Psyllid ID: psy10887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Secondary Structure (PSIPRED)
cccccccccccEEcccEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEEEccccEEcccccEEEEEEEcccccEEEEEEEEEccccccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHcccccEEEEccccccccEEEEEccHHHHccccccccccccccccccccHHHHHcHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccEEEEEEEEcccccEccccEEEEEEEccccccEEEEEEEEcccccccccccHHcEccHHHHHHHHccHHHHccc
Coil and Loop (DISEMBL)
mkygfpsldslrsfdDFVLSYDRRNRTAYWVFEHLTKENTAYSEAvnrskseffeddsiheyfrgrnsdykysgydrghlaaagnhkanqkhldqtfvlsnispqvgagfnrDKWAELEKHSRKLlkqypnvyvctgplylpmkspngkkyvnyevigdsnvavpTHFFKIIVAENENGKLVMENYvlpnavisdstpltSFMVSTYLLKCSYIINLLIMFQ
Flexible Loop (DISEMBL)
mkygfpsldslrsfDDFVLSYDRRNRTAYWVFEhltkentayseavnrskseffeddsihEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSrkllkqypnvYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Low Complexity Region (SEG)
MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Disordered region (IsUnstruct)
**********LRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAV******FFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF*
Disordered Region (DISOPRED)
MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAY*E*VNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Disordered Region (DISEMBL)
MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Disordered Region (DISPRO)
*KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q95NM6	308	Endonuclease G, mitochond	yes	N/A	0.918	0.662	0.553	7e-65
O08600	294	Endonuclease G, mitochond	yes	N/A	0.900	0.680	0.502	8e-57
P38447	299	Endonuclease G, mitochond	yes	N/A	0.900	0.668	0.507	1e-56
Q14249	297	Endonuclease G, mitochond	yes	N/A	0.900	0.673	0.502	2e-56
P08466	329	Mitochondrial nuclease OS	yes	N/A	0.972	0.656	0.488	3e-49
P81203	252	Nuclease C1 OS=Cunningham	N/A	N/A	0.905	0.797	0.463	2e-47
P81204	320	Nuclease OS=Syncephalastr	N/A	N/A	0.918	0.637	0.450	1e-45
Q10480	322	Nuclease 1, mitochondrial	yes	N/A	0.972	0.670	0.409	1e-40
Q502K1	343	Nuclease EXOG, mitochondr	no	N/A	0.891	0.577	0.4	2e-35
Q9Y2C4	368	Nuclease EXOG, mitochondr	no	N/A	0.905	0.546	0.384	8e-34

>sp|Q95NM6|NUCG_CAEEL Endonuclease G, mitochondrial OS=Caenorhabditis elegans GN=cps-6 PE=1 SV=1

 Score =  246 bits (629), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 151/204 (74%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+G+P   ++R+++DFVLSYD + RTA+WV EHLT E   ++E V+R   EF  D +  
Sbjct: 70  MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFP 129

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
           + F  +N+DYK SG+DRGHLAAAGNH+ +Q  +DQTF LSN+SPQVG GFNRDKW +LE 
Sbjct: 130 QKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEM 189

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H R++ K+  N Y+ TGPLYLP    +GKKY+ Y+VIGD+NVAVPTHFFK+ + E   GK
Sbjct: 190 HCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGK 249

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
             +E+Y+LPNAVI D+  ++ F V
Sbjct: 250 FELESYILPNAVIEDTVEISKFHV 273

Endonuclease important for programmed cell death; it mediates apoptotic DNA fragmentation.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 1EC: .EC: 3EC: 0EC: .EC: -

>sp|O08600|NUCG_MOUSE Endonuclease G, mitochondrial OS=Mus musculus GN=Endog PE=2 SV=1

 Score =  219 bits (559), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 139/203 (68%), Gaps = 3/203 (1%)

Query: 2   KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
           KYG P +  LRS + +VLSYD R R A WV E L  E        +RS  +F EDDS+H 
Sbjct: 63  KYGLPGVAQLRSRESYVLSYDPRTRGALWVLEQLRPERLRGDG--DRSACDFREDDSVHA 120

Query: 62  YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
           Y R  N+DY+ SG+DRGHLAAA NH+ +Q+ +D TF LSN++PQV    N++ W  LE++
Sbjct: 121 YHRATNADYRGSGFDRGHLAAAANHRWSQRAMDDTFYLSNVAPQV-PHLNQNAWNNLERY 179

Query: 122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
           SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct: 180 SRSLTRTYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 239

Query: 182 VMENYVLPNAVISDSTPLTSFMV 204
            + +YV+PNA + ++ PL  F+V
Sbjct: 240 ELRSYVMPNAPVDETIPLERFLV 262

Cleaves DNA at double-stranded (DG)n.(DC)n and at single-stranded (DC)n tracts. In addition to deoxyribonuclease activities, also has ribonuclease (RNase) and RNase H activities. Capable of generating the RNA primers required by DNA polymerase gamma to initiate replication of mitochondrial DNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|P38447|NUCG_BOVIN Endonuclease G, mitochondrial OS=Bos taurus GN=ENDOG PE=1 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 137/203 (67%), Gaps = 3/203 (1%)

Query: 2   KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
           KYG P +  L+S   +VL YD R R A WV E L  E        NRS  +F EDDS+H 
Sbjct: 68  KYGLPGVAQLKSRASYVLCYDPRTRGALWVVEQLRPEGLRGDG--NRSSCDFHEDDSVHA 125

Query: 62  YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
           Y R  N+DY+ SG+DRGHLAAA NH+ +QK +D TF LSN++PQV    N++ W  LEK+
Sbjct: 126 YHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQV-PHLNQNAWNNLEKY 184

Query: 122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
           SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct: 185 SRSLTRTYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 244

Query: 182 VMENYVLPNAVISDSTPLTSFMV 204
            + +YV+PNA + ++ PL  F+V
Sbjct: 245 ELRSYVMPNAPVDEAIPLEHFLV 267

Cleaves DNA at double-stranded (DG)n.(DC)n and at single-stranded (DC)n tracts. In addition to deoxyribonuclease activities, also has ribonuclease (RNase) and RNase H activities. Capable of generating the RNA primers required by DNA polymerase gamma to initiate replication of mitochondrial DNA.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|Q14249|NUCG_HUMAN Endonuclease G, mitochondrial OS=Homo sapiens GN=ENDOG PE=1 SV=4

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 137/203 (67%), Gaps = 3/203 (1%)

Query: 2   KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
           KYG P L  L+S + +VL YD R R A WV E L  E        +R + +F EDDS+H 
Sbjct: 66  KYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDG--DRRECDFREDDSVHA 123

Query: 62  YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
           Y R  N+DY+ SG+DRGHLAAA NH+ +QK +D TF LSN++PQV    N++ W  LEK+
Sbjct: 124 YHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQV-PHLNQNAWNNLEKY 182

Query: 122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
           SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct: 183 SRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 242

Query: 182 VMENYVLPNAVISDSTPLTSFMV 204
            +  YV+PNA + ++ PL  F+V
Sbjct: 243 ELRTYVMPNAPVDEAIPLERFLV 265

Cleaves DNA at double-stranded (DG)n.(DC)n and at single-stranded (DC)n tracts. In addition to deoxyribonuclease activities, also has ribonuclease (RNase) and RNase H activities. Capable of generating the RNA primers required by DNA polymerase gamma to initiate replication of mitochondrial DNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|P08466|NUC1_YEAST Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/225 (48%), Positives = 142/225 (63%), Gaps = 9/225 (4%)

Query: 2   KYGFPS-LDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           KYGFP  +  L++ ++F+  Y+R+ +  YWV EH+T E+ A   A +R  S F ED+ I 
Sbjct: 61  KYGFPGPIHDLQNREEFISCYNRQTQNPYWVLEHITPESLAARNA-DRKNSFFKEDEVIP 119

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
           E FRG+  DY  SGYDRGH A A + K +Q+ +D TF LSN+ PQVG GFNRD WA LE 
Sbjct: 120 EKFRGKLRDYFRSGYDRGHQAPAADAKFSQQAMDDTFYLSNMCPQVGEGFNRDYWAHLEY 179

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKY-VNYEVIGD-SNVAVPTHFFKIIVAENEN 178
             R L K+Y +V + TGPLYLP K P   K+ VNYEVIG+  ++AVPTHFFK+IVAE   
Sbjct: 180 FCRGLTKKYKSVRIVTGPLYLPKKDPIDNKFRVNYEVIGNPPSIAVPTHFFKLIVAEAPT 239

Query: 179 GKLVMEN-----YVLPNAVISDSTPLTSFMVSTYLLKCSYIINLL 218
                E+     +VLPN  IS+ T LT F V    L+ S  + LL
Sbjct: 240 ANPAREDIAVAAFVLPNEPISNETKLTDFEVPIDALERSTGLELL 284

This enzyme has both RNase and DNase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|P81203|NUC1_CUNEE Nuclease C1 OS=Cunninghamella echinulata var. echinulata GN=NUC1CE PE=1 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 6/207 (2%)

Query: 1   MKYGFPSLDSLRSF---DDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDD 57
           +++G P   + R F   + +V+SY+RR+R A W  EHLT ++    + V+R  S+F ED 
Sbjct: 8   LQFGDPG--TARDFLERESYVISYNRRDRVASWTGEHLTADSLKTGDGVDRDHSKFKEDP 65

Query: 58  SIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAE 117
            +   FR   +DY  SG+DRGH+A AG+  A Q  +DQTF LSN+SPQVG GFNR  WA 
Sbjct: 66  DVPSLFRSTLADYSGSGFDRGHMAPAGDAVATQPAMDQTFYLSNMSPQVGIGFNRHYWAY 125

Query: 118 LEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENE 177
           LE   R L K++ +VYV TGPL+LP K  +GK  V Y V+   NVAVPTHF+K+I+    
Sbjct: 126 LEGFCRSLTKKFSDVYVFTGPLFLPTKGSDGKYTVTYNVL-QGNVAVPTHFYKVILVPQG 184

Query: 178 NGKLVMENYVLPNAVISDSTPLTSFMV 204
           + K     ++LPN  I   TPLT+F V
Sbjct: 185 DNKYAYGAFILPNQAIDTKTPLTNFKV 211

This enzyme has both RNase and DNase activity.

Cunninghamella echinulata var. echinulata (taxid: 76406)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|P81204|NUC1_SYNRA Nuclease OS=Syncephalastrum racemosum PE=1 SV=1

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 129/211 (61%), Gaps = 7/211 (3%)

Query: 1   MKYGFPS-LDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSI 59
           +K G P  +  L     ++LSY+RR+R A+WV EHLT  +    + V+R KS F ED  I
Sbjct: 76  LKLGNPGPVSDLLERSGYILSYNRRDRLAHWVGEHLTSASLQAGQGVDRDKSNFQEDTDI 135

Query: 60  HEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
            E FR    DY  SGYDRGH A A +  ++Q+ +D+TF+LSN++PQVG GFNR  WA LE
Sbjct: 136 PEMFRAHLKDYVSSGYDRGHQAPAADDLSSQEAMDETFLLSNMAPQVGVGFNRHYWAYLE 195

Query: 120 KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKK----YVNYEVIGDS--NVAVPTHFFKIIV 173
              R L + + +VYV TGPL+LP  +  G+K     + Y  +G +  NV VPTHFFKI +
Sbjct: 196 GFMRDLTQNFTDVYVYTGPLFLPSAASTGRKNPAYSIEYPFLGATTPNVPVPTHFFKIAL 255

Query: 174 AENENGKLVMENYVLPNAVISDSTPLTSFMV 204
               + +  +  +VLPN  I  STPLT+F V
Sbjct: 256 TTTASSEYALGAFVLPNQAIDSSTPLTNFKV 286

This enzyme has both RNase and DNase activity.

Syncephalastrum racemosum (taxid: 13706)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|Q10480|PNU1_SCHPO Nuclease 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnu1 PE=2 SV=2

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 6/222 (2%)

Query: 2   KYGFPS-LDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           +YG P  +   R    ++  +DRR R  ++  E +T+E+    +  NR  SEF  DD+I 
Sbjct: 65  QYGIPGPVADQRVNHGYMSVFDRRTRNPFYTAETITQESLNQRKG-NRRYSEFVPDDNIP 123

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
           E F+ +  DY+ SGYDRGH   A + K +Q+ +++TF LSN+ PQVG GFNR+ WA  E 
Sbjct: 124 EMFQAKLGDYRGSGYDRGHQVPAADCKFSQEAMNETFYLSNMCPQVGDGFNRNYWAYFED 183

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGD-SNVAVPTHFFKIIVAENEN- 178
             R+L  +Y +V + TGPLYLP K+  G+  V Y VIG+  NVAVPTHFFK+I+AE    
Sbjct: 184 WCRRLTSKYGSVTIMTGPLYLPKKNERGQWEVQYRVIGNPPNVAVPTHFFKVIIAEKSGE 243

Query: 179 --GKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLL 218
                 +  +VLPN  I+D+ PL +F V   +++ +  + +L
Sbjct: 244 PTSSPSVAAFVLPNKPIADNFPLKNFAVPVEVVERASGLEIL 285

This enzyme has both RNase and DNase activity. It degrades single-stranded DNA and RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|Q502K1|EXOG_DANRE Nuclease EXOG, mitochondrial OS=Danio rerio GN=exog PE=2 SV=2

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 127/210 (60%), Gaps = 12/210 (5%)

Query: 2   KYGFP-SLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           ++G P S    R + + VLSYD+ +RT  WV EHL+  +T      NR + +F  D S+ 
Sbjct: 45  RFGLPESGAESRFYTNHVLSYDQTHRTPRWVAEHLS--STRLLGEANRKQCKFRPDPSVP 102

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQV---GAGFNRDKWAE 117
           E F   N DY  SG+ RGH+A AG++K++++ + +TF LSNI PQ     AGF    W  
Sbjct: 103 ELFTAHNEDYLKSGWSRGHMAPAGDNKSSEQAMAETFYLSNIVPQNYENNAGF----WNR 158

Query: 118 LEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENE 177
           LE + R+L +++ +V+V +GPL  P  + +GKK V+Y++IG   VAVPTH +K+I+A+ +
Sbjct: 159 LEMYCRELTEKFSDVWVVSGPLMKPQITDDGKKTVSYQLIGKDEVAVPTHLYKVILAQKD 218

Query: 178 --NGKLVMENYVLPNAVISDSTPLTSFMVS 205
             +  L +  +V+PNA I     L  F VS
Sbjct: 219 PSSDALAVGAFVVPNAPIGFQHQLQEFQVS 248

Endo/exonuclease with nicking activity towards supercoiled DNA, a preference for single stranded DNA and 5'-3' exonuclease activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

>sp|Q9Y2C4|EXOG_HUMAN Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 7/208 (3%)

Query: 2   KYGFP-SLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           ++GFP +    R + +  LSYD+  R   WV EH++K         +R   +F  D +I 
Sbjct: 64  QFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGD--ADRKHCKFKPDPNIP 121

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
             F   N DY  SG+ RGH+A AGN+K + K + +TF LSNI PQ     N   W  +E 
Sbjct: 122 PTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQ-DFDNNSGYWNRIEM 180

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENEN-- 178
           + R+L +++ +V+V +GPL LP    +GKK V+Y+VIG+ NVAVP+H +K+I+A   +  
Sbjct: 181 YCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVS 240

Query: 179 -GKLVMENYVLPNAVISDSTPLTSFMVS 205
              L +  +V+PN  I     LT F VS
Sbjct: 241 TEPLALGAFVVPNEAIGFQPQLTEFQVS 268

Endo/exonuclease with nicking activity towards supercoiled DNA, a preference for single stranded DNA and 5'-3' exonuclease activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
242008800	327	endonuclease G, putative [Pediculus huma	0.918	0.623	0.700	5e-80
312374613	322	hypothetical protein AND_15734 [Anophele	0.918	0.633	0.666	1e-79
307211377	623	Endonuclease G, mitochondrial [Harpegnat	0.918	0.327	0.666	1e-78
307178219	327	Endonuclease G, mitochondrial [Camponotu	0.918	0.623	0.666	9e-78
270000826	304	hypothetical protein TcasGA2_TC011076 [T	0.918	0.671	0.656	1e-77
170060498	324	endonuclease G, mitochondrial [Culex qui	0.918	0.629	0.647	1e-77
157123664	330	hypothetical protein AaeL_AAEL009589 [Ae	0.918	0.618	0.656	2e-77
157126291	330	hypothetical protein AaeL_AAEL002064 [Ae	0.918	0.618	0.656	2e-77
332020654	320	Endonuclease G, mitochondrial [Acromyrme	0.918	0.637	0.651	3e-77
380013825	324	PREDICTED: endonuclease G, mitochondrial	0.918	0.629	0.666	9e-77

>gi|242008800|ref|XP_002425187.1| endonuclease G, putative [Pediculus humanus corporis] gi|212508895|gb|EEB12449.1| endonuclease G, putative [Pediculus humanus corporis]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 162/204 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+GFPSLD++RSFDDFVLSYDRRNR A WVFEHLTKE   ++  V+RSK EFFED+SIH
Sbjct: 90  MKFGFPSLDNVRSFDDFVLSYDRRNRVANWVFEHLTKETVKFNPDVDRSKCEFFEDNSIH 149

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            YFR +NSDYK SG+DRGHLAAAGNHK NQK  +QTFVLSN++PQVG GFNRD W +LEK
Sbjct: 150 PYFRSKNSDYKNSGFDRGHLAAAGNHKWNQKQCEQTFVLSNMAPQVGHGFNRDYWNKLEK 209

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H RKL K+Y NVYVCTGPLYLP K  +GK YV Y+VIG + VAVPTHFFKI V E  +  
Sbjct: 210 HVRKLTKKYSNVYVCTGPLYLPKKEADGKNYVKYQVIGANTVAVPTHFFKIAVMETSDSN 269

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
             ME YVLPN  I DS PL +F V
Sbjct: 270 FEMEAYVLPNDKIDDSIPLNNFQV 293

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374613|gb|EFR22130.1| hypothetical protein AND_15734 [Anopheles darlingi]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 167/204 (81%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD++RSFDD+VLSYDRR R A+WVFEH+T ++   ++AV+R+KS+F  D+S+H
Sbjct: 89  MKYGFPGLDNIRSFDDYVLSYDRRTRVAHWVFEHMTPDSVRPNDAVDRAKSDFKPDESVH 148

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  NSDYK SG+DRGHLAAAGNH++ QKH DQTF LSN++PQVGAGFNRDKW  LE+
Sbjct: 149 PFFRSLNSDYKGSGFDRGHLAAAGNHRSEQKHCDQTFFLSNMAPQVGAGFNRDKWNHLER 208

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + RKL K +PNVY CTGPLYLP K  +GK YV Y+VIG SNVAVPTHF+K++V E +NG+
Sbjct: 209 YVRKLTKDHPNVYCCTGPLYLPRKEADGKLYVRYQVIGASNVAVPTHFYKVVVMETKNGQ 268

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME YVLPN  I D+TPLT F V
Sbjct: 269 LEMEAYVLPNQKIDDATPLTMFQV 292

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211377|gb|EFN87504.1| Endonuclease G, mitochondrial [Harpegnathos saltator]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 163/204 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+GFP LD +RS++DFVLSYDRRN+ A+WVFEHLTKE   +++AV+R K EF  D SIH
Sbjct: 387 MKFGFPGLDHVRSYEDFVLSYDRRNKVAHWVFEHLTKERLRHNDAVDRLKCEFKPDQSIH 446

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  N+DYK SGYDRGHLAAAGNHK  QKH++QTF+LSN++PQVG GFNRD W  LEK
Sbjct: 447 PFFRSENADYKGSGYDRGHLAAAGNHKVEQKHMEQTFLLSNMAPQVGVGFNRDSWNRLEK 506

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H RKL   Y +VYVCTGPLYLP K  +GKKYV YEVIG +NVAVPTHF+K+IV E  +GK
Sbjct: 507 HVRKLTNIYKDVYVCTGPLYLPKKEADGKKYVRYEVIGVNNVAVPTHFYKVIVGETSDGK 566

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME +V+PN  I D+TPL +F V
Sbjct: 567 LEMETFVMPNTPIDDNTPLANFQV 590

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178219|gb|EFN67004.1| Endonuclease G, mitochondrial [Camponotus floridanus]

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 160/204 (78%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+GFP LD +RS++DFVLSYDRRN+ A+WVFEHLTKE       V+RSK EF  D SIH
Sbjct: 91  MKFGFPGLDHIRSYEDFVLSYDRRNKVAHWVFEHLTKERLQCKNEVDRSKCEFKPDQSIH 150

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  N+DYK SGYDRGHLAAAGNHK  Q H++QTF LSN++PQVG GFNRD W  LEK
Sbjct: 151 PFFRSDNTDYKGSGYDRGHLAAAGNHKMEQNHMEQTFFLSNMAPQVGVGFNRDSWNRLEK 210

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H RKL   Y +VYVCTGPLYLP K P+GKKYV YEVIG ++VAVPTHF+K+IV E  +GK
Sbjct: 211 HVRKLTNVYKDVYVCTGPLYLPKKEPDGKKYVRYEVIGVNHVAVPTHFYKVIVGETNDGK 270

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME +V+PNA I D+ PLT+F V
Sbjct: 271 LDMEAFVMPNAPIDDNAPLTNFQV 294

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270000826|gb|EEZ97273.1| hypothetical protein TcasGA2_TC011076 [Tribolium castaneum]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 163/204 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD++RSFD++VLSYD+RNR A+WVFEH+T E+   +E V+RS  +F  D+SIH
Sbjct: 71  MKYGFPGLDNIRSFDNYVLSYDKRNRVAHWVFEHITAESIKPNEGVDRSLCQFMPDESIH 130

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            YFR  NSDY  SGYDRGHLAAAGNHK +QK ++QTF LSN++PQVG GFNRD W +LE+
Sbjct: 131 PYFRSLNSDYLKSGYDRGHLAAAGNHKCSQKLVEQTFYLSNMAPQVGVGFNRDAWNKLER 190

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + RKL K Y NVY CTGPLYLP + P+GK YV YEVIG ++VAVPTHFFK++V E  +GK
Sbjct: 191 YVRKLTKTYTNVYCCTGPLYLPRREPDGKNYVKYEVIGANHVAVPTHFFKVVVCETSDGK 250

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
             ME+YV+PN  ISD TPLTSF V
Sbjct: 251 FEMESYVMPNQAISDETPLTSFRV 274

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170060498|ref|XP_001865830.1| endonuclease G, mitochondrial [Culex quinquefasciatus] gi|167878944|gb|EDS42327.1| endonuclease G, mitochondrial [Culex quinquefasciatus]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 161/204 (78%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD++RS+DD+VLSYDRR R A+WVFEHLT E    S+ V+R+KS+F  D+S+H
Sbjct: 91  MKYGFPGLDNVRSYDDYVLSYDRRTRVAHWVFEHLTAEGVKASQGVDRAKSDFKPDESVH 150

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  N+DYK SG+DRGHLAAAGNH++ QKH DQTF L+N++PQVG GFNRDKW  LE+
Sbjct: 151 PFFRSLNTDYKGSGFDRGHLAAAGNHRSEQKHCDQTFFLTNMAPQVGVGFNRDKWNHLER 210

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + RKL K YPNVY CTGPLYLP K  +GK YV Y+VIG +NVAVPTHF+K++V E  + +
Sbjct: 211 YVRKLTKDYPNVYCCTGPLYLPRKEADGKLYVRYQVIGANNVAVPTHFYKVVVMETRDNR 270

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME YVLPN  I D TPLT F V
Sbjct: 271 LEMEAYVLPNQKIDDETPLTMFQV 294

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123664|ref|XP_001660269.1| hypothetical protein AaeL_AAEL009589 [Aedes aegypti] gi|108874309|gb|EAT38534.1| AAEL009589-PA [Aedes aegypti]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 163/204 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD++RS+DD+VLSYDRR R A+WVFEHLT E+   ++AV+R+K +F  D+SIH
Sbjct: 97  MKYGFPGLDNVRSYDDYVLSYDRRTRVAHWVFEHLTAESVKANDAVDRAKCDFKADESIH 156

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  NSDYK SG+DRGHLAAAGNH+ +Q+H DQTF L+N++PQVG GFNRDKW  LE+
Sbjct: 157 PFFRSLNSDYKGSGFDRGHLAAAGNHRLHQQHCDQTFFLTNMAPQVGVGFNRDKWNHLER 216

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + RKL KQY NVY CTGPLYLP K  +GK YV Y+VIG SNVAVPTHF+K++V E+ + K
Sbjct: 217 YVRKLTKQYQNVYCCTGPLYLPRKEADGKLYVKYQVIGASNVAVPTHFYKVVVMESADHK 276

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME YVLPN  I D TPLT F V
Sbjct: 277 LEMEAYVLPNQKIDDETPLTMFQV 300

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126291|ref|XP_001654578.1| hypothetical protein AaeL_AAEL002064 [Aedes aegypti] gi|108882550|gb|EAT46775.1| AAEL002064-PA [Aedes aegypti]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 163/204 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD++RS+DD+VLSYDRR R A+WVFEHLT E+   ++AV+R+K +F  D+SIH
Sbjct: 97  MKYGFPGLDNVRSYDDYVLSYDRRTRVAHWVFEHLTAESVKANDAVDRAKCDFKADESIH 156

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  NSDYK SG+DRGHLAAAGNH+ +Q+H DQTF L+N++PQVG GFNRDKW  LE+
Sbjct: 157 PFFRSLNSDYKGSGFDRGHLAAAGNHRLHQQHCDQTFFLTNMAPQVGVGFNRDKWNHLER 216

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + RKL KQY NVY CTGPLYLP K  +GK YV Y+VIG SNVAVPTHF+K++V E+ + K
Sbjct: 217 YVRKLTKQYQNVYCCTGPLYLPRKEADGKLYVKYQVIGASNVAVPTHFYKVVVMESADHK 276

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME YVLPN  I D TPLT F V
Sbjct: 277 LEMEAYVLPNQKIDDDTPLTMFQV 300

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020654|gb|EGI61060.1| Endonuclease G, mitochondrial [Acromyrmex echinatior]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 133/204 (65%), Positives = 163/204 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+GFP LD +RS++DFVLSYDRRNR A+WVFEHLTKE   Y+  V+RSK EF  D+SIH
Sbjct: 86  MKFGFPGLDHVRSYEDFVLSYDRRNRVAHWVFEHLTKERLQYNTEVDRSKCEFKPDESIH 145

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR +N DYK SGYDRGHLAAAGNHK +QKH++QTF L+N++PQ+G GFNRD W  LEK
Sbjct: 146 PFFRSQNIDYKGSGYDRGHLAAAGNHKVDQKHMEQTFFLTNMAPQIGKGFNRDSWNRLEK 205

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + RKL   Y +VYVCTGPLYLP +  +GKKYV YEVIG ++VAVPTHF+K+IV E  +GK
Sbjct: 206 YVRKLTNIYKDVYVCTGPLYLPKREADGKKYVRYEVIGSNHVAVPTHFYKVIVGETSDGK 265

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME +V+PN  I D+ PLT+F V
Sbjct: 266 LEMEAFVMPNTPIDDNAPLTNFQV 289

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013825|ref|XP_003690946.1| PREDICTED: endonuclease G, mitochondrial-like [Apis florea]

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 159/204 (77%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD +RS++DFVLSYDRRNR A+WVFEHL KE    ++ ++RSK EF  D SIH
Sbjct: 89  MKYGFPGLDHVRSYEDFVLSYDRRNRVAHWVFEHLNKEKLQANQEISRSKCEFKSDPSIH 148

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR  N+DYK SGYDRGHLAAAGNHK  QKH+D+TF LSNISPQVG GFNRD W  LEK
Sbjct: 149 PFFRAENNDYKGSGYDRGHLAAAGNHKCAQKHIDETFFLSNISPQVGVGFNRDSWNRLEK 208

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           + R L K Y +VYVCTGPLYLP    NGKKYV YEVIG ++VAVPTHF+KI+V E  + K
Sbjct: 209 YVRHLTKIYKDVYVCTGPLYLPKIEANGKKYVRYEVIGTNHVAVPTHFYKIVVGETHDSK 268

Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME +V+PN  I D+TPLT+F V
Sbjct: 269 LEMEAFVMPNTPIDDNTPLTNFQV 292

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
FB|FBgn0033690	310	EndoG "Endonuclease G" [Drosop	0.918	0.658	0.642	4.1e-72
WB|WBGene00000787	308	cps-6 [Caenorhabditis elegans	0.918	0.662	0.553	7.1e-61
ZFIN|ZDB-GENE-050522-402	306	endog "endonuclease G" [Danio	0.905	0.656	0.524	2.5e-56
UNIPROTKB|F1NJJ6	304	LOC100859613 "Uncharacterized	0.900	0.657	0.527	1.8e-55
FB|FBgn0052463	318	Tengl2 "Testis EndoG-Like 2" [	0.909	0.635	0.541	2.3e-55
UNIPROTKB|P38447	299	ENDOG "Endonuclease G, mitocho	0.900	0.668	0.507	4.9e-53
MGI|MGI:1261433	294	Endog "endonuclease G" [Mus mu	0.900	0.680	0.502	6.3e-53
RGD|1310763	294	Endog "endonuclease G" [Rattus	0.900	0.680	0.502	8e-53
UNIPROTKB|Q14249	297	ENDOG "Endonuclease G, mitocho	0.900	0.673	0.502	1.3e-52
UNIPROTKB|E2RQB6	300	ENDOG "Uncharacterized protein	0.900	0.666	0.502	2.7e-52

FB|FBgn0033690 EndoG "Endonuclease G" [Drosophila melanogaster (taxid:7227)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 131/204 (64%), Positives = 163/204 (79%)

Query:     1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
             MKYGFP LD +RS  D+VLSYDRRNR  +WVFEHLT E+ A ++AV+RSK +F +D+SIH
Sbjct:    77 MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIH 136

Query:    61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
              +FR +N+DY+ SGYDRGH+AAAGNH+ +QKH D+TF LSN++PQVG GFNRD W  LE 
Sbjct:   137 PFFRSQNTDYRRSGYDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEA 196

Query:   121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
             H R+L K Y NVYVCTGPLYLP K  +GK YV YEVIG + VAVPTHF+K+IV E+ + K
Sbjct:   197 HVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVGESADHK 256

Query:   181 LVMENYVLPNAVISDSTPLTSFMV 204
             L ME+YV+PN VIS+ TP++ F V
Sbjct:   257 LHMESYVMPNQVISNDTPISVFQV 280

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0004520 "endodeoxyribonuclease activity" evidence=ISS;IDA

GO:0006261 "DNA-dependent DNA replication" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0000001 "mitochondrion inheritance" evidence=IMP

GO:0007286 "spermatid development" evidence=IMP

WB|WBGene00000787 cps-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 113/204 (55%), Positives = 151/204 (74%)

Query:     1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
             MK+G+P   ++R+++DFVLSYD + RTA+WV EHLT E   ++E V+R   EF  D +  
Sbjct:    70 MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFP 129

Query:    61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
             + F  +N+DYK SG+DRGHLAAAGNH+ +Q  +DQTF LSN+SPQVG GFNRDKW +LE 
Sbjct:   130 QKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEM 189

Query:   121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
             H R++ K+  N Y+ TGPLYLP    +GKKY+ Y+VIGD+NVAVPTHFFK+ + E   GK
Sbjct:   190 HCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGK 249

Query:   181 LVMENYVLPNAVISDSTPLTSFMV 204
               +E+Y+LPNAVI D+  ++ F V
Sbjct:   250 FELESYILPNAVIEDTVEISKFHV 273

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008219 "cell death" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0006309 "apoptotic DNA fragmentation" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004519 "endonuclease activity" evidence=IDA

GO:0004520 "endodeoxyribonuclease activity" evidence=IDA

GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0006401 "RNA catabolic process" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

ZFIN|ZDB-GENE-050522-402 endog "endonuclease G" [Danio rerio (taxid:7955)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 107/204 (52%), Positives = 141/204 (69%)

Query:     1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
             MKYGFPSL +++S + +V SYD RNRTA WV E L  E    S   +R   EF ED+S+H
Sbjct:    76 MKYGFPSLSNIKSRESYVTSYDPRNRTAAWVIEQLNAETVTGSS--DRKYCEFKEDESVH 133

Query:    61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
              Y R  N+DYK SG+DRGHLAAA NHK +QK +D+TF LSN+SPQ     N++ W  LEK
Sbjct:   134 VYHRSSNADYKGSGFDRGHLAAAANHKWSQKAMDETFYLSNVSPQ-NPNLNQNAWNNLEK 192

Query:   121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
             + R L K Y NV+VCTGPLYLP +  +GK YV Y+V+G ++VAVPTHFFK+++ E   G 
Sbjct:   193 YCRSLTKHYQNVFVCTGPLYLPRQEADGKMYVKYQVLGKNHVAVPTHFFKVVILEKPRGD 252

Query:   181 LVMENYVLPNAVISDSTPLTSFMV 204
             + + +YV+PN  + +  PL  F+V
Sbjct:   253 VELRSYVMPNMPVDEKIPLERFLV 276

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NJJ6 LOC100859613 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 107/203 (52%), Positives = 142/203 (69%)

Query:     2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
             KYG P L  LRS + +VL YD R+R+A WV E L +E    S    RS  +F EDDS+HE
Sbjct:    72 KYGLPGLAQLRSRESYVLCYDPRSRSALWVIEQLNRETL--SGTSERSACDFQEDDSVHE 129

Query:    62 YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
             Y R  N+DY+ SG+DRGHLAAA NHK +QK +  TF LSN++PQV    N++ W  LEK+
Sbjct:   130 YHRATNADYRGSGFDRGHLAAAANHKWSQKAMRDTFYLSNVAPQV-PHLNQNAWNNLEKY 188

Query:   122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
             SR L ++  NVYVCTGPLYLP    +GK YV Y+VIG +NVAVPTHFFK+++ E E+G++
Sbjct:   189 SRSLARRNKNVYVCTGPLYLPRMEADGKMYVKYQVIGKNNVAVPTHFFKVLILEKESGEI 248

Query:   182 VMENYVLPNAVISDSTPLTSFMV 204
              + +YV+PN+ + +  PL  F+V
Sbjct:   249 ELRSYVMPNSPVDEKIPLERFLV 271

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

FB|FBgn0052463 Tengl2 "Testis EndoG-Like 2" [Drosophila melanogaster (taxid:7227)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/205 (54%), Positives = 142/205 (69%)

Query:     1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
             MK+GFP LD LR + DFVLSYDRRNR A+WV EHL + ++ +     R ++ +  D S+ 
Sbjct:    76 MKFGFPGLDDLRLYSDFVLSYDRRNRVAHWVCEHL-QADSIHPNRGRRGRNPYQPDLSVP 134

Query:    61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
               FR   SDY+ SG+DRGHLAAAGNH   Q H + TF L+NI+PQVG GFNR  W  LE+
Sbjct:   135 SNFRSELSDYRRSGFDRGHLAAAGNHHLQQNHCEDTFFLTNIAPQVGQGFNRSAWNNLEQ 194

Query:   121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENEN-- 178
             + R L+ ++ +V+VCTGPLY P + P GK  V YE+IG + VAVPTHFFK+I+ E++   
Sbjct:   195 YVRNLVHRFGSVFVCTGPLYKPNQRPGGKWAVEYEMIGLNMVAVPTHFFKVIMVESKLHL 254

Query:   179 GKLVMENYVLPNAVISDSTPLTSFM 203
             GK  ME YVLPNA I D  PL SF+
Sbjct:   255 GKPYMEGYVLPNAPIPDGLPLRSFL 279

GO:0005739 "mitochondrion" evidence=ISS

GO:0004520 "endodeoxyribonuclease activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|P38447 ENDOG "Endonuclease G, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 103/203 (50%), Positives = 137/203 (67%)

Query:     2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
             KYG P +  L+S   +VL YD R R A WV E L  E        NRS  +F EDDS+H 
Sbjct:    68 KYGLPGVAQLKSRASYVLCYDPRTRGALWVVEQLRPEGLRGDG--NRSSCDFHEDDSVHA 125

Query:    62 YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
             Y R  N+DY+ SG+DRGHLAAA NH+ +QK +D TF LSN++PQV    N++ W  LEK+
Sbjct:   126 YHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQV-PHLNQNAWNNLEKY 184

Query:   122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
             SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct:   185 SRSLTRTYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 244

Query:   182 VMENYVLPNAVISDSTPLTSFMV 204
              + +YV+PNA + ++ PL  F+V
Sbjct:   245 ELRSYVMPNAPVDEAIPLEHFLV 267

GO:0005739 "mitochondrion" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1261433 Endog "endonuclease G" [Mus musculus (taxid:10090)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 102/203 (50%), Positives = 139/203 (68%)

Query:     2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
             KYG P +  LRS + +VLSYD R R A WV E L  E        +RS  +F EDDS+H 
Sbjct:    63 KYGLPGVAQLRSRESYVLSYDPRTRGALWVLEQLRPERLRGDG--DRSACDFREDDSVHA 120

Query:    62 YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
             Y R  N+DY+ SG+DRGHLAAA NH+ +Q+ +D TF LSN++PQV    N++ W  LE++
Sbjct:   121 YHRATNADYRGSGFDRGHLAAAANHRWSQRAMDDTFYLSNVAPQV-PHLNQNAWNNLERY 179

Query:   122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
             SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct:   180 SRSLTRTYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 239

Query:   182 VMENYVLPNAVISDSTPLTSFMV 204
              + +YV+PNA + ++ PL  F+V
Sbjct:   240 ELRSYVMPNAPVDETIPLERFLV 262

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006309 "apoptotic DNA fragmentation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0046677 "response to antibiotic" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310763 Endog "endonuclease G" [Rattus norvegicus (taxid:10116)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 102/203 (50%), Positives = 138/203 (67%)

Query:     2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
             KYG P +  LRS + +VLSYD R R A WV E L  E        +R   +F EDDS+H 
Sbjct:    63 KYGLPGVAQLRSRESYVLSYDPRTRGALWVLEQLRPERLRGDG--DRRACDFHEDDSVHA 120

Query:    62 YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
             Y R  N+DY+ SG+DRGHLAAA NH+ +Q+ +D TF LSN++PQV    N+  W  LEK+
Sbjct:   121 YHRATNADYRGSGFDRGHLAAAANHRWSQRAMDDTFYLSNVAPQV-PHLNQHAWNNLEKY 179

Query:   122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
             SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E  +G++
Sbjct:   180 SRSLTRTYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAASGQI 239

Query:   182 VMENYVLPNAVISDSTPLTSFMV 204
              + +YV+PNA + ++ PL  F+V
Sbjct:   240 ELRSYVMPNAPVDETLPLERFLV 262

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA;ISO

GO:0034612 "response to tumor necrosis factor" evidence=IEA;ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0046677 "response to antibiotic" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q14249 ENDOG "Endonuclease G, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/203 (50%), Positives = 137/203 (67%)

Query:     2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
             KYG P L  L+S + +VL YD R R A WV E L  E        +R + +F EDDS+H 
Sbjct:    66 KYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDG--DRRECDFREDDSVHA 123

Query:    62 YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
             Y R  N+DY+ SG+DRGHLAAA NH+ +QK +D TF LSN++PQV    N++ W  LEK+
Sbjct:   124 YHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQV-PHLNQNAWNNLEKY 182

Query:   122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
             SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct:   183 SRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 242

Query:   182 VMENYVLPNAVISDSTPLTSFMV 204
              +  YV+PNA + ++ PL  F+V
Sbjct:   243 ELRTYVMPNAPVDEAIPLERFLV 265

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RQB6 ENDOG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 102/203 (50%), Positives = 138/203 (67%)

Query:     2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
             KYG P L  L+S + +VL YD R R A WV E L  E     +   RS  +F EDDS+H 
Sbjct:    69 KYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLR-GDGDRRS-CDFREDDSVHA 126

Query:    62 YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
             Y R  N+DY+ SG+DRGHLAAA NH+ +QK ++ TF LSN++PQV    N++ W  LEK+
Sbjct:   127 YHRATNADYRGSGFDRGHLAAAANHRWSQKAMEDTFYLSNVAPQV-PHLNQNAWNNLEKY 185

Query:   122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
             SR L + Y NVYVCTGPL+LP    +GK YV Y+VIG ++VAVPTHFFK+++ E   G++
Sbjct:   186 SRSLTRTYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQI 245

Query:   182 VMENYVLPNAVISDSTPLTSFMV 204
              + +YV+PNA + ++ PL  F+V
Sbjct:   246 ELRSYVMPNAPVDEAVPLERFLV 268

GO:0046677 "response to antibiotic" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95NM6	NUCG_CAEEL	3, ., 1, ., 3, 0, ., -	0.5539	0.9189	0.6623	yes	N/A
P38447	NUCG_BOVIN	3, ., 1, ., 3, 0, ., -	0.5073	0.9009	0.6688	yes	N/A
O08600	NUCG_MOUSE	3, ., 1, ., 3, 0, ., -	0.5024	0.9009	0.6802	yes	N/A
P08466	NUC1_YEAST	3, ., 1, ., 3, 0, ., -	0.4888	0.9729	0.6565	yes	N/A
Q14249	NUCG_HUMAN	3, ., 1, ., 3, 0, ., -	0.5024	0.9009	0.6734	yes	N/A
Q10480	PNU1_SCHPO	3, ., 1, ., 3, 0, ., -	0.4099	0.9729	0.6708	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.30	0.691
3rd Layer	3.1.21.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.21	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	222
smart00477	210	smart00477, NUC, DNA/RNA non-specific endonuclease	7e-65
cd00091	241	cd00091, NUC, DNA/RNA non-specific endonuclease; p	7e-62
PTZ00259	434	PTZ00259, PTZ00259, endonuclease G; Provisional	2e-57
smart00892	198	smart00892, Endonuclease_NS, DNA/RNA non-specific	2e-55
pfam01223	157	pfam01223, Endonuclease_NS, DNA/RNA non-specific e	3e-48
COG1864	281	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucle	5e-41

>gnl|CDD|214683 smart00477, NUC, DNA/RNA non-specific endonuclease

 Score =  199 bits (508), Expect = 7e-65
 Identities = 88/192 (45%), Positives = 111/192 (57%), Gaps = 5/192 (2%)

Query: 16  DFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGY 75
            +VL Y+R  R   WV  H+T E         R    F  D  I E F+ + SDYK SGY
Sbjct: 3   QYVLGYNRSTRMPNWVAYHITGELLT--SGAERKSDCFKPDTRIPEKFQAKLSDYKGSGY 60

Query: 76  DRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLL-KQYPNVYV 134
           DRGHLA A +HK + + +  TF LSNI PQ    FNR  WA LE + RKL   +   VYV
Sbjct: 61  DRGHLAPAADHKFSSEAMADTFYLSNIVPQYP-DFNRGAWAYLEDYLRKLTASERNGVYV 119

Query: 135 CTGPLYLPMKSPNGKK-YVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVI 193
            +GPL+LP     G K  V Y+VIG  NVA+PTHFFK+I AE  +  L +  ++LPN  I
Sbjct: 120 VSGPLFLPNYDGKGDKLEVKYQVIGSKNVAIPTHFFKVITAEKADSYLEVAAFILPNDPI 179

Query: 194 SDSTPLTSFMVS 205
           +D +PLT+F V 
Sbjct: 180 NDESPLTNFRVP 191

prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases. Length = 210

>gnl|CDD|238043 cd00091, NUC, DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases

 Score =  192 bits (491), Expect = 7e-62
 Identities = 84/203 (41%), Positives = 119/203 (58%), Gaps = 8/203 (3%)

Query: 1   MKYGFPSLDS---LRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDD 57
           ++YG P + +   + S+  +VLSY+R  R   WV EH+ KE+    + V+R   +F +D 
Sbjct: 1   LQYGRPGVLADTEVLSYTHYVLSYNRATRLPLWVAEHIDKED--LGKNVDRKYDQFKQDP 58

Query: 58  SIHEYFRGRNSDYKYSG-YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWA 116
            I   F   NSDYK SG  DRGHLA A +   +Q   D TF L+N++PQV  GFN+  WA
Sbjct: 59  RIPPLFSATNSDYKGSGSLDRGHLAPAADPVWSQDAQDATFYLTNMAPQVQ-GFNQGNWA 117

Query: 117 ELEKHSRKL-LKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAE 175
            LE + R L   +  +VYV TGPL+LP    +G  Y++ +VI +  VAVPTHF+K+I+ E
Sbjct: 118 YLEDYLRDLAASEGKDVYVVTGPLFLPDLDGDGGSYLSTQVINNGKVAVPTHFWKVIIDE 177

Query: 176 NENGKLVMENYVLPNAVISDSTP 198
              G L +  +VLPN    D+  
Sbjct: 178 KAPGNLSVGAFVLPNNNPHDTLE 200

They exists as monomers and homodimers. Length = 241

>gnl|CDD|240335 PTZ00259, PTZ00259, endonuclease G; Provisional

 Score =  187 bits (476), Expect = 2e-57
 Identities = 89/230 (38%), Positives = 121/230 (52%), Gaps = 28/230 (12%)

Query: 4   GFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKE---NTAYSEAVNRSKSEFFEDDSIH 60
           G PS ++LR ++ +V S +   R   WV E++        A  +  NR+   F+ D ++ 
Sbjct: 104 GLPSTENLRLYEGYVSSLNYERRIPNWVAEYIPYRGISVEAGEKKANRADCVFYADPTVP 163

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
           E FR  N DY  SGY RGHLAAAG HKA+Q  +D TF+LS          N   W  LE 
Sbjct: 164 EAFRAENKDYTGSGYSRGHLAAAGFHKASQTAMDDTFLLSANIVPQDLTNNAGDWLRLEN 223

Query: 121 HSRKLLKQY-PNVYVCTGPLYLP--------------------MKSPNG---KKYVNYEV 156
            +RKL ++Y   VYV +GPL++P                      SP     KK V YEV
Sbjct: 224 LTRKLAREYEVGVYVVSGPLFVPRYMREKLRKWRLAEPSEIHKPDSPADKTPKKVVTYEV 283

Query: 157 IGDSNVAVPTHFFKIIVAENENGKLV-MENYVLPNAVISDSTPLTSFMVS 205
           IGD+NVAVPTH FK+I+AE  +G    +  +++PN  IS   PLT++ V 
Sbjct: 284 IGDNNVAVPTHLFKVILAEKNDGPPHEVAAFLMPNEPISKEKPLTAYQVP 333

Length = 434

>gnl|CDD|214889 smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease

 Score =  175 bits (445), Expect = 2e-55
 Identities = 80/195 (41%), Positives = 104/195 (53%), Gaps = 18/195 (9%)

Query: 14  FDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDD-SIHEYFRGRNSDYKY 72
           +  + L YD R R   WV  HLT           R +  F  D   +   F+  NSDY  
Sbjct: 1   YKHYALCYDERRRLPLWVAYHLTGSTRQGKNT-GRKRPWFKPDGWHLPAIFQAVNSDYTG 59

Query: 73  SGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPN- 131
           SGYDRGHLA A +H  +Q+ +  TF L+NI PQ  AGFN+  W  LE + RKLL +  + 
Sbjct: 60  SGYDRGHLAPAADHGVSQEAMAATFYLTNIVPQT-AGFNQGNWNRLENYVRKLLAKNKDT 118

Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENE-NGKLVMENYVLPN 190
           VYV TGP+YLP    N             NVAVP+HF+K+I++E+  NG L    + LPN
Sbjct: 119 VYVVTGPIYLPTLPDN-------------NVAVPSHFWKVILSEDGSNGGLAAIAFNLPN 165

Query: 191 AVISDSTPLTSFMVS 205
           A I++  PL  F V 
Sbjct: 166 APINEDYPLCEFQVP 180

A family of bacterial and eukaryotic endonucleases share the following characteristics: they act on both DNA and RNA, cleave double-stranded and single-stranded nucleic acids and require a divalent ion such as magnesium for their activity. An histidine has been shown to be essential for the activity of the Serratia marcescens nuclease. This residue is located in a conserved region which also contains an aspartic acid residue that could be implicated in the binding of the divalent ion. Length = 198

>gnl|CDD|216372 pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease

 Score =  155 bits (393), Expect = 3e-48
 Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 12/153 (7%)

Query: 17  FVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYD 76
           + + YDRR R A WV  HLT  + A S    R    F ED  I   FR   SDYK SG+D
Sbjct: 5   YSVCYDRRTRRALWVAHHLTGASLARSRGRRR-LDSFKEDPRIPAAFRATLSDYKGSGFD 63

Query: 77  RGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCT 136
           RGHLA A    A+      TF  +N++PQ  AGFNR  WA LE + R L ++  +VYV T
Sbjct: 64  RGHLAPAAADFASTSAQKATFYYTNMAPQ-WAGFNRGNWAYLENYVRDLARKNRDVYVYT 122

Query: 137 GPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFF 169
           GPL +P              +G++ VAVPTHF+
Sbjct: 123 GPLGVP----------TLPTLGNNKVAVPTHFW 145

Length = 157

>gnl|CDD|224777 COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]

 Score =  140 bits (355), Expect = 5e-41
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 21/209 (10%)

Query: 2   KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE 61
           K G P+   L  ++ F + Y+R  +   WV  ++   +    +     + +FF D  I E
Sbjct: 54  KDGLPN--YLLVYNHFSVVYNRSTKLPNWVAVNIDGSSLKKIK----RRDKFFPDTRIPE 107

Query: 62  YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH 121
            +R   SDYK SGYDRGH+    +     +  + TF ++N++PQ     NR  W ELE +
Sbjct: 108 KYRATLSDYKGSGYDRGHMVPPADGDFAIQANNDTFYMTNMTPQAAD-LNRKIWLELEDY 166

Query: 122 SRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKL 181
            R L ++Y +V +     Y                I  + VAVP+ F+K++V   ++G  
Sbjct: 167 CRNLARKYGSVVIVFTGPYFRKDDT---------FIEKNKVAVPSEFWKVVVTLKKDGND 217

Query: 182 VMEN-----YVLPNAVISDSTPLTSFMVS 205
                    + +PN     +  L ++ V 
Sbjct: 218 SAAYLRVQAFYIPNLPGFRNGALKTYQVP 246

Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG3721|consensus	302		100.0
PTZ00259	434	endonuclease G; Provisional	100.0
smart00477	209	NUC DNA/RNA non-specific endonuclease. prokaryotic	100.0
cd00091	241	NUC DNA/RNA non-specific endonuclease; prokaryotic	100.0
COG1864	281	NUC1 DNA/RNA endonuclease G, NUC1 [Nucleotide tran	100.0
PF01223	207	Endonuclease_NS: DNA/RNA non-specific endonuclease	100.0
PF13930	130	Endonuclea_NS_2: DNA/RNA non-specific endonuclease	97.37

>KOG3721|consensus

Probab=100.00  E-value=8.8e-69  Score=441.69  Aligned_cols=220  Identities=58%  Similarity=0.943  Sum_probs=210.1

Q ss_pred             CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCccccc
Q psy10887          1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHL   80 (222)
Q Consensus         1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL   80 (222)
                      ||||+|..+++..+.+|++|||+++|.|+||+++|+++.+.. ...+|+.+.|++|..||+.+++.+.||++||||||||
T Consensus        61 ~kyGfPG~~~~r~~~~fvlsYDrrtR~p~WV~Ehit~e~l~~-~d~dRk~c~Fk~D~~Ip~~F~a~n~DY~~SG~dRGHl  139 (302)
T KOG3721|consen   61 MKYGFPGLDELRVYENFVLSYDRRTRVPHWVCEHITPESLAE-RDADRKPCEFKPDDTIPPKFRAKNRDYRGSGYDRGHL  139 (302)
T ss_pred             HHcCCCCcchheeccceeEEeccccCcceeeeeccCHHHhhh-cccccccccCcCCCCcCHhHhhhcccccccCCccccc
Confidence            899999999999999999999999999999999999998863 3448888999999999999999999999999999999


Q ss_pred             ccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887         81 AAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS  160 (222)
Q Consensus        81 ~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~  160 (222)
                      ||++|+.+++.++.+|||||||+||.+..||++.|++||.++|+++.+.+.+||+|||+|+|..+.+|+++++|++||++
T Consensus       140 A~A~n~k~sq~amdeTFYLSNm~PQvg~gfNr~~Wn~lE~~cR~lt~~y~sV~V~TGPLyLPk~~~dgk~~VkYqVIG~n  219 (302)
T KOG3721|consen  140 APAGNHKFSQKAMDETFYLSNMVPQVGDGFNRDYWNRLEMYCRRLTKKYDSVYVVTGPLYLPKKEGDGKWYVKYQVIGNN  219 (302)
T ss_pred             ccccccchhHHHHHhhhhhhccCcccccccchhHHHHHHHHHHHHHhhhCeEEEEecccccccccCCCceEEEEEEeCCC
Confidence            99999999999999999999999999656999999999999999999999999999999999998899999999999999


Q ss_pred             cccccccceEEEEEecCCC-ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        161 NVAVPTHFFKIIVAENENG-KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       161 ~v~VP~~f~Kvv~~~~~~~-~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      .|+||+||||||+.+...+ .+...|||+||.+++.+.+|++|+|||++||+.+||.||+.-
T Consensus       220 ~VAVPTHFfKVii~E~~~~~~~~l~ayVlPN~~I~~~~~L~~F~Vpve~vEr~aGL~f~~~~  281 (302)
T KOG3721|consen  220 NVAVPTHFFKVIIAEAEPGEKPALEAYVLPNAPIDDDTPLTSFLVPVEDVERSAGLEFFDNL  281 (302)
T ss_pred             CcccccceeeEEEeecCCCCCceeeeeecCCccccCCCccceeecCHHHHhhhccceeccCC
Confidence            9999999999999998766 788999999999999999999999999999999999999864

>PTZ00259 endonuclease G; Provisional

Probab=100.00  E-value=3e-61  Score=429.60  Aligned_cols=220  Identities=41%  Similarity=0.686  Sum_probs=195.3

Q ss_pred             CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEcccccc---ccccCCCCCCCCCCCCcccCccccccCCCCccCCCcc
Q psy10887          1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENT---AYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDR   77 (222)
Q Consensus         1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~---~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dR   77 (222)
                      |+||+|+.++||++.+|+++||..+++|+||||+|++...   .......|+.+.|++|++||..+|+.++||++|||||
T Consensus       101 ~~~G~Ps~~~ll~~~~Yvvsys~~~r~P~WVae~Lt~~~~~~~~~~~~~~R~~~~F~~DprIP~~~ra~~sDY~~SgydR  180 (434)
T PTZ00259        101 PSFGLPSTENLRLYEGYVSSLNYERRIPNWVAEYIPYRGISVEAGEKKANRADCVFYADPTVPEAFRAENKDYTGSGYSR  180 (434)
T ss_pred             hhcCCCCCcceEeecCEEEEEccccCCceEEEEEeeccccccccccccccCcCCCCccCCCCChhhccchhhhcccCccc
Confidence            6899999999999999999999999999999999985321   1123567876789999999999999999999999999


Q ss_pred             cccccCCCccccHHhhhhhhhhh-CccccCCCCCchhHHHHHHHHHHHHHhcCCC-EEEEEcccccCCCC----------
Q psy10887         78 GHLAAAGNHKANQKHLDQTFVLS-NISPQVGAGFNRDKWAELEKHSRKLLKQYPN-VYVCTGPLYLPMKS----------  145 (222)
Q Consensus        78 GHL~p~~d~~~~~~~~~~Tf~~s-Ni~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~-l~VvtG~~~~~~~~----------  145 (222)
                      |||+|++|+.++++++.+||+|| ||+||+ +.||+|+|.+||+++|+++.+.+. |||||||+|.++..          
T Consensus       181 GHLaP~~d~~~s~~a~~~TF~lstNivPQ~-~~fN~g~W~~LE~~vR~la~~~~~~vyVvTGpif~p~~~~~~~~~~~~~  259 (434)
T PTZ00259        181 GHLAAAGFHKASQTAMDDTFLLSANIVPQD-LTNNAGDWLRLENLTRKLAREYEVGVYVVSGPLFVPRYMREKLRKWRLA  259 (434)
T ss_pred             cccccccccccCHHHHhhhhcchhccCccc-hhhhhhHHHHHHHHHHHHHHHcCCcEEEEeCeeecCCcccccccccccc
Confidence            99999999989989999999995 999999 999999999999999999988776 99999999987631          


Q ss_pred             -------------CCCceeeeeeeeCCCcccccccceEEEEEecCCC-ceEEEEEEEeCCCCCCCCCccccccChHHHHH
Q psy10887        146 -------------PNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG-KLVMENYVLPNAVISDSTPLTSFMVSTYLLKC  211 (222)
Q Consensus       146 -------------~~g~~~~~~~~~g~~~v~VP~~f~Kvv~~~~~~~-~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~  211 (222)
                                   ..++.+++|.++|++.|+||+||||||+.++.++ .+.++||||||.+...+.+|..|+|||++||+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~v~y~~iG~~~VaVPthffKVVl~~k~~~~~~~a~AFv~PN~~~~~~~~L~~y~VsV~dIE~  339 (434)
T PTZ00259        260 EPSEIHKPDSPADKTPKKVVTYEVIGDNNVAVPTHLFKVILAEKNDGPPHEVAAFLMPNEPISKEKPLTAYQVPLEEIEK  339 (434)
T ss_pred             cccccccccccccccccceeeeeecCCCCccCChHHheEEEEecCCCCceEEEEEEecCCCccCCCCcceEeeeHHHHHH
Confidence                         1234456678888889999999999999997765 68899999999987777899999999999999


Q ss_pred             HhcCcccccc
Q psy10887        212 SYIINLLIMF  221 (222)
Q Consensus       212 ~tGl~ff~~~  221 (222)
                      +|||+||++.
T Consensus       340 ~TGLdFFp~L  349 (434)
T PTZ00259        340 LTGLQFFPKL  349 (434)
T ss_pred             HHCcccccCC
Confidence            9999999875

>smart00477 NUC DNA/RNA non-specific endonuclease

Probab=100.00  E-value=2.6e-60  Score=392.23  Aligned_cols=205  Identities=44%  Similarity=0.700  Sum_probs=182.8

Q ss_pred             cCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCcccccccCCCccccHHhh
Q psy10887         14 FDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHL   93 (222)
Q Consensus        14 ~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL~p~~d~~~~~~~~   93 (222)
                      +.+|++|||..+++|+||+|.|+++....  ...|..++|+.|++||..+|+.++||.+||||||||+|++|+.++.+++
T Consensus         1 ~~~y~~~yd~~~~~p~w~a~~l~~~~~~~--~~~~~~~~f~~D~~l~~~~~~~~~dY~~sg~dRGHL~p~~d~~~~~~~~   78 (209)
T smart00477        1 RNQYVLSYNRSTRMPNWVAYHITGELLTS--GKERKSDNFKPDTRIPEKFQAKLSDYKGSGYDRGHLAPAADHKFSSEAM   78 (209)
T ss_pred             CCceEEEECcccCceEEEEEEecHHHcCC--CCCCCCCCcccCCCCChhhccChHHhhccCCccccccChhhccCCHHHH
Confidence            46899999999999999999999987642  2223347999999999999999999999999999999999999898899


Q ss_pred             hhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhc-CCCEEEEEcccccCCCCCCCceeeeeeeeCCCcccccccceEEE
Q psy10887         94 DQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ-YPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKII  172 (222)
Q Consensus        94 ~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~-~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~~v~VP~~f~Kvv  172 (222)
                      .+||+||||+||+ ++||+|+|++||+.+|+++.. .++|||||||+|.++....+...+.+.++|.++|+||+||||||
T Consensus        79 ~~TF~~sNi~PQ~-~~fN~g~W~~lE~~vr~~~~~~~~~v~V~tG~~~~~~~~~~~~~~~~~~~i~~~~V~VP~~f~Kvv  157 (209)
T smart00477       79 ADTFYLSNIVPQY-PDFNRGAWAYLEDYLRKLTASEYNGVYVVSGPLFLPDYDGKGKLEVKYQVIGSKNVAIPTHFFKVI  157 (209)
T ss_pred             HHHHhhhhcccch-hhhhhHHHHHHHHHHHHHHHhhCCCEEEEeCcccCCCcCCCCcceEEEeecCCcccccccceEEEE
Confidence            9999999999999 999999999999999999975 89999999999987754444445566778888999999999999


Q ss_pred             EEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        173 VAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       173 ~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      ++++.++.+.++||+|||++.....+|++|++||+|||++|||+||+..
T Consensus       158 ~~~~~~~~~~~~af~~pn~~~~~~~~l~~~~vsv~~iE~~tGl~Ff~~l  206 (209)
T smart00477      158 TAEKADSNLEVAAFILPNDPINDESPLTNFRVPVDEIERLTGLVFFQNL  206 (209)
T ss_pred             EEecCCCCEEEEEEEcCCCCCCCCCCHHHccCcHHHHHHHhChHhhhcC
Confidence            9998777889999999999876656899999999999999999999864

prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases

>cd00091 NUC DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases

Probab=100.00  E-value=5.9e-58  Score=385.79  Aligned_cols=218  Identities=39%  Similarity=0.660  Sum_probs=193.0

Q ss_pred             CCcCCCCCC---cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCC-Cc
Q psy10887          1 MKYGFPSLD---SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSG-YD   76 (222)
Q Consensus         1 ~~~G~P~~~---~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg-~d   76 (222)
                      |++|+|..+   ++|.+.+|++|||..+++|.||+|.|+++...  ....|..+.|+.|++|+..+|+.+++|.+++ ||
T Consensus         1 ~~~g~p~~~~~~~~l~~~~y~~~y~~~~~~p~wva~~l~~~~~~--~~~~~~~~~~~~D~~l~~~~~~~~~~Y~~s~~~d   78 (241)
T cd00091           1 LQYGRPGVLADTEVLSYTHYVLSYNRATRLPLWVAEHIDKEDLG--KNVDRKYDQFKQDPRIPPLFSATNSDYKGSGSLD   78 (241)
T ss_pred             CCcCCCCcCCcccEEEecCEEEEECcccCcceEEEEEecHHHcc--CCcCcCCCceecCCCCChHHccchhhhccCCCcc
Confidence            689999975   49999999999999999999999999998752  2233334799999999999999999999999 99


Q ss_pred             ccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHH-hcCCCEEEEEcccccCCCCCCCceeeeee
Q psy10887         77 RGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLL-KQYPNVYVCTGPLYLPMKSPNGKKYVNYE  155 (222)
Q Consensus        77 RGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~-~~~~~l~VvtG~~~~~~~~~~g~~~~~~~  155 (222)
                      ||||+|++|+.++++++.+||+||||+||+ ++||+|+|++||+++|+++ ...++|||||||+|.+.....+..++.+.
T Consensus        79 RGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~-~~~N~g~W~~LE~~vr~~~~~~~~~v~V~tG~~~~~~~~~~~~~~~~~~  157 (241)
T cd00091          79 RGHLAPAADPVWSQDAQDATFYLTNMAPQV-QGFNQGNWAYLEDYLRDLAASEGKDVYVVTGPLFLPDLDGDGGSYLSTQ  157 (241)
T ss_pred             ccccCcccccCcCHHHHhcceeceecCCCC-cchhhhHHHHHHHHHHHHHHhcCCcEEEEECceEcCCccccCCeeEEEe
Confidence            999999999999889999999999999999 9999999999999999999 77899999999999876544444455555


Q ss_pred             eeCCCcccccccceEEEEEecCCCceEEEEEEEeCCCCCCCC-----CccccccChHHHHHHhcCcccccc
Q psy10887        156 VIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDST-----PLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       156 ~~g~~~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~-----~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      .++.++|+||+||||||+++..+++++++||+|||++.....     +++.|+++|++||++|||+||+..
T Consensus       158 ~~~~~~v~VP~~f~Kvv~~~~~~~~~~~~af~vpn~~~~~~~~~~~~~~~~~~v~v~~iE~~tGl~F~~~l  228 (241)
T cd00091         158 VINNGKVAVPTHFWKVIIDEKAPGNLSVGAFVLPNNNPHDTLEFILCVEKTFQVPVASVEKATGLSFFCNV  228 (241)
T ss_pred             eccCCccccccceeEEEEEecCCCCEEEEEEEccCCCCccccccccCccceeeccHHHHHHHhCcchhhcC
Confidence            677889999999999999998878889999999999754443     589999999999999999999864

They exists as monomers and homodimers.

>COG1864 NUC1 DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]

Probab=100.00  E-value=7.2e-53  Score=354.24  Aligned_cols=203  Identities=31%  Similarity=0.542  Sum_probs=180.3

Q ss_pred             CcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCcccccc
Q psy10887          2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLA   81 (222)
Q Consensus         2 ~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL~   81 (222)
                      ++|+|  ..+|.+.+|++|||..++.|.|||+.|+++.+.   ..+|. ++|++|++||+.+|+..+||++||||||||+
T Consensus        54 ~~~l~--~~~l~~~~fsv~~n~~~k~p~~vA~~i~~~~l~---~i~R~-~~f~~D~rip~~~~~~~~dY~~sg~DRGH~v  127 (281)
T COG1864          54 KDGLP--NYLLVYNHFSVVYNRSTKLPNWVAVNIDGSSLK---KIKRR-DKFFPDTRIPEKYRATLSDYKGSGYDRGHMV  127 (281)
T ss_pred             ccCCc--hhheeheeeeeEeccccCCceeEEEeechhhhh---hcccc-cccccCCCCChhhcccHhhhcCCCCCccccc
Confidence            35555  568999999999999999999999999999873   56777 4999999999999999999999999999999


Q ss_pred             cCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhc-CCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887         82 AAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ-YPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS  160 (222)
Q Consensus        82 p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~-~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~  160 (222)
                      |++|+.++.+++.+||+||||+||. +.+||+.|..||+++|++|.+ +..++|+|||+|..+.          -.++.+
T Consensus       128 p~a~~~~a~~a~~dTF~~TN~~PQ~-~~~Nr~~W~~lE~~~R~la~~~~~~~~V~tgp~~~~~~----------~~~~~~  196 (281)
T COG1864         128 PPADGDFAIQANNDTFYMTNMTPQA-ADLNRKIWLELEDYCRNLARKYGSVVIVFTGPYFRKDD----------TFIEKN  196 (281)
T ss_pred             CCCCCcchhhcchhhheeecCCCcc-hhhhhhHHHHHHHHHHHHHHhcCcEEEEEecceecCCC----------cccCCC
Confidence            9999999999999999999999999 999999999999999999986 5689999999986431          134567


Q ss_pred             cccccccceEEEEEecCCC-----ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        161 NVAVPTHFFKIIVAENENG-----KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       161 ~v~VP~~f~Kvv~~~~~~~-----~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      +|+||++|||||+..+.+|     .+.++||++||.+.-...++++|+|+|++||+.||++|+.+.
T Consensus       197 ~V~VP~~fwKvv~~~~~~g~~s~a~~~~~~~~ipN~~~~~~~~~k~yqV~v~~lE~~~~~~~lsn~  262 (281)
T COG1864         197 KVAVPSEFWKVVVTLKKDGNDSAAYLRVQAFYIPNLPGFRNGALKTYQVPVDELEAGTGFDFLSNV  262 (281)
T ss_pred             cEEeecceeEEEEEecCCCCcchhhhhhheeecCCccccccccceeeeeeHHHHhhccccchhccC
Confidence            8999999999999988433     247999999999866667999999999999999999999764

>PF01223 Endonuclease_NS: DNA/RNA non-specific endonuclease; InterPro: IPR001604 A family of bacterial and eukaryotic endonucleases 3

Probab=100.00  E-value=1.4e-52  Score=344.97  Aligned_cols=199  Identities=35%  Similarity=0.598  Sum_probs=162.2

Q ss_pred             cCCeEEEEeCCCCceeEEEEEccccccccccCC---CCCCCCCCCCcccCccccccCCCCccCCCcccccccCCCccccH
Q psy10887         14 FDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAV---NRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQ   90 (222)
Q Consensus        14 ~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~---~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL~p~~d~~~~~   90 (222)
                      +.+|++|||..+++|+||+|.|++.........   .+...+|..|++++...|...+||.+++||||||+|+++...+.
T Consensus         2 ~~~y~~~yd~~~~~p~~va~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~dy~~~~~dRGHL~p~~~~~~~~   81 (207)
T PF01223_consen    2 YENYAVCYDKDRRIPLWVAYILTPDSVNKSRPRVSKSRRSDRFYPDPRIPSAFQATDSDYKGSGYDRGHLAPSAADFFSA   81 (207)
T ss_dssp             -SSEEEEEETTTTEEEEEEEEECTTCGSSSTTG----GGGT--B--TTS-GGGSS-HHHHTTTTEEEEESS-GGGCCSSH
T ss_pred             CceEEEEECCCCCCEEEEEEEeEhhhcCCCCCccccccCCCCcEeCCCCChhheecccccccccccccccCcchhhhccc
Confidence            678999999999999999999999887432222   01236899999999989999999999999999999965555777


Q ss_pred             HhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEcccccCCCCCCCceeeeeeeeCCCcccccccce
Q psy10887         91 KHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLK-QYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFF  169 (222)
Q Consensus        91 ~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~-~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~~v~VP~~f~  169 (222)
                      .++.+||+||||+||+ +.||+|+|+.||+.||+++. ..++|+|+|||++.+..       ......++++|+||++||
T Consensus        82 ~~~~~Tf~~tN~~PQ~-~~fN~g~W~~lE~~vr~~~~~~~~~v~V~tG~~~~~~~-------~~~~~~~~~~v~VP~~fw  153 (207)
T PF01223_consen   82 EAQRATFYYTNIAPQW-ASFNQGNWKRLENWVRDLADKNGGDVYVVTGPIFDPNL-------SNYYPIGNNRVPVPTHFW  153 (207)
T ss_dssp             HHHHHCTBGGGEEEEC-HHHHHTHHHHHHHHHHHHHHCTHTEEEEEEEEECECEE-------CEEEEETTTTEE--SEEE
T ss_pred             hhhhhhhccccccchh-hhhccHHHHHHHHHHHHHHHhcCCeEEEEEeEEecCCc-------eEEeccCCeeEecchheE
Confidence            8999999999999999 99999999999999999998 68999999999987542       112356678999999999


Q ss_pred             EEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        170 KIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       170 Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      |||+++..++.++++||++||++.....++++| ++|+|||++||++||+.+
T Consensus       154 Kiv~~~~~~~~~~~~af~~~n~~~~~~~~~~~~-~sv~~iE~~tG~~f~~~l  204 (207)
T PF01223_consen  154 KIVCDPDNNGELKAIAFVIPNNNNPHSKNLEDY-VSVDEIEELTGLDFFCNL  204 (207)
T ss_dssp             EEEEEESSTTTEEEEEEEEESSSS-TTSTGGGG-E-HHHHHHHHTEETSTTS
T ss_pred             EEEEEecCCCceEEEEEEECCCCCCCccccccc-ccHHHHHHhhCCccCCCC
Confidence            999999987778999999999998777778899 999999999999999875

1.30 from EC share the following characteristics: they act on both DNA and RNA, cleave double-stranded and single-stranded nucleic acids and require a divalent ion such as magnesium for their activity. A histidine has been shown [] to be essential for the activity of the Serratia marcescens nuclease. This residue is located in a conserved region which also contains an aspartic acid residue that could be implicated in the binding of the divalent ion.; GO: 0003676 nucleic acid binding, 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 3OWV_A 3NKM_A 3NKN_A 3NKR_A 3NKQ_A 3NKO_A 3NKP_A 3S5B_A 1ZM8_A 2O3B_A ....

>PF13930 Endonuclea_NS_2: DNA/RNA non-specific endonuclease; PDB: 2XGR_A 2XH3_B

Probab=97.37  E-value=6.1e-05  Score=57.59  Aligned_cols=62  Identities=32%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             ccCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEccccc
Q psy10887         71 KYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYL  141 (222)
Q Consensus        71 ~~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~  141 (222)
                      ...+++||||.+..   ++-.  ..   .-|++||. +.+|++.|..+|+.+++.....+.|.+-.-|+|.
T Consensus        52 ~~~~~~~GHLIa~~---lgG~--~~---~~Nlv~~~-~~~N~~~~~~~E~~i~~~~~~g~~V~~~V~~~Y~  113 (130)
T PF13930_consen   52 GGYGDDRGHLIAYQ---LGGS--GE---LDNLVPQT-RNFNRGGMRYFENEIADALKPGKRVRYRVTPIYR  113 (130)
T ss_dssp             --EE--EEESS-HH---HH----SS----GGEEE---HHHHHTSSHHHHHHHHHHH-TTSEEEEEEEEE--
T ss_pred             CCccccccchHHHH---Hhcc--Cc---CCceeecC-HHHhHHHHHHHHHHHHHhhcCCCEEEEEEEEEec
Confidence            34579999998753   2211  11   15999999 9999999999999999977778888888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
3ism_A	267	Crystal Structure Of The EndogENDOGI COMPLEX: MECHA		4e-79
3s5b_A	249	Crystal Structure Of Ced-3 Protease Suppressor-6 (C		8e-66
4a1n_A	335	Human Mitochondrial Endo-Exonuclease Length = 335		6e-35
1zm8_A	259	Apo Crystal Structure Of Nuclease A From Anabaena S		2e-11
2o3b_A	241	Crystal Structure Complex Of Nuclease A (Nuca) With		3e-11
1smn_A	245	Identification Of The Serratia Endonuclease Dimer:		1e-06
1ql0_A	241	Sm Endonuclease From Seratia Marcenscens At Atomic		1e-06

>pdb|3ISM|A Chain A, Crystal Structure Of The EndogENDOGI COMPLEX: MECHANISM OF ENDOG Inhibition Length = 267

Iteration: 1
 Score =  290 bits (742), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 131/204 (64%), Positives = 163/204 (79%)
Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD +RS  D+VLSYDRRNR  +WVFEHLT E+ A ++AV+RSK +F +D+SIH
Sbjct: 23  MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIH 82
Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR +N+DY+ SGYDRGH+AAAGNH+ +QKH D+TF LSN++PQVG GFNRD W  LE 
Sbjct: 83  PFFRSQNTDYRRSGYDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEA 142
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H R+L K Y NVYVCTGPLYLP K  +GK YV YEVIG + VAVPTHF+K+IV E+ + K
Sbjct: 143 HVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVGESADHK 202
Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
           L ME+YV+PN VIS+ TP++ F V
Sbjct: 203 LHMESYVMPNQVISNDTPISVFQV 226

>pdb|3S5B|A Chain A, Crystal Structure Of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans Length = 249

Iteration: 1
 Score =  246 bits (628), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 151/204 (74%)
Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+G+P   ++R+++DFVLSYD + RTA+WV EHLT E   ++E V+R   EF  D +  
Sbjct: 16  MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFP 75
Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
           + F  +N+DYK SG+DRGHLAAAGNH+ +Q  +DQTF LSN+SPQVG GFNRDKW +LE 
Sbjct: 76  QKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEM 135
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H R++ K+  N Y+ TGPLYLP    +GKKY+ Y+VIGD+NVAVPTHFFK+ + E   GK
Sbjct: 136 HCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGK 195
Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
             +E+Y+LPNAVI D+  ++ F V
Sbjct: 196 FELESYILPNAVIEDTVEISKFHV 219

>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease Length = 335

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 7/208 (3%)
Query: 2   KYGFP-SLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           ++GFP +    R + +  LSYD+  R   WV EH++K         +R   +F  D +I 
Sbjct: 24  QFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGD--ADRKHCKFKPDPNIP 81
Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
             F   N DY  SG+ RGH+A AGN+K + K + +TF LSNI PQ     N   W  +E 
Sbjct: 82  PTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQ-DFDNNSGYWNRIEM 140
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENEN-- 178
           + R+L +++ +V+V +GPL LP    +GKK V+Y+VIG+ NVAVP+H +K+I+A   +  
Sbjct: 141 YCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVS 200
Query: 179 -GKLVMENYVLPNAVISDSTPLTSFMVS 205
              L +  +V+PN  I     LT F VS
Sbjct: 201 TEPLALGAFVVPNEAIGFQPQLTEFQVS 228

>pdb|1ZM8|A Chain A, Apo Crystal Structure Of Nuclease A From Anabaena Sp Length = 259

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 15  DDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE-YFRGRNSDYKYS 73
           + + LSY+    TA WV   L   N+++     R +  F  D ++   + R   S Y  S
Sbjct: 48  NQYALSYNNSKGTANWVAWQL---NSSWLGNAER-QDNFRPDKTLPAGWVRVTPSMYSGS 103
Query: 74  GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVY 133
           GY RGH+A + +     +    TF+++N+ PQ     NR+ W  LE + R+L+ Q   +Y
Sbjct: 104 GYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELY 162
Query: 134 VCTGP---LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
           +  GP   L  P+K   GK            V VP   +KI+V  +  G
Sbjct: 163 IVAGPNGSLGKPLK---GK------------VTVPKSTWKIVVVLDSPG 196

>pdb|2O3B|A Chain A, Crystal Structure Complex Of Nuclease A (Nuca) With Intra-Cellular Inhibitor Nuia Length = 241

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 15  DDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE-YFRGRNSDYKYS 73
           + + LSY+    TA WV   L   N+++     R +  F  D ++   + R   S Y  S
Sbjct: 30  NQYALSYNNSKGTANWVAWQL---NSSWLGNAER-QDNFRPDKTLPAGWVRVTPSMYSGS 85
Query: 74  GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVY 133
           GY RGH+A + +     +    TF+++N+ PQ     NR+ W  LE + R+L+ Q   +Y
Sbjct: 86  GYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELY 144
Query: 134 VCTGP---LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
           +  GP   L  P+K   GK            V VP   +KI+V  +  G
Sbjct: 145 IVAGPNGSLGKPLK---GK------------VTVPKSTWKIVVVLDSPG 178

>pdb|1SMN|A Chain A, Identification Of The Serratia Endonuclease Dimer: Structural Basis And Implications For Catalysis Length = 245

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 17  FVLSYDRRNRTAYWVFEHLTKENTAYSEAVN-RSKSEFFEDDSIHEY-FRGRNSDYKYSG 74
           + L+ +   + A WV  H+TK+  A  +  N ++       D++    + G N+  K   
Sbjct: 28  YTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALK--- 84
Query: 75  YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ--YPNV 132
            DRGH A   +  A     +    LSNI+PQ  +  N+  WA LE   RKL+ +    +V
Sbjct: 85  VDRGHQAPLASL-AGVSDWESLNYLSNITPQ-KSDLNQGAWARLEDQERKLIDRADISSV 142
Query: 133 YVCTGPLY 140
           Y  TGPLY
Sbjct: 143 YTVTGPLY 150

>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic Resolution Length = 241

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 17  FVLSYDRRNRTAYWVFEHLTKENTAYSEAVN-RSKSEFFEDDSIHEY-FRGRNSDYKYSG 74
           + L+ +   + A WV  H+TK+  A  +  N ++       D++    + G N+  K   
Sbjct: 24  YTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALK--- 80
Query: 75  YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ--YPNV 132
            DRGH A   +  A     +    LSNI+PQ  +  N+  WA LE   RKL+ +    +V
Sbjct: 81  VDRGHQAPLASL-AGVSDWESLNYLSNITPQ-KSDLNQGAWARLEDQERKLIDRADISSV 138
Query: 133 YVCTGPLY 140
           Y  TGPLY
Sbjct: 139 YTVTGPLY 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3ism_A	267	CG8862; endonuclease, endonuclease inhibitor compl	2e-78
3s5b_A	249	Endonuclease G; DNA fragmentation, DNAse, protein-	4e-76
4a1n_A	335	Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Ho	2e-65
1g8t_A	245	Nuclease SM2 isoform; endonuclease, hydrolase, mag	4e-48
1zm8_A	259	Nuclease, endonuclease; NUCA, metal dependent, hyd	5e-48
3nkq_A	831	Ectonucleotide pyrophosphatase/phosphodiesterase m	4e-40

>3ism_A CG8862; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster} Length = 267

 Score =  235 bits (601), Expect = 2e-78
 Identities = 131/205 (63%), Positives = 163/205 (79%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MKYGFP LD +RS  D+VLSYDRRNR  +WVFEHLT E+ A ++AV+RSK +F +D+SIH
Sbjct: 23  MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIH 82

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
            +FR +N+DY+ SGYDRGH+AAAGNH+ +QKH D+TF LSN++PQVG GFNRD W  LE 
Sbjct: 83  PFFRSQNTDYRRSGYDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEA 142

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H R+L K Y NVYVCTGPLYLP K  +GK YV YEVIG + VAVPTHF+K+IV E+ + K
Sbjct: 143 HVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVGESADHK 202

Query: 181 LVMENYVLPNAVISDSTPLTSFMVS 205
           L ME+YV+PN VIS+ TP++ F V 
Sbjct: 203 LHMESYVMPNQVISNDTPISVFQVP 227

>3s5b_A Endonuclease G; DNA fragmentation, DNAse, protein-DNA interactions beta-alpha-metal finger nuclease, hydrolase, mitochondria; 1.80A {Caenorhabditis elegans} Length = 249

 Score =  228 bits (583), Expect = 4e-76
 Identities = 113/205 (55%), Positives = 151/205 (73%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
           MK+G+P   ++R+++DFVLSYD + RTA+WV EHLT E   ++E V+R   EF  D +  
Sbjct: 16  MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFP 75

Query: 61  EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
           + F  +N+DYK SG+DRGHLAAAGNH+ +Q  +DQTF LSN+SPQVG GFNRDKW +LE 
Sbjct: 76  QKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEM 135

Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
           H R++ K+  N Y+ TGPLYLP    +GKKY+ Y+VIGD+NVAVPTHFFK+ + E   GK
Sbjct: 136 HCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGK 195

Query: 181 LVMENYVLPNAVISDSTPLTSFMVS 205
             +E+Y+LPNAVI D+  ++ F V 
Sbjct: 196 FELESYILPNAVIEDTVEISKFHVP 220

>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens} Length = 335

 Score =  204 bits (520), Expect = 2e-65
 Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 7/209 (3%)

Query: 1   MKYGFPSL-DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSI 59
            ++GFP      R + +  LSYD+  R   WV EH++K         +R   +F  D +I
Sbjct: 23  EQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGD--ADRKHCKFKPDPNI 80

Query: 60  HEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
              F   N DY  SG+ RGH+A AGN+K + K + +TF LSNI PQ     N   W  +E
Sbjct: 81  PPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDF-DNNSGYWNRIE 139

Query: 120 KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
            + R+L +++ +V+V +GPL LP    +GKK V+Y+VIG+ NVAVP+H +K+I+A   + 
Sbjct: 140 MYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSV 199

Query: 180 ---KLVMENYVLPNAVISDSTPLTSFMVS 205
               L +  +V+PN  I     LT F VS
Sbjct: 200 STEPLALGAFVVPNEAIGFQPQLTEFQVS 228

>1g8t_A Nuclease SM2 isoform; endonuclease, hydrolase, magnesium, signal; 1.10A {Serratia marcescens} SCOP: d.4.1.2 PDB: 1qae_A 1smn_A 1ql0_A Length = 245

 Score =  157 bits (398), Expect = 4e-48
 Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 1   MKYGFPSLDS---LRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDD 57
              G P+  S         + L+ +   + A WV  H+TK+  A     +     +  D 
Sbjct: 9   CAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPA-----SGKTRNWKTDP 63

Query: 58  SIHEYFRGRNSDYKYSG----YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRD 113
           +++       +DY  +      DRGH A   +        +    LSNI+PQ  +  N+ 
Sbjct: 64  ALNPADTLAPADYTGANAALKVDRGHQAPLASLA-GVSDWESLNYLSNITPQK-SDLNQG 121

Query: 114 KWAELEKHSRKLLKQY--PNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSN-VAVPTHFFK 170
            WA LE   RKL+ +    +VY  TGPLY              ++ G      +P+ ++K
Sbjct: 122 AWARLEDQERKLIDRADISSVYTVTGPLYERD---------MGKLPGTQKAHTIPSAYWK 172

Query: 171 IIVAENENGKLVMENYVLPNAVISDSTPLTSFMVS 205
           +I   N         ++              F V+
Sbjct: 173 VIFINNSPAVNHYAAFLFDQN-TPKGADFCQFRVT 206

>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A {Anabaena SP} PDB: 2o3b_A* Length = 259

 Score =  157 bits (398), Expect = 5e-48
 Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 27/214 (12%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
                   + L   + + LSY+    TA WV   L       +E  +     F  D ++ 
Sbjct: 34  TPTKLTPDNYLMVKNQYALSYNNSKGTANWVAWQLNSSWLGNAERQDN----FRPDKTLP 89

Query: 61  E-YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
             + R   S Y  SGY RGH+A + +     +    TF+++N+ PQ     NR+ W  LE
Sbjct: 90  AGWVRVTPSMYSGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQTP-DNNRNTWGNLE 148

Query: 120 KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
            + R+L+ Q   +Y+  GP     K                 V VP   +KI+V  +  G
Sbjct: 149 DYCRELVSQGKELYIVAGPNGSLGK------------PLKGKVTVPKSTWKIVVVLDSPG 196

Query: 180 KLV--------MENYVLPNAVISDSTPLTSFMVS 205
             +        +    +PN    +     ++ VS
Sbjct: 197 SGLEGITANTRVIAVNIPNDPELN-NDWRAYKVS 229

>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A* Length = 831

 Score =  145 bits (365), Expect = 4e-40
 Identities = 36/229 (15%), Positives = 75/229 (32%), Gaps = 28/229 (12%)

Query: 1   MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
               + +   +    DF   Y        W    ++K+    S   + + +    D  + 
Sbjct: 562 PAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLT-NCVRPDVRVS 620

Query: 61  EYFRGRNSDYK-YSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
             F      YK       G L       + +   D  F+++N+ P     F R  W   +
Sbjct: 621 PGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYD-AFLVTNMVPMY-PAFKRV-WTYFQ 677

Query: 120 -KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVN-YEVIGDSNVAVPTHFFKIIVAENE 177
               +K   +   V V +GP++    +          + +  S++ VPTH++ II +  +
Sbjct: 678 RVLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLD 737

Query: 178 N--------GKLVMENYVLPNAVISDST-------------PLTSFMVS 205
                    G L + +++LP+   +D +              +      
Sbjct: 738 FTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTAR 786

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3s5b_A	249	Endonuclease G; DNA fragmentation, DNAse, protein-	100.0
3ism_A	267	CG8862; endonuclease, endonuclease inhibitor compl	100.0
4a1n_A	335	Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Ho	100.0
1zm8_A	259	Nuclease, endonuclease; NUCA, metal dependent, hyd	100.0
1g8t_A	245	Nuclease SM2 isoform; endonuclease, hydrolase, mag	100.0
4gtw_A	823	Ectonucleotide pyrophosphatase/phosphodiesterase m	100.0
3nkq_A	831	Ectonucleotide pyrophosphatase/phosphodiesterase m	100.0
2xgr_A	252	SPD1 nuclease, putative DNAse; hydrolase, metal bi	89.21

>3s5b_A Endonuclease G; DNA fragmentation, DNAse, protein-DNA interactions beta-alpha-metal finger nuclease, hydrolase, mitochondria; 1.80A {Caenorhabditis elegans}

Probab=100.00  E-value=3.6e-69  Score=453.82  Aligned_cols=221  Identities=52%  Similarity=0.874  Sum_probs=202.4

Q ss_pred             CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCccccc
Q psy10887          1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHL   80 (222)
Q Consensus         1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL   80 (222)
                      |+||+|++++|+.+.+|++|||..+++|+||||+|+++.+......+|+.++|++|++||..+|+.++||.+||||||||
T Consensus        16 ~~yG~P~~~~~~~~~~Y~~~yd~~~r~p~Wva~~l~~~~~~~~~~~~R~~~~f~~D~~ip~~~~a~~~dY~~sg~dRGHL   95 (249)
T 3s5b_A           16 MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDYKCSGFDRGHL   95 (249)
T ss_dssp             TTTCCSCCTTEEECSSCEEEEETTTTEEEEEEEEECTTTC-----CCGGGCCCBCCTTSCGGGCCCHHHHTTTTCEEEES
T ss_pred             CCCCCCCccceeecCCEEEEECcccCCeEEEEEEeeHHHccccCCCCCCCCCCCCCCCCChhhhcchhhhcccCCcceee
Confidence            89999999999999999999999999999999999998764334567875689999999999999999999999999999


Q ss_pred             ccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887         81 AAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS  160 (222)
Q Consensus        81 ~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~  160 (222)
                      +|++|+.++++++.+||+||||+||+++.||+|+|+.||+++|+++.++++|||||||+|.++...||+++++++++|++
T Consensus        96 ~p~~d~~~~~~~~~~TF~ltNi~PQ~~~~fN~g~W~~lE~~vr~~a~~~~~v~VvTGp~~~~~~~~dg~~~~~~~~ig~~  175 (249)
T 3s5b_A           96 AAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDN  175 (249)
T ss_dssp             SCGGGCCSCHHHHHHTTBGGGEEEECCCCCCTTHHHHHHHHHHHHHTTSSCEEEEEEEECCEEECTTSCEEEEEEEETTT
T ss_pred             ccccccccCHHHHHhHHHhhhcccccchhhhccHHHHHHHHHHHHHHhCCcEEEEeCceecCCccCCCceEEeeeeccCC
Confidence            99999999988999999999999999559999999999999999999999999999999987655689888888889999


Q ss_pred             cccccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        161 NVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       161 ~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      +|+||+||||||+++..++.+.++|||+||.+...+++|+.|+|+|+|||++|||+||+..
T Consensus       176 ~V~VPt~f~Kvi~~~~~~g~~~~~afv~pn~~~~~~~~l~~~~v~V~~IE~~TGldFf~~l  236 (249)
T 3s5b_A          176 NVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARL  236 (249)
T ss_dssp             TEECCSEEEEEEEEEEETTEEEEEEEEEESSCCCTTCCGGGGBCCHHHHHHHHTCCTTTTS
T ss_pred             CccCchHheEEEEEecCCCcEEEEEEEecCcCCCCCCchhhEEeEHHHHHHHHCCCcCcCC
Confidence            9999999999999988777899999999999877778999999999999999999999863

>3ism_A CG8862; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}

Probab=100.00  E-value=4.5e-68  Score=450.59  Aligned_cols=221  Identities=60%  Similarity=1.024  Sum_probs=205.3

Q ss_pred             CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCccccc
Q psy10887          1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHL   80 (222)
Q Consensus         1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL   80 (222)
                      |+||+|+.++++.+.+|++|||..+++|+||+|+|+++.+......+|+.++|++|++||+.+|+.++||.+||||||||
T Consensus        23 ~~~G~P~~~~~~~~~~y~~~yd~~~r~p~Wva~~l~~~~~~~~~~~~R~~~~F~~D~~ip~~~~a~~~dY~~sg~dRGHL  102 (267)
T 3ism_A           23 MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIHPFFRSQNTDYRRSGYDRGHM  102 (267)
T ss_dssp             TTTCCSCCSSEEECSSCEEEEETTTTEEEEEEEEECTTTTSCCTTCCGGGCCCBCCTTSCGGGCCCHHHHTTTTCEEEES
T ss_pred             eeccCcCccCcccccceEEEEccccCceeEEEEEEcHHHhcccCCCCCCcCCCCcCCCCChhhhcchhhhcccCCccccc
Confidence            79999999999999999999999999999999999998865445678876689999999999999999999999999999


Q ss_pred             ccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887         81 AAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS  160 (222)
Q Consensus        81 ~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~  160 (222)
                      +|++|+.++++++.+||+||||+||+++.||+|+|+.||+++|+++.++++|||||||+|+++...||+++++++++|++
T Consensus       103 ~P~~d~~~~~~a~~~TF~lsNi~PQ~g~~fN~g~W~~lE~~vR~~a~~~~~vyVvTGp~~~~~~~~dg~~~~~~~~ig~~  182 (267)
T 3ism_A          103 AAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEAHVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGAN  182 (267)
T ss_dssp             SCGGGCCSCHHHHHGGGBGGGEEEECCCCCCTTHHHHHHHHHHHGGGTCSEEEEEEEEECCEEECTTSCEEEEEEEETTT
T ss_pred             ccchhcccCHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHhCCcEEEEECCccCCCcCCCCcEEEEeeecCCC
Confidence            99999999988999999999999999779999999999999999999999999999999987655578888888889999


Q ss_pred             cccccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        161 NVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       161 ~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      +|+||+||||||+++..++.+.++|||+||.+....++|++|+|+|++||++|||+||+..
T Consensus       183 ~V~VPt~ffKvv~~~~~~g~~~~~afv~pn~~~~~~~~l~~y~v~V~~IE~~TGldFf~~l  243 (267)
T 3ism_A          183 TVAVPTHFYKVIVGESADHKLHMESYVMPNQVISNDTPISVFQVPPESVERSAGLLFFDQI  243 (267)
T ss_dssp             TEECCSEEEEEEEEECTTSCEEEEEEEEESSCCCTTSCGGGGBCCHHHHHHHHTCCSSTTS
T ss_pred             CccCchHhhEEEEEecCCCcEEEEEEEecCCCCCCCCchhhEEeEHHHHHHHHCCCcCCCC
Confidence            9999999999999998777899999999999877778999999999999999999999863

>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-63  Score=432.85  Aligned_cols=218  Identities=37%  Similarity=0.632  Sum_probs=197.2

Q ss_pred             CCcCCCCC-CcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCcccc
Q psy10887          1 MKYGFPSL-DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGH   79 (222)
Q Consensus         1 ~~~G~P~~-~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGH   79 (222)
                      |+||+|.. ++++.+.+|++|||..+++|+||+|+|++....  ....|+.++|++|++||..+|+.++||.+|||||||
T Consensus        23 ~~~Gfp~~~~~~l~~~~y~~~Yd~~~r~p~Wvay~L~~~~~~--~~~~R~~~~F~~D~~Ip~~~~a~~~dY~~SgydRGH  100 (335)
T 4a1n_A           23 EQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIM--GDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGH  100 (335)
T ss_dssp             TTTCCCCCCCSEEECSSEEEEEETTTTEEEEEEEEECTTTTC--SSCCGGGCCCBCCTTSCTTTCCCHHHHTTTTCEEEE
T ss_pred             EEecccCCCCceeeeccEEEEECcccCCeEEEEEEEeHHHcc--CCCCCCCCCCCCCCCCCcccccchhhhcCCCcceee
Confidence            79999997 588999999999999999999999999988753  345676568999999999999999999999999999


Q ss_pred             cccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCC
Q psy10887         80 LAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGD  159 (222)
Q Consensus        80 L~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~  159 (222)
                      |+|++|+.++.+++.+||+||||+||+ +.||+|+|++||+++|+++.+.++|||||||+|+++...||++++.+.++|+
T Consensus       101 LaP~aD~~~s~~a~~~TF~lsNi~PQ~-~~fN~g~W~~LE~~vR~~a~~~~~vyVvTGplf~p~~~~dG~~~~~y~~ig~  179 (335)
T 4a1n_A          101 MAPAGNNKFSSKAMAETFYLSNIVPQD-FDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGE  179 (335)
T ss_dssp             SSCGGGCTTCHHHHHHTTBGGGEEEEC-HHHHHTHHHHHHHHHHHGGGTCSEEEEEEEEECCCEECTTSCEECCCCEETT
T ss_pred             eccccccCCCHHHHHHHHHHhhhcccc-cccccChHHHHHHHHHHHHhhCCcEEEEECccccCcccCCCceeeeEEeecC
Confidence            999999999988899999999999999 9999999999999999999999999999999998865557887666678898


Q ss_pred             CcccccccceEEEEEecCC---CceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        160 SNVAVPTHFFKIIVAENEN---GKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       160 ~~v~VP~~f~Kvv~~~~~~---~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                      ++|+||+||||||+++..+   +.+.+.|||+||.+...+.+|+.|+|||++||++|||+||+..
T Consensus       180 ~~V~VPt~ffKVv~~~~~~~~~~~~a~~Afv~PN~~~~~~~~l~~y~VsV~dIE~~TGLdFf~~L  244 (335)
T 4a1n_A          180 DNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHL  244 (335)
T ss_dssp             TTEECCSEEEEEEEEESCSSCCSCEEEEEEEEESSCCCSSSCGGGGEECHHHHHHHHTCCCSTTS
T ss_pred             CCccCchHhhEEEEEecCCCCCCceEEEEEEecCCCcCCCCcHhheeeeHHHHHHHHCCCcccCC
Confidence            9999999999999998753   2456779999999876677899999999999999999999863

>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A {Anabaena SP} PDB: 2o3b_A*

Probab=100.00  E-value=5.1e-61  Score=406.42  Aligned_cols=203  Identities=27%  Similarity=0.385  Sum_probs=182.8

Q ss_pred             CCcCCCCCC---------cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCcc-ccccCCCC
Q psy10887          1 MKYGFPSLD---------SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEY-FRGRNSDY   70 (222)
Q Consensus         1 ~~~G~P~~~---------~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~-~q~~~~dY   70 (222)
                      |++|+|+..         ++|++.+|++|||..+++|+||+|+|++...   +..+|+ ++|++|++||.. +|+.++||
T Consensus        25 l~~G~P~~~~~~~~~~~~~ll~~~~y~~~yd~~~r~p~wva~~l~~~~~---~~~~R~-~~f~~D~~ip~~~~~~~~~dY  100 (259)
T 1zm8_A           25 LLLGNPSGATPTKLTPDNYLMVKNQYALSYNNSKGTANWVAWQLNSSWL---GNAERQ-DNFRPDKTLPAGWVRVTPSMY  100 (259)
T ss_dssp             GTTCCTTCCBSCTTSTTSEEEECSSCEEEEETTTTEEEEEEEEESGGGC---CSCCCC-CCCBCCTTSCTTSCCCCGGGT
T ss_pred             cCCCCCCCCCccccCCcceEEecCCEEEEEccCCCcEEEEEEEEeHHhc---CCCCCC-cCCccCCCCcccccccchhhh
Confidence            689999964         3999999999999999999999999998543   356787 799999999997 89999999


Q ss_pred             ccCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCce
Q psy10887         71 KYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKK  150 (222)
Q Consensus        71 ~~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~  150 (222)
                      .+||||||||+|++|+.++++++.+||+||||+||+ +.||+|+|++||+++|++++++++|||||||++..     |  
T Consensus       101 ~~sg~dRGHL~P~ad~~~s~~a~~~TF~lsNi~PQ~-~~fN~g~W~~lE~~vr~~a~~~~~v~VvTGp~~~~-----g--  172 (259)
T 1zm8_A          101 SGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELYIVAGPNGSL-----G--  172 (259)
T ss_dssp             TTSSCEEEESSCGGGCCSSHHHHHHTTBGGGEEEEC-HHHHHTHHHHHHHHHHHHHHHTCCEEEEEEEESCC-----S--
T ss_pred             cccCCcccccccccccccCHHHHHHHHHHhhcccch-hhHhHHHHHHHHHHHHHHHHhCCcEEEEECcccCC-----C--
Confidence            999999999999999999988999999999999999 99999999999999999999999999999999853     2  


Q ss_pred             eeeeeeeCCCcccccccceEEEEEecCCC--------ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        151 YVNYEVIGDSNVAVPTHFFKIIVAENENG--------KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       151 ~~~~~~~g~~~v~VP~~f~Kvv~~~~~~~--------~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                           .+++++|+||+||||||+++..++        .+.++|||+||.+... .+|+.|+|||+|||++|||+||+..
T Consensus       173 -----~i~~~~V~VP~~f~Kvv~~~~~~~~~~~~~~~~~~~~afv~pn~~~~~-~~l~~~~vsV~~iE~~TGl~Ff~~l  245 (259)
T 1zm8_A          173 -----KPLKGKVTVPKSTWKIVVVLDSPGSGLEGITANTRVIAVNIPNDPELN-NDWRAYKVSVDELESLTGYDFLSNV  245 (259)
T ss_dssp             -----SCBTTTBCCCSEEEEEEEECSSTTCGGGGCCTTCCEEEEEEECCSSCC-SCGGGGBCCHHHHHHHHCCCTTTTS
T ss_pred             -----cCCCCceeCChHHhEEEEEccCCCcccccccCCceEEEEEcCCCcccC-CchheeeeEHHHHHHHHCCCcCCCC
Confidence                 245678999999999999987642        5789999999998653 4899999999999999999999864

>1g8t_A Nuclease SM2 isoform; endonuclease, hydrolase, magnesium, signal; 1.10A {Serratia marcescens} SCOP: d.4.1.2 PDB: 1qae_A 1smn_A 1ql0_A

Probab=100.00  E-value=1.4e-59  Score=395.18  Aligned_cols=204  Identities=24%  Similarity=0.380  Sum_probs=179.7

Q ss_pred             CCcCCCC---CCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccC----
Q psy10887          1 MKYGFPS---LDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYS----   73 (222)
Q Consensus         1 ~~~G~P~---~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~s----   73 (222)
                      |+||+|+   .+++|.+..|++|||..+++|+||+|+|+++...    ..|+ ++|++|++||..+|+.++||.++    
T Consensus         9 ~~~G~P~~~~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~----~~r~-~~f~~D~~i~~~~~~~~~dY~~s~~~~   83 (245)
T 1g8t_A            9 CAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPA----SGKT-RNWKTDPALNPADTLAPADYTGANAAL   83 (245)
T ss_dssp             SSSCCCBCCSCSSCEECSSCEEEECTTTSSEEEEEEEECTTSCC----CSCC-CCCBCCTTSCGGGSCCGGGGTTHHHHH
T ss_pred             CCCCCCCCCCCCceEeeCcEEEEEccccCcEEEEEEEEEhhhcC----CCCC-CCCcCCCCCChHhccCHHHhcCCcccc
Confidence            6899999   4689999999999999999999999999998753    2565 68999999999999999999998    


Q ss_pred             CCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCC--CEEEEEcccccCCCCCCCcee
Q psy10887         74 GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYP--NVYVCTGPLYLPMKSPNGKKY  151 (222)
Q Consensus        74 g~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~--~l~VvtG~~~~~~~~~~g~~~  151 (222)
                      |||||||+|++|+.++ +++.+||+||||+||+ +.||+|+|++||+++|+++.+.+  +|||||||+|.++.   +.  
T Consensus        84 g~dRGHL~P~ad~~~~-~~~~~TF~lsNi~PQ~-~~fN~g~W~~lE~~vR~~a~~~~~~~v~VvTGp~~~~~~---~~--  156 (245)
T 1g8t_A           84 KVDRGHQAPLASLAGV-SDWESLNYLSNITPQK-SDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDM---GK--  156 (245)
T ss_dssp             CEEEEESSCHHHHTTS-TTGGGGGBGGGEEEEE-HHHHTTHHHHHHHHHHHGGGSTTCCCEEEEEEEECCSCC---CC--
T ss_pred             cccccCcCcccccccH-HHHHHHHHHHHhccch-hhHhHHHHHHHHHHHHHHHHhCCCCeEEEEeCceecCCC---ce--
Confidence            9999999999998775 5789999999999999 99999999999999999998866  99999999997542   21  


Q ss_pred             eeeeeeCCCccc-ccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887        152 VNYEVIGDSNVA-VPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF  221 (222)
Q Consensus       152 ~~~~~~g~~~v~-VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~  221 (222)
                          ..++++|. ||+||||||++++.+++..++|||+||+. ....+|..|+|||+|||++|||+||+..
T Consensus       157 ----~~~~~~v~pVP~~f~Kvv~~~~~~~~~~~~afv~pn~~-~~~~~l~~~~vsv~~iE~~TGl~Ff~~l  222 (245)
T 1g8t_A          157 ----LPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNT-PKGADFCQFRVTVDEIEKRTGLIIWAGL  222 (245)
T ss_dssp             ----CTTCCSCCCCCSEEEEEEEETTCTTTBCEEEEEEETTC-CTTCCGGGGBCCHHHHHHHHSCBSSTTS
T ss_pred             ----ecCCCCeeeCChhheEEEEEccCCCCeeEEEEEecCCC-ccccccceeeeeHHHHHHHHCCCcCcCC
Confidence                23455675 99999999999876666789999999975 3456799999999999999999999864

>4gtw_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2, alkaline phosphodiesterase...; bone mineralization, hydrolase; HET: NAG BMA MAN AMP; 2.70A {Mus musculus} PDB: 4gtx_A* 4gty_A* 4gtz_A* 4b56_A*

Probab=100.00  E-value=4.5e-53  Score=407.61  Aligned_cols=215  Identities=18%  Similarity=0.214  Sum_probs=179.3

Q ss_pred             CCcCCCCC------CcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCc-cC
Q psy10887          1 MKYGFPSL------DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYK-YS   73 (222)
Q Consensus         1 ~~~G~P~~------~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~-~s   73 (222)
                      ++||+|+.      .+||.+..|+++||..+++|+||+|+|++....  ....|+ ++|++|++||..+++.++||. +|
T Consensus       555 ~p~g~p~~~~~~~~~~ll~~~~y~~~y~~~~~~p~Wv~~~l~~~~~~--~~~~r~-~~f~~D~~ip~~~~~~~~~y~~~s  631 (823)
T 4gtw_A          555 VPYGRPRILLKQHRVCLLQQQQFLTGYSLDLLMPLWASYTFLSNDQF--SRDDFS-NCLYQDLRIPLSPVHKCSYYKSNS  631 (823)
T ss_dssp             CTTCCCEECCSSCEEEEEECSSEEEEEETTTTEEEEEEEEECSCC---------C-CCCBCCTTSCCCTTSSGGGCCSSS
T ss_pred             CCCCCCcccccCCceEEEeehhhhhhhhhhcCCeeeEEEEecchhcC--CCcccC-cCcccCCCCCccccccchhhccCC
Confidence            68999984      269999999999999999999999999998763  345676 689999999999999999996 69


Q ss_pred             CCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCc----
Q psy10887         74 GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGK----  149 (222)
Q Consensus        74 g~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~----  149 (222)
                      |||||||+|++|+.++++++.+||+||||+||. +.||++.|..||.++|+|+++.++|||||||+|+++.  ||.    
T Consensus       632 g~drGHl~P~~d~~~s~~~~~~tf~~sNi~Pq~-~~fn~~~w~~lE~~~r~~~~~~~~v~VvtGpifd~~~--dg~~d~~  708 (823)
T 4gtw_A          632 KLSYGFLTPPRLNRVSNHIYSEALLTSNIVPMY-QSFQVIWHYLHDTLLQRYAHERNGINVVSGPVFDFDY--DGRYDSL  708 (823)
T ss_dssp             SEEEEESSCTTCC----CCCSGGGBGGGEEEEE-HHHHHHHHHHHHTHHHHHHHHTTCEEEEEEEECCTTC--SSSCCCH
T ss_pred             CcceeccCChhhcccCHHHHHHHHHHHHcccch-HhHhHHHHHHHHHHHHHHHHhCCcEEEEeCcccccCC--CCccCCc
Confidence            999999999999999999999999999999999 9999999999999999999999999999999997643  332    


Q ss_pred             --eeeeeeeeCCCcccccccceEEEEEecCC-------CceEEEEEEEeCCCCCCC-------------CCccccccChH
Q psy10887        150 --KYVNYEVIGDSNVAVPTHFFKIIVAENEN-------GKLVMENYVLPNAVISDS-------------TPLTSFMVSTY  207 (222)
Q Consensus       150 --~~~~~~~~g~~~v~VP~~f~Kvv~~~~~~-------~~~~~~afv~pN~~~~~~-------------~~l~~~~v~v~  207 (222)
                        .......+|+++|+||+||||||+.+++.       +.++++|||+||.+....             +.|..|+|+|+
T Consensus       709 ~~~~~~~~~i~~~~v~VPthffkvi~~~~~~~~~~~~~~~~~~~aFi~Pn~~~~~~~~~~~~~~~~~~~~~l~~~~~sV~  788 (823)
T 4gtw_A          709 EILKQNSRVIRSQEILIPTHFFIVLTSCKQLSETPLECSALESSAYILPHRPDNIESCTHGKRESSWVEELLTLHRARVT  788 (823)
T ss_dssp             HHHHHTCEEETTEEECCCSEEEEEEEEESSTTSCTTSCSSEEEEEEEEECCSSCTTTTCTTCCHHHHHHHHHHHTEECHH
T ss_pred             ccccccceeecCCcccCCCeeEEEEEEccCCCcCCCCCCCeeEEEEEecCCCCCccccccccccchhhhhHHHhccccHH
Confidence              11223567888999999999999987652       358999999999875322             23788999999


Q ss_pred             HHHHHhcCcccccc
Q psy10887        208 LLKCSYIINLLIMF  221 (222)
Q Consensus       208 ~IE~~tGl~ff~~~  221 (222)
                      |||++|||+||+..
T Consensus       789 diE~~TGl~Ff~~l  802 (823)
T 4gtw_A          789 DVELITGLSFYQDR  802 (823)
T ss_dssp             HHHHHHTEECCTTC
T ss_pred             HHHHHhCccccCCC
Confidence            99999999999863

>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*

Probab=100.00  E-value=1.4e-52  Score=403.38  Aligned_cols=213  Identities=19%  Similarity=0.305  Sum_probs=183.3

Q ss_pred             CCcCCCCCC-----cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccC-C
Q psy10887          1 MKYGFPSLD-----SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYS-G   74 (222)
Q Consensus         1 ~~~G~P~~~-----~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~s-g   74 (222)
                      |+||+|+..     +||.+.+|+++||..+++|+||+|+|++..........|+ ++|++|++||..+|+.++||++| |
T Consensus       557 l~~G~P~~~~~~~~~ll~~~~y~~~y~~~~r~p~Wvay~l~~~~~~~~~~~~r~-~~f~~D~~ip~~~~~~~~dY~~s~g  635 (831)
T 3nkq_A          557 LLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLT-NCVRPDVRVSPGFSQNCLAYKNDKQ  635 (831)
T ss_dssp             CTTCCCEECSSCCEEEEECSSCEEEEETTTTEEEEEEEEECTTCCCCCCCGGGT-TCCBCCTTSCGGGSCCHHHHHHCSS
T ss_pred             eecCCCccccccceeEEeccceEEEeccccCceeEEEEEEcHHHccCCCCCccC-CCceeCCCCChHhcCChhhhcCCCC
Confidence            799999963     4899999999999999999999999999764322234565 68999999999999999999999 9


Q ss_pred             CcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHH-HHHHhcCCCEEEEEcccccCCCCCCCce---
Q psy10887         75 YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHS-RKLLKQYPNVYVCTGPLYLPMKSPNGKK---  150 (222)
Q Consensus        75 ~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~v-r~~~~~~~~l~VvtG~~~~~~~~~~g~~---  150 (222)
                      ||||||+|++|+..+ +++.+||+||||+||+ +.||+ +|++||+.+ |+++++.++|||||||+|+++.  ||+.   
T Consensus       636 ~dRGHl~p~~d~~~~-~~~~~tf~~sNi~PQ~-~~fN~-~W~~lE~~~~r~~~~~~~~v~VvtGpi~~~~~--dg~~d~~  710 (831)
T 3nkq_A          636 MSYGFLFPPYLSSSP-EAKYDAFLVTNMVPMY-PAFKR-VWTYFQRVLVKKYASERNGVNVISGPIFDYNY--NGLRDIE  710 (831)
T ss_dssp             CEEEESSCGGGCSST-TTHHHHTBGGGEEEEC-HHHHH-HHHHHHHTHHHHHHHHHTSEEEEEEEECCTTC--SSSCCCG
T ss_pred             cCceecCCcccCcch-HHHHHHHHHHhhcccc-hHHHH-HHHHHHHHHHHHHHHhCCCEEEEeCcccCCCc--CCccCcc
Confidence            999999999999876 4667999999999999 99999 999999997 9999999999999999998653  4432   


Q ss_pred             -eeeeeeeCCCcccccccceEEEEEecC--------CCceEEEEEEEeCCCCCC-------------CCCccccccChHH
Q psy10887        151 -YVNYEVIGDSNVAVPTHFFKIIVAENE--------NGKLVMENYVLPNAVISD-------------STPLTSFMVSTYL  208 (222)
Q Consensus       151 -~~~~~~~g~~~v~VP~~f~Kvv~~~~~--------~~~~~~~afv~pN~~~~~-------------~~~l~~~~v~v~~  208 (222)
                       .++ +.+|+++|+||+||||||+.++.        ++.++++|||+||.+...             +++|..|+|+|+|
T Consensus       711 ~~i~-~~ig~~~v~VPt~ffKvi~~~~~~~~~~~~~~g~~~~~afv~pn~~~~~~~c~~~~~~~~wv~~~l~~~~v~V~~  789 (831)
T 3nkq_A          711 DEIK-QYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRD  789 (831)
T ss_dssp             GGCC-CBSTTSCCBCCSEEEEEEEEESSTTSCGGGCCSCEEEEEEEEECCSSCTTCTTTTSCGGGTHHHHHHHTEECHHH
T ss_pred             hhee-eecCCCCcCChhHhheEEEEcccCCcCcccCCCceEEEEEEecCCCCccccccccccccccccchHhheeccHHH
Confidence             232 46777899999999999998654        356899999999998643             1357899999999


Q ss_pred             HHHHhcCccccc
Q psy10887        209 LKCSYIINLLIM  220 (222)
Q Consensus       209 IE~~tGl~ff~~  220 (222)
                      ||++|||+||++
T Consensus       790 IE~~TGldFf~~  801 (831)
T 3nkq_A          790 IEHLTGLDFYRK  801 (831)
T ss_dssp             HHHHHCEECCCS
T ss_pred             HHHHhCcCcccC
Confidence            999999999986

>2xgr_A SPD1 nuclease, putative DNAse; hydrolase, metal binding; 1.70A {Streptococcus pyogenes serotype M1} PDB: 2xh3_A

Probab=89.21  E-value=0.5  Score=38.93  Aligned_cols=62  Identities=18%  Similarity=0.025  Sum_probs=41.1

Q ss_pred             cCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCch-----------hHHHHHHHHHHHHHhc--CCCEEEEEcc
Q psy10887         72 YSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNR-----------DKWAELEKHSRKLLKQ--YPNVYVCTGP  138 (222)
Q Consensus        72 ~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~-----------g~W~~lE~~vr~~~~~--~~~l~VvtG~  138 (222)
                      +--|+||||.+-.-.  +.  +   --.-|++||- +-+|+           +-....|+.|+++.+.  ...|..-.=|
T Consensus       114 ~~l~NRgHLIgyqL~--G~--n---~n~kNLvT~T-r~~N~G~~~~~~~~n~~gM~yyE~~V~~~l~~~~n~~V~YrVTP  185 (252)
T 2xgr_A          114 SWVMNRGHLVGYQFC--GL--N---DEPRNLVAMT-AWLNTGAYSGANDSNPEGMLYYENRLDSWLALHPDFWLDYKVTP  185 (252)
T ss_dssp             -CBCCEEESSCHHHH--CC--S---SCGGGEEECC-HHHHHSSSSSCCTTCTTSHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred             ccccccceEEEEecc--CC--C---CCccceeecc-hhhcccccccccccCcchhHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            345899999875311  11  1   1235899997 76776           4567999999998765  3456555668


Q ss_pred             ccc
Q psy10887        139 LYL  141 (222)
Q Consensus       139 ~~~  141 (222)
                      ||.
T Consensus       186 IY~  188 (252)
T 2xgr_A          186 IYS  188 (252)
T ss_dssp             ECC
T ss_pred             eec
Confidence            884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1g8ta_	241	d.4.1.2 (A:) Sm endonuclease {Serratia marcescens	8e-40
d2o3ba1	240	d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PC	3e-36

>d1g8ta_ d.4.1.2 (A:) Sm endonuclease {Serratia marcescens [TaxId: 615]} Length = 241

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: DNA/RNA non-specific endonuclease
domain: Sm endonuclease
species: Serratia marcescens [TaxId: 615]

 Score =  134 bits (339), Expect = 8e-40
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 27/215 (12%)

Query: 1   MKYGFPSLDS---LRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDD 57
              G P+  S         + L+ +   + A WV  H+TK+  A     +     +  D 
Sbjct: 5   CAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPA-----SGKTRNWKTDP 59

Query: 58  SIHEYFRGRNSDYKYSG----YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRD 113
           +++       +DY  +      DRGH A   +        +    LSNI+PQ     N+ 
Sbjct: 60  ALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSD-WESLNYLSNITPQKSD-LNQG 117

Query: 114 KWAELEKHSRKLLKQ--YPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSN-VAVPTHFFK 170
            WA LE   RKL+ +    +VY  TGPLY              ++ G      +P+ ++K
Sbjct: 118 AWARLEDQERKLIDRADISSVYTVTGPLYERD---------MGKLPGTQKAHTIPSAYWK 168

Query: 171 IIVAENENGKLVMENYVLPNAVISDSTPLTSFMVS 205
           +I   N         ++              F V+
Sbjct: 169 VIFINNSPAVNHYAAFLFDQN-TPKGADFCQFRVT 202

>d2o3ba1 d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PCC 7120 [TaxId: 1167]} Length = 240

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: DNA/RNA non-specific endonuclease
domain: Nuclease NucA
species: Anabaena sp., PCC 7120 [TaxId: 1167]

 Score =  125 bits (315), Expect = 3e-36
 Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 27/204 (13%)

Query: 11  LRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYF-RGRNSD 69
           L   + + LSY+    TA WV   L              +  F  D ++   + R   S 
Sbjct: 25  LMVKNQYALSYNNSKGTANWVAWQLNSSWLGN----AERQDNFRPDKTLPAGWVRVTPSM 80

Query: 70  YKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQY 129
           Y  SGY RGH+A + +     +    TF+++N+ PQ     NR+ W  LE + R+L+ Q 
Sbjct: 81  YSGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQTPD-NNRNTWGNLEDYCRELVSQG 139

Query: 130 PNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG--------KL 181
             +Y+  GP     K   G             V VP   +KI+V  +  G          
Sbjct: 140 KELYIVAGPNGSLGKPLKG------------KVTVPKSTWKIVVVLDSPGSGLEGITANT 187

Query: 182 VMENYVLPNAVISDSTPLTSFMVS 205
            +    +PN     +    ++ VS
Sbjct: 188 RVIAVNIPNDP-ELNNDWRAYKVS 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2o3ba1	240	Nuclease NucA {Anabaena sp., PCC 7120 [TaxId: 1167	100.0
d1g8ta_	241	Sm endonuclease {Serratia marcescens [TaxId: 615]}	100.0

>d2o3ba1 d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PCC 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: DNA/RNA non-specific endonuclease
domain: Nuclease NucA
species: Anabaena sp., PCC 7120 [TaxId: 1167]

Probab=100.00  E-value=6.9e-59  Score=387.39  Aligned_cols=202  Identities=27%  Similarity=0.378  Sum_probs=179.2

Q ss_pred             CCcCCCCCC---------cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccc-cccCCCC
Q psy10887          1 MKYGFPSLD---------SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYF-RGRNSDY   70 (222)
Q Consensus         1 ~~~G~P~~~---------~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~-q~~~~dY   70 (222)
                      |++|.|+..         +||.+..|+++||..+++|+||||+|+++.+   +..+|+ ++|++|++||..+ |+..+||
T Consensus         6 l~~g~Ps~~~~~~~~~~~~ll~~~~Y~~~yd~~~~~p~Wvay~l~~~~~---~~~~r~-~~f~~D~~lp~~~~~~~~~dY   81 (240)
T d2o3ba1           6 LLLGNPSGATPTKLTPDNYLMVKNQYALSYNNSKGTANWVAWQLNSSWL---GNAERQ-DNFRPDKTLPAGWVRVTPSMY   81 (240)
T ss_dssp             GTTCCTTCCBSCTTSTTSEEEECSSCEEEEETTTTEEEEEEEEESGGGC---CSCCCC-CCCBCCTTSCTTSCCCCGGGG
T ss_pred             ccCCCCCCCCcCCCCCCcEEEEcCceEEEECCCCCCEEEEEEEEEHHhc---CCCCCC-CCCccCCCCchhhhhcCHHHh
Confidence            578999852         3899999999999999999999999998775   345676 6899999999775 6778899


Q ss_pred             ccCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCce
Q psy10887         71 KYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKK  150 (222)
Q Consensus        71 ~~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~  150 (222)
                      .++|||||||+|++|+.++.+++.+||+||||+||. +.||+|+|+.||.++|+++.++++|||||||++....      
T Consensus        82 ~~sgydRGHlap~~~~~~~~~~~~~Tf~~sN~~PQ~-~~~N~g~W~~LE~~vr~~~~~~~~v~VitGp~~~~~~------  154 (240)
T d2o3ba1          82 SGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELYIVAGPNGSLGK------  154 (240)
T ss_dssp             TTSSCEEEESSCGGGCCSSHHHHHHTTBGGGEEEEC-HHHHHTHHHHHHHHHHHHHHTTCEEEEEEEEESCCSS------
T ss_pred             ccCCccccccCchhhhhhhHHHHHHHhhhccccCcc-chhccchHHHHHHHHHHHHHhCCceEEEEcCCCCCCc------
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999986532      


Q ss_pred             eeeeeeeCCCcccccccceEEEEEecCCC--------ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCccccc
Q psy10887        151 YVNYEVIGDSNVAVPTHFFKIIVAENENG--------KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIM  220 (222)
Q Consensus       151 ~~~~~~~g~~~v~VP~~f~Kvv~~~~~~~--------~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~  220 (222)
                            ...++|+||++|||||+++..++        ..+++||+|||++. ...+++.|+|||++||++|||+||+.
T Consensus       155 ------~~~~~v~VP~~f~Kvv~~~~~~g~~~~~~~~~~~~~af~ipn~~~-~~~~l~~~~vsi~~IE~~TGl~Ff~~  225 (240)
T d2o3ba1         155 ------PLKGKVTVPKSTWKIVVVLDSPGSGLEGITANTRVIAVNIPNDPE-LNNDWRAYKVSVDELESLTGYDFLSN  225 (240)
T ss_dssp             ------CBTTTBCCCSEEEEEEEEESSTTCGGGGCCTTCEEEEEEEECCSS-CCSCGGGGBCCHHHHHHHHCCCTTTT
T ss_pred             ------cccccEeCChhhEEEEEEecCCCcccccccccceEEEEecCCCcc-cCCccceeeccHHHHHHHHCCCcccC
Confidence                  12367999999999999987643        35899999999874 34589999999999999999999975

>d1g8ta_ d.4.1.2 (A:) Sm endonuclease {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: DNA/RNA non-specific endonuclease
domain: Sm endonuclease
species: Serratia marcescens [TaxId: 615]

Probab=100.00  E-value=2.3e-56  Score=372.39  Aligned_cols=202  Identities=23%  Similarity=0.370  Sum_probs=176.3

Q ss_pred             CcCCCCC---CcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCC----
Q psy10887          2 KYGFPSL---DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSG----   74 (222)
Q Consensus         2 ~~G~P~~---~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg----   74 (222)
                      +||+|..   +.+|.+..|+++||..+++|+||||+|+++.+.    ..|+ .+|+.|++||..+|+.++||++||    
T Consensus         6 ~~g~P~~~~~~~~i~r~~Y~~~yd~~~k~p~Wvay~l~~~~~~----~~~~-~~f~~D~~lp~~~~~~~~dY~~sg~~~~   80 (241)
T d1g8ta_           6 AVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPA----SGKT-RNWKTDPALNPADTLAPADYTGANAALK   80 (241)
T ss_dssp             SSCCCBCCSCSSCEECSSCEEEECTTTSSEEEEEEEECTTSCC----CSCC-CCCBCCTTSCGGGSCCGGGGTTHHHHHC
T ss_pred             cCCCCCCCCCCEEEEeccEEEEEcCCCCCEEEEEEEeehhhcc----cccc-cccccCcccchhcccchhhhcccccccc
Confidence            6899963   579999999999999999999999999988753    2455 589999999999999999999997    


Q ss_pred             CcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhc--CCCEEEEEcccccCCCCCCCceee
Q psy10887         75 YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ--YPNVYVCTGPLYLPMKSPNGKKYV  152 (222)
Q Consensus        75 ~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~--~~~l~VvtG~~~~~~~~~~g~~~~  152 (222)
                      ||||||+|++|+..+. ++.+||+||||+||+ +.||+|+|..||.++|+++.+  .++|||||||+|.+...       
T Consensus        81 yDRGHlaP~~~~~~~~-~~~~tf~~sNi~PQ~-~~fN~g~W~~LE~~vr~~a~~~~~~~v~VvtGpi~~~~~~-------  151 (241)
T d1g8ta_          81 VDRGHQAPLASLAGVS-DWESLNYLSNITPQK-SDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDMG-------  151 (241)
T ss_dssp             EEEEESSCHHHHTTST-TGGGGGBGGGEEEEE-HHHHTTHHHHHHHHHHHGGGSTTCCCEEEEEEEECCSCCC-------
T ss_pred             cchhhcCCccccccHH-HHHHHhhhhccCCcc-cccccChHHHHHHHHHHHHHhcCCcceEEEEeccccCCCc-------
Confidence            9999999999997764 689999999999999 999999999999999999976  47999999999975421       


Q ss_pred             eeeeeC-CCcccccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCccccc
Q psy10887        153 NYEVIG-DSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIM  220 (222)
Q Consensus       153 ~~~~~g-~~~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~  220 (222)
                        ...+ ++.|+||++|||||+..+.++...++||++||+. ....+|.+|+|||++||++|||+||+.
T Consensus       152 --~~~~~~~~v~VP~~ffKvv~~~~~~~~~~~~af~~~~~~-~~~~~l~~y~vsv~~IE~~TGl~Ff~~  217 (241)
T d1g8ta_         152 --KLPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNT-PKGADFCQFRVTVDEIEKRTGLIIWAG  217 (241)
T ss_dssp             --CCTTCCSCCCCCSEEEEEEEETTCTTTBCEEEEEEETTC-CTTCCGGGGBCCHHHHHHHHSCBSSTT
T ss_pred             --eEecCCcceecChhHEEEEEEecCCCceEEEEEEecCCC-CCCCccccccccHHHHHHHHCCCcccC
Confidence              1222 3569999999999999877667789999999985 345689999999999999999999974