Psyllid ID: psy10883

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----

MGARQNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNSSPSLSSSSCGENQVPRCSQYAAMTMC

ccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHcccc

ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEc

mgarqnpelSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLrnvssnpqsqmhMVVNQILYpvvqgcetkdQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHfakdsttintaGATVRHLVSHVFERVlleddqfreedhkprninyeelktpsnippkgirpcagdAYLMFQDLVQLvntdqpywlIGMTEMTRTFGLELLESILInypsvfykhpefsFLLKERVCALVIKLFspnikyrnnalsssgssqqnapldkpyfpisVRLLRVVSILVQKYHVLLVTECEIFLSLIIKfldpdkpvwqRSLALEVLHKLCVQTELLKAFCQsydlkdhtTHIFQDIVNSLATYVHSVFlnsspslsssscgenqvprcsqyaamtmc

mgarqnpelsLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVlleddqfreedhkprninyeelktpsnippkGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALsssgssqqnapLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNSSpslsssscgenqvPRCSQYAAMTMC

MGARQNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPisvrllrvvsilvQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNsspslssssCGENQVPRCSQYAAMTMC

**********************************I*EACEEGILKL**********MHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLED***************************GIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYR*****************KPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFL****************************

***************SLQNDLK********************ILK**************VVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLH**************VRHLVSHVFERVLLEDD*****************************PCAGDAYLMFQDLV****************MTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIK****************PLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVH****************************MTMC

********LSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNA***********PLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNSS************VPRCSQYAAMTMC

******PELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLED*************************PKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNS******************QYAAMTMC

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		435	2.2.26 [Sep-21-2011]
Q9VLT1		1684	Protein MON2 homolog OS=D	yes	N/A	0.924	0.238	0.602	1e-135
Q29L43		1701	Protein MON2 homolog OS=D	yes	N/A	0.933	0.238	0.588	1e-133
Q6GP04		1721	Protein MON2 homolog OS=X	N/A	N/A	0.954	0.241	0.514	1e-124
Q80TL7		1715	Protein MON2 homolog OS=M	yes	N/A	0.908	0.230	0.530	1e-122
Q7Z3U7		1718	Protein MON2 homolog OS=H	yes	N/A	0.940	0.238	0.505	1e-122
Q19338		1646	Monensin-resistant homolo	yes	N/A	0.940	0.248	0.406	6e-87
Q61SD1		1645	Protein MON2 homolog OS=C	N/A	N/A	0.898	0.237	0.425	4e-86
Q09853		1616	Protein MON2 homolog OS=S	yes	N/A	0.790	0.212	0.252	3e-20
P48563		1636	Protein MON2 OS=Saccharom	yes	N/A	0.774	0.205	0.244	4e-15

>sp\|Q9VLT1\|MON2_DROME Protein MON2 homolog OS=Drosophila melanogaster GN=mon2 PE=2 SV=4	Back alignment and function desciption

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/408 (60%), Positives = 314/408 (76%), Gaps = 6/408 (1%)

Query: 12  KFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQG 71
           KF+++LQ D K LS+ETKKK+PQIKEACEE I KL    S+ Q+ ++  VNQILYP+VQG
Sbjct: 16  KFVEALQADFKTLSLETKKKYPQIKEACEEAISKLCTAGSSQQNSVYYTVNQILYPLVQG 75

Query: 72  CETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTT 131
           CETKD KIIK C+ MMQRLIT Q +DQKGA YIT+ LW LME+  EEVK+LQ+ TLLLTT
Sbjct: 76  CETKDLKIIKFCLGMMQRLITQQVVDQKGALYITNALWTLMENNIEEVKVLQTVTLLLTT 135

Query: 132 NSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFREEDHKP 191
           N+VVHG+ LAK LVLCFRLH+AK+ T +NTAGAT+R LVS VFERV LE D       + 
Sbjct: 136 NTVVHGDTLAKALVLCFRLHYAKNPTIVNTAGATIRQLVSLVFERVYLEKDSVSSLQQQQ 195

Query: 192 RNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELL 251
            + +  E +  +    + ++  A DA+L+FQDLVQLVN DQPYWL+GMTEMTRTFGLELL
Sbjct: 196 SSGSPAEGEGGN----QDVQTFASDAFLLFQDLVQLVNADQPYWLLGMTEMTRTFGLELL 251

Query: 252 ESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPY 311
           E++L N+ +VF++  +F  LLKERVCALVIKLFSPN+K+R     S+G++    P +KPY
Sbjct: 252 EAVLTNFSAVFHESNDFRLLLKERVCALVIKLFSPNVKHRQLPAPSNGNAP--VPAEKPY 309

Query: 312 FPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQT 371
           FPIS+RLLR+V+IL+QKYH +LVTECEIFLSLIIKFLDPDKP WQR+LALEV+HKL  ++
Sbjct: 310 FPISMRLLRLVAILIQKYHTILVTECEIFLSLIIKFLDPDKPAWQRALALEVIHKLVTRS 369

Query: 372 ELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNSSPSLSSSSCG 419
            L+  FC+SYDLK+H T+I  D++ ++ +Y+    +N+S  L+    G
Sbjct: 370 SLIAFFCKSYDLKNHATNIVHDMIAAMGSYIRYSLINASAMLNGQQNG 417

May be required for traffic between late Golgi and early endosomes.
Drosophila melanogaster (taxid: 7227)

>sp\|Q29L43\|MON2_DROPS Protein MON2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=mon2 PE=3 SV=2	Back alignment and function description

>sp\|Q6GP04\|MON2_XENLA Protein MON2 homolog OS=Xenopus laevis GN=mon2 PE=2 SV=1	Back alignment and function description

>sp\|Q80TL7\|MON2_MOUSE Protein MON2 homolog OS=Mus musculus GN=Mon2 PE=2 SV=2	Back alignment and function description

>sp\|Q7Z3U7\|MON2_HUMAN Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=2	Back alignment and function description

>sp\|Q19338\|MON2_CAEEL Monensin-resistant homolog 2 OS=Caenorhabditis elegans GN=mon-2 PE=3 SV=2	Back alignment and function description

>sp\|Q61SD1\|MON2_CAEBR Protein MON2 homolog OS=Caenorhabditis briggsae GN=CBG06228 PE=3 SV=1	Back alignment and function description

>sp\|Q09853\|MON2_SCHPO Protein MON2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mon2 PE=1 SV=1	Back alignment and function description

>sp\|P48563\|MON2_YEAST Protein MON2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MON2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		435
307199530		1649	Protein MON2-like protein [Harpegnathos	0.951	0.251	0.726	1e-178
383854686		1648	PREDICTED: protein MON2 homolog [Megachi	0.917	0.242	0.751	1e-177
340725015		1682	PREDICTED: protein MON2 homolog [Bombus	0.917	0.237	0.746	1e-176
350421961		1648	PREDICTED: protein MON2 homolog [Bombus	0.917	0.242	0.746	1e-176
332026317		1635	Protein MON2-like protein [Acromyrmex ec	0.917	0.244	0.741	1e-175
328786519		1648	PREDICTED: protein MON2 homolog [Apis me	0.917	0.242	0.746	1e-175
380028251		1647	PREDICTED: protein MON2 homolog [Apis fl	0.917	0.242	0.744	1e-175
345489985		1673	PREDICTED: protein MON2 homolog [Nasonia	0.940	0.244	0.724	1e-175
270014560		1631	hypothetical protein TcasGA2_TC004594 [T	0.958	0.255	0.682	1e-168
91076180		1627	PREDICTED: similar to SF21 [Tribolium ca	0.940	0.251	0.693	1e-168

>gi\|307199530\|gb\|EFN80131.1\| Protein MON2-like protein [Harpegnathos saltator]	Back alignment and taxonomy information

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 305/420 (72%), Positives = 350/420 (83%), Gaps = 6/420 (1%)

Query: 6   NPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQIL 65
           NPE + KFL++LQ+DLK L+ ETKKK+PQIKE+CEEGI KLR  SSNP + ++ V+NQIL
Sbjct: 9   NPENASKFLEALQSDLKVLASETKKKYPQIKESCEEGIAKLRAASSNPGTPIYYVINQIL 68

Query: 66  YPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSC 125
           YP+VQGCE+KD KIIK C+  MQRLIT QA+DQKGARYITDTLW+LMESGTEEVK+LQ+ 
Sbjct: 69  YPLVQGCESKDIKIIKFCLGTMQRLITQQAVDQKGARYITDTLWLLMESGTEEVKVLQTV 128

Query: 126 TLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFR 185
           TLLLT+N+VVHG+ LA+NLVLCFRLHF KD TTINTAGATVR LVS VFERV+ ED+Q  
Sbjct: 129 TLLLTSNAVVHGDTLARNLVLCFRLHFTKDCTTINTAGATVRQLVSLVFERVVAEDEQ-S 187

Query: 186 EEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRT 245
            +      +N EELK P+N  PKG+ PCA DAYLMFQDLVQLVN DQPYWLIG+TEMTRT
Sbjct: 188 PDQQDSDEVNLEELKIPTNQAPKGLGPCAADAYLMFQDLVQLVNADQPYWLIGITEMTRT 247

Query: 246 FGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNA 305
           FGLELLES+L N+ SVF+KHPEFSFLLKERVCALVIKLFSPNIKYRN   S   S QQ  
Sbjct: 248 FGLELLESVLTNFSSVFFKHPEFSFLLKERVCALVIKLFSPNIKYRN---SVPASLQQAT 304

Query: 306 PLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLH 365
           PLDKPYFPIS+RLLRVVSIL+QKYH LLVTECEIFLSLI+KFLDPDKP WQR+LALEVLH
Sbjct: 305 PLDKPYFPISMRLLRVVSILIQKYHSLLVTECEIFLSLIVKFLDPDKPTWQRALALEVLH 364

Query: 366 KLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLNSSPSLSSSSCGENQVPR 425
           K+ VQ +LL  FC+ YDLK H T+IFQDIVNSL  YVHS+F+N  P + S +     VP+
Sbjct: 365 KMTVQADLLTNFCECYDLKPHATNIFQDIVNSLGAYVHSLFVN--PQMMSQTATSTTVPQ 422

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383854686\|ref\|XP_003702851.1\| PREDICTED: protein MON2 homolog [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340725015\|ref\|XP_003400870.1\| PREDICTED: protein MON2 homolog [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350421961\|ref\|XP_003493013.1\| PREDICTED: protein MON2 homolog [Bombus impatiens]	Back alignment and taxonomy information

>gi\|332026317\|gb\|EGI66451.1\| Protein MON2-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|328786519\|ref\|XP_393240.4\| PREDICTED: protein MON2 homolog [Apis mellifera]	Back alignment and taxonomy information

>gi\|380028251\|ref\|XP_003697820.1\| PREDICTED: protein MON2 homolog [Apis florea]	Back alignment and taxonomy information

>gi\|345489985\|ref\|XP_001604189.2\| PREDICTED: protein MON2 homolog [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|270014560\|gb\|EFA11008.1\| hypothetical protein TcasGA2_TC004594 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|91076180\|ref\|XP_971781.1\| PREDICTED: similar to SF21 [Tribolium castaneum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		435
FB\|FBgn0031985		1684	mon2 [Drosophila melanogaster	0.898	0.232	0.589	1.7e-122
UNIPROTKB\|Q29L43		1701	mon2 "Protein MON2 homolog" [D	0.908	0.232	0.575	1.8e-122
MGI\|MGI:1914324		1715	Mon2 "MON2 homolog (yeast)" [M	0.908	0.230	0.518	1.6e-109
UNIPROTKB\|Q7Z3U7		1718	MON2 "Protein MON2 homolog" [H	0.917	0.232	0.504	2.6e-108
WB\|WBGene00008685		1646	mon-2 [Caenorhabditis elegans	0.896	0.236	0.401	2.5e-77
UNIPROTKB\|Q19338		1646	mon-2 "Monensin-resistant homo	0.896	0.236	0.401	2.5e-77
UNIPROTKB\|G4N2E3		1761	MGG_07913 "Uncharacterized pro	0.609	0.150	0.304	6.5e-35
DICTYBASE\|DDB_G0271398		1874	mon2 "unknown" [Dictyostelium	0.4	0.092	0.333	1.9e-27
UNIPROTKB\|Q7S5S4		1750	NCU05634 "Putative uncharacter	0.459	0.114	0.279	2.3e-22
UNIPROTKB\|Q9HFW1		1591	AEL204C "Ynl297c" [Eremotheciu	0.586	0.160	0.266	5.5e-19

FB\|FBgn0031985 mon2 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1206 (429.6 bits), Expect = 1.7e-122, P = 1.7e-122
 Identities = 234/397 (58%), Positives = 296/397 (74%)

Query:    12 KFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQG 71
             KF+++LQ D K LS+ETKKK+PQIKEACEE I KL    S+ Q+ ++  VNQILYP+VQG
Sbjct:    16 KFVEALQADFKTLSLETKKKYPQIKEACEEAISKLCTAGSSQQNSVYYTVNQILYPLVQG 75

Query:    72 CETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTT 131
             CETKD KIIK C+ MMQRLIT Q +DQKGA YIT+ LW LME+  EEVK+LQ+ TLLLTT
Sbjct:    76 CETKDLKIIKFCLGMMQRLITQQVVDQKGALYITNALWTLMENNIEEVKVLQTVTLLLTT 135

Query:   132 NSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFREEDHKP 191
             N+VVHG+ LAK LVLCFRLH+AK+ T +NTAGAT+R LVS VFERV LE D       + 
Sbjct:   136 NTVVHGDTLAKALVLCFRLHYAKNPTIVNTAGATIRQLVSLVFERVYLEKDSVSSLQQQQ 195

Query:   192 RNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELL 251
              + +  E +  +    + ++  A DA+L+FQDLVQLVN DQPYWL+GMTEMTRTFGLELL
Sbjct:   196 SSGSPAEGEGGN----QDVQTFASDAFLLFQDLVQLVNADQPYWLLGMTEMTRTFGLELL 251

Query:   252 ESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPY 311
             E++L N+ +VF++  +F  LLKERVCALVIKLFSPN+K+R     S+G++    P +KPY
Sbjct:   252 EAVLTNFSAVFHESNDFRLLLKERVCALVIKLFSPNVKHRQLPAPSNGNAP--VPAEKPY 309

Query:   312 FPXXXXXXXXXXXXXQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQT 371
             FP             QKYH +LVTECEIFLSLIIKFLDPDKP WQR+LALEV+HKL  ++
Sbjct:   310 FPISMRLLRLVAILIQKYHTILVTECEIFLSLIIKFLDPDKPAWQRALALEVIHKLVTRS 369

Query:   372 ELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFLN 408
              L+  FC+SYDLK+H T+I  D++ ++ +Y+    +N
Sbjct:   370 SLIAFFCKSYDLKNHATNIVHDMIAAMGSYIRYSLIN 406

GO:0031532 "actin cytoskeleton reorganization" evidence=IMP

GO:0005519 "cytoskeletal regulatory protein binding" evidence=IPI

GO:0007318 "pole plasm protein localization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

UNIPROTKB\|Q29L43 mon2 "Protein MON2 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

MGI\|MGI:1914324 Mon2 "MON2 homolog (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z3U7 MON2 "Protein MON2 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

WB\|WBGene00008685 mon-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q19338 mon-2 "Monensin-resistant homolog 2" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N2E3 MGG_07913 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0271398 mon2 "unknown" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7S5S4 NCU05634 "Putative uncharacterized protein" [Neurospora crassa OR74A (taxid:367110)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HFW1 AEL204C "Ynl297c" [Eremothecium gossypii (taxid:33169)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Z3U7	MON2_HUMAN	No assigned EC number	0.5058	0.9402	0.2380	yes	N/A
Q9VLT1	MON2_DROME	No assigned EC number	0.6029	0.9241	0.2387	yes	N/A
Q29L43	MON2_DROPS	No assigned EC number	0.5888	0.9333	0.2386	yes	N/A
Q80TL7	MON2_MOUSE	No assigned EC number	0.5302	0.9080	0.2303	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		435
pfam12783		166	pfam12783, Sec7_N, Guanine nucleotide exchange fac	3e-24
PLN03076		1780	PLN03076, PLN03076, ARF guanine nucleotide exchang	0.003

>gnl\|CDD\|221768 pfam12783, Sec7_N, Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

 Score = 98.0 bits (245), Expect = 3e-24
 Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 30/183 (16%)

Query: 216 DAYLMFQDLVQLVN----TDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKH-PEFSF 270
           DA+L+F+DL +L       ++    +   E ++   LEL+ESIL N+  VF    PE   
Sbjct: 7   DAFLVFRDLCKLSMKPLDEEEKPDFLSHEERSKLLSLELIESILENHGDVFLSSPPELLD 66

Query: 271 LLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYH 330
           L+++ +C  +++          N  SSS             FP+ VR LR+  +L+ K+ 
Sbjct: 67  LIRQYLCPSLLR----------NLSSSS-------------FPVFVRSLRIFLLLLSKFR 103

Query: 331 VLLVTECEIFLSLII-KFLDPDK-PVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTT 388
             L  E E+FLSL+I + L+ D  P WQ+ L LEVL +LC   +LL     +YD  + + 
Sbjct: 104 SHLKLEIEVFLSLLILRILESDNSPFWQKELVLEVLRRLCRDPQLLVEIYLNYDCDEDSK 163

Query: 389 HIF 391
           +IF
Sbjct: 164 NIF 166

The full-length Sec7 functions proximally in the secretory pathway as a protein binding scaffold for the coat protein complexes COPII-COPI. The COPII-COPI-protein switch is necessary for maturation of the vesicular-tubular cluster, VTC, intermediate compartments for Golgi compartment biogenesis. This N-terminal domain however does not appear to be binding either of the COP or the ARF. Length = 166

>gnl\|CDD\|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		435
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	100.0
KOG0929\|consensus		1514		100.0
KOG1848\|consensus		1610		100.0
PF12783		168	Sec7_N: Guanine nucleotide exchange factor in Golg	100.0
KOG0928\|consensus		1386		99.95
COG5307		1024	SEC7 domain proteins [General function prediction	98.26
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.27
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	85.98
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	81.88

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

Probab=100.00  E-value=1.9e-67  Score=608.86  Aligned_cols=375  Identities=23%  Similarity=0.350  Sum_probs=303.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HhccChhHHHHHHHHHHHhhcCCCCC----------------Cccch---------hch
Q psy10883          8 ELSLKFLDSLQNDLKNLSIE-TKKKFPQIKEACEEGILKLRNVSSNP----------------QSQMH---------MVV   61 (435)
Q Consensus         8 ~~~~~~~~~L~~dL~~L~~e-~krK~~~lk~a~e~al~~Lk~~~~~~----------------~~~l~---------~~~   61 (435)
                      +.-..+.+++.+.|++|++. ..|||+++|+||++|++.|+..+..+                ..|+.         .++
T Consensus         5 ~~~~~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (1780)
T PLN03076          5 EADSRLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAES   84 (1780)
T ss_pred             cccchhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCH
Confidence            33346788999999999974 67899999999999999999765431                11222         157


Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCc----------cchHHHHHHHHHHhcCChh--hHHHHHHHHHHH
Q psy10883         62 NQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQ----------KGARYITDTLWMLMESGTE--EVKILQSCTLLL  129 (435)
Q Consensus        62 ~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~----------~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lv  129 (435)
                      +.||.||++||+||++||+.+||+||||||+|++|++          ..++.++++||+|++.++|  ||||||+|+++|
T Consensus        85 ~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v  164 (1780)
T PLN03076         85 ELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAV  164 (1780)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999932          3367899999999987766  999999999999


Q ss_pred             hcC-CcccchHHHHHHHHHhhhc-ccCChHHHhhHHHHHHHHHHHHHhcccccccccc-------------c--C-----
Q psy10883        130 TTN-SVVHGEILAKNLVLCFRLH-FAKDSTTINTAGATVRHLVSHVFERVLLEDDQFR-------------E--E-----  187 (435)
Q Consensus       130 ts~-~~lhg~~L~~av~~C~~l~-~Sks~~v~~tA~ATL~Qiv~~VF~Rv~~~~~~~~-------------~--~-----  187 (435)
                      +++ +.+||+.|+++||+|||+| .||+++||+||+|||+|||+.||+||+.......             +  .     
T Consensus       165 ~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (1780)
T PLN03076        165 TSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSM  244 (1780)
T ss_pred             cCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccch
Confidence            996 8999999999999999988 8999999999999999999999999974321000             0  0     


Q ss_pred             ---------------C---CCCC-----------------------CCccc---c----cCCC-----------------
Q psy10883        188 ---------------D---HKPR-----------------------NINYE---E----LKTP-----------------  202 (435)
Q Consensus       188 ---------------~---~~~~-----------------------~~~~~---~----~~~~-----------------  202 (435)
                                     +   .++.                       .+.+.   .    .+.+                 
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (1780)
T PLN03076        245 TQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGE  324 (1780)
T ss_pred             hhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccccccccccccccccc
Confidence                           0   0000                       00000   0    0000                 


Q ss_pred             --CCCCC--CC-----CCcchhhHHHHHHHHHHHhCCCCcchh-hcc-cchhhHhHHHHHHHHHHcCCccccCChhHHHH
Q psy10883        203 --SNIPP--KG-----IRPCAGDAYLMFQDLVQLVNTDQPYWL-IGM-TEMTRTFGLELLESILINYPSVFYKHPEFSFL  271 (435)
Q Consensus       203 --~~~~~--~~-----~~~~~~DA~lvF~dLC~Ls~~~~~~~l-~~~-~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~l  271 (435)
                        +++.+  ..     .+.+.+|||+|||.||+|+.++.|..- .+. ..++|++|||||..+|+++|++|.+|+.|+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~  404 (1780)
T PLN03076        325 LADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGA  404 (1780)
T ss_pred             cccccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHH
Confidence              00000  00     134789999999999999988655321 122 34799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhhCC
Q psy10883        272 LKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLI-IKFLDP  350 (435)
Q Consensus       272 lk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l-~~~Le~  350 (435)
                      ||+|||.+|+||.         .    |+       .+++|.++   ++|||.|+.+||.+||.||||||+.+ +++||+
T Consensus       405 ik~~Lc~sL~~n~---------~----S~-------~~~vf~ls---l~If~~L~~~~R~~LK~eievF~~~I~l~ile~  461 (1780)
T PLN03076        405 IKQYLCLSLLKNS---------A----SS-------LMIIFQLS---CSIFISLVSRFRAGLKAEIGVFFPMIVLRVLEN  461 (1780)
T ss_pred             HHHHHHHHHHHHh---------c----CC-------CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999975         2    23       46788876   56999999999999999999999865 699987


Q ss_pred             C-C-ChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhhh
Q psy10883        351 D-K-PVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSV  405 (435)
Q Consensus       351 ~-~-~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~~~nIfe~lv~~Lsk~~q~~  405 (435)
                      . + ++.||+++||+|.+||+||++++|||+|||||.++.||||+|++.|+|++|+.
T Consensus       462 ~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~  518 (1780)
T PLN03076        462 VAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGV  518 (1780)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCC
Confidence            4 3 48999999999999999999999999999999999999999999999999963

>KOG0929\|consensus	Back alignment and domain information

>KOG1848\|consensus	Back alignment and domain information

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

>KOG0928\|consensus	Back alignment and domain information

>COG5307 SEC7 domain proteins [General function prediction only]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		435
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 63/444 (14%), Positives = 130/444 (29%), Gaps = 116/444 (26%)

Query: 1   MGARQNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMV 60
           +    +PE  L+ L  L   +             IK        +LR +  +   +  ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 61  VNQILYPVVQGCETKDQKIIKM----CISMMQRLITNQAIDQKGARYITDTLWMLMESGT 116
              +L  V      ++ K        C    + L+T +         +TD    L  + T
Sbjct: 249 ---VLLNV------QNAKAWNAFNLSC----KILLTTRFKQ------VTDF---LSAATT 286

Query: 117 EEVKILQSCTLLLTTNSVVHGEILAKNL-VLCFRL-HFAKDST--TINTAGATVRHLVSH 172
             + +      L          +L K L      L      +    ++    ++R  ++ 
Sbjct: 287 THISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 173 VFERVLLEDDQFREEDHKPRNINYEELKTP-----SNIPPKGIRPCAGDAYLMFQDLVQL 227
                    D +       +++N ++L T      + + P   R         F  L   
Sbjct: 344 W--------DNW-------KHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLSVF 381

Query: 228 -VNTDQP------YWLIGMTEMTRTFGLELLESILIN---YPSVFYKHPEFSFLLK---E 274
             +   P       W   +         +L +  L+      S           LK   E
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLE 440

Query: 275 RVCAL---VIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHV 331
              AL   ++  ++    + ++ L           LD+ YF          S +   +H+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPP-------YLDQ-YF---------YSHIG--HHL 481

Query: 332 LLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSY----DLKDHT 387
             +   E      + FLD     +     LE   K+   +    A          LK + 
Sbjct: 482 KNIEHPERMTLFRMVFLDFR---F-----LEQ--KIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 388 THI------FQDIVNSLATYVHSV 405
            +I      ++ +VN++  ++  +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKI 555

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		435
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.8
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	87.66
1qgr_A		876	Protein (importin beta subunit); transport recepto	85.4
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	85.19
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	81.01

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

Probab=92.80  E-value=5.5  Score=36.19  Aligned_cols=139  Identities=6%  Similarity=0.053  Sum_probs=100.7

Q ss_pred             hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHH
Q psy10883         29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTL  108 (435)
Q Consensus        29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l  108 (435)
                      +.+|+.+++++=.++..|-..-..   ........++.+++-.+..+++.+-..|..++..++..-     .++.+++.+
T Consensus        67 kd~~~~V~~~a~~~l~~la~~l~~---~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l  138 (242)
T 2qk2_A           67 KDSNVVLVAMAGKCLALLAKGLAK---RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----SLEAQQESI  138 (242)
T ss_dssp             HCSCHHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Confidence            457888988888887666543211   122235678899999999999999999999999998743     356777777


Q ss_pred             HHHhcCCh-h-hHHHHHHHHHHHhcC-C-cccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHHHHHHh
Q psy10883        109 WMLMESGT-E-EVKILQSCTLLLTTN-S-VVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFE  175 (435)
Q Consensus       109 ~~~~e~~~-e-qLkILQ~Ll~lvts~-~-~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~VF~  175 (435)
                      ...++... . +..++..+..++... . ......+-.++-....+...+++.++..|..++..+...|=+
T Consensus       139 ~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          139 VESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence            66665432 2 778888888877763 2 244566666777777666667788999999999999877743

PyMOL of 2qk2

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		435
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	86.5
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	84.26

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.50  E-value=20  Score=36.96  Aligned_cols=133  Identities=10%  Similarity=0.087  Sum_probs=79.0

Q ss_pred             ccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCc-------CCccchH
Q psy10883         30 KKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQA-------IDQKGAR  102 (435)
Q Consensus        30 rK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~-------i~~~~~~  102 (435)
                      -+|++||+++=+++..+-..-+.      .....++..+.-...+++.+....+-.++..++..-.       +.....+
T Consensus        56 D~~~~Vq~~A~k~l~~l~~~~~~------~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~  129 (1207)
T d1u6gc_          56 DKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK  129 (1207)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCcH------hhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            47888888888887776443221      1335666666666777888888888888877765422       1222345


Q ss_pred             HHHHHHHHHhcCCh--h-hHHHHHHHHHHHhcC-CcccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHH
Q psy10883        103 YITDTLWMLMESGT--E-EVKILQSCTLLLTTN-SVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHL  169 (435)
Q Consensus       103 ~iv~~l~~~~e~~~--e-qLkILQ~Ll~lvts~-~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qi  169 (435)
                      .++..+........  . +...+.++..++... ..+.. ....++........+.++.++..|..++..+
T Consensus       130 ~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l  199 (1207)
T d1u6gc_         130 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHL  199 (1207)
T ss_dssp             HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            55666655544322  2 556666666666652 22221 1233444444444556677888888777766

PyMOL of d1u6gc_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure