Psyllid ID: psy10872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MGLDDKISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESEAPLGSASVW
Secondary Structure (PSIPRED)
cccHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccEEccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHccccEEEccccccccccccccccccEcccHHHHHHHHcccEEccccccccccHHHcccccEEccHHHHHHHHHHHHHHcccccEcccccccccccccccccHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mglddkisssatdgseERQCRLRKFLHVfakcplesnvivehkdcsaEPLAALIAKLNGCVSqleqlpvkvhdlpagtgsttALKFFNTHQlkchlqrhpsctslkqwkggtvkidplarmcnthqlkchlqrhpsctslkqwkggtvkidpLALVQAIERYLVVRGYarirdkdsgesdednseedidDTLAAVVITHGARHKLQFligdhplpynmTVYQAIRQFscvghgenggqghggceteseseaplgsasvw
Flexible Loop (DISEMBL)
mglddkisssatdgseeRQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQrhpsctslkqwKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRgyarirdkdsgesdednseediDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHggceteseseaplgsasvw
Low Complexity Region (SEG)
MGLDDKISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRdkdsgesdednseediddTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVghgenggqghggCETESESEAPLGSASVW
Disordered region (IsUnstruct)
*******************CRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARI******************DTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGH***************************
Disordered Region (DISOPRED)
*GLDDKISS*********QCRLRKFLHVFAKC****************PLAALIAKLNGCVSQLEQLPVKVHDLPA*****TALKFFNTHQLKCHLQRHPSCT***Q***GTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVR**************************************LQFLIGDHPLPYNMTVYQAIRQFS***********************PLG*A*VW
Disordered Region (DISEMBL)
******************QCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRD*************DIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHG**************************
Disordered Region (DISPRO)
**********ATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARI**************EDIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSC******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLDDKISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESEAPLGSASVW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
E1B7Q7	1992	E3 ubiquitin-protein liga	yes	N/A	0.806	0.104	0.454	2e-52
Q14669	1992	E3 ubiquitin-protein liga	yes	N/A	0.806	0.104	0.454	1e-51
G5E870	2025	E3 ubiquitin-protein liga	yes	N/A	0.764	0.097	0.470	3e-51
B4F6W9	2056	E3 ubiquitin-protein liga	yes	N/A	0.764	0.096	0.479	4e-51
F1RCR6	2026	E3 ubiquitin-protein liga	yes	N/A	0.810	0.103	0.437	1e-50
F1LP64	2025	E3 ubiquitin-protein liga	yes	N/A	0.806	0.103	0.458	2e-49
Q9ULT8	2610	E3 ubiquitin-protein liga	no	N/A	0.316	0.031	0.348	9e-06
Q69ZR2	2618	E3 ubiquitin-protein liga	no	N/A	0.359	0.035	0.336	2e-05

>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 153/264 (57%), Gaps = 55/264 (20%)

Query: 7    ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEH-KDCSAEPLAALIAKLNGCVSQLE 65
            ++S +   +  R+ RL++FLHVF   PL     +E  +     PL AL+ K+N C+SQ+E
Sbjct: 1171 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIERVEPVGNAPLLALVHKMNNCLSQME 1230

Query: 66   QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
            Q PVKVHD P+G G+         + ALKFFNT                           
Sbjct: 1231 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNT--------------------------- 1263

Query: 117  PLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDS 176
                    HQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D 
Sbjct: 1264 --------HQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDD 1314

Query: 177  GESDEDNSEEDIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGEN 235
             +SD+D S+E+ID++LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS     E 
Sbjct: 1315 EDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDER 1374

Query: 236  GGQGHGGCETESESEAPLGSASVW 259
                    E+  +   PLG A +W
Sbjct: 1375 --------ESTDDESNPLGRAGIW 1390

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 152/264 (57%), Gaps = 55/264 (20%)

Query: 7    ISSSATDGSEERQCRLRKFLHVFAKCPLE-SNVIVEHKDCSAEPLAALIAKLNGCVSQLE 65
            ++S +   +  R+ RL++FLHVF   PL     I   +     PL AL+ K+N C+SQ+E
Sbjct: 1171 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQME 1230

Query: 66   QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
            Q PVKVHD P+G G+         + ALKFFNT                           
Sbjct: 1231 QFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNT--------------------------- 1263

Query: 117  PLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDS 176
                    HQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R+ D 
Sbjct: 1264 --------HQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDE 1315

Query: 177  GESDEDNSEEDIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGEN 235
             +SD+D S+E+ID++LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS     E 
Sbjct: 1316 -DSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDER 1374

Query: 236  GGQGHGGCETESESEAPLGSASVW 259
                    E+  +   PLG A +W
Sbjct: 1375 --------ESTDDESNPLGRAGIW 1390

Component of PA700, an ATP-dependent multisubunit protein that activates the proteolytic activities of the multifunctional proteinase (20S proteasome) of the 26S complex. Specifically interacts with the ligand binding domain of the thyroid hormone receptor (in a thyroid hormone T3-independent manner) and with retinoid X receptor (RXR). Could be E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/253 (47%), Positives = 147/253 (58%), Gaps = 55/253 (21%)

Query: 18   RQCRLRKFLHVFAKCPLESNVIVEH-KDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPA 76
            R+ RL++FLHVF   PL     V   +     PL AL+ K+N C+SQ+EQ PVKVHD P+
Sbjct: 1215 REIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQMEQFPVKVHDFPS 1274

Query: 77   GTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQL 127
            G G+         + ALKFFNT                                   HQL
Sbjct: 1275 GNGAGGSFSLNRGSQALKFFNT-----------------------------------HQL 1299

Query: 128  KCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEED 187
            KC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D  +SD+D S+E+
Sbjct: 1300 KCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDDEDSDDDGSDEE 1358

Query: 188  IDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETE 246
            ID++LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS     E         E+ 
Sbjct: 1359 IDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDER--------EST 1410

Query: 247  SESEAPLGSASVW 259
             +   PLG A +W
Sbjct: 1411 DDESNPLGRAGIW 1423

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/248 (47%), Positives = 147/248 (59%), Gaps = 50/248 (20%)

Query: 18   RQCRLRKFLHVFAKCPLESNVIVEHKDCSAEP-LAALIAKLNGCVSQLEQLPVKVHDLPA 76
            R  RL++FLHVF   PL     +   D +    L AL+ K+N C+SQ+EQ PVKVHD P+
Sbjct: 1249 RDIRLKRFLHVFFGTPLPGEEPLAKLDPTENRHLLALVHKMNNCLSQMEQFPVKVHDFPS 1308

Query: 77   GTGS----TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQ 132
            G G+    + ALKFFNT                                   HQLKC LQ
Sbjct: 1309 GNGTGSRGSQALKFFNT-----------------------------------HQLKCQLQ 1333

Query: 133  RHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDTL 192
            RHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D  +SD+D S+E+ID++L
Sbjct: 1334 RHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDDEDSDDDGSDEEIDESL 1392

Query: 193  AAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESEA 251
            AA  +  G  RH+LQF IGDH LPYNMTVYQA+RQ+S     E         E+  +   
Sbjct: 1393 AAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSIQTEEER--------ESTDDESN 1444

Query: 252  PLGSASVW 259
            PLG A +W
Sbjct: 1445 PLGRAGIW 1452

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 146/258 (56%), Gaps = 48/258 (18%)

Query: 7    ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAE-PLAALIAKLNGCVSQLE 65
            ++S++   +  R  R+++FLHVF  CP+         D +   PL AL+ K+N C+SQ+E
Sbjct: 1210 LTSNSERDTISRDERIKRFLHVFFGCPIPGQEPPGRLDPTENGPLLALVHKMNNCLSQME 1269

Query: 66   QLPVKVHDLPAGTGS----TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARM 121
            Q PVKVHD P+G G+    + ALKFFNT                                
Sbjct: 1270 QFPVKVHDFPSGNGNGSRGSQALKFFNT-------------------------------- 1297

Query: 122  CNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDE 181
               HQLKC LQRHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY RIR++D    D+
Sbjct: 1298 ---HQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDD 1354

Query: 182  DNSEEDIDDTLAAVVITHGARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHG 241
             + +E  +   A  + +   RH+LQF IG+H LPYNMTVYQA+RQFS     E       
Sbjct: 1355 GSDDEIDESLAAQFLNSGSVRHRLQFYIGEHLLPYNMTVYQAVRQFSLQAEEER------ 1408

Query: 242  GCETESESEAPLGSASVW 259
              E+  +   PLG A +W
Sbjct: 1409 --ESTDDEANPLGRAGIW 1424

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/264 (45%), Positives = 152/264 (57%), Gaps = 55/264 (20%)

Query: 7    ISSSATDGSEERQCRLRKFLHVFAKCPLESNVIVEH-KDCSAEPLAALIAKLNGCVSQLE 65
            ++S +   +  R+ RL++FLHVF   PL     V   +     PL AL+ K+N C+SQ+E
Sbjct: 1204 LTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQME 1263

Query: 66   QLPVKVHDLPAGTGS---------TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKID 116
            Q PVKVHD P+G GS         + ALKFFNT                           
Sbjct: 1264 QFPVKVHDFPSGNGSGGSFSLNRGSQALKFFNT--------------------------- 1296

Query: 117  PLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDS 176
                    HQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R +D 
Sbjct: 1297 --------HQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVR-EDD 1347

Query: 177  GESDEDNSEEDIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGEN 235
             +SD+D S+E+ID++LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS     E 
Sbjct: 1348 EDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDER 1407

Query: 236  GGQGHGGCETESESEAPLGSASVW 259
                    E+  +   PLG A +W
Sbjct: 1408 --------ESTDDESNPLGRAGIW 1423

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 41   EHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHP 100
            E++D  + P  ALI KL   +  +E+LP+ ++D P   GST  L+   T +L+  L+R P
Sbjct: 952  ENEDDESRPAVALIRKLIAVLESIERLPLHLYDTP---GSTYNLQIL-TRRLRFRLERAP 1007

Query: 101  SCTSLKQWKGGTVKIDPLARMCNTHQ 126
              T+L    G  +K++PLA + +  Q
Sbjct: 1008 GETALIDRTGRMLKMEPLATVESLEQ 1033

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. May be required for development of the head mesenchyme and neural tube closure.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 26   LHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGSTTALK 85
            ++VF     ES    E  +  + P  ALI KL   +  +E+LP+ ++D P   GST  L+
Sbjct: 946  INVFKTAFSES----EDDESYSRPAVALIRKLIAVLESIERLPLHLYDTP---GSTYNLQ 998

