Psyllid ID: psy1087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MLHSIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
cccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHHHcHHcccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccc
ccHHHccccHHHHccHHHcHHHHccccEEEccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccEEEEEEEcHEEEHccccccccccccccccccccEEcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHHHHccHHHHccccccccHHHHccccEEEHHHHHcccc
MLHSIVHSTLNQVFQSVANLIKFCddyflynnndeVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLssghfkpargLRVKLLAKydcknnesVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLdsdlfikiEIPEVLAWIEQQneekspnltRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLsaldsapirRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAetqppcipyiglvlqdltfvhignphllpcnelpphvqyknvinfSKRRQQFNIVQNMKRfrsgvhkfprhDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
MLHSIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIeqqneekspnltrartrileqneardrekYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRileqneardrekYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
MLHSIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
****IVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIE**************************EKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILL***
*****************ANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIY*****************LLAKYDC**********************LLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAM********************************************KTCFIYQTAILLNK*
MLHSIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKF***********ARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
*******STLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPP*VQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
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MLHSIVHSTLNQVFQSVANLIKFCDDYFLYNNNDEVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTRARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAMARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALKTCFIYQTAILLNKY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
O770861571 Guanine nucleotide-releas yes N/A 0.744 0.215 0.513 2e-96
Q139051077 Rap guanine nucleotide ex yes N/A 0.722 0.304 0.519 3e-95
Q8IS14812 Ras guanine nucleotide ex yes N/A 0.662 0.370 0.268 2e-27
Q8IS15824 Ras guanine nucleotide ex no N/A 0.748 0.412 0.258 1e-25
Q8SSQ01721 Ras guanine nucleotide ex no N/A 0.610 0.160 0.319 3e-24
Q54PQ4605 Ras guanine nucleotide ex no N/A 0.691 0.519 0.263 2e-22
P048211589 Cell division control pro yes N/A 0.409 0.117 0.359 5e-22
Q8IS211529 Ras guanine nucleotide ex no N/A 0.438 0.130 0.309 6e-22
B0M0P82356 Ras guanine nucleotide ex no N/A 0.687 0.132 0.275 2e-21
Q8IS181037 Ras guanine nucleotide ex no N/A 0.328 0.143 0.349 4e-20
>sp|O77086|C3G_DROME Guanine nucleotide-releasing factor 2 OS=Drosophila melanogaster GN=C3G PE=1 SV=4 Back     alignment and function desciption
 Score =  353 bits (906), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/380 (51%), Positives = 245/380 (64%), Gaps = 42/380 (11%)

Query: 60   DAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVVSELTVYELDD 119
            +AF+TTFRTF  P+++I+KL  RY  F    +  KQ+AA+ETF+ LV+VV++LT  +L  
Sbjct: 1199 EAFITTFRTFIQPIDVIEKLTHRYTYFFCQVQDNKQKAAKETFALLVRVVNDLTSTDLTS 1258

Query: 120  NLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESV------------------- 160
             L+  L +F+YQL+ SG    A+ LR K + K        V                   
Sbjct: 1259 QLLSLLVEFVYQLVCSGQLYLAKLLRNKFVEKVTLYKEPKVYGFVGELGGAGSVGGAGIA 1318

Query: 161  KNEILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNL 220
             +   S         +LL  KS  IAEQMTLLD++LF KIEIPEVL + + Q EEKSPNL
Sbjct: 1319 GSGGCSGTAGGGNQPSLLDLKSLEIAEQMTLLDAELFTKIEIPEVLLFAKDQCEEKSPNL 1378

Query: 221  TR-----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSA 269
             +           AR++IL   +A++REK+V KFIKIMKHLRKMNN+NSYL LLSALDS 
Sbjct: 1379 NKFTEHFNKMSYWARSKILRLQDAKEREKHVNKFIKIMKHLRKMNNYNSYLALLSALDSG 1438

Query: 270  PIRRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGN 329
            PIRRLEWQK ITE ++ +CALIDS+SSFRAYRQALAET PPCIPYIGL+LQDLTFVH+GN
Sbjct: 1439 PIRRLEWQKGITEEVRSFCALIDSSSSFRAYRQALAETNPPCIPYIGLILQDLTFVHVGN 1498

Query: 330  PHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDF 389
               L           K VINFSKR QQ+NI+ NMKRF+   + F R++RII FF NF DF
Sbjct: 1499 QDYL----------SKGVINFSKRWQQYNIIDNMKRFKKCAYPFRRNERIIRFFDNFKDF 1548

Query: 390  LSEEAMARTRILEQNEARDR 409
            + EE M   +I E+ + R R
Sbjct: 1549 MGEEEM--WQISEKIKPRGR 1566
Guanine nucleotide-releasing protein that binds to SH3 domain of Crk. Transduces signals from Crk to activate RAS. Also involved in MAPK activation.
Drosophila melanogaster (taxid: 7227)
>sp|Q13905|RPGF1_HUMAN Rap guanine nucleotide exchange factor 1 OS=Homo sapiens GN=RAPGEF1 PE=1 SV=3 Back     alignment and function description
>sp|Q8IS14|GEFJ_DICDI Ras guanine nucleotide exchange factor J OS=Dictyostelium discoideum GN=gefJ PE=2 SV=1 Back     alignment and function description
>sp|Q8IS15|GEFI_DICDI Ras guanine nucleotide exchange factor I OS=Dictyostelium discoideum GN=gefI PE=2 SV=1 Back     alignment and function description
>sp|Q8SSQ0|GEFR_DICDI Ras guanine nucleotide exchange factor R OS=Dictyostelium discoideum GN=gefR PE=1 SV=1 Back     alignment and function description
>sp|Q54PQ4|GEFA_DICDI Ras guanine nucleotide exchange factor A OS=Dictyostelium discoideum GN=gefA PE=2 SV=1 Back     alignment and function description
>sp|P04821|CDC25_YEAST Cell division control protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC25 PE=1 SV=1 Back     alignment and function description
>sp|Q8IS21|GEFB_DICDI Ras guanine nucleotide exchange factor B OS=Dictyostelium discoideum GN=gefB PE=2 SV=1 Back     alignment and function description
>sp|B0M0P8|GEFL_DICDI Ras guanine nucleotide exchange factor L OS=Dictyostelium discoideum GN=gefL PE=2 SV=1 Back     alignment and function description
>sp|Q8IS18|GEFE_DICDI Ras guanine nucleotide exchange factor E OS=Dictyostelium discoideum GN=gefE PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
345488345 1281 PREDICTED: hypothetical protein LOC10011 0.737 0.261 0.669 1e-133
345488351 1182 PREDICTED: hypothetical protein LOC10011 0.737 0.283 0.669 1e-133
345488347 1225 PREDICTED: hypothetical protein LOC10011 0.737 0.273 0.669 1e-133
345488349 1230 PREDICTED: hypothetical protein LOC10011 0.722 0.266 0.677 1e-132
350416114 1240 PREDICTED: guanine nucleotide-releasing 0.788 0.288 0.627 1e-131
328788583 1231 PREDICTED: guanine nucleotide-releasing 0.788 0.290 0.625 1e-131
383864502 1239 PREDICTED: guanine nucleotide-releasing 0.788 0.288 0.625 1e-130
380013905 1176 PREDICTED: guanine nucleotide-releasing 0.788 0.304 0.625 1e-130
340729416 592 PREDICTED: guanine nucleotide-releasing 0.788 0.604 0.627 1e-130
307179548 1193 Guanine nucleotide-releasing factor 2 [C 0.737 0.280 0.663 1e-130
>gi|345488345|ref|XP_003425883.1| PREDICTED: hypothetical protein LOC100118982 isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/360 (66%), Positives = 285/360 (79%), Gaps = 25/360 (6%)

Query: 50   QADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFLVQVV 109
            +A+K   LYQ+AFLTT+RTF +PLE+IKKL  R+ +F  S +V KQRAARE FS LV+VV
Sbjct: 914  KANKHDFLYQEAFLTTYRTFMSPLELIKKLHRRHQRFSCSPDVVKQRAAREAFSLLVRVV 973

Query: 110  SELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEILSSLN 169
            S+LT+ +LDDNL++ L +F+ QL+ SG    A+ LRVK+L K+ CK  ++V+  ILSSL+
Sbjct: 974  SDLTISDLDDNLLQTLMEFVQQLVCSGDLTMAKALRVKILEKHACKQQQTVQ-PILSSLS 1032

Query: 170  VYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTR------- 222
            V T   +LL FKSE IAEQMTLLD++LF+KIEIPEVL W ++QNEE+SPNLTR       
Sbjct: 1033 VSTKQASLLDFKSEQIAEQMTLLDAELFMKIEIPEVLVWAQEQNEERSPNLTRFTEHFNK 1092

Query: 223  ----ARTRILE---QNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE 275
                AR+RILE   +NEA+DREKYVVKFIKIMKHLRK+NNFNSYL LLSALDSAPIRRLE
Sbjct: 1093 MSYWARSRILEHRMENEAKDREKYVVKFIKIMKHLRKINNFNSYLALLSALDSAPIRRLE 1152

Query: 276  WQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPC 335
            WQKHITEGLKEYCALIDS+SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGN  LLP 
Sbjct: 1153 WQKHITEGLKEYCALIDSSSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNSDLLP- 1211

Query: 336  NELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAM 395
                        INFSKR QQFNIV+NMKRF+ G + F +++RII FF+NF DFL EEAM
Sbjct: 1212 ---------DGSINFSKRWQQFNIVENMKRFKKGTYSFKKNERIITFFNNFSDFLCEEAM 1262

