGLDp~~r~~i~~-~i~~~~~-~g~TIIisTH~~~ea~  286 (457)
                      +.+..++|+||+..|=+|.....+.. +++.+.. .+..+|++||+.+...
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            44556999999999999999988754 4766644 4678999999987653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=2.6e-06  Score=73.33  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             EeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        107 LNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       107 L~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++.+|++.+| +++|+|+|||||||+|.+|.-.+
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            67888888776 99999999999999999997443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=6.8e-05  Score=65.73  Aligned_cols=26  Identities=27%  Similarity=0.393  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      |.++.|+||+||||||+++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=1.7e-05  Score=67.51  Aligned_cols=36  Identities=22%  Similarity=0.167  Sum_probs=29.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCcc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGH  154 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~  154 (457)
                      .+.|.||+|+|||||++.++..+....+.+.+.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~   38 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE   38 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            478999999999999999999987776666554433

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=8.6e-05  Score=62.83  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999986543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.0001  Score=71.37  Aligned_cols=28  Identities=21%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        111 SLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       111 s~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      .+++..+.+.+|+|+|||||||+|.+|.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3444556699999999999999999984

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0014  Score=60.14  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=74.3

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHH
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKE  184 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~E  184 (457)
                      .++.++    -+|+++.|.|+.|+|||||+--|+--+.  +|.=+ .+....      ...++-|+.-+...-   .+.+
T Consensus        21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~-~~~~~~------~~~~vl~~~~E~~~~---~~~~   84 (274)
T d1nlfa_          21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL------PTGPVIYLPAEDPPT---AIHH   84 (274)
T ss_dssp             EEETTE----ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC------CCCCEEEEESSSCHH---HHHH
T ss_pred             HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHHHHHH--cCCCc-cccccc------CCCceEEEeccchHH---HHHH
Confidence            456653    4699999999999999999876653221  11111 121111      123466655332110   1122


Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCC-----CCCHHHH
Q psy10858        185 TLNFFGMIYGMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCV-----GVDPLVR  258 (457)
Q Consensus       185 nL~~~~~l~g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTs-----GLDp~~r  258 (457)
                      .+  .....+.+......    ....+.+. ..+......   ..+.+.-..+-+++|+++++|--++     --|....
T Consensus        85 Rl--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~  155 (274)
T d1nlfa_          85 RL--HALGAHLSAEERQA----VADGLLIQPLIGSLPNIM---APEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPM  155 (274)
T ss_dssp             HH--HHHHTTSCHHHHHH----HHHHEEECCCTTSCCCTT---SHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHH
T ss_pred             HH--HHHhhccChhhhhc----ccccceeccccCccchhH---HHHHHHHHHHhccCccEEecCchhhhccccccchhhH
Confidence            11  11122333322211    11222221 111111112   2222222334467999999995432     1255555


Q ss_pred             HHHHHHHHH-HHhCCcEEEEEcCC
Q psy10858        259 KRMWDLLQV-FVGKGRTVIMTTQY  281 (457)
Q Consensus       259 ~~i~~~i~~-~~~~g~TIIisTH~  281 (457)
                      ..++..+.. ..+.|++||++.|-
T Consensus       156 ~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         156 AQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HHHHHHHHHHhhcCCCceehhhhc
Confidence            566666544 44569999999884

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00014  Score=67.35  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      +|+..+++|+||+|||||++.|.|-.....|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            58999999999999999999999987777777753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00014  Score=61.84  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.+.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998755

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.02  E-value=0.00019  Score=61.02  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .|+++.|.||+||||||+.+.|+..+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.96  E-value=0.00037  Score=64.40  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             ceeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        104 NVVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       104 ~~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      ...|+.+..-+.+|+++.|.|++|+||||++.-|+
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            44577666568999999999999999999988776

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.89  E-value=0.00021  Score=60.33  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=24.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|-++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999998554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.86  E-value=0.00013  Score=62.64  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      .+++|+|++|||||||++-|...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999988776654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.00014  Score=67.64  Aligned_cols=35  Identities=31%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      +|...+|+|+||+|||||++.|.|-.....|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            58899999999999999999999987777787763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.78  E-value=0.0045  Score=55.30  Aligned_cols=133  Identities=16%  Similarity=0.051  Sum_probs=68.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhc
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIY  193 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~  193 (457)
                      +++|.++.|.|++|+||||+..-++--..-                   ....+.|+.-      +.+..+.... +.-+
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~-------------------~~~~~~~is~------e~~~~~~~~~-~~~~   76 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACA-------------------NKERAILFAY------EESRAQLLRN-AYSW   76 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHT-------------------TTCCEEEEES------SSCHHHHHHH-HHTT
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-------------------hccccceeec------cCCHHHHHHH-HHHc
Confidence            789999999999999999998766433110                   0123444432      2344433322 2223


Q ss_pred             CCCHHHHHHHHHHHHhHcCCC-CCCCCCCCCChhHHHHHHHHHH-hhcCCceEEEeCCCC---CCCHHHHHHHHHH-HHH
Q psy10858        194 GMDESIWLFQMRKYSHVLKLP-NLERPVKYLSGGQKRRLSFTIA-ILHKPQLIILDEPCV---GVDPLVRKRMWDL-LQV  267 (457)
Q Consensus       194 g~~~~~~~~~~~~ll~~l~L~-~~~~~~~~LSGGqkQRlsLA~A-Ll~~P~lLILDEPTs---GLDp~~r~~i~~~-i~~  267 (457)
                      +.+....       . ..+.. ..+.........+.-. .+..+ --.+|++++.|--++   +.+......+... .+.
T Consensus        77 ~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~  147 (242)
T d1tf7a2          77 GMDFEEM-------E-RQNLLKIVCAYPESAGLEDHLQ-IIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGY  147 (242)
T ss_dssp             SCCHHHH-------H-HTTSEEECCCCGGGSCHHHHHH-HHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred             CCChHHH-------h-hcCceEEEEeecchhhHHHHHH-HHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHH
Confidence            3332211       1 11111 1122222222222211 12222 235799999996433   3455554444444 566


Q ss_pred             HHhCCcEEEEEcCC
Q psy10858        268 FVGKGRTVIMTTQY  281 (457)
Q Consensus       268 ~~~~g~TIIisTH~  281 (457)
                      +++.+.+++++.|-
T Consensus       148 ~~~~~~~~i~~~~~  161 (242)
T d1tf7a2         148 AKQEEITGLFTNTS  161 (242)
T ss_dssp             HHHTTCEEEEEEEC
T ss_pred             HHHcCCeEEEEEee
Confidence            66789999998874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00038  Score=62.96  Aligned_cols=27  Identities=22%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +|.++.|+||+|+|||||++.|.-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            589999999999999999998876654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.62  E-value=0.00049  Score=58.28  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|-.+.|.||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.62  E-value=0.00045  Score=58.29  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|.||.|||||||.+.|+-.+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999865

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0058  Score=53.05  Aligned_cols=44  Identities=18%  Similarity=0.138  Sum_probs=28.8

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .+-.-+|+|  .++++...|..++++.+.. .-...++....+.+.+
T Consensus        63 ~~g~~vIiD--~t~~~~~~R~~~~~~a~~~-~~~~~~v~l~~~~e~~  106 (172)
T d1yj5a2          63 RQGKRVVID--NTNPDVPSRARYIQCAKDA-GVPCRCFNFCATIEQA  106 (172)
T ss_dssp             HTTCCEEEE--SCCCSHHHHHHHHHHHHHH-TCCEEEEEECCCHHHH
T ss_pred             HCCCCceee--CcCCCHHHHHHHHHHHHhc-CCCEEEEEeCCCHHHH
Confidence            344567888  5678888888877775543 2245566666677765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.56  E-value=0.0006  Score=57.44  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.55  E-value=0.00059  Score=57.83  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      +.+++|.|+.||||||+.+.|+-.+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999865543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.52  E-value=0.00059  Score=56.75  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      +++.|.|++|||||||.+-|..-   ..|.+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh---CCCCEEech
Confidence            47889999999999999977532   224555543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0047  Score=57.46  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -+.|.||.|+|||++.+.|+..+
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHHc
Confidence            37799999999999999999865

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0006  Score=56.25  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+||+||||||+-+.|+-.+
T Consensus         5 I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6688999999999999998654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.47  E-value=0.0021  Score=56.37  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHH
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAI  137 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L  137 (457)
                      +++|+++.|.|++|+|||||.--+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            899999999999999999997533

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.47  E-value=0.00063  Score=58.55  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++||-|++|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999986543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0021  Score=60.00  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .-+-|.||+|+|||+|.+.|++.+
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            337799999999999999999877

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.45  E-value=0.00054  Score=59.98  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.|+|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            39999999999999999999964

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00059  Score=58.88  Aligned_cols=26  Identities=38%  Similarity=0.291  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +|-++.|.|++||||||+-+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999997654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.37  E-value=0.00081  Score=56.21  Aligned_cols=32  Identities=19%  Similarity=0.498  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLG  152 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G  152 (457)
                      .++.|.||+||||||+.+.|+..+.   +.+++.|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            3788999999999999999997653   3444444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.32  E-value=0.00085  Score=59.92  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.0016  Score=56.17  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +||+|..|+|||||++.|+|..
T Consensus        11 V~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999999853

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.25  E-value=0.00095  Score=56.10  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|.||.||||||+.+.|+--
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.001  Score=58.40  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +.|+||+|||||||++.|.-..+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999976653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.18  E-value=0.00099  Score=57.14  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|+|||||++.|+|-.
T Consensus         3 I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999853

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.17  E-value=0.00082  Score=56.94  Aligned_cols=23  Identities=43%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|++|||||||++.|+|-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0013  Score=56.18  Aligned_cols=22  Identities=36%  Similarity=0.786  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +++|+|..|+|||||++.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.11  E-value=0.0063  Score=56.17  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|.||.|+|||+|.+.|+...
T Consensus        45 iLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEecCCCCChhHHHHHHHHHc
Confidence            6799999999999999999754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0012  Score=54.38  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|++|+|||||++.|.|-.
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5699999999999999999853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.06  E-value=0.00084  Score=58.09  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0014  Score=57.91  Aligned_cols=22  Identities=50%  Similarity=0.631  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+||+|||||||++.|.-..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999999987653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0016  Score=55.65  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999853

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.00  E-value=0.0013  Score=59.73  Aligned_cols=57  Identities=18%  Similarity=0.228  Sum_probs=36.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG  194 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g  194 (457)
                      ++.++.++||+|+||||++-=|+-.+.-                   .+++|+++.=+..   ..-..|.|..++...+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~-------------------~g~kV~lit~Dt~---R~gA~eQL~~~a~~l~   61 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-------------------LGKKVMFCAGDTF---RAAGGTQLSEWGKRLS   61 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT-------------------TTCCEEEECCCCS---STTHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH-------------------CCCcEEEEEeccc---cccchhhHhhcccccC
Confidence            5789999999999999987666643210                   1245777765432   2345666665554433

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0019  Score=56.75  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ..+.|+||+|+|||||++-|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999888543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0019  Score=55.65  Aligned_cols=23  Identities=39%  Similarity=0.839  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|+|..|+|||||++.|+|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0024  Score=54.41  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=24.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +++|+++.|.||+|+|||||.-.++.-
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998877653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.91  E-value=0.0018  Score=54.92  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999997764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.0013  Score=56.61  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +||+|..|+|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.90  E-value=0.0019  Score=56.22  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +..++.|+||.||||||+.+.|+--
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.90  E-value=0.0016  Score=54.12  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|..|||||||++.+++-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.90  E-value=0.0016  Score=53.83  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+|+.|||||||++.+++-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999997643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.88  E-value=0.0015  Score=57.26  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999998644

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0019  Score=57.17  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++||-|+.||||||+.+.|.-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0021  Score=56.06  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|+|+.|||||||++.|+|-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.68  E-value=0.0024  Score=54.53  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+|+.||||||+-|+|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5788999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0029  Score=52.96  Aligned_cols=23  Identities=39%  Similarity=0.638  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -++|+|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999863

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.0027  Score=55.39  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +-.++.|+||.||||||+.+.|+--+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            44579999999999999999998765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0017  Score=55.18  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|..++|||||++.|+|..
T Consensus        19 I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          19 VAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.46  E-value=0.0027  Score=57.33  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..+.|.||.|||||||.+.|++.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4588999999999999999999774

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.45  E-value=0.004  Score=52.49  Aligned_cols=22  Identities=45%  Similarity=0.717  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|+.|||||||++.|.|-.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6799999999999999998853

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.42  E-value=0.004  Score=54.03  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|--+.|+||.||||||+-+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4677788999999999999999993

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.41  E-value=0.0035  Score=53.71  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+|++||||||+-+.|+-.+
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5589999999999999997544

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0039  Score=54.12  Aligned_cols=23  Identities=35%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.|+||.||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            67899999999999999998543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0023  Score=58.36  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -.++.++||+|+||||++-=|+-.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999887666443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.35  E-value=0.0037  Score=53.27  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999998655

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.34  E-value=0.0038  Score=54.24  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++||.|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999863

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.004  Score=53.97  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.++|..||||||+.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.33  E-value=0.0032  Score=54.69  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999997443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.29  E-value=0.12  Score=47.69  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHc
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ..+++|.|.-|.|||||.+.+.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998853

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0047  Score=54.63  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +|.+++|-|+-||||||+++.|.-.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999998654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0046  Score=55.45  Aligned_cols=28  Identities=32%  Similarity=0.431  Sum_probs=24.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|-+++|-|+-||||||+.+.|.--+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999877553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.24  E-value=0.0042  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+|..|||||||++.|.|-.
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999999854

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.15  E-value=0.004  Score=60.00  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGLKNISQGEIWV  150 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i  150 (457)
                      |.-+.+.|+-||||||||+.|.+.++++.=-|.+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            3447899999999999999999999886544555

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.14  E-value=0.0016  Score=54.56  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|..|+|||||++.|+|..
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999853

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.11  E-value=0.0039  Score=54.11  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.-+++|-|+.||||||+++.|...+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            44589999999999999999998765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.09  E-value=0.0036  Score=56.97  Aligned_cols=98  Identities=23%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG  194 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g  194 (457)
                      +...++.|+||+|+||||++-=|+-.+.                   ...++|+++.=|..-   .-..|.|..+     
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~-------------------~~g~kV~lit~Dt~R---~ga~eQL~~~-----   62 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK-------------------KKGFKVGLVGADVYR---PAALEQLQQL-----   62 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH-------------------HTTCCEEEEECCCSS---HHHHHHHHHH-----
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-------------------HCCCceEEEEeeccc---cchhHHHHHh-----
Confidence            3456799999999999998766663321                   112468888755321   1234444433     


Q ss_pred             CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHH
Q psy10858        195 MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPL  256 (457)
Q Consensus       195 ~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~  256 (457)
                                   .+.++++. .-....++..=.++  ++..+...+-+++|.|  |+|..+.
T Consensus        63 -------------a~~l~v~~~~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~~  108 (211)
T d1j8yf2          63 -------------GQQIGVPVYGEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHGY  108 (211)
T ss_dssp             -------------HHHHTCCEECCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCCT
T ss_pred             -------------ccccCcceeecccchhhhHHHHH--HHHHhhccCCceEEEe--cCCcCcc
Confidence                         34445432 12223333222222  5556667789999999  8887543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.0045  Score=54.34  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      -++|+|+.|+|||||++.|++-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.06  E-value=0.0051  Score=52.47  Aligned_cols=22  Identities=41%  Similarity=0.525  Sum_probs=19.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999996543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0058  Score=53.39  Aligned_cols=30  Identities=37%  Similarity=0.483  Sum_probs=24.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC---CCCCceEE
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL---KNISQGEI  148 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl---l~p~sG~I  148 (457)
                      |++|.||.||||||+-+.|+--   ...+.|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            7899999999999999999844   44456655

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0038  Score=55.57  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++.+++|-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998774

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.97  E-value=0.0051  Score=51.99  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999988653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.96  E-value=0.016  Score=54.25  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQG-EIWVLG  152 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG-~I~i~G  152 (457)
                      -++.|.++-+-||+|||||||.-.++....-..| -+|++.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            5789999999999999999999877765432233 344443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.94  E-value=0.006  Score=55.13  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ...++.|+||+|+||||++-=|+-.+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999987777543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.93  E-value=0.0063  Score=54.62  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=29.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--eEEEEcCcc
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQ--GEIWVLGGH  154 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~s--G~I~i~G~~  154 (457)
                      ++|-++.|.|.+||||||+.+.|.-.+....  -.+.++|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            6888999999999999999999875432111  245676644

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.91  E-value=0.006  Score=52.74  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|...||||||++.|+|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.89  E-value=0.0047  Score=56.18  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=60.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCCCCCCCCCHHHHHHHhhhhcC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQELAMFGELTIKETLNFFGMIYG  194 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~~L~~~lTV~EnL~~~~~l~g  194 (457)
                      ++-.++.++||+|+||||++-=|+-.+.                   ..+++|+++.=+..   ..-..|.|        
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-------------------~~~~kV~lit~Dt~---R~gA~eQL--------   58 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-------------------DEGKSVVLAAADTF---RAAAIEQL--------   58 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH-------------------HTTCCEEEEEECTT---CHHHHHHH--------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-------------------HCCCceEEEeeccc---ccchhHHH--------
Confidence            4566899999999999998766664321                   11245777765431   11123333        


Q ss_pred             CCHHHHHHHHHHHHhHcCCCC-CCCCCCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHH
Q psy10858        195 MDESIWLFQMRKYSHVLKLPN-LERPVKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDL  264 (457)
Q Consensus       195 ~~~~~~~~~~~~ll~~l~L~~-~~~~~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~  264 (457)
                                +.+.+.++++. ......++.  .-.+...+.+...+-+++|.|  |+|..+.....+-++
T Consensus        59 ----------~~~a~~l~i~~~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~~~el  115 (213)
T d1vmaa2          59 ----------KIWGERVGATVISHSEGADPA--AVAFDAVAHALARNKDVVIID--TAGRLHTKKNLMEEL  115 (213)
T ss_dssp             ----------HHHHHHHTCEEECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHHHHH
T ss_pred             ----------HHHhhhcCccccccCCCCcHH--HHHHHHHHHHHHcCCCEEEEe--ccccccchHHHHHHH
Confidence                      33344455532 111112222  222334456667788999999  777777666665555

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.82  E-value=0.0061  Score=56.35  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=20.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|..|+|||||++.|.|..
T Consensus        35 I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999999964

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.0073  Score=54.12  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKNISQGEI  148 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~I  148 (457)
                      +|.+++|-|+-||||||+.++|.-.+.. .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence            7999999999999999999999877654 4544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.0079  Score=52.82  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=24.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -+++|+++-|.|+.|+||||+.--++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            389999999999999999999987653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.77  E-value=0.0072  Score=52.02  Aligned_cols=23  Identities=39%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.0068  Score=51.47  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            679999999999999998764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.66  E-value=0.0073  Score=53.86  Aligned_cols=44  Identities=16%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      ++.++++||- -.+-...+..++..+... .....+|++|+..+..
T Consensus       109 ~~~iilide~-d~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~i  152 (231)
T d1iqpa2         109 SFKIIFLDEA-DALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKI  152 (231)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGS
T ss_pred             CceEEeehhh-hhcchhHHHHHhhhcccC-CcceEEEeccCChhhc
Confidence            6779999994 455556666666666553 3356778888887765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.0081  Score=51.45  Aligned_cols=22  Identities=41%  Similarity=0.456  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999743

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.0089  Score=53.64  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .+.|.||+|+||||+.++|+..+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999997653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.61  E-value=0.0081  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|-||.||||||.-+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999998654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.60  E-value=0.0079  Score=53.27  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++||.|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.015  Score=49.18  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|..|+|||||++.+++
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67999999999999998776

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.51  E-value=0.0085  Score=51.39  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+||.||||||+-+.|+--+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999997443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.49  E-value=0.0079  Score=51.11  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.01  Score=50.14  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|..|+|||||++.+++-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.0066  Score=58.17  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++||-|++||||||+.+.|.-++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            789999999999999999987763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.008  Score=51.37  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987663

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.46  E-value=0.0078  Score=51.03  Aligned_cols=21  Identities=52%  Similarity=0.735  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999774

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.45  E-value=0.0099  Score=52.93  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHc
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.++.|.||.|+|||||++.++-
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            45788999999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.0058  Score=58.96  Aligned_cols=27  Identities=30%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        116 RREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +.-++||.||.|||||||+..|+..+.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999986543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.011  Score=50.96  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|+||.||||||+.+.|+--+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999998643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.01  Score=52.56  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.|-||+|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6799999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.011  Score=52.43  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++||.|..||||||..+++.-+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999998643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.18  E-value=0.014  Score=50.96  Aligned_cols=26  Identities=15%  Similarity=0.257  Sum_probs=23.4

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +++|+++.|.|++|+||||+.--++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999876653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.04  E-value=0.012  Score=51.51  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.|+||.||||||+-+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999998644

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.013  Score=50.36  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            779999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.015  Score=48.96  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|.+|+|||||++.+++-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.97  E-value=0.016  Score=51.34  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHH
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAI  137 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L  137 (457)
                      +++|+++.|.||.||||||+.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            899999999999999999997644

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.012  Score=49.95  Aligned_cols=20  Identities=25%  Similarity=0.541  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|..|+|||||++-+++
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999997765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.96  E-value=0.011  Score=52.79  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCCCCc
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKNISQ  145 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~p~s  145 (457)
                      +-|.||.|+||||+.++|+..+....
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~~   63 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTNI   63 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCCc
Confidence            67999999999999999987665443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.012  Score=49.70  Aligned_cols=20  Identities=35%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|+.|+|||||++.+.+
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.96  E-value=0.016  Score=48.81  Aligned_cols=20  Identities=20%  Similarity=0.567  Sum_probs=17.9

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.012  Score=50.00  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.++|+.|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999987654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.015  Score=51.34  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=24.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      -+++|.++.|.|++||||||+.-.++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999999999887763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.015  Score=49.37  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++|+|..|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6799999999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.84  E-value=0.013  Score=52.67  Aligned_cols=22  Identities=45%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +++|+|...||||||++.|++.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.84  E-value=0.0088  Score=51.27  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|+.|+|||||++.+.+-
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            669999999999999988653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.77  E-value=0.014  Score=55.36  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .-+.|+||.|+|||+|.|.|+..+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            446799999999999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.76  E-value=0.014  Score=50.16  Aligned_cols=20  Identities=40%  Similarity=0.722  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|..|+|||||++.+++
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998775

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.014  Score=49.05  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=18.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|..|+|||||++.+.+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.72  E-value=0.016  Score=50.35  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998655

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.014  Score=49.53  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|+|..|+|||||++.+++-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.018  Score=48.91  Aligned_cols=20  Identities=35%  Similarity=0.664  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67999999999999987765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.64  E-value=0.014  Score=52.09  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +-|.||.|+||||+.+++++.+
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4699999999999999998754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.018  Score=56.58  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=21.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++|+|..|+|||||++.|.|.-.
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            79999999999999999999754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.55  E-value=0.019  Score=49.72  Aligned_cols=30  Identities=27%  Similarity=0.280  Sum_probs=25.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..++|.++.|-|+=||||||+.|.++.-+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            347899999999999999999998876553

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.016  Score=48.49  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|+|..|+|||||++.+.+-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.021  Score=48.06  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|..|+|||||++-+++-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.016  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|+|.+|+|||||++.+++-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999987754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.48  E-value=0.017  Score=48.80  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.017  Score=48.71  Aligned_cols=20  Identities=40%  Similarity=0.569  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.016  Score=50.34  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++.+++-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999987753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.023  Score=48.31  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      +.|+|..|+|||||++.+.+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCcC
Confidence            67999999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.33  E-value=0.0095  Score=56.55  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++||-|++||||||+.+.|.-.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999999877553

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.018  Score=49.08  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=19.0

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|..|+|||||++.+++-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.023  Score=47.78  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|..|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999887754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.12  E-value=0.015  Score=49.42  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +.++|++|+|||||++.+.+-.
T Consensus        15 IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6699999999999999987644

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.11  E-value=0.021  Score=50.62  Aligned_cols=44  Identities=11%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      +.+++|+||.- ++...++..+...++.. .....++++|++.+-+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGGS
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhcccc-ccceeeeeccCchhhh
Confidence            36799999964 56667777776666553 3456778888888765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.016  Score=49.21  Aligned_cols=29  Identities=31%  Similarity=0.588  Sum_probs=24.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKNISQGEI  148 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~p~sG~I  148 (457)
                      +.|||..|+|||||++-+.....|+.|-.
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            68999999999999999887767777744

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.07  E-value=0.02  Score=51.21  Aligned_cols=27  Identities=33%  Similarity=0.623  Sum_probs=22.0

Q ss_pred             EEEEcCCCccHHHHHHHH-HcCCCCCce
Q psy10858        120 FVLLGASSAGKTTLLKAI-VGLKNISQG  146 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L-~Gll~p~sG  146 (457)
                      +.|||.+|+|||||++-+ .|-..||-|
T Consensus         9 illlG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            679999999999999976 455567766

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.018  Score=54.66  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=28.3

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        110 CSLVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .=+.|.+|+-.+|+|+.|+|||||+.+|+--.
T Consensus        36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999999998644

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.01  E-value=0.022  Score=50.52  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..+.|.||.|+||||+++.|+-.++
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh
Confidence            4678999999999999999998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.01  E-value=0.021  Score=48.15  Aligned_cols=21  Identities=33%  Similarity=0.616  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|..|+|||||++-+.+-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999977654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.021  Score=48.37  Aligned_cols=20  Identities=30%  Similarity=0.738  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.023  Score=48.35  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|+|..|+|||||++-+.+-
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.86  E-value=0.02  Score=51.07  Aligned_cols=45  Identities=13%  Similarity=0.275  Sum_probs=33.2

Q ss_pred             cCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        239 HKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       239 ~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .+.+++|+||.= .|.......+++.++.. .....+|++|++.+-+
T Consensus       130 ~~~~iiiide~d-~l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         130 HRYKCVIINEAN-SLTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPI  174 (252)
T ss_dssp             -CCEEEEEECTT-SSCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSS
T ss_pred             CCceEEEecccc-ccccccchhhhcccccc-cccccceeeeccccch
Confidence            356799999985 48888888888777654 3356689999988654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.80  E-value=0.026  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHcC
Q psy10858        117 REFFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      .-++||.||.|||||||+..|...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            456999999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.024  Score=48.55  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|..|+|||||++.+++-
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999887753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.62  E-value=0.026  Score=48.28  Aligned_cols=27  Identities=37%  Similarity=0.664  Sum_probs=22.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcC--CCCCce
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL--KNISQG  146 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl--l~p~sG  146 (457)
                      +.|||..|+|||||++.+.-.  ..||-|
T Consensus         5 ivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            679999999999999988433  357888

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.56  E-value=0.027  Score=47.75  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.++|..|+|||||++.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999998775

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.017  Score=49.05  Aligned_cols=20  Identities=40%  Similarity=0.644  Sum_probs=17.4

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++++|+.|+|||||++.+++
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997755

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.027  Score=47.60  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|+.|+|||||++-+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999988753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.034  Score=46.88  Aligned_cols=21  Identities=43%  Similarity=0.607  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|..|+|||||++.+.+-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999988753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.46  E-value=0.019  Score=51.29  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++.|.||.|+||||+++.++-.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.43  E-value=0.031  Score=52.78  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999877544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.39  E-value=0.03  Score=49.38  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      +.+++|+||- -.+.+..+..++..++... ...-++++|++...+
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~i  142 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKL  142 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcc-cceeeccccCcHHHh
Confidence            3479999996 5788888888888887643 355677788776654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.32  E-value=0.074  Score=46.69  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=26.4

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      ..++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            3466666666 78889999999999999987765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.031  Score=47.18  Aligned_cols=20  Identities=40%  Similarity=0.557  Sum_probs=17.7

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++++|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999996644

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.23  E-value=0.029  Score=51.35  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|.||.|||||++.+.|+..
T Consensus        43 vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhc
Confidence            679999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.032  Score=46.90  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      +.|+|..|+|||||++-+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.035  Score=47.76  Aligned_cols=20  Identities=35%  Similarity=0.557  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      ++|+|..|+|||||++.++.
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.034  Score=47.84  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++++|..|+|||||++.+.+-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999977664

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.06  E-value=0.022  Score=48.39  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=8.4

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.03  E-value=0.035  Score=52.08  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             CCCCChhHHHHHHHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q psy10858        220 VKYLSGGQKRRLSFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE  284 (457)
Q Consensus       220 ~~~LSGGqkQRlsLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e  284 (457)
                      ..+++.-+.+++.-..-+...|-++.+=.    .|......+-++.+...+++..|+.++..++.
T Consensus       195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~  255 (319)
T d1wxqa1         195 PTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAEL  255 (319)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             hhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHHHH
Confidence            34566777777777666667777666432    12222333334444445667777777766654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.96  E-value=0.035  Score=46.97  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.|+|..|+|||||++.+++
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.90  E-value=0.031  Score=54.89  Aligned_cols=52  Identities=12%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             HHHHHhhcCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHhccCe
Q psy10858        232 SFTIAILHKPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEANDASE  290 (457)
Q Consensus       232 sLA~ALl~~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea~~~dr  290 (457)
                      ++..+|=++|++|+..|-.   |+.+.....+.    ...|.-|+-|-|--+-+...+|
T Consensus       219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~~a~~~~~R  270 (401)
T d1p9ra_         219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTNTAVGAVTR  270 (401)
T ss_dssp             HHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCSSSHHHHHH
T ss_pred             HHHHHHhhcCCEEEecCcC---ChHHHHHHHHH----HhcCCeEEEEeccCchHhhhhh
Confidence            5667788999999999987   56655544433    4579999999997554433333

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.039  Score=47.31  Aligned_cols=20  Identities=40%  Similarity=0.647  Sum_probs=17.1

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.|+|..|+|||||++-+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999985544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.80  E-value=0.047  Score=47.45  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +|++|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7899999999999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.039  Score=47.60  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHcC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++|+|..|+|||||++.+.+-
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999876643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.55  E-value=0.022  Score=53.79  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNI  143 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p  143 (457)
                      -+-|.|+.|+|||||.|.+++++++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            3679999999999999999999976

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.42  E-value=0.04  Score=51.52  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -+||+|-..|||||||+.|++--
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            38999999999999999999863

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.39  E-value=0.05  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHc
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .++||.|+-||||||..++|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.22  E-value=0.033  Score=52.10  Aligned_cols=42  Identities=24%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCceE-EEEcCcc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKNISQGE-IWVLGGH  154 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~p~sG~-I~i~G~~  154 (457)
                      -++.|.++-|.||+|+||||++-.++....-..|. ||++.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            57999999999999999999965555443333454 6666654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.057  Score=47.85  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .+++|=|+-||||||+++.|.--+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4788999999999999999987654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.97  E-value=0.049  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        114 VKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       114 I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .++|  +-|.||.|+|||++.+.++...
T Consensus        37 ~~~g--iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          37 PPRG--ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCce--eEEecCCCCCchHHHHHHHHHh
Confidence            3455  7799999999999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.43  E-value=0.092  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -+||||-.-+|||||++.|++--
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.061  Score=50.26  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        118 EFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       118 ei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      -+++++||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.26  E-value=0.068  Score=45.26  Aligned_cols=27  Identities=30%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC---CCCce
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK---NISQG  146 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll---~p~sG  146 (457)
                      +.|||..|+|||||++-+..-.   .||-|
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            6799999999999999886442   35555

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.11  E-value=0.071  Score=49.45  Aligned_cols=22  Identities=41%  Similarity=0.773  Sum_probs=20.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|.-.||||||++.|+|.-
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=0.077  Score=50.18  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.++||+|+|||.|.+.|+-.+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            57899999999999999999875

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.84  E-value=0.074  Score=49.88  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        110 CSLVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       110 vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      .=+.+-+|+-.+|+|+.|+|||||+..|+-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            447899999999999999999999887754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.70  E-value=0.059  Score=53.68  Aligned_cols=44  Identities=27%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCccCCCCchhhhcCcEEEEcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGGHPASIYHKTAGSKVGYMPQEL  174 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~~~~~~~~~~~r~~IGyvpQ~~  174 (457)
                      +.++||.|+|||-|.|.|++++..  =-+.++....         ..+||+-.+-
T Consensus        52 ILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~f---------TeaGYvG~DV   95 (443)
T d1g41a_          52 ILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF---------TEVGYVGKEV   95 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGG---------C----CCCCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC--CEEEeeccee---------eecceeecch
Confidence            679999999999999999998732  1344443222         2378877654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.11  Score=48.17  Aligned_cols=42  Identities=19%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCceEEEEcCcc
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLK-NISQGEIWVLGGH  154 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll-~p~sG~I~i~G~~  154 (457)
                      -+++|.++-|.||+|+|||||+-.++... .+..--++++.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            57899999999999999999976555443 3433345665543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.49  E-value=0.17  Score=44.27  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=24.8

Q ss_pred             eeEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q psy10858        105 VVLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       105 ~aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +.++..-+. -.|.=+.|.|++|+|||||.-.+..
T Consensus         3 ~~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           3 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            445544444 4577789999999999998876653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.45  E-value=0.08  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=20.7

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      ++++|.-.||||||++.|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7799999999999999999975

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.98  E-value=0.11  Score=45.31  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      -+|++|.=.+|||||+..|+|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            389999999999999999998654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.90  E-value=0.093  Score=48.77  Aligned_cols=19  Identities=42%  Similarity=0.704  Sum_probs=17.7

Q ss_pred             EEEEcCCCccHHHHHHHHH
Q psy10858        120 FVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~  138 (457)
                      ++|+|+.|+|||||+..|.
T Consensus         5 v~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHH
Confidence            7899999999999999883

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.86  E-value=0.092  Score=46.42  Aligned_cols=20  Identities=35%  Similarity=0.353  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHHc
Q psy10858        120 FVLLGASSAGKTTLLKAIVG  139 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~G  139 (457)
                      +|++|.-+||||||+..|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999964

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=88.58  E-value=0.094  Score=50.78  Aligned_cols=30  Identities=27%  Similarity=0.536  Sum_probs=27.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        113 VVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       113 ~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      .++++.++.|.||.|+||||+.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            447888999999999999999999999874

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.09  Score=47.11  Aligned_cols=22  Identities=45%  Similarity=0.539  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHcC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGL  140 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gl  140 (457)
                      ++.|-|.=|||||||++-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988663

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.13  E-value=0.21  Score=43.25  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=23.5

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      .++.. +-.-.|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~~-~v~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           5 SLHGV-LVDVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEESE-EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEE-EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence            44443 334567789999999999999885554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.56  E-value=0.13  Score=48.05  Aligned_cols=28  Identities=32%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHH---HcCCCCCceEE
Q psy10858        120 FVLLGASSAGKTTLLKAI---VGLKNISQGEI  148 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L---~Gll~p~sG~I  148 (457)
                      ++|+|+.|||||||...|   +|.... .|++
T Consensus         9 i~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v   39 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERILYYTGRIHK-IGEV   39 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence            799999999999999988   565543 3544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.13  Score=49.50  Aligned_cols=41  Identities=17%  Similarity=0.050  Sum_probs=25.6

Q ss_pred             ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        242 QLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       242 ~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      -++++||--+-...   ..+-+++...++.|..++++|.++..+
T Consensus       278 v~l~lDE~~~~~~~---~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql  318 (433)
T d1e9ra_         278 LWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQL  318 (433)
T ss_dssp             EEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred             eEEEechHhhhccc---HHHHHHHHHhCCCCceEEEEeccHHHH
Confidence            36777885432221   124455666677788888888887654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.52  E-value=0.15  Score=47.59  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ++| .=+.|-+|+..+|+|+.|+|||||+..+.--..
T Consensus        57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~   92 (276)
T d1fx0a3          57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ   92 (276)
T ss_dssp             TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             EEe-ccccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence            443 447899999999999999999999986544433

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=0.21  Score=43.93  Aligned_cols=44  Identities=7%  Similarity=0.038  Sum_probs=32.6

Q ss_pred             CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        240 KPQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       240 ~P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      +.+++|+||. -.|.+.++..+.+.++.. ..+..+|++|++.+-+
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep-~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEP-PAETWFFLATREPERL  151 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSC-CTTEEEEEEESCGGGS
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhh-cccceeeeeecChhhh
Confidence            4789999986 456677888888777654 2356678899998754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.2  Score=44.64  Aligned_cols=43  Identities=9%  Similarity=0.036  Sum_probs=33.5

Q ss_pred             CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q psy10858        241 PQLIILDEPCVGVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEEA  285 (457)
Q Consensus       241 P~lLILDEPTsGLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~ea  285 (457)
                      .+++|+||.= .|...++..+++.++.. ..+..+|++|++.+-+
T Consensus       116 ~kviiIde~d-~l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVH-MLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGG-GSCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred             CEEEEEECcc-cCCHHHHHHHHHHHhcC-CCCeEEEEEcCCcccc
Confidence            4699999984 58888888887777653 3467889999998765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.53  E-value=0.24  Score=43.97  Aligned_cols=67  Identities=9%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             hcCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcCChhH-Hhc--cCeEEEEeCCeEEEecC
Q psy10858        238 LHKPQLIILDEPCV-GVDPLVRKRMWDLLQVFVGKGRTVIMTTQYIEE-AND--ASEVAFLYKGRIIAQDS  304 (457)
Q Consensus       238 l~~P~lLILDEPTs-GLDp~~r~~i~~~i~~~~~~g~TIIisTH~~~e-a~~--~dri~im~~GkI~~~gs  304 (457)
                      +.+.++|++|+-=. .-++..+..++.++....+.|+.||++|..... ...  .|=..-+..|-++...+
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p  165 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL  165 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECC
Confidence            55899999998733 335788888999988888889988888875432 221  11122235666665543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=84.04  E-value=0.35  Score=46.16  Aligned_cols=30  Identities=17%  Similarity=0.130  Sum_probs=23.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEI  148 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I  148 (457)
                      .+.|=|+=|+||||+++.|..-+....+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~   37 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTL   37 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeE
Confidence            366889999999999999999876543333

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=84.02  E-value=0.24  Score=47.73  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        115 KRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +++. +-++||.|+|||-|.|.|+-+.
T Consensus        67 p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            4444 5589999999999999999875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.91  E-value=0.25  Score=43.82  Aligned_cols=19  Identities=26%  Similarity=0.644  Sum_probs=17.6

Q ss_pred             EEEEcCCCccHHHHHHHHH
Q psy10858        120 FVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~  138 (457)
                      +|++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999999884

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=83.66  E-value=0.25  Score=43.33  Aligned_cols=22  Identities=36%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +|++|.-++|||||++.|++..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7899999999999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.33  E-value=0.26  Score=46.46  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCC
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      .+.++||+|+|||.+.+.|+-.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            57799999999999999999876

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=83.01  E-value=0.25  Score=47.11  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=26.4

Q ss_pred             eEeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q psy10858        106 VLNNCSLVVKRREFFVLLGASSAGKTTLLKAIVGLK  141 (457)
Q Consensus       106 aL~~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~Gll  141 (457)
                      +..-+-...++| ++.+.||.|+|||.|.+.|++.+
T Consensus       113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            344444667777 44457999999999999999864

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=81.95  E-value=0.27  Score=46.66  Aligned_cols=20  Identities=40%  Similarity=0.602  Sum_probs=17.8

Q ss_pred             eCCcEEEEEcCCCccHHHHH
Q psy10858        115 KRREFFVLLGASSAGKTTLL  134 (457)
Q Consensus       115 ~~Gei~gLlGpNGaGKTTLL  134 (457)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999965

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=81.86  E-value=0.33  Score=46.27  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCc
Q psy10858        119 FFVLLGASSAGKTTLLKAIVGLKNISQGEIWVLGG  153 (457)
Q Consensus       119 i~gLlGpNGaGKTTLLk~L~Gll~p~sG~I~i~G~  153 (457)
                      .+.|=|+=||||||+++.|.-.+......+.+..+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence            37788999999999999999887654444544343

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.83  E-value=0.28  Score=46.67  Aligned_cols=19  Identities=42%  Similarity=0.573  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCccHHHHH
Q psy10858        116 RREFFVLLGASSAGKTTLL  134 (457)
Q Consensus       116 ~Gei~gLlGpNGaGKTTLL  134 (457)
                      .|++..+.|.||.|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999964

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.64  E-value=0.28  Score=44.81  Aligned_cols=17  Identities=24%  Similarity=0.577  Sum_probs=14.0

Q ss_pred             CcEEEEEcCCCccHHHHH
Q psy10858        117 REFFVLLGASSAGKTTLL  134 (457)
Q Consensus       117 Gei~gLlGpNGaGKTTLL  134 (457)
                      |- +.|.|+-||||||++
T Consensus        25 g~-~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GP-LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SC-EEEEECTTSCHHHHH
T ss_pred             CC-EEEEecCCccHHHHH
Confidence            44 568899999999876

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=81.54  E-value=0.24  Score=44.66  Aligned_cols=15  Identities=27%  Similarity=0.603  Sum_probs=13.0

Q ss_pred             EEEEcCCCccHHHHH
Q psy10858        120 FVLLGASSAGKTTLL  134 (457)
Q Consensus       120 ~gLlGpNGaGKTTLL  134 (457)
                      +.|+|+-|+||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            568899999999865

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.10  E-value=0.22  Score=46.70  Aligned_cols=30  Identities=17%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q psy10858        109 NCSLVVKRREFFVLLGASSAGKTTLLKAIV  138 (457)
Q Consensus       109 ~vs~~I~~Gei~gLlGpNGaGKTTLLk~L~  138 (457)
                      |.=+.+-+|+..+|+|+.|+|||||+..+.
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            344799999999999999999999976443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=80.13  E-value=0.43  Score=44.14  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=19.8

Q ss_pred             EEEEcCCCccHHHHHHHHHcCCC
Q psy10858        120 FVLLGASSAGKTTLLKAIVGLKN  142 (457)
Q Consensus       120 ~gLlGpNGaGKTTLLk~L~Gll~  142 (457)
                      ..|+|+.|+|||+++.-++-.+.
T Consensus        42 ~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEECCCCCcHHHHHHHHHHHHH
Confidence            46999999999999998887653