Query: 86   FFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQ 126
               T +L+  L+R P  TSL    G  +K++PLA + +  Q
Sbjct: 999  IL-TRRLRFRLERAPGETSLIDRTGRMLKMEPLATVESLEQ 1038

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in development of the head mesenchyme and neural tube closure.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
170054840	2335	thyroid hormone receptor interactor 12 [	0.752	0.083	0.538	8e-63
347965679	3000	AGAP001296-PA [Anopheles gambiae str. PE	0.745	0.064	0.525	4e-61
270006541	2068	hypothetical protein TcasGA2_TC010408 [T	0.787	0.098	0.561	1e-60
189237322	2025	PREDICTED: similar to thyroid hormone re	0.787	0.100	0.561	1e-60
403182421	2138	AAEL017357-PA, partial [Aedes aegypti]	0.756	0.091	0.517	8e-59
242005584	2078	ubiquitin protein ligase E3a, putative [	0.749	0.093	0.540	1e-58
328696492	1962	PREDICTED: probable E3 ubiquitin-protein	0.791	0.104	0.539	3e-58
328696490	1986	PREDICTED: probable E3 ubiquitin-protein	0.791	0.103	0.539	5e-58
328696488	1990	PREDICTED: probable E3 ubiquitin-protein	0.791	0.103	0.539	5e-58
443732944	1640	hypothetical protein CAPTEDRAFT_164474 [	0.768	0.121	0.483	4e-57

>gi|170054840|ref|XP_001863312.1| thyroid hormone receptor interactor 12 [Culex quinquefasciatus] gi|167874999|gb|EDS38382.1| thyroid hormone receptor interactor 12 [Culex quinquefasciatus]

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 134/249 (53%), Positives = 162/249 (65%), Gaps = 54/249 (21%)

Query: 17   ERQCRLRKFLHVFAKCPLESNV--IVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDL 74
            ER  RLR FLHVFA  PL++N    V     +A P  A +AKLNGCV+QLEQ PVKVHD 
Sbjct: 1636 ERADRLRMFLHVFAGLPLDANYSSAVAPPSLNAAPFGAFVAKLNGCVTQLEQFPVKVHDF 1695

Query: 75   PAGTG---STTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHL 131
            PAG G   +T+ALKFFNT                                   HQLKC+L
Sbjct: 1696 PAGVGGRSNTSALKFFNT-----------------------------------HQLKCNL 1720

Query: 132  QRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEEDIDDT 191
            QRHP CT+L+QWKGGTVKIDPLALVQAIERYLVVRGY  IR  DS    E++SEEDID+ 
Sbjct: 1721 QRHPECTNLRQWKGGTVKIDPLALVQAIERYLVVRGYGGIR-VDS----EEDSEEDIDNI 1775

Query: 192  LAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESE 250
             AA +I+ G  +HKLQFLIG+H LPYNMTVYQAIRQ+S + + ++        ET++++E
Sbjct: 1776 DAAAMISMGGLKHKLQFLIGEHVLPYNMTVYQAIRQYSPLVNDQS--------ETDTDTE 1827

Query: 251  APLGSASVW 259
             P+GSAS+W
Sbjct: 1828 TPIGSASIW 1836

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965679|ref|XP_321851.5| AGAP001296-PA [Anopheles gambiae str. PEST] gi|333470399|gb|EAA01202.6| AGAP001296-PA [Anopheles gambiae str. PEST]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 133/253 (52%), Positives = 162/253 (64%), Gaps = 60/253 (23%)

Query: 17   ERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEP------LAALIAKLNGCVSQLEQLPVK 70
            ER  RLR FLHVFA  PL+++    H      P       +AL+AKLNGCV+QLEQ PVK
Sbjct: 2055 ERATRLRMFLHVFAGLPLDASY--SHVGAGTPPGMDGAAFSALVAKLNGCVTQLEQFPVK 2112

Query: 71   VHDLPAGTG---STTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQL 127
            VHD PAG G   +T+ALKFFNT                                   HQL
Sbjct: 2113 VHDFPAGVGGRSNTSALKFFNT-----------------------------------HQL 2137

Query: 128  KCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEED 187
            KC+LQRHP CT+L+QWKGGTVKIDPLALVQAIERYLVVRGY  IR  DS    E++SEED
Sbjct: 2138 KCNLQRHPECTNLRQWKGGTVKIDPLALVQAIERYLVVRGYGGIR-VDS----EEDSEED 2192

Query: 188  IDDTLAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETE 246
            ID+  AA +I+ G  +HKLQFLIG+H LPYNMTVYQAIRQ+S + + ++        ET+
Sbjct: 2193 IDNIDAAAMISMGGLKHKLQFLIGEHVLPYNMTVYQAIRQYSPLVNDQS--------ETD 2244

Query: 247  SESEAPLGSASVW 259
            +++E P+GSAS+W
Sbjct: 2245 TDTETPIGSASIW 2257

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006541|gb|EFA02989.1| hypothetical protein TcasGA2_TC010408 [Tribolium castaneum]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 171/253 (67%), Gaps = 49/253 (19%)

Query: 12   TDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKV 71
             +G  +R  RLR  L+VFA CPLE+NV  E    ++  ++AL+AKLNGCVSQLEQ PVKV
Sbjct: 1261 VEGPFDRDQRLRIMLNVFAGCPLEANV-TEITQLNSAWMSALVAKLNGCVSQLEQFPVKV 1319

Query: 72   HDLPA----GTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQL 127
            HDLPA    G G T+ALKFFNT                                   HQL
Sbjct: 1320 HDLPASSGAGRGGTSALKFFNT-----------------------------------HQL 1344

Query: 128  KCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEED 187
            KC+LQRHP CT+LKQWKGGTVKIDPLALVQAIERYLVVRGY R+RDKDS +SD+ +S++D
Sbjct: 1345 KCNLQRHPDCTNLKQWKGGTVKIDPLALVQAIERYLVVRGYGRLRDKDSADSDDGDSDDD 1404

Query: 188  IDDTLAAVVITH-GARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETE 246
            IDDTLA VVI+  GARHKLQFLIG++ LPYNMTVYQA+RQFS          G+   ET+
Sbjct: 1405 IDDTLAGVVISQSGARHKLQFLIGNNVLPYNMTVYQAVRQFS--------NNGNDQSETD 1456

Query: 247  SESEAPLGSASVW 259
            +++E PLG+  +W
Sbjct: 1457 TDNETPLGNVGIW 1469

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237322|ref|XP_966614.2| PREDICTED: similar to thyroid hormone receptor interactor 12 isoform 1 [Tribolium castaneum]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 171/253 (67%), Gaps = 49/253 (19%)

Query: 12   TDGSEERQCRLRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKV 71
             +G  +R  RLR  L+VFA CPLE+NV  E    ++  ++AL+AKLNGCVSQLEQ PVKV
Sbjct: 1218 VEGPFDRDQRLRIMLNVFAGCPLEANV-TEITQLNSAWMSALVAKLNGCVSQLEQFPVKV 1276

Query: 72   HDLPA----GTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQL 127
            HDLPA    G G T+ALKFFNT                                   HQL
Sbjct: 1277 HDLPASSGAGRGGTSALKFFNT-----------------------------------HQL 1301

Query: 128  KCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEED 187
            KC+LQRHP CT+LKQWKGGTVKIDPLALVQAIERYLVVRGY R+RDKDS +SD+ +S++D
Sbjct: 1302 KCNLQRHPDCTNLKQWKGGTVKIDPLALVQAIERYLVVRGYGRLRDKDSADSDDGDSDDD 1361

Query: 188  IDDTLAAVVITH-GARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETE 246
            IDDTLA VVI+  GARHKLQFLIG++ LPYNMTVYQA+RQFS          G+   ET+
Sbjct: 1362 IDDTLAGVVISQSGARHKLQFLIGNNVLPYNMTVYQAVRQFS--------NNGNDQSETD 1413

Query: 247  SESEAPLGSASVW 259
            +++E PLG+  +W
Sbjct: 1414 TDNETPLGNVGIW 1426

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182421|gb|EJY57371.1| AAEL017357-PA, partial [Aedes aegypti]

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 130/251 (51%), Positives = 161/251 (64%), Gaps = 55/251 (21%)

Query: 11   ATDGSE--ERQCRLRKFLHVFAKCPLESNVIVE-HKDCSAEPLAALIAKLNGCVSQLEQL 67
            A D ++  ER  RLR FLHVFA  PL++N         ++ P +A +AKLNGCV+QLEQ 
Sbjct: 1185 ANDANQLVERADRLRMFLHVFANLPLDANFSSNVSPAINSAPFSAFVAKLNGCVTQLEQF 1244

Query: 68   PVKVHDLPAGTG---STTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNT 124
            PVKVHD PAG G   +T+ALKFFNT                                   
Sbjct: 1245 PVKVHDFPAGVGGRSNTSALKFFNT----------------------------------- 1269

Query: 125  HQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNS 184
            HQLKC+LQRHP CT+L+QWKGGTVKIDPLALVQAIERYLVVRGY  IR  DS    E++S
Sbjct: 1270 HQLKCNLQRHPECTNLRQWKGGTVKIDPLALVQAIERYLVVRGYGGIR-VDS----EEDS 1324

Query: 185  EEDIDDTLAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGC 243
            EEDID+  AA +I+ G  +HKLQFLIG+H LPYNMTVYQAIRQ+S + + ++        
Sbjct: 1325 EEDIDNIDAAAMISMGGLKHKLQFLIGEHVLPYNMTVYQAIRQYSPLVNDQS-------- 1376

Query: 244  ETESESEAPLG 254
            ET++++E P+G
Sbjct: 1377 ETDTDTETPIG 1387

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005584|ref|XP_002423644.1| ubiquitin protein ligase E3a, putative [Pediculus humanus corporis] gi|212506804|gb|EEB10906.1| ubiquitin protein ligase E3a, putative [Pediculus humanus corporis]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 163/244 (66%), Gaps = 50/244 (20%)

Query: 22   LRKFLHVFAKCPLESNVIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGS- 80
            LR FLH+FA CPLE N  V+  + +   L+ L++KLN CVSQ+EQ PVKVHDLP G G  
Sbjct: 1300 LRGFLHIFAGCPLERNGSVDSINSNC--LSLLVSKLNSCVSQVEQFPVKVHDLPIGAGGA 1357

Query: 81   ---TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSC 137
               T+ALKFFNT                                   HQLKC+LQRHP C
Sbjct: 1358 RGGTSALKFFNT-----------------------------------HQLKCNLQRHPDC 1382

Query: 138  TSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSG-ESDEDNSEEDIDDTLAAVV 196
            T+LKQWKGG+VKIDPLALVQAIERYL+VRGY RIR +DSG   D+++ ++DIDDTLAAVV
Sbjct: 1383 TNLKQWKGGSVKIDPLALVQAIERYLIVRGYGRIRVQDSGESDDDNSEDDDIDDTLAAVV 1442

Query: 197  ITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESEAPLGS 255
            I+ G +RH+LQFLIGDH LPYNMTVYQA+RQF+ +   +         ET++++E PLG 
Sbjct: 1443 ISQGTSRHQLQFLIGDHVLPYNMTVYQAVRQFTNLNSTDQS-------ETDTDTEMPLGH 1495

Query: 256  ASVW 259
            +SVW
Sbjct: 1496 SSVW 1499

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696492|ref|XP_003240043.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 3 [Acyrthosiphon pisum]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 159/254 (62%), Gaps = 49/254 (19%)

Query: 9    SSATDGSEERQCRLRKFLHVFAKCPLES--NVIVEHKDCSAEPLAALIAKLNGCVSQLEQ 66
            +  T G + R  RLRKFLHVFA  P++S         +    P +ALI KL  CVSQLEQ
Sbjct: 1152 TEVTLGFDHRSDRLRKFLHVFAGYPIDSFEPFTKSQNNIETRPFSALIGKLGSCVSQLEQ 1211

Query: 67   LPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQ 126
             PVKVHDL  G G++ ALKFFNT                                   HQ
Sbjct: 1212 FPVKVHDLSTGAGNS-ALKFFNT-----------------------------------HQ 1235

Query: 127  LKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEE 186
            LKC LQRHP C +LKQWK GTVKIDPLALVQAIERYLVVRG++ IR+ +  +SD+DNS++
Sbjct: 1236 LKCLLQRHPDCNNLKQWKSGTVKIDPLALVQAIERYLVVRGFSHIRENNQSKSDDDNSDD 1295

Query: 187  DIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCET 245
            DIDDTLAAVVI  G ARHKLQFLIG+H LPYNMTVYQA+RQFS               ET
Sbjct: 1296 DIDDTLAAVVIGQGSARHKLQFLIGNHVLPYNMTVYQAVRQFSTTSD----------MET 1345

Query: 246  ESESEAPLGSASVW 259
            ++ESE PLGSA +W
Sbjct: 1346 DNESELPLGSAGIW 1359

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696490|ref|XP_003240042.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 2 [Acyrthosiphon pisum]

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 159/254 (62%), Gaps = 49/254 (19%)

Query: 9    SSATDGSEERQCRLRKFLHVFAKCPLES--NVIVEHKDCSAEPLAALIAKLNGCVSQLEQ 66
            +  T G + R  RLRKFLHVFA  P++S         +    P +ALI KL  CVSQLEQ
Sbjct: 1176 TEVTLGFDHRSDRLRKFLHVFAGYPIDSFEPFTKSQNNIETRPFSALIGKLGSCVSQLEQ 1235

Query: 67   LPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQ 126
             PVKVHDL  G G++ ALKFFNT                                   HQ
Sbjct: 1236 FPVKVHDLSTGAGNS-ALKFFNT-----------------------------------HQ 1259

Query: 127  LKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEE 186
            LKC LQRHP C +LKQWK GTVKIDPLALVQAIERYLVVRG++ IR+ +  +SD+DNS++
Sbjct: 1260 LKCLLQRHPDCNNLKQWKSGTVKIDPLALVQAIERYLVVRGFSHIRENNQSKSDDDNSDD 1319

Query: 187  DIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCET 245
            DIDDTLAAVVI  G ARHKLQFLIG+H LPYNMTVYQA+RQFS               ET
Sbjct: 1320 DIDDTLAAVVIGQGSARHKLQFLIGNHVLPYNMTVYQAVRQFSTT----------SDMET 1369

Query: 246  ESESEAPLGSASVW 259
            ++ESE PLGSA +W
Sbjct: 1370 DNESELPLGSAGIW 1383

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696488|ref|XP_001945197.2| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 1 [Acyrthosiphon pisum]

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 159/254 (62%), Gaps = 49/254 (19%)

Query: 9    SSATDGSEERQCRLRKFLHVFAKCPLES--NVIVEHKDCSAEPLAALIAKLNGCVSQLEQ 66
            +  T G + R  RLRKFLHVFA  P++S         +    P +ALI KL  CVSQLEQ
Sbjct: 1180 TEVTLGFDHRSDRLRKFLHVFAGYPIDSFEPFTKSQNNIETRPFSALIGKLGSCVSQLEQ 1239

Query: 67   LPVKVHDLPAGTGSTTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQ 126
             PVKVHDL  G G++ ALKFFNT                                   HQ
Sbjct: 1240 FPVKVHDLSTGAGNS-ALKFFNT-----------------------------------HQ 1263

Query: 127  LKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRDKDSGESDEDNSEE 186
            LKC LQRHP C +LKQWK GTVKIDPLALVQAIERYLVVRG++ IR+ +  +SD+DNS++
Sbjct: 1264 LKCLLQRHPDCNNLKQWKSGTVKIDPLALVQAIERYLVVRGFSHIRENNQSKSDDDNSDD 1323

Query: 187  DIDDTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCET 245
            DIDDTLAAVVI  G ARHKLQFLIG+H LPYNMTVYQA+RQFS               ET
Sbjct: 1324 DIDDTLAAVVIGQGSARHKLQFLIGNHVLPYNMTVYQAVRQFSTT----------SDMET 1373

Query: 246  ESESEAPLGSASVW 259
            ++ESE PLGSA +W
Sbjct: 1374 DNESELPLGSAGIW 1387

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443732944|gb|ELU17507.1| hypothetical protein CAPTEDRAFT_164474 [Capitella teleta]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/248 (48%), Positives = 151/248 (60%), Gaps = 49/248 (19%)

Query: 19   QCRLRKFLHVFAKCPLESNVIVEHKDCS-AEPLAALIAKLNGCVSQLEQLPVKVHDLPAG 77
            Q  LR FLHVF +CP     ++   D S A PL+ L++KL GC   LEQ  VKVHDLP  
Sbjct: 842  QVHLRSFLHVFLRCPPPDVAVINRVDVSQAPPLSHLVSKLLGCFHHLEQFQVKVHDLPGS 901

Query: 78   TGST----TALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQR 133
            + ++     AL+FFNT                                   HQLKC+LQR
Sbjct: 902  SNNSGRGSNALRFFNT-----------------------------------HQLKCNLQR 926

Query: 134  HPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIR-DKDSGESDEDNSEEDIDDTL 192
            HP CT+L+QWKGG VKIDPLALVQAIERYLV+RGY R++ + D   SD++ S+EDIDDT+
Sbjct: 927  HPGCTNLRQWKGGPVKIDPLALVQAIERYLVMRGYGRLKPEADEENSDDEQSDEDIDDTM 986

Query: 193  AAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVGHGENGGQGHGGCETESESEA 251
            AAV I+ G ARH+L+F+IG HPLPYNMTVYQA+RQFS       G       ET++++E 
Sbjct: 987  AAVSISQGHARHRLEFMIGSHPLPYNMTVYQAVRQFS-------GSVDRDSSETDTDTEH 1039

Query: 252  PLGSASVW 259
            P G   +W
Sbjct: 1040 PYGHTGIW 1047

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
UNIPROTKB|B4F6W9	2056	trip12 "E3 ubiquitin-protein l	0.494	0.062	0.557	6.5e-33
FB|FBgn0260794	3140	ctrip "circadian trip" [Drosop	0.490	0.040	0.567	8.3e-33
ZFIN|ZDB-GENE-041111-262	2095	trip12 "thyroid hormone recept	0.494	0.061	0.557	5.3e-31
UNIPROTKB|E1B7Q7	1992	TRIP12 "E3 ubiquitin-protein l	0.494	0.064	0.550	1.3e-30
UNIPROTKB|Q14669	1992	TRIP12 "E3 ubiquitin-protein l	0.494	0.064	0.550	1.3e-30
UNIPROTKB|E2R657	1993	TRIP12 "Uncharacterized protei	0.494	0.064	0.550	1.3e-30
UNIPROTKB|I3LK74	2002	TRIP12 "Uncharacterized protei	0.494	0.063	0.550	1.3e-30
UNIPROTKB|J9NRQ4	2011	TRIP12 "Uncharacterized protei	0.494	0.063	0.550	1.3e-30
RGD|1306607	2025	Trip12 "thyroid hormone recept	0.494	0.063	0.550	1.3e-30
MGI|MGI:1309481	2025	Trip12 "thyroid hormone recept	0.494	0.063	0.550	1.3e-30

UNIPROTKB|B4F6W9 trip12 "E3 ubiquitin-protein ligase TRIP12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 359 (131.4 bits), Expect = 6.5e-33, Sum P(3) = 6.5e-33
 Identities = 77/138 (55%), Positives = 87/138 (63%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1324 NTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1383

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IGDH LPYNMTVYQA+RQ+S             
Sbjct:  1384 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSIQTEEERES---- 1438

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1439 ---TDDESN-PLGRAGIW 1452

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

FB|FBgn0260794 ctrip "circadian trip" [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 8.3e-33, P = 8.3e-33
 Identities = 80/141 (56%), Positives = 95/141 (67%)

Query:   120 RMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXX 179
             R  NTHQLKC+LQRHP C +L+QWKGGTVKIDPLA+VQAIERYLVVRGY  IR       
Sbjct:  2237 RFFNTHQLKCNLQRHPQCNNLRQWKGGTVKIDPLAMVQAIERYLVVRGYGGIRADSDDDS 2296

Query:   180 XXXXXXXXXXXTLAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXX 238
                         +AAVV++  + RHKLQF IGDH LPYNMTVYQA++QFS +        
Sbjct:  2297 EEDMDD-----NVAAVVLSQASFRHKLQFTIGDHVLPYNMTVYQAVKQFSPLVSEQP--- 2348

Query:   239 XXXXCETESESEAPLGSASVW 259
                  ET++ESE  LG+AS+W
Sbjct:  2349 -----ETDNESETLLGNASIW 2364

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)]

 Score = 357 (130.7 bits), Expect = 5.3e-31, P = 5.3e-31
 Identities = 77/138 (55%), Positives = 88/138 (63%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP CT++KQWKGG VKIDPLALVQAIERYLVVRGY RIR          
Sbjct:  1365 NTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDDG 1424

Query:   183 XXXXXXXXTLAAVVITHGA-RHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G+ RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1425 SDDEIDE-SLAAQFLNSGSVRHRLQFYIGEHLLPYNMTVYQAVRQFSLQAEEERES---- 1479

Query:   242 XCETESESEAPLGSASVW 259
                T+ E+  PLG A +W
Sbjct:  1480 ---TDDEAN-PLGRAGIW 1493

GO:0005622 "intracellular" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISS

GO:0006974 "response to DNA damage stimulus" evidence=IEA;ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1262 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1321

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1322 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1376

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1377 ---TDDESN-PLGRAGIW 1390

GO:0009790 "embryo development" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1262 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1321

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1322 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1376

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1377 ---TDDESN-PLGRAGIW 1390

GO:0006281 "DNA repair" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;IMP;NAS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA;IMP;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=ISS

UNIPROTKB|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1263 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1322

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1323 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1377

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1378 ---TDDESN-PLGRAGIW 1391

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|I3LK74 TRIP12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1299 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1358

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1359 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1413

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1414 ---TDDESN-PLGRAGIW 1427

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1281 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1340

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1341 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSIQAEDERES---- 1395

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1396 ---TDDESN-PLGRAGIW 1409

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

RGD|1306607 Trip12 "thyroid hormone receptor interactor 12" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1295 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1354

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1355 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDERES---- 1409

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1410 ---TDDESN-PLGRAGIW 1423

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0009790 "embryo development" evidence=ISO;ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO;ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO;ISS

MGI|MGI:1309481 Trip12 "thyroid hormone receptor interactor 12" [Mus musculus (taxid:10090)]

 Score = 353 (129.3 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 76/138 (55%), Positives = 86/138 (62%)

Query:   123 NTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVRGYARIRXXXXXXXXXX 182
             NTHQLKC LQRHP C ++KQWKGG VKIDPLALVQAIERYLVVRGY R+R          
Sbjct:  1295 NTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDG 1354

Query:   183 XXXXXXXXTLAAVVITHG-ARHKLQFLIGDHPLPYNMTVYQAIRQFSCVXXXXXXXXXXX 241
                     +LAA  +  G  RH+LQF IG+H LPYNMTVYQA+RQFS             
Sbjct:  1355 SDEEIDE-SLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVRQFSVQAEDERES---- 1409

Query:   242 XCETESESEAPLGSASVW 259
                T+ ES  PLG A +W
Sbjct:  1410 ---TDDESN-PLGRAGIW 1423

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0009790 "embryo development" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG0168|consensus	1051		99.9
KOG0168|consensus	1051		99.35
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	81.67

>KOG0168|consensus

Probab=99.90  E-value=1.9e-24  Score=218.98  Aligned_cols=153  Identities=49%  Similarity=0.724  Sum_probs=126.1

Q ss_pred             cccccCCCCchHHHHHHHHHHHHHhCCCCCCccc--ccccCCCcchHHHHHHHHHhhhhhccccceeeecCCCCCCc---
Q psy10872          6 KISSSATDGSEERQCRLRKFLHVFAKCPLESNVI--VEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLPAGTGS---   80 (259)
Q Consensus         6 ~~ss~~~~~~~~r~~rlr~Fl~vF~~~p~~~~~~--~~~~~~~~~pl~~LV~KL~~~ls~lErFpV~~~d~~~~~g~---   80 (259)
                      +|||- ......|..|+|+|||||+..|++....  +...+....|..+++.|.++||.|+|+||||+||.|.++||   
T Consensus       891 ~lsSg-~t~~s~~~i~~~~fl~~f~~~ple~~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~~~~~r~~  969 (1051)
T KOG0168|consen  891 YLSSG-ETILSVPCIRLRTFLHVFLRLPLEPMLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVKVHDFPAGTGGRGS  969 (1051)
T ss_pred             hcccC-cchhhhHHHHHHHHHHHHhcCCchhhccccccCCCccccchhhhhhcccCCcchhhcCCCccccccCcCCcccc
Confidence            45554 3445689999999999999999976542  35667788999999999999999999999999999997543   


Q ss_pred             hhhhhhhhcccceeeeccCCCccccccccCCceeecchhhhhccccchhccccCCcccccccccCCeeeeccchhhhhhh
Q psy10872         81 TTALKFFNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIE  160 (259)
Q Consensus        81 ssgL~f~~thq~K~~L~R~p~~~~Lkdyssg~vlidpla~l~a~eqL~~rlqR~P~c~~~k~wk~G~~k~~pia~vqAIe  160 (259)
                      ..+++||++|++||.++|||.|+                                   ++|+||||.++++|.+.+|+|+
T Consensus       970 ~~s~~~~n~~dlk~~~~~h~~~~-----------------------------------~~kq~kG~~~~iep~~~~~g~q 1014 (1051)
T KOG0168|consen  970 QFSTSFFNTHDLKCLLQRHPTCK-----------------------------------NCKQLKGGNVKIEPAAEVQGIQ 1014 (1051)
T ss_pred             hhhhheeecccccCccccCcccc-----------------------------------chhhhcCCCcccChhhhchhhH
Confidence            55788888888877777777666                                   9999999999999999999999


Q ss_pred             hHhhhhheeeeccCCCCCCCCCCCCccchhhhHHHH
Q psy10872        161 RYLVVRGYARIRDKDSGESDEDNSEEDIDDTLAAVV  196 (259)
Q Consensus       161 ~yl~vrgY~~~R~~~~~~~dd~~sDeD~dd~~~~~~  196 (259)
                      ||.++|+|+.+|.. -.+++|+ +|+|.|+..++.+
T Consensus      1015 ~~~~~~~~~~~~~D-t~~s~d~-s~~d~d~s~~ak~ 1048 (1051)
T KOG0168|consen 1015 RRSVVRKRGFARVD-TGSSDDD-SDEDFDHSCAAKF 1048 (1051)
T ss_pred             HHHHHhhccccccc-cccCccc-chhhhhhhhhhhc
Confidence            99999999999984 3344444 8888888887544

>KOG0168|consensus

Probab=99.35  E-value=1.1e-13  Score=141.56  Aligned_cols=181  Identities=23%  Similarity=0.233  Sum_probs=123.5

Q ss_pred             ccccccccCCCCchHHHHHHHHHHHHHhCCCCCCc-------ccccccCCCcchHHHHHHHHHhhhhhccccceeeecCC
Q psy10872          3 LDDKISSSATDGSEERQCRLRKFLHVFAKCPLESN-------VIVEHKDCSAEPLAALIAKLNGCVSQLEQLPVKVHDLP   75 (259)
Q Consensus         3 ~~~~~ss~~~~~~~~r~~rlr~Fl~vF~~~p~~~~-------~~~~~~~~~~~pl~~LV~KL~~~ls~lErFpV~~~d~~   75 (259)
                      +-+-|++.-..+.+.|..=-+-|+++|-.+.+..-       .+..+...+..+++.+++||+++|+++|+||++++|++
T Consensus       804 ~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~vl~~v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~  883 (1051)
T KOG0168|consen  804 VADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNVLQEVLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSG  883 (1051)
T ss_pred             HHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCch
Confidence            44566677777777775544444444443332210       01135566788899999999999999999999999988


Q ss_pred             CC-CCc---hhhhhhhhcccceeeeccCCCcc--ccccccCCcee-----------------------------------
Q psy10872         76 AG-TGS---TTALKFFNTHQLKCHLQRHPSCT--SLKQWKGGTVK-----------------------------------  114 (259)
Q Consensus        76 ~~-~g~---ssgL~f~~thq~K~~L~R~p~~~--~Lkdyssg~vl-----------------------------------  114 (259)
                      .. .++   |||++ .+++|.+..+|+.-...  .|.+|.-..|.                                   
T Consensus       884 ~~kn~~~~lsSg~t-~~s~~~i~~~~fl~~f~~~ple~~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~  962 (1051)
T KOG0168|consen  884 SKKNILAYLSSGET-ILSVPCIRLRTFLHVFLRLPLEPMLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVKVHDFPA  962 (1051)
T ss_pred             hhhhhhhhcccCcc-hhhhHHHHHHHHHHHHhcCCchhhccccccCCCccccchhhhhhcccCCcchhhcCCCccccccC
Confidence            72 111   44433 33344333332211111  11222222222                                   


Q ss_pred             -----ecc-hhhhhccccchhccccCCcccccccccCCeeeeccchhhhhhhhHhhhh---heeeeccCCCCCCCCCCCC
Q psy10872        115 -----IDP-LARMCNTHQLKCHLQRHPSCTSLKQWKGGTVKIDPLALVQAIERYLVVR---GYARIRDKDSGESDEDNSE  185 (259)
Q Consensus       115 -----idp-la~l~a~eqL~~rlqR~P~c~~~k~wk~G~~k~~pia~vqAIe~yl~vr---gY~~~R~~~~~~~dd~~sD  185 (259)
                           ... ..+|+++|||+|.+||||   +|++-|  +||+++.+    |||...++   +|..+|+++..+.|+.++|
T Consensus       963 ~~~~r~~~~s~~~~n~~dlk~~~~~h~---~~~~~k--q~kG~~~~----iep~~~~~g~q~~~~~~~~~~~~~Dt~~s~ 1033 (1051)
T KOG0168|consen  963 GTGGRGSQFSTSFFNTHDLKCLLQRHP---TCKNCK--QLKGGNVK----IEPAAEVQGIQRRSVVRKRGFARVDTGSSD 1033 (1051)
T ss_pred             cCCcccchhhhheeecccccCccccCc---cccchh--hhcCCCcc----cChhhhchhhHHHHHHhhccccccccccCc
Confidence                 333 678999999999999999   999999  99999999    99999985   5888999999999999999


Q ss_pred             ccchhhhH
Q psy10872        186 EDIDDTLA  193 (259)
Q Consensus       186 eD~dd~~~  193 (259)
                      ||.|.+..
T Consensus      1034 d~s~~d~d 1041 (1051)
T KOG0168|consen 1034 DDSDEDFD 1041 (1051)
T ss_pred             ccchhhhh
Confidence            99766654

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=81.67  E-value=1.2  Score=41.40  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=23.8

Q ss_pred             cceeeeEeeCCccCCCchhHHHHHHhhh
Q psy10872        201 ARHKLQFLIGDHPLPYNMTVYQAIRQFS  228 (259)
Q Consensus       201 ~~h~lqfli~d~~LPynmTvyQAirQf~  228 (259)
                      ....||||-+|++||++||. ++||+|=
T Consensus       289 p~e~lEl~C~gqvL~~~mtL-aTVr~~~  315 (331)
T PF11816_consen  289 PEEWLELLCNGQVLPPDMTL-ATVRTFI  315 (331)
T ss_pred             CCceEEEEeCCeEcCCcCCH-HHHHHhh
Confidence            46699999999999999995 7899983

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00