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345488351|ref|XP_003425885.1| PREDICTED: hypothetical protein LOC100118982 isoform 4 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345488347|ref|XP_001602841.2| PREDICTED: hypothetical protein LOC100118982 isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345488349|ref|XP_003425884.1| PREDICTED: hypothetical protein LOC100118982 isoform 3 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350416114|ref|XP_003490846.1| PREDICTED: guanine nucleotide-releasing factor 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328788583|ref|XP_393346.3| PREDICTED: guanine nucleotide-releasing factor 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383864502|ref|XP_003707717.1| PREDICTED: guanine nucleotide-releasing factor 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380013905|ref|XP_003690985.1| PREDICTED: guanine nucleotide-releasing factor 2-like [Apis florea] Back     alignment and taxonomy information
>gi|340729416|ref|XP_003402999.1| PREDICTED: guanine nucleotide-releasing factor 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307179548|gb|EFN67862.1| Guanine nucleotide-releasing factor 2 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
ZFIN|ZDB-GENE-081105-261085 rapgef1a "Rap guanine nucleoti 0.746 0.312 0.534 4.3e-94
ZFIN|ZDB-GENE-040426-10011080 rapgef1b "Rap guanine nucleoti 0.779 0.327 0.502 2.7e-92
FB|FBgn02592281571 C3G "C3G ortholog (H. sapiens) 0.488 0.141 0.616 2.5e-91
UNIPROTKB|Q139051077 RAPGEF1 "Rap guanine nucleotid 0.784 0.330 0.501 3e-91
UNIPROTKB|Q5JUE61023 RAPGEF1 "Rap guanine nucleotid 0.784 0.347 0.501 3e-91
UNIPROTKB|Q68DL31094 DKFZp781P1719 "Rap guanine nuc 0.784 0.325 0.501 3e-91
UNIPROTKB|F1MJY21238 F1MJY2 "Uncharacterized protei 0.784 0.287 0.506 5.6e-91
UNIPROTKB|J9P7261270 RAPGEF1 "Uncharacterized prote 0.784 0.280 0.506 1e-90
UNIPROTKB|F1PH971225 RAPGEF1 "Uncharacterized prote 0.784 0.290 0.487 1.6e-86
UNIPROTKB|E1BS601052 RAPGEF1 "Uncharacterized prote 0.700 0.302 0.504 9.3e-84
ZFIN|ZDB-GENE-081105-26 rapgef1a "Rap guanine nucleotide exchange factor (GEF) 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 893 (319.4 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
 Identities = 195/365 (53%), Positives = 253/365 (69%)

Query:    45 VAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSF 104
             V   E   K++ LY +AFLTT+RTF TP ++IKKL  RY +F  SS+  KQRA++ TF  
Sbjct:   710 VHATETDRKDRVLYCEAFLTTYRTFLTPEDLIKKLRYRYTRFSLSSDSIKQRASKNTFFV 769

Query:   105 LVQVVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYDCKNNESVKNEI 164
             LV+VV EL + EL ++++K L + ++ LL  G    AR LR  +L K   K      N +
Sbjct:   770 LVRVVDELCLVELTEDILKQLMELVFNLLCKGELTLARVLRKNILDKVQQKKLLQYTNSL 829

Query:   165 --LSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVLAWIEQQNEEKSPNLTR 222
               L++  V     TL  F+S  IA+Q+TLLD++LF KIEIPEVL W ++QNEEKSPNLT+
Sbjct:   830 KTLAARGVAARPGTLHDFRSHEIADQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQ 889

Query:   223 -----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPI 271
                         R+ I+ Q +A+DREK ++KFIKIMKHLRK+NNFNSYL +LSALDSAPI
Sbjct:   890 FTEHFNNMSYWVRSIIILQEKAQDREKLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPI 949

Query:   272 RRLEWQKHITEGLKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPH 331
             RRLEWQK  +EGL+EYC LIDS+SSFRAYR ALA+ +PPCIPY+GL+LQDLTFVH+GNP 
Sbjct:   950 RRLEWQKQTSEGLEEYCTLIDSSSSFRAYRAALADVEPPCIPYLGLILQDLTFVHLGNPD 1009

Query:   332 LLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRH-DRIIEFFSNFDDFL 390
                      H++ K  INFSKR QQFNI+  M+RF+  VH   +H D I+ FF++F D L
Sbjct:  1010 ---------HIEGK--INFSKRWQQFNILDTMRRFQQ-VHYDLKHNDDIVSFFNDFSDHL 1057

Query:   391 SEEAM 395
             +EEA+
Sbjct:  1058 AEEAL 1062
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0007264 "small GTPase mediated signal transduction" evidence=IEA
GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA
ZFIN|ZDB-GENE-040426-1001 rapgef1b "Rap guanine nucleotide exchange factor (GEF) 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0259228 C3G "C3G ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q13905 RAPGEF1 "Rap guanine nucleotide exchange factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JUE6 RAPGEF1 "Rap guanine nucleotide exchange factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q68DL3 DKFZp781P1719 "Rap guanine nucleotide exchange factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJY2 F1MJY2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P726 RAPGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PH97 RAPGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BS60 RAPGEF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O77086C3G_DROMENo assigned EC number0.51310.74440.2151yesN/A
Q13905RPGF1_HUMANNo assigned EC number0.51980.72240.3045yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 2e-48
pfam00617185 pfam00617, RasGEF, RasGEF domain 6e-46
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 6e-45
pfam00617185 pfam00617, RasGEF, RasGEF domain 5e-08
cd00155 237 cd00155, RasGEF, Guanine nucleotide exchange facto 6e-08
smart00147 242 smart00147, RasGEF, Guanine nucleotide exchange fa 3e-07
cd06224122 cd06224, REM, Guanine nucleotide exchange factor f 2e-06
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
 Score =  165 bits (420), Expect = 2e-48
 Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 31/233 (13%)

Query: 177 LLAFKSEHIAEQMTLLDSDLFIKIEIPE---VLAWIEQQNEEKSPNLTRARTR------- 226
            L+   + +AEQ+TLLD +LF KIE  E    L   + +N   SPNL R   R       
Sbjct: 1   FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNW 60

Query: 227 ----ILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEWQK-HIT 281
               IL     + R + + KFI++ KH R++NNFNS + ++SAL S+PI RL+     ++
Sbjct: 61  VASEILLCTNPKKRARLLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLS 120

Query: 282 EGLKEYCA----LIDSTSSFRAYRQALAE--TQPPCIPYIGLVLQDLTFVHIGNPHLLPC 335
             LK+       L+D + +F+ YR+ L      PPC+P++G+ L+DLTF+H GNP  L  
Sbjct: 121 SKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFLGVYLKDLTFLHEGNPDFLE- 179

Query: 336 NELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDD 388
                     N++NF KRR+   I++ +++ +S  ++  R + I+ F     +
Sbjct: 180 ---------GNLVNFEKRRKIAEILREIRQLQSNSYELNRDEDILAFLWKLLE 223

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors. Length = 237
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|100121 cd06224, REM, Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
KOG3629|consensus 728 100.0
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 100.0
KOG2378|consensus573 100.0
KOG3542|consensus 1283 100.0
KOG3541|consensus477 100.0
KOG3417|consensus 840 99.83
KOG3417|consensus840 99.6
cd06224122 REM Guanine nucleotide exchange factor for Ras-lik 99.5
smart00229127 RasGEFN Guanine nucleotide exchange factor for Ras 99.45
PF00618104 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR00 99.45
KOG3542|consensus 1283 97.23
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 97.13
cd00155 237 RasGEF Guanine nucleotide exchange factor for Ras- 96.83
smart00147 242 RasGEF Guanine nucleotide exchange factor for Ras- 96.72
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
Probab=100.00  E-value=3.1e-48  Score=374.89  Aligned_cols=219  Identities=37%  Similarity=0.705  Sum_probs=202.8

Q ss_pred             ccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCc-hHHH-----------HHHHhhCCCCHhhHHHHHHH
Q psy1087         177 LLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSP-NLTR-----------ARTRILEQNEARDREKYVVK  242 (454)
Q Consensus       177 ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~p-ni~~-----------v~~~Il~~~~~~~Ra~~i~k  242 (454)
                      +++++|.+||+|||++|+++|++|+|.||+  .|.+.+....+| ||.+           |+.+||.++++++|++++++
T Consensus         1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~   80 (242)
T smart00147        1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK   80 (242)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            468999999999999999999999999999  688877666778 8876           78999999999999999999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccH---HHHHHHHHHhCCCCcHHHHHHHHhccC-CCcccchh
Q psy1087         243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHIT---EGLKEYCALIDSTSSFRAYRQALAETQ-PPCIPYIG  316 (454)
Q Consensus       243 fI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~---~~l~~l~~l~~~~~n~~~yR~~l~~~~-~p~IPflg  316 (454)
                      ||+||.+|.++||||+++||++||++++|+||+  |+.++.   +.+++|++++++++||++||++++++. +|||||+|
T Consensus        81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg  160 (242)
T smart00147       81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG  160 (242)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence            999999999999999999999999999999998  988764   568899999999999999999999987 99999999


Q ss_pred             hhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHHHhhcCCCCCCCc-hHHHHHHHhC-CCCCCHHH
Q psy1087         317 LVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRH-DRIIEFFSNF-DDFLSEEA  394 (454)
Q Consensus       317 ~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~f~~~-~~i~~~l~~~-~~~~~e~~  394 (454)
                      ++|+|++++++|+|++.++|          +|||.|+|+++++|..++.||+.+|+|.++ ++||.+|.++ ....++|+
T Consensus       161 ~~l~dl~~~~~~~~~~~~~~----------~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~~~~~~~~~  230 (242)
T smart00147      161 VLLKDLTFIDEGNPDFLENG----------LVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLLDHLDEEEE  230 (242)
T ss_pred             HHHHHHHHHHccCcccccCC----------cccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhcCCHHH
Confidence            99999999999999998777          999999999999999999999999999999 9999999997 44457779


Q ss_pred             HHHhhhhcchhhh
Q psy1087         395 MARTRILEQNEAR  407 (454)
Q Consensus       395 ly~~Sl~~~~e~~  407 (454)
                      +|++|+  +.||+
T Consensus       231 ~~~~S~--~~EP~  241 (242)
T smart00147      231 LYQLSL--KIEPR  241 (242)
T ss_pred             HHHHHH--HhCCC
Confidence            999999  46664

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG2378|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved [] Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
3ksy_A1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 1e-19
1xd4_A852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 2e-19
1xdv_A847 Experimentally Phased Structure Of Human The Son Of 2e-19
1bkd_S477 Complex Of Human H-Ras With Human Sos-1 Length = 47 3e-19
2ii0_A490 Crystal Structure Of Catalytic Domain Of Son Of Sev 3e-19
1nvu_S481 Structural Evidence For Feedback Activation By Rasg 4e-19
1xd2_C484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 4e-19
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 2e-18
3cf6_E694 Structure Of Epac2 In Complex With Cyclic-Amp And R 4e-14
2byv_E999 Structure Of The Camp Responsive Exchange Factor Ep 5e-14
4f7z_A999 Conformational Dynamics Of Exchange Protein Directl 5e-14
3qxl_A271 Crystal Structure Of The Cdc25 Domain From Ral-Spec 1e-10
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure 
Iteration: 1

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 164/393 (41%), Gaps = 74/393 (18%)
Query: 56  HLYQD-----AFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAA------------ 98
           H+Y D      FLTT+R+F  P E++  +I+R+ +       +  R A            
Sbjct: 616 HMYADPNFVRTFLTTYRSFCKPQELLSLIIERF-EIPEPEPTEADRIAIENGDQPLSAEL 674
Query: 99  ---RETFSFLVQ----------VVSELTVYELDDNLVKYLTDFIYQLLSSGHFKPARGLR 145
              R+ +   VQ          V      +E D  L++ + +FI  +      K    + 
Sbjct: 675 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 734
Query: 146 VKLLAKYDCKNNESVKN-EILSSLNVYTTH---------YTLLAFKSEHIAEQMTLLDSD 195
             +  K   ++N    N    SS      H         + LL      IA Q+TLL+SD
Sbjct: 735 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 794
Query: 196 LFIKIEIPEVLA--WIEQQNEEKSPNLTRA-----------RTRILEQNEARDREKYVVK 242
           L+  ++  E++   W ++  E  SPNL +               I+E     +R   V +
Sbjct: 795 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 854
Query: 243 FIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLEW--------QKHITEGLKEYCALIDST 294
            I+I++  +++NNFN  L ++SA++S+P+ RL+         QK I E   E      S 
Sbjct: 855 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL-----SE 909
Query: 295 SSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRR 354
             ++ Y   L    PPC+P+ G+ L ++     GNP +L           K +INFSKRR
Sbjct: 910 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL-------KRHGKELINFSKRR 962
Query: 355 QQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFD 387
           +   I   ++++++  +       I  FF N +
Sbjct: 963 KVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 995
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 Back     alignment and structure
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 Back     alignment and structure
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 Back     alignment and structure
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 3e-63
2ije_S 240 Guanine nucleotide-releasing protein; rasgrf1, CDC 2e-09
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 2e-62
2ii0_A 490 SOS-1, SON of sevenless homolog 1; signaling prote 8e-09
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 1e-61
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 3e-08
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 5e-58
3qxl_A 271 RAS-specific guanine nucleotide-releasing factor; 1e-09
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 3e-53
2byv_E 999 RAP guanine nucleotide exchange factor 4; EPAC2, C 3e-11
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 4e-52
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 6e-10
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 2e-16
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
 Score =  204 bits (520), Expect = 3e-63
 Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 28/232 (12%)

Query: 182 SEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPNLTR-----------ARTRIL 228
           +  IAEQ+TLLD  +F  I   E     W++ +  E++P + +             + I+
Sbjct: 6   ALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEII 65

Query: 229 EQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQ---KHITEG 283
              +   R   + K++ +    R ++N+N+ L + S+++ + I RL+  W    K     
Sbjct: 66  RNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSL 125

Query: 284 LKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQ 343
           L +   L+ S   F+  R++L    PPC+PY+G+ L DL F+  G P+            
Sbjct: 126 LDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTE--------- 176

Query: 344 YKNVINFSKRRQQFNIVQNMKRFRSGVHKFPRHDRIIEFFSNFDDFLSEEAM 395
              ++NFSK R   +I++ +++F+   +K     ++I++  +    L EE++
Sbjct: 177 -DGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESL 227
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 100.0
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 100.0
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 100.0
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 100.0
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 100.0
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 99.3
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 99.27
2ije_S 240 Guanine nucleotide-releasing protein; rasgrf1, CDC 97.66
3qxl_A 271 RAS-specific guanine nucleotide-releasing factor; 97.66
2ii0_A 490 SOS-1, SON of sevenless homolog 1; signaling prote 97.23
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 97.11
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 97.0
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 96.71
3t6a_A 333 Breast cancer anti-estrogen resistance protein 3; 83.19
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
Probab=100.00  E-value=4.3e-67  Score=552.49  Aligned_cols=377  Identities=23%  Similarity=0.398  Sum_probs=292.3

Q ss_pred             ccCCcccccCCC-------CCccchHHHHHHhcccCCCcChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCChhH---
Q psy1087          23 FCDDYFLYNNND-------EVNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEV---   92 (454)
Q Consensus        23 ~~~~~l~~~~~~-------~~~~~~~~~LI~~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~~~---   92 (454)
                      +.+++|+|++++       .+.|+++++||++||++...|+.|+.+||+|||+||||.+||++|++||+.+.+...+   
T Consensus        22 D~~~~ii~~~~~~~~~g~~~IkagTL~~LVe~Lt~~~~~D~~f~~~FLlTyRsF~tp~eLL~~Li~Ry~~~~p~~~~~~~  101 (490)
T 2ii0_A           22 DSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADR  101 (490)
T ss_dssp             CCTTTEEEC-------CCCCEEEECHHHHHHHHTCSSSCCHHHHHHHHHHGGGTSCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_pred             CCCCCeEEecCCCCcCCCceeeecCHHHHHHHHccCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccCCCchhhhh
Confidence            467789997764       2335555999999999888999999999999999999999999999999886543211   


Q ss_pred             -------------HH------HHHHHHHhhhhheeeeecccccc--CHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHhh
Q psy1087          93 -------------QK------QRAARETFSFLVQVVSELTVYEL--DDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAK  151 (454)
Q Consensus        93 -------------~k------~~~~~~~i~~~lr~~~~~~~~Df--~~~ll~~l~~Fl~~~~~~~~~~~a~~l~~~ll~k  151 (454)
                                   .+      +..++..+..+++.|.+.+++||  ++.+++.|.+|+..+........+..+. +++++
T Consensus       102 ~~~~~g~~~~~~~~~~~~~~~~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~~~~~~~~~~~~l~-~~l~~  180 (490)
T 2ii0_A          102 IAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT-KIIQR  180 (490)
T ss_dssp             HHHHTTCSCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTCCCTTTHHHHHHHH-HHHHH
T ss_pred             hhhccCCccchHHHHHHHHhhhhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhccchhHHHHHHHHH-HHHHH
Confidence                         01      12334456667788888889998  4689999999998753221111122232 22222


Q ss_pred             -hhcccCC-------CCCcccccc---CCCCCCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCc
Q psy1087         152 -YDCKNNE-------SVKNEILSS---LNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSP  218 (454)
Q Consensus       152 -~~~~~~~-------~~~~~~l~~---~~~~~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~p  218 (454)
                       .....+.       ..++|.++.   .......+++++++|.|||+|||++|+++|++|+|.||+  .|++.++...+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~p  260 (490)
T 2ii0_A          181 KKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSP  260 (490)
T ss_dssp             HHHC----------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCH
T ss_pred             HHhcccCCCCcccccCCCCCccccccCCCCCcccchhhccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCc
Confidence             1111100       001111111   011124577899999999999999999999999999999  698765556789


Q ss_pred             hHHH-----------HHHHhhCCCCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccHHHHH
Q psy1087         219 NLTR-----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLK  285 (454)
Q Consensus       219 ni~~-----------v~~~Il~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~~~l~  285 (454)
                      |+.+           |+++||.+.++++||++|++||+||.+|+++|||||+|||++||++++|+||+  |+.++.+..+
T Consensus       261 nl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~  340 (490)
T 2ii0_A          261 NLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKK  340 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHH
T ss_pred             cHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHH
Confidence            8765           88999999999999999999999999999999999999999999999999999  9999875544


Q ss_pred             HHHHHhC-CCCcHHHHHHHHhccCCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHHH
Q psy1087         286 EYCALID-STSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMK  364 (454)
Q Consensus       286 ~l~~l~~-~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i~  364 (454)
                      .++++.+ +++||++||+++++..+|||||+|+||+||+|+++|||+++++|       +..+|||+|+|+++++|.+|+
T Consensus       341 ~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~-------~~~lINf~K~r~~~~ii~~i~  413 (490)
T 2ii0_A          341 ILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRH-------GKELINFSKRRKVAEITGEIQ  413 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEEEET-------TEEEEEHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhchHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCcccCCC-------CCeEEcHHHHHHHHHHHHHHH
Confidence            4444332 35789999999999999999999999999999999999998654       245999999999999999999


Q ss_pred             HhhcCCCCCCCchHHHHHHHhCCCC--CC----HHHHHHhhhhcchhhhhh
Q psy1087         365 RFRSGVHKFPRHDRIIEFFSNFDDF--LS----EEAMARTRILEQNEARDR  409 (454)
Q Consensus       365 ~~Q~~~Y~f~~~~~i~~~l~~~~~~--~~----e~~ly~~Sl~~~~e~~~r  409 (454)
                      +||+.+|+|.++++|++||.+++..  .+    ||++|++|+  +.|||..
T Consensus       414 ~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl--~~EPr~~  462 (490)
T 2ii0_A          414 QYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSL--EIEPRNP  462 (490)
T ss_dssp             GGSSCCCSCCCCHHHHHHHHTCCTTTTSCHHHHHHHHHHHHH--HHSCCTT
T ss_pred             HHhcCCCCCCccHHHHHHHHhccccccCchhhhHHHHHHHHH--hhCCCCC
Confidence            9999999999999999999987643  35    367999999  4666653
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1nvus_481 a.117.1.1 (S:) Son of sevenless protein homolog 1 2e-54
d1nvus_ 481 a.117.1.1 (S:) Son of sevenless protein homolog 1 2e-06
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  186 bits (474), Expect = 2e-54
 Identities = 89/421 (21%), Positives = 174/421 (41%), Gaps = 64/421 (15%)

Query: 58  YQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQKQRAARETFSFL------------ 105
           +   FLTT+R+F  P E++  +I+R+           + A       L            
Sbjct: 58  FVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 117

Query: 106 ----VQVVSELTVY--------ELDDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAKYD 153
               ++V++    +        E D  L++ + +FI  +      K    +   +  K  
Sbjct: 118 QPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKI 177

Query: 154 CKNNESVKN----------EILSSLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIP 203
            ++N    N          E   S   +   + LL      IA Q+TLL+SDL+  ++  
Sbjct: 178 ARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPS 237

Query: 204 EVL--AWIEQQNEEKSPNLTR-----------ARTRILEQNEARDREKYVVKFIKIMKHL 250
           E++   W ++  E  SPNL +               I+E     +R   V + I+I++  
Sbjct: 238 ELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVF 297

Query: 251 RKMNNFNSYLGLLSALDSAPIRRLE--WQKHITEGLKEYCALID-STSSFRAYRQALAET 307
           +++NNFN  L ++SA++S+P+ RL+  +++  +   K      + S   ++ Y   L   
Sbjct: 298 QELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI 357

Query: 308 QPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNMKRFR 367
            PPC+P+ G+ L ++     GNP +L  +        K +INFSKRR+   I   +++++
Sbjct: 358 NPPCVPFFGIYLTNILKTEEGNPEVLKRHG-------KELINFSKRRKVAEITGEIQQYQ 410

Query: 368 SGVHKFPRHDRIIEFFSNF-------DDFLSEEAMARTRILEQNEARDREKYVVKFIKIM 420
           +  +       I  FF N        +   ++    ++  +E    +   ++  K+   +
Sbjct: 411 NQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPL 470

Query: 421 K 421
           K
Sbjct: 471 K 471
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d1nvus_481 Son of sevenless protein homolog 1 (sos-1) {Human 100.0
d1nvus_ 481 Son of sevenless protein homolog 1 (sos-1) {Human 97.11
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-66  Score=541.08  Aligned_cols=376  Identities=23%  Similarity=0.403  Sum_probs=298.3

Q ss_pred             ccCCcccccCCCC-------CccchHHHHHHhcccCCCcChhhHHHHHhhcccCCChHHHHHHHHHHhccCCCChhHHH-
Q psy1087          23 FCDDYFLYNNNDE-------VNEELAKECVAQVEQADKEKHLYQDAFLTTFRTFKTPLEIIKKLIDRYHKFVSSSEVQK-   94 (454)
Q Consensus        23 ~~~~~l~~~~~~~-------~~~~~~~~LI~~Lt~~~~~D~~f~~~FLlTyrsFttp~~LL~~Li~Rf~~~~~~~~~~k-   94 (454)
                      +.+++|+|++++.       +.|+++++||++||+++..|+.|+++||+|||+||||.+||++|++||+.+.++..+.. 
T Consensus        16 d~~~~i~~~~~~~~~~~~~~ik~gTl~~LIe~Lt~~~~~D~~F~~~FLlTYRsF~Tp~eLL~~Li~Rf~~~~~e~~~~~~   95 (481)
T d1nvus_          16 DSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADR   95 (481)
T ss_dssp             CCTTTEEECC------CCCCEEEECHHHHHHHHTCSSCCCHHHHHHHHHHGGGTSCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_pred             CCCCCeecccCCccCCCCceeeecCHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCcchhhHH
Confidence            4667899988764       44555699999999998899999999999999999999999999999998755432210 


Q ss_pred             ---------------------HHHHHHHhhhhheeeeecccccc--CHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHhh
Q psy1087          95 ---------------------QRAARETFSFLVQVVSELTVYEL--DDNLVKYLTDFIYQLLSSGHFKPARGLRVKLLAK  151 (454)
Q Consensus        95 ---------------------~~~~~~~i~~~lr~~~~~~~~Df--~~~ll~~l~~Fl~~~~~~~~~~~a~~l~~~ll~k  151 (454)
                                           ...++..+..+++.|.+.++.||  +..+++.+.+|+......+....++.+...+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~rVl~~l~~Wve~~~~df~~d~~ll~~l~~f~~~~~~~~~~~~~~~l~~~~~~~  175 (481)
T d1nvus_          96 IAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRK  175 (481)
T ss_dssp             HHHHTTCCCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHHHCCSTTTHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence                                 11223344556777777788898  5689999999999876544333333332222122


Q ss_pred             hhcccC------C-CCCccccc---cCCCCCCcccccCCCHHHHHHHHhHHHHHHhcCCChHHHH--HhhhhcCCCCCch
Q psy1087         152 YDCKNN------E-SVKNEILS---SLNVYTTHYTLLAFKSEHIAEQMTLLDSDLFIKIEIPEVL--AWIEQQNEEKSPN  219 (454)
Q Consensus       152 ~~~~~~------~-~~~~~~l~---~~~~~~~~~~ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l--~w~~~~~~~~~pn  219 (454)
                      ......      . ...+|..+   ........+++++++|.+||+|||++|+++|++|+|.||+  .|++++....+||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QLTl~~~~~f~~I~~~E~l~~~~~~~~~~~~~pn  255 (481)
T d1nvus_         176 KIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPN  255 (481)
T ss_dssp             HHC------CCCCCSSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHTCCGGGTGGGGGGSTTHHHHCHH
T ss_pred             HhhhccCccccccccCCCCccccccCCCCCCCCcccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcccCCCCCCCc
Confidence            111110      0 00111111   1122345678999999999999999999999999999998  6988766667999


Q ss_pred             HHH-----------HHHHhhCCCCHhhHHHHHHHHHHHHHHHhhcCChhhHHHHHhhcCcCcccccc--cccccHH---H
Q psy1087         220 LTR-----------ARTRILEQNEARDREKYVVKFIKIMKHLRKMNNFNSYLGLLSALDSAPIRRLE--WQKHITE---G  283 (454)
Q Consensus       220 i~~-----------v~~~Il~~~~~~~Ra~~i~kfI~vA~~~~~l~NFns~~aI~sgL~~~~I~RLk--w~~~~~~---~  283 (454)
                      |.+           |+++||.++++++||++|++||+||.+|+++||||++|||++||++++|+||+  |+.++.+   .
T Consensus       256 i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~  335 (481)
T d1nvus_         256 LLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKI  335 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCcchHHHHHHHhCCHHHHHH
Confidence            876           89999999999999999999999999999999999999999999999999998  9988764   5


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHhccCCCcccchhhhhhhHHHHhhcCCCCCCCCCCCCCCCCcceeehhhhhhhhHHHHHH
Q psy1087         284 LKEYCALIDSTSSFRAYRQALAETQPPCIPYIGLVLQDLTFVHIGNPHLLPCNELPPHVQYKNVINFSKRRQQFNIVQNM  363 (454)
Q Consensus       284 l~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egn~~~~~~g~~p~~~~~~~lINf~K~r~i~~ii~~i  363 (454)
                      +++++.+++  +||++||+.+.+..+|||||+|+||+||+++++|||++++++       +.++|||.|+++++++|.++
T Consensus       336 ~~~l~~l~~--~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~-------~~~lINf~K~~~i~~~i~~i  406 (481)
T d1nvus_         336 LEEAHELSE--DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRH-------GKELINFSKRRKVAEITGEI  406 (481)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEEEET-------TEEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc--hhHHHHHHHHhcCCCCeEeeeccHHHHHHHHHhcCCccccCC-------CCceEcHHHHHHHHHHHHHH
Confidence            677777764  799999999999999999999999999999999999998643       23499999999999999999


Q ss_pred             HHhhcCCCCCCCchHHHHHHHhCCCCC------CHHHHHHhhhhcchhhhhh
Q psy1087         364 KRFRSGVHKFPRHDRIIEFFSNFDDFL------SEEAMARTRILEQNEARDR  409 (454)
Q Consensus       364 ~~~Q~~~Y~f~~~~~i~~~l~~~~~~~------~e~~ly~~Sl~~~~e~~~r  409 (454)
                      ++||+.+|+|.++++||+||.++....      +||++|++|+  +.|||+.
T Consensus       407 ~~~Q~~~y~~~~~~~i~~~l~~~~~~~~~~~~~~~d~l~~lS~--~~EPr~~  456 (481)
T d1nvus_         407 QQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSL--EIEPRNP  456 (481)
T ss_dssp             HHHHSCCCCCCCCHHHHHHHHTCCTTTTCCHHHHHHHHHHHHH--HHSCCTT
T ss_pred             HHHhcCCCCCCcChHHHHHHHhhhhhhhhhhccchHHHHHHHH--HhCCCCC
Confidence            999999999999999999999876432      3789999999  4666653
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure