Psyllid ID: psy10891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVEKKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEccHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccc
Coil and Loop (DISEMBL)
mtegqerfTWMTRVYYkdahgciimfdltnqnsfkntlkwkkdvdlkctlsdgspipcmllankcdlphrqvdindiecfykehnfigwtetstkeglmvnDSMKFLLDVLMRQeglqnfpnnddenmvklsgpapkvekke
Flexible Loop (DISEMBL)
mtegqerfTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTetstkeglmVNDSMKFLLDVLMRQEGLQnfpnnddenmvklsgpapkvekke
Low Complexity Region (SEG)
MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVEKKE
Disordered region (IsUnstruct)
******RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ****************************
Disordered Region (DISOPRED)
MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL*******************************
Disordered Region (DISEMBL)
MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLS**********
Disordered Region (DISPRO)
*****ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVEKKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q5R7A4	203	Ras-related protein Rab-7	yes	N/A	0.774	0.541	0.545	4e-32
O14966	203	Ras-related protein Rab-7	no	N/A	0.774	0.541	0.545	4e-32
Q91YQ1	204	Ras-related protein Rab-7	yes	N/A	0.845	0.588	0.488	6e-31
Q63481	204	Ras-related protein Rab-7	yes	N/A	0.936	0.651	0.462	1e-30
Q06AU5	226	Ras-related protein Rab-3	no	N/A	0.957	0.601	0.417	1e-25
Q13637	225	Ras-related protein Rab-3	no	N/A	0.957	0.604	0.421	1e-25
Q9CZE3	223	Ras-related protein Rab-3	no	N/A	0.957	0.609	0.4	2e-24
Q54QR3	219	Ras-related protein Rab-3	yes	N/A	0.830	0.538	0.454	5e-24
Q55E31	260	Ras-related protein Rab-3	no	N/A	0.901	0.492	0.410	5e-22
Q8QZZ8	211	Ras-related protein Rab-3	no	N/A	0.929	0.625	0.405	1e-21

>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 82/110 (74%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           KCDL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +MR
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175

Pongo abelii (taxid: 9601)

>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 82/110 (74%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           KCDL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +MR
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175

Homo sapiens (taxid: 9606)

>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 87/129 (67%), Gaps = 9/129 (6%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL  G P+PC+LLAN
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           K DL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +M         NN
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMM---------NN 176

Query: 124 DDENMVKLS 132
             E+++ LS
Sbjct: 177 SREDVMSLS 185

Mus musculus (taxid: 10090)

>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 1/134 (0%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL  G P+PC+LLAN
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           K DL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +M         ++
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSS 185

Query: 124 DDENMVKL-SGPAP 136
              N + L + P+P
Sbjct: 186 TQGNYINLQTKPSP 199

Rattus norvegicus (taxid: 10116)

>sp|Q06AU5|RAB32_PIG Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 90/139 (64%), Gaps = 3/139 (2%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERF  MTRVYYK+A G +++FD++  + F+  LKWK D+D K  L +GSPIP +LLAN
Sbjct: 86  GQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLAN 145

Query: 64  KCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
           KCD       + + ++ F KEH F GW ETS K+ + ++++ +FL++ ++     Q+FP+
Sbjct: 146 KCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANH--QSFPS 203

Query: 123 NDDENMVKLSGPAPKVEKK 141
            +++  +KL     K E K
Sbjct: 204 EENDGRIKLDEETMKKENK 222

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Sus scrofa (taxid: 9823)

>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 88/140 (62%), Gaps = 4/140 (2%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERF  MTRVYYK+A G  ++FD++  ++F+  LKWK D+D K  L +GSPIP +LLAN
Sbjct: 84  GQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLAN 143

Query: 64  KCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
           KCD         + ++ F KEH F GW ETS K+ + + ++ +FL++ ++     Q+FPN
Sbjct: 144 KCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNH--QSFPN 201

Query: 123 ND-DENMVKLSGPAPKVEKK 141
            + D + +KL     + E K
Sbjct: 202 EENDVDKIKLDQETLRAENK 221

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Homo sapiens (taxid: 9606)

>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 89/140 (63%), Gaps = 4/140 (2%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERF  MTRVYYK+A G  ++FD++  ++F   LKWK D+D K  L +GSPIP +LLAN
Sbjct: 82  GQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLAN 141

Query: 64  KCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
           KCD         + ++ F K+H F GW ETS K+ + ++++ +FL++ ++  +  Q+FP+
Sbjct: 142 KCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQ--QSFPS 199

Query: 123 ND-DENMVKLSGPAPKVEKK 141
            + D + +KL    P  + +
Sbjct: 200 EEIDLDRIKLVEEPPTTKPR 219

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Mus musculus (taxid: 10090)

>sp|Q54QR3|RB32A_DICDI Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 3/121 (2%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL-SDGSPIPCMLLA 62
           GQERF  MTRVYYK+A G +I FD+T  ++F+   KWK D+D K T  +D  PIP +LLA
Sbjct: 74  GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA 133

Query: 63  NKCDLPHRQV--DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
           NKCDL         ND++ + K++ FIGW ETS KE + +  + +FL+D +++ +  +N 
Sbjct: 134 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQ 193

Query: 121 P 121
           P
Sbjct: 194 P 194

Dictyostelium discoideum (taxid: 44689)

>sp|Q55E31|RB32B_DICDI Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B PE=3 SV=1

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           G ERF  MTRVYY+ A   II+FDL+  ++F    KW++DV+ K  L++  PIP +LLAN
Sbjct: 118 GHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLAN 177

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           K DL    VD   ++ F KE+NFIGW  TS      +N++M FL   ++ +    N P  
Sbjct: 178 KSDLSTSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEIL-EVAKTNHPPK 236

Query: 124 DDENMVKLS 132
            +E+ ++L+
Sbjct: 237 PEEDTLELT 245

Dictyostelium discoideum (taxid: 44689)

>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 87/138 (63%), Gaps = 6/138 (4%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERF  MTRVYY++A G  I+FD+T   +F+   KWK D+D K TL +G P+  +LLAN
Sbjct: 68  GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLAN 127

Query: 64  KCDLPHRQVDIND---IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
           KCD   + V +N+   ++ F KEH F+GW ETS KE + ++++ + L+  ++  E   + 
Sbjct: 128 KCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC--DL 184

Query: 121 PNNDDENMVKLSGPAPKV 138
             + + ++VK    +PKV
Sbjct: 185 LESIEPDIVKPHLTSPKV 202

May be involved in melanosomal transport and docking. Involved in the proper sorting of TYRP1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
328716362	260	PREDICTED: ras-related protein Rab-7L1-l	0.936	0.511	0.700	8e-50
193631807	201	PREDICTED: ras-related protein Rab-7L1-l	0.894	0.631	0.725	8e-50
405965375	517	WD repeat-containing protein 82 [Crassos	0.978	0.268	0.6	7e-43
242013254	202	GTP-binding nuclear protein RAN1, putati	0.711	0.5	0.792	2e-41
321478953	175	hypothetical protein DAPPUDRAFT_39774 [D	0.718	0.582	0.715	1e-38
443693582	174	hypothetical protein CAPTEDRAFT_101663 [	0.746	0.609	0.660	5e-37
344277038	180	PREDICTED: ras-related protein Rab-7L1-l	0.845	0.666	0.496	1e-30
344277036	204	PREDICTED: ras-related protein Rab-7L1-l	0.845	0.588	0.496	2e-30
208609964	179	ras-related protein Rab-7L1 isoform 2 [H	0.774	0.614	0.545	2e-30
55731507	203	hypothetical protein [Pongo abelii]	0.774	0.541	0.545	2e-30

>gi|328716362|ref|XP_003245910.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Acyrthosiphon pisum]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 109/137 (79%), Gaps = 4/137 (2%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFTWMTRVYYKDAHGC+IMFDL+N+NSF NTLKWKKDVD KCT  DG PIPCMLL N
Sbjct: 123 GQERFTWMTRVYYKDAHGCVIMFDLSNKNSFLNTLKWKKDVDAKCTQLDGGPIPCMLLGN 182

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           KCDLP RQ+D  DIE FYKE+NFIGWTETS K+GLMVNDSM+FL++ +M Q         
Sbjct: 183 KCDLPQRQIDQLDIEAFYKENNFIGWTETSAKDGLMVNDSMQFLINSMMGQYN----DET 238

Query: 124 DDENMVKLSGPAPKVEK 140
           D   +VKLSGP  + +K
Sbjct: 239 DQPELVKLSGPNAENKK 255

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193631807|ref|XP_001951808.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Acyrthosiphon pisum]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 106/131 (80%), Gaps = 4/131 (3%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFTWMTRVYYKDAHGC+IMFDL+N+NSF NTLKWKKDVD KCT  DG PIPCMLL N
Sbjct: 64  GQERFTWMTRVYYKDAHGCVIMFDLSNKNSFLNTLKWKKDVDAKCTQLDGGPIPCMLLGN 123

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           KCDLP RQ+D  DIE FYKE+NFIGWTETS K+GLMVNDSM+FL++ +M Q         
Sbjct: 124 KCDLPQRQIDQLDIEAFYKENNFIGWTETSAKDGLMVNDSMQFLINSMMGQYN----DET 179

Query: 124 DDENMVKLSGP 134
           D   +VKLSGP
Sbjct: 180 DQPELVKLSGP 190

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405965375|gb|EKC30753.1| WD repeat-containing protein 82 [Crassostrea gigas]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 107/140 (76%), Gaps = 1/140 (0%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTRVYYKDAH CIIMFDLT Q++F+N +KWKKD+D KC+L+DGSPIPC+LLAN
Sbjct: 369 GQERFTSMTRVYYKDAHACIIMFDLTQQSTFQNAVKWKKDLDTKCSLADGSPIPCLLLAN 428

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG-LQNFPN 122
           KCDL HR+V  +DIE   KEH+F+GWTETS KEGLM+ +SM+FL + +M +   L  F N
Sbjct: 429 KCDLSHREVQQSDIEDMCKEHDFVGWTETSVKEGLMIEESMRFLCEEMMTKHAELDGFSN 488

Query: 123 NDDENMVKLSGPAPKVEKKE 142
           +   +MV  S    + ++ E
Sbjct: 489 SMARSMVPGSTIHLRSQQTE 508

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|242013254|ref|XP_002427327.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis] gi|212511676|gb|EEB14589.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 88/101 (87%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFTWMTRVYYKDAHGC+IMFDLTN+NSF NTLKWK+DVD KC+L DG PIPCMLLAN
Sbjct: 77  GQERFTWMTRVYYKDAHGCVIMFDLTNKNSFVNTLKWKRDVDSKCSLPDGRPIPCMLLAN 136

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
           KCDL  R V+  +IE F+KE+NF GWTETS KEG MVNDSM
Sbjct: 137 KCDLSRRSVEQVEIEEFHKENNFCGWTETSAKEGDMVNDSM 177

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478953|gb|EFX89909.1| hypothetical protein DAPPUDRAFT_39774 [Daphnia pulex]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 86/102 (84%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFTWMTRVYYK+A GCIIMFDLT++NSF+N +KWKKDVD KC L DG+P+PCMLLAN
Sbjct: 74  GQERFTWMTRVYYKEAQGCIIMFDLTSRNSFENAVKWKKDVDSKCVLEDGAPVPCMLLAN 133

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
           KCDL  R+VD  +IE   +EH+FIGWTETS K+ LMV D M+
Sbjct: 134 KCDLRQREVDQWEIETLCREHSFIGWTETSAKDDLMVGDCMR 175

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443693582|gb|ELT94920.1| hypothetical protein CAPTEDRAFT_101663 [Capitella teleta]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 87/106 (82%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTRVYY+DAH CIIMFDLT ++SF+N LKWK D+D KC   DGS +PC+LLAN
Sbjct: 63  GQERFTSMTRVYYRDAHACIIMFDLTQRSSFQNALKWKADLDSKCCQEDGSSVPCILLAN 122

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
           KCDL  R+V+ ++IE F +E NFIGWTE S KEGLMV +SM++L++
Sbjct: 123 KCDLSRREVNQDEIESFCREQNFIGWTEVSVKEGLMVEESMRYLVN 168

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|344277038|ref|XP_003410312.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Loxodonta africana]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 88/129 (68%), Gaps = 9/129 (6%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL  G P+PC+LLAN
Sbjct: 42  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 101

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           KCDL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +M         NN
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM---------NN 152

Query: 124 DDENMVKLS 132
             E+++ LS
Sbjct: 153 SREDVISLS 161

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344277036|ref|XP_003410311.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Loxodonta africana]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 88/129 (68%), Gaps = 9/129 (6%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL  G P+PC+LLAN
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           KCDL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +M         NN
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM---------NN 176

Query: 124 DDENMVKLS 132
             E+++ LS
Sbjct: 177 SREDVISLS 185

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|208609964|ref|NP_001129135.1| ras-related protein Rab-7L1 isoform 2 [Homo sapiens] gi|194384084|dbj|BAG64815.1| unnamed protein product [Homo sapiens]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 82/110 (74%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct: 42  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           KCDL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +MR
Sbjct: 102 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 151

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|55731507|emb|CAH92465.1| hypothetical protein [Pongo abelii]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 83/110 (75%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           KCDL    V+ + I+ F KE+ F GWTETS KE   +N++M+ L++ +MR
Sbjct: 126 KCDLSPWAVNRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
UNIPROTKB|O14966	203	RAB7L1 "Ras-related protein Ra	0.774	0.541	0.545	5.4e-31
UNIPROTKB|F1N9R7	193	RAB7L1 "Uncharacterized protei	0.767	0.564	0.550	6.9e-31
UNIPROTKB|A5PJV4	203	RAB7L1 "RAB7L1 protein" [Bos t	0.767	0.536	0.541	1.1e-30
UNIPROTKB|F1P9G2	225	RAB7L1 "Uncharacterized protei	0.767	0.484	0.541	1.8e-30
UNIPROTKB|I3LHE8	203	RAB7L1 "Uncharacterized protei	0.767	0.536	0.532	2.3e-30
RGD|620892	204	Rab7l1 "RAB7, member RAS oncog	0.936	0.651	0.462	6.2e-30
MGI|MGI:2385107	204	Rab7l1 "RAB7, member RAS oncog	0.845	0.588	0.488	2.7e-29
UNIPROTKB|E1BA60	225	RAB32 "Uncharacterized protein	0.957	0.604	0.431	5.7e-27
UNIPROTKB|F1S747	226	RAB32 "Ras-related protein Rab	0.957	0.601	0.417	7.3e-27
UNIPROTKB|Q06AU5	226	RAB32 "Ras-related protein Rab	0.957	0.601	0.417	1.2e-26

UNIPROTKB|O14966 RAB7L1 "Ras-related protein Rab-7L1" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 60/110 (54%), Positives = 82/110 (74%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
             KCDL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +MR
Sbjct:   126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|F1N9R7 RAB7L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 60/109 (55%), Positives = 82/109 (75%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY++A  C+IMFD+TN ++F N+ KWK+D+D K TL DGSP+PC+LLAN
Sbjct:    80 GQERFTSMTRLYYREASACVIMFDVTNVSTFSNSQKWKQDLDSKLTLPDGSPVPCLLLAN 139

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
             KCDL    V   +++ F KE+ F GW ETS KE   +N+SM+ L++ +M
Sbjct:   140 KCDLSPWAVTREEVDRFSKENGFSGWVETSVKENKNINESMRVLIEKMM 188

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|A5PJV4 RAB7L1 "RAB7L1 protein" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 59/109 (54%), Positives = 81/109 (74%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ KWK+D+D K TL +G P+PC+LLAN
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGEPVPCLLLAN 125

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
             KCDL    V  + ++ F KE+ F GWTETS KE   +N++M+ L++ +M
Sbjct:   126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1P9G2 RAB7L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/109 (54%), Positives = 81/109 (74%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY+DA  CIIMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct:    88 GQERFTSMTRLYYRDASACIIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 147

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
             KCDL    V  + ++ F KE+ F GWTETS KE   +N++M+ L++ +M
Sbjct:   148 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 196

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|I3LHE8 RAB7L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 58/109 (53%), Positives = 81/109 (74%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGGPVPCLLLAN 125

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
             KCDL    V  + ++ F KE+ F GWTETS KE   +N++M+ L++ +M
Sbjct:   126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

RGD|620892 Rab7l1 "RAB7, member RAS oncogene family-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 62/134 (46%), Positives = 88/134 (65%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL  G P+PC+LLAN
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
             K DL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +M         ++
Sbjct:   126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSS 185

Query:   124 DDENMVKL-SGPAP 136
                N + L + P+P
Sbjct:   186 TQGNYINLQTKPSP 199

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:2385107 Rab7l1 "RAB7, member RAS oncogene family-like 1" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 63/129 (48%), Positives = 87/129 (67%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERFT MTR+YY+DA  C+IMFD+TN  +F N+ +WK+D+D K TL  G P+PC+LLAN
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query:    64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
             K DL    V  + I+ F KE+ F GWTETS KE   +N++M+ L++ +M         NN
Sbjct:   126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMM---------NN 176

Query:   124 DDENMVKLS 132
               E+++ LS
Sbjct:   177 SREDVMSLS 185

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BA60 RAB32 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 60/139 (43%), Positives = 88/139 (63%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERF  MTRVYYK+A G  I+FD++  ++F   LKWK D+D K  L +GSPIP +LLAN
Sbjct:    85 GQERFGNMTRVYYKEAVGAFIVFDISRGSTFDAVLKWKSDLDSKVHLPNGSPIPAVLLAN 144

Query:    64 KCDLPHRQVDI-NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
             KCD         + ++ F KEH F GW ETS K+ + ++++ +FL++ ++     Q+FPN
Sbjct:   145 KCDQKKDSGQTPSQMDQFCKEHGFTGWFETSAKDNVNIDEAARFLVENILANH--QSFPN 202

Query:   123 NDDENMVKLSGPAPKVEKK 141
              +++  +KL     K E K
Sbjct:   203 EENDGRIKLEEETVKKESK 221

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1S747 RAB32 "Ras-related protein Rab-32" [Sus scrofa (taxid:9823)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 58/139 (41%), Positives = 91/139 (65%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERF  MTRVYYK+A G +++FD++  ++F+  LKWK D+D K  L +GSPIP +LLAN
Sbjct:    86 GQERFGNMTRVYYKEAVGALVVFDISRGSTFEAVLKWKNDLDSKVHLPNGSPIPAVLLAN 145

Query:    64 KCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
             KCD       + + ++ F KEH F GW ETS K+ + ++++ +FL++ ++     Q+FP+
Sbjct:   146 KCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANH--QSFPS 203

Query:   123 NDDENMVKLSGPAPKVEKK 141
              +++  +KL     K E K
Sbjct:   204 EENDGRIKLDEETMKKENK 222

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q06AU5 RAB32 "Ras-related protein Rab-32" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 58/139 (41%), Positives = 90/139 (64%)

Query:     4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
             GQERF  MTRVYYK+A G +++FD++  + F+  LKWK D+D K  L +GSPIP +LLAN
Sbjct:    86 GQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLAN 145

Query:    64 KCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
             KCD       + + ++ F KEH F GW ETS K+ + ++++ +FL++ ++     Q+FP+
Sbjct:   146 KCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANH--QSFPS 203

Query:   123 NDDENMVKLSGPAPKVEKK 141
              +++  +KL     K E K
Sbjct:   204 EENDGRIKLDEETMKKENK 222

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0090382 "phagosome maturation" evidence=ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R7A4	RAB7L_PONAB	No assigned EC number	0.5454	0.7746	0.5418	yes	N/A
P92963	RAB1C_ARATH	No assigned EC number	0.3093	0.9154	0.6161	yes	N/A
P01123	YPT1_YEAST	No assigned EC number	0.3188	0.9154	0.6310	yes	N/A
Q63481	RAB7L_RAT	No assigned EC number	0.4626	0.9366	0.6519	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-53
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-31
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-29
pfam00071	162	pfam00071, Ras, Ras family	8e-25
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-20
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-18
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	6e-18
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-17
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-17
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-17
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-17
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-16
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-16
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-16
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-16
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-15
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-15
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-14
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-14
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-14
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-14
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-14
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-13
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-13
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	8e-13
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-12
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	7e-12
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-11
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-11
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-11
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-11
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-11
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-11
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-10
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-10
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-10
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-10
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-10
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	9e-10
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-09
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-09
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-09
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-09
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-09
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	9e-09
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-08
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-08
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-08
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-08
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-08
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-07
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	7e-07
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-06
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-06
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-06
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-06
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-06
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-05
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-04
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-04
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-04
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	0.001
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	0.001
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	0.002
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	0.004
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	0.004

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  166 bits (422), Expect = 3e-53
 Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 2/140 (1%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQERF  MTRVYYK A G II+FD+T  ++F+  LKWK D+D K TL +G PIP +LLAN
Sbjct: 59  GQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLAN 118

Query: 64  KCDLPHRQ--VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
           KCDL   +   D   ++ F KE+ FIGW ETS KE + + ++M+FL+  +++ +     P
Sbjct: 119 KCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSP 178

Query: 122 NNDDENMVKLSGPAPKVEKK 141
             D++N++ L       + K
Sbjct: 179 EPDEDNVIDLKQETTTSKSK 198

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  109 bits (274), Expect = 3e-31
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 6/114 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G ++++D+TN+ SF+N   W K++           +  ML+
Sbjct: 56  TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYA----SPNVVIMLV 111

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL   RQV   + E F +EH    + ETS K    V ++ + L   ++++
Sbjct: 112 GNKSDLEEQRQVSREEAEAFAEEHGLPFF-ETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  103 bits (260), Expect = 4e-29
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 6/97 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+TN+ SF+N  KW  ++           IP +L+
Sbjct: 56  TAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA----PPNIPIILV 111

Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEG 97
            NK DL   RQV   + + F KE+  + + ETS K G
Sbjct: 112 GNKSDLEDERQVSTEEAQQFAKENG-LLFFETSAKTG 147

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 92.6 bits (231), Expect = 8e-25
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +  +YY+ A G ++++D+T+++SF+N  KW +++           +P +L+
Sbjct: 55  TAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLV 110

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V   + E   KE     + ETS K    V +
Sbjct: 111 GNKCDLEDQRVVSTEEGEALAKELGLP-FMETSAKTNENVEE 151

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 81.1 bits (201), Expect = 3e-20
 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 10/110 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP--IPCM 59
           T GQER+  +T  YY+ A G ++++D+T +++F+N  +W K+      L D +   I  M
Sbjct: 59  TAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKE------LRDHADSNIVIM 112

Query: 60  LLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
           L+ NK DL H R V   + + F +++  + + ETS  +G  V ++ K LL
Sbjct: 113 LVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTNVEEAFKQLL 161

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 75.8 bits (187), Expect = 3e-18
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG II++D+T+Q SF N  +W +++D +    + + +   L+
Sbjct: 58  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEID-RYASENVNKL---LV 113

Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103
            NKCDL   + VD  + + F  E   I + ETS K    V ++
Sbjct: 114 GNKCDLTDKKVVDYTEAKEFADELG-IPFLETSAKNATNVEEA 155

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 75.0 bits (185), Expect = 6e-18
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C++++D+TN  SF++   W+ +  ++ +  D    P ++L
Sbjct: 56  TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   RQV     + + K    I + ETS KE + V+ 
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQ 157

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 74.4 bits (183), Expect = 1e-17
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+G II +D+T ++SF++   W ++V+        S +  +L+
Sbjct: 59  TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVE----KYGASNVVLLLI 114

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL   R+V   +     + +  +   ETS KE   V ++  FLL
Sbjct: 115 GNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEA--FLL 160

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 74.1 bits (183), Expect = 1e-17
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y ++  G I+++ +T++ SF+     K   +    + D   +P +L+
Sbjct: 54  TAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEI---KNIREQILRVKDKEDVPIVLV 110

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NKCDL   RQV   + E   +E     + ETS K  + +++    L + L+R+
Sbjct: 111 GNKCDLENERQVSTEEGEALAEEWG-CPFLETSAKTNINIDE----LFNTLVRE 159

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T +++F N   W  ++D   T  D      ML+
Sbjct: 56  TAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPD---AVKMLV 112

Query: 62  ANKCDLPHRQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK D  +R+V   + + F ++HN  FI   ETS K  + V  
Sbjct: 113 GNKIDKENREVTREEGQKFARKHNMLFI---ETSAKTRIGVQQ 152

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 72.1 bits (177), Expect = 7e-17
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +TR YY+ A G ++++D+T + +F +   W +D          S +  ML+
Sbjct: 60  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSNSNMTIMLI 115

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTK 95
            NKCDL   R+V   + E F +EH  I + ETS K
Sbjct: 116 GNKCDLESRREVSYEEGEAFAREHGLI-FMETSAK 149

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   ++++D+TN+ SF NT KW  DV  +     G+ +  +L+
Sbjct: 56  TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLV 111

Query: 62  ANKCDLP-HRQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMK 105
            NK DL   RQV   + E   KE+N  FI   ETS K G  V    K
Sbjct: 112 GNKTDLSDKRQVSTEEGEKKAKENNAMFI---ETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 71.5 bits (176), Expect = 1e-16
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 6/102 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+DA G I+++D+T+ +SF+   KW K  +LK     G+ I  +++
Sbjct: 56  TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIK--ELKQMR--GNNISLVIV 111

Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   R V  ++ E + K      + ETS K G  + +
Sbjct: 112 GNKIDLERQRVVSKSEAEEYAKSVGAKHF-ETSAKTGKGIEE 152

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 71.4 bits (176), Expect = 1e-16
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+T++ SF+    W K  +L+     G P I   L
Sbjct: 57  TAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVK--ELQ---EHGPPNIVIAL 111

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL   RQV   + + +  E+  + + ETS K G  VN+
Sbjct: 112 AGNKADLESKRQVSTEEAQEYADENGLL-FMETSAKTGENVNE 153

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 70.4 bits (173), Expect = 3e-16
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-ML 60
           T GQERF  +T  YY+ A G I+++D+T++ SF+N   W +++D        S     ML
Sbjct: 59  TAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNID-----EHASEDVERML 113

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVN 101
           + NKCD+   R V   + E   +E+  I + ETS K  + V 
Sbjct: 114 VGNKCDMEEKRVVSKEEGEALAREYG-IKFLETSAKANINVE 154

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 69.1 bits (169), Expect = 2e-15
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+  HG I+++D+TN  SF N  +W ++++  C       +  +L+
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD-----VCKVLV 116

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
            NK D P R+V   +    +     I   ETS KE + V +    + ++++R +   N  
Sbjct: 117 GNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK-KDNLA 175

Query: 122 NNDDENMVKLSGPAPKVEKKE 142
               +         PK  K++
Sbjct: 176 KQQQQQQND-VVKLPKNSKRK 195

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  +++DA G ++MFDLT++ SF N   W   +      +       +L+
Sbjct: 70  TAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNW---MSQLQAHAYCENPDIVLI 126

Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DLP  R+V          ++  I + ETS   G  V  +++ LLD++M++
Sbjct: 127 GNKADLPDQREVSERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIMKR 179

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +T+ YY+ A  CI++F  T++ SF+    WK+ V+ +C    G  IP +L+
Sbjct: 58  TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC----GD-IPMVLV 112

Query: 62  ANKCDLPHRQVDIND-IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
             K DL  + V  N+  E   K    +    TS K+   V +  ++L +
Sbjct: 113 QTKIDLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY      IIMFD+T++ ++KN   W +D+   C       IP +L+
Sbjct: 65  TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLV 119

Query: 62  ANKCDLPHRQV 72
            NK D+  RQV
Sbjct: 120 GNKVDVKDRQV 130

Length = 215

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +TR YY+ A G ++++D+T + +F +   W +D          + +  ML+
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLI 117

Query: 62  ANKCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103
            NKCDL HR+ V   + E F KEH  I + E S K    V ++
Sbjct: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEA 159

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 22/108 (20%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKW--------KKDVDLKCTLSDG 53
           T GQERF  +T  YY+DAH  ++++D+TN++SF N   W        + DV +       
Sbjct: 57  TAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVI------- 109

Query: 54  SPIPCMLLANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100
                MLL NK D+   R V   D E   KE+  + + ETS K GL V
Sbjct: 110 -----MLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLNV 151

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 65.2 bits (159), Expect = 7e-14
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+++ G +++FD+TN+ SF++   W ++               +L+
Sbjct: 59  TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI---QPHRPVFILV 115

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL-LDVLMRQE 115
            +KCDL   RQV   + E   K+   + + ETS + G  V ++ + L  ++  R +
Sbjct: 116 GHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFELLTQEIYERIK 170

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G ++++ +T++ SF+   K+++ +     + D   +P +L+
Sbjct: 57  TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQI---LRVKDRDDVPIVLV 113

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL + R V   + +   ++     + ETS KE + V++
Sbjct: 114 GNKCDLENERVVSTEEGKELARQWG-CPFLETSAKERINVDE 154

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY      IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 56  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 110

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK 95
            NK D+  R+V    I  F+++ N + + E S K
Sbjct: 111 GNKVDIKDRKVKPKQIT-FHRKKN-LQYYEISAK 142

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 61.4 bits (149), Expect = 8e-13
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 13/87 (14%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  M   YY  AH CI++FD+T + ++KN  KW +++           IPC+++
Sbjct: 56  TAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-----PEIPCIVV 110

Query: 62  ANKCDLPHRQVDINDIE---CFYKEHN 85
           ANK DL     D +  +    F ++HN
Sbjct: 111 ANKIDL-----DPSVTQKKFNFAEKHN 132

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G ++++ +T++ SF+   K+++ +     + D   +P +L+
Sbjct: 55  TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQI---LRVKDRDDVPIVLV 111

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V   + +   ++     + ETS KE + V++
Sbjct: 112 GNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVNVDE 152

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 59.1 bits (143), Expect = 7e-12
 Identities = 29/102 (28%), Positives = 53/102 (51%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ +  C++ F + +  SF+N   WKK+      + +    P ++L
Sbjct: 61  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 120

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103
            NK D+P RQV   + + + +++    + ETS K+   V  +
Sbjct: 121 GNKIDIPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 162

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  M  +Y K+  G I+++ L NQ +F++ +K  +D  ++    +   +P +L+
Sbjct: 56  TAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQD-IKPMRDQIVRVKGYE--KVPIILV 112

Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGW----TETSTKEGLMVND 102
            NK DL   R+V   +     +E     W     ETS K   MVN+
Sbjct: 113 GNKVDLESEREVSSAEGRALAEE-----WGCPFMETSAKSKTMVNE 153

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 8/98 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQERF  +TR YY+ A G ++++D+T++ SF     W  D     TL+  SP I  +L
Sbjct: 56  TAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDAR---TLA--SPDIVIIL 110

Query: 61  LANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
           + NK DL   R+V   +   F +E N + + ETS   G
Sbjct: 111 VGNKKDLEDDREVTFLEASRFAQE-NGLLFLETSALTG 147

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 15  YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT-LSDGSPIPCMLLANKCDLP-HRQV 72
           +YKD  G ++++D+T++ SF+    W K++  +     +   I  ++ ANK DL  HR V
Sbjct: 69  FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV 128

Query: 73  DINDIECFYKEHNFIGWTETSTKEGLMVND 102
             ++   + +   F  + ETS   G  VN+
Sbjct: 129 SEDEGRLWAESKGFKYF-ETSACTGEGVNE 157

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD--GSPIPCM 59
           T GQER+  +T  YY+ A G ++++D+T + +F N  +W ++      L D   S I  M
Sbjct: 68  TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE------LRDHADSNIVIM 121

Query: 60  LLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
           +  NK DL H R V   D +    E   + + ETS  E   V  + + +L
Sbjct: 122 MAGNKSDLNHLRSVAEEDGQAL-AEKEGLSFLETSALEATNVEKAFQTIL 170

Length = 216

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G +++F +T++ SF+   K+   +     + D    P +L+
Sbjct: 57  TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQI---LRVKDRDEFPMILV 113

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVN 101
            NK DL H RQV   + +   ++   I + ETS K+ + V+
Sbjct: 114 GNKADLEHQRQVSREEGQELARQLK-IPYIETSAKDRVNVD 153

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 56.5 bits (136), Expect = 7e-11
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G I+M+D+TN+ SF     W   +  K    D + +  +L+
Sbjct: 57  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQV--ILV 112

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            NKCD+   +V   +      +     + E S KE + V    + L+D++
Sbjct: 113 GNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T + +F +  KW K +D K    D      +L+
Sbjct: 56  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAE---LLLV 111

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK D    R++     E F ++   + + E S K+   V++    L+D ++++  L + 
Sbjct: 112 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL-DI 170

Query: 121 PNNDDENMVKLSGPAPKV 138
             N+  N +    P P++
Sbjct: 171 LRNELSNSILSLQPEPEI 188

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPC-- 58
           T GQERF  +T  YY++A G I+++D+T + +F N    W K+V+L  T  D     C  
Sbjct: 69  TAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD-----CVK 123

Query: 59  MLLANKCDL-PHRQVDINDIECFYKEHN 85
           ML+ NK D    R V   +     KEH 
Sbjct: 124 MLVGNKVDRESERDVSREEGMALAKEHG 151

Length = 211

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + ++ SF++   +++ +     + D   +P +L+
Sbjct: 56  TAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK---RVKDSDDVPMVLV 112

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103
            NKCDL  R V     +   K +  I + ETS K    V ++
Sbjct: 113 GNKCDLAARTVSTRQGQDLAKSYG-IPYIETSAKTRQGVEEA 153

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY      IIMFD+T + ++KN   W +D+   C       IP +L 
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLC 123

Query: 62  ANKCDLPHRQV 72
            NK D+ +RQV
Sbjct: 124 GNKVDVKNRQV 134

Length = 219

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 2   TEGQERF-TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
           T GQERF   M + YY++ H  + ++D+TN  SF +   W ++ +     S  + +P +L
Sbjct: 58  TAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQH---SLPNEVPRIL 114

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTK 95
           + NKCDL    QV  +  + F   H+   + ETS K
Sbjct: 115 VGNKCDLREQIQVPTDLAQRFADAHSMPLF-ETSAK 149

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 54.1 bits (130), Expect = 9e-10
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 17/109 (15%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  M+R+YY+ A   I+ +DLT+ +SF+    W K++     L +   I   L 
Sbjct: 57  TAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ---NLEEHCKI--YLC 111

Query: 62  ANKCDLPH-----RQVDINDIECF---YKEHNFIGWTETSTKEGLMVND 102
             K DL       RQVD +D++ F    K  +F    ETS+K G  V++
Sbjct: 112 GTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF----ETSSKTGQNVDE 156

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K   G ++++ +T++ S     + ++ V     + D   +P +L+
Sbjct: 56  TAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQV---LRIKDSDNVPMVLV 112

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTK 95
            NK DL   RQV   D     ++   + + ETS +
Sbjct: 113 GNKADLEDDRQVSREDGVSLSQQWGNVPFYETSAR 147

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY      IIMFD+T + ++KN   W +D+   C       IP +L 
Sbjct: 51  TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-----ENIPIVLC 105

Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 106 GNKVDVKDRKVKAKSI-TFHRKKNL 129

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T ++++ +   W  D      L++ + +   L+
Sbjct: 58  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-IFLI 113

Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103
            NK DL   R V   + + F  E+  + + E S K G  V D+
Sbjct: 114 GNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA 155

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQE F+ M    ++      +++D+TN+ SF N  +W   ++   T S G   P +L+ N
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW---INRVRTHSHGLHTPGVLVGN 118

Query: 64  KCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEG 97
           KCDL   R+VD    +   + +  + + ETS KEG
Sbjct: 119 KCDLTDRREVDAAQAQALAQANT-LKFYETSAKEG 152

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 52.3 bits (125), Expect = 6e-09
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK-NTLKWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +   YY+ A+G +I++D T + S    T +W +++           +P +L
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD----VPILL 116

Query: 61  LANKCDLPHRQV 72
           + NK DL   Q 
Sbjct: 117 VGNKIDLFDEQS 128

Length = 219

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK--WKKDVDLKCTLSDGSPIPCM 59
           T GQ+ ++ + + Y    HG I+++ +T++ SF+  +K  + K +D+    S    +P +
Sbjct: 56  TAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKES----VPIV 110

Query: 60  LLANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
           L+ NK DL   RQV   + +   +      + E+S KE   V ++ + L++ + + E   
Sbjct: 111 LVGNKSDLHMERQVSAEEGKKLAESWG-AAFLESSAKENENVEEAFELLIEEIEKVENPL 169

Query: 119 NFPNN 123
                
Sbjct: 170 PPGQK 174

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 17/44 (38%), Positives = 32/44 (72%)

Query: 2  TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD 45
          T GQER+  +T+ YY+ A G  +++D++++ S+++ +KW  DVD
Sbjct: 56 TAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVD 99

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 10/131 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   I+++D+TN+ SF+NT KW +D+        G  +   L+
Sbjct: 36  TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI----LNERGKDVIIALV 91

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK DL   R+V   +     +E+N + + ETS K G     ++K L   +  +    + 
Sbjct: 92  GNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAG----HNIKVLFKKIAAKLPNLDN 146

Query: 121 PNNDDENMVKL 131
            N++D N+V +
Sbjct: 147 SNSNDANVVDI 157

Length = 176

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+  I+ +D+T + SF+   +W ++++        + +  +L+
Sbjct: 63  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN----NKVITILV 118

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
            NK DL   R+V     E F    +   + ETS KE   V    K  LD+  R
Sbjct: 119 GNKIDLAERREVSQQRAEEFSDAQDMY-YLETSAKESDNVE---KLFLDLACR 167

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q SF +    ++ +     + D   +P +L+
Sbjct: 56  TAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQI---LRVKDTEDVPMILV 112

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V   + +   ++     + ETS K  + V++
Sbjct: 113 GNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDE 154

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQ RF  + R Y + A G I+++D+TN+ SF    +W K++D      + +P +P +L
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEID------EHAPGVPKIL 115

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL-- 117
           + N+  L   RQV     +  Y E N + + E S      + +S   L  +++ + G   
Sbjct: 116 VGNRLHLAFKRQVATEQAQA-YAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPP 174

Query: 118 QNFPNNDDENMVKLS 132
           Q+ P N   N  K+S
Sbjct: 175 QSPPQNCSRNSCKIS 189

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 48.6 bits (116), Expect = 9e-08
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 11  MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69
           M   Y   A    +++D+TN  SF+N   W   V  K      +    +L+ NK DL H 
Sbjct: 66  MLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVK-KVNEESETKPKMVLVGNKTDLEHN 124

Query: 70  RQVDINDIECFYKEHNFIGWTETSTKEGLMVN 101
           RQV       F +E++       S K G  V 
Sbjct: 125 RQVTAEKHARFAQENDMESIF-VSAKTGDRVF 155

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 2   TEGQERF-----TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI 56
           T G + F       + R+  + A   +++ D T++ S ++     K + L+    +G  I
Sbjct: 54  TPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDA----KLLILRRLRKEG--I 107

Query: 57  PCMLLANKCDL----PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
           P +L+ NK DL       ++   +              E S K G
Sbjct: 108 PIILVGNKIDLLEEREVEELLRLEELAKILGVPVF---EVSAKTG 149

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 19  AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD 73
           A G ++++ +T+++SF    +  + +           IP +L+ NK DL H RQV 
Sbjct: 73  ADGFVLVYSITDRSSFDVVSQLLQLIREIKKRD--GEIPVILVGNKADLLHSRQVS 126

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + ++ +T+++SF+    +++ +     + D   +P +L+
Sbjct: 60  TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQI---LRVKDKDRVPMILV 116

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103
            NKCDL   RQV   + +   K    I + ETS K+ + V+++
Sbjct: 117 GNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEA 158

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-- 59
           T GQERF  +   YY+ A   II+FDLT+  S ++T +W +D      L +  P   +  
Sbjct: 56  TAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLED-----ALKENDPSSVLLF 110

Query: 60  LLANKCDL 67
           L+  K DL
Sbjct: 111 LVGTKKDL 118

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G ++++ +T Q++F N L+  ++  L+  + D   +P +L+
Sbjct: 56  TAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTF-NDLQDLREQILR--VKDTEDVPMILV 112

Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V     +   ++     + ETS K  + VN+
Sbjct: 113 GNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKINVNE 153

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQ  FT M   Y +   G II + +T+++SF+   ++K+ +  +  L++   IP +L+
Sbjct: 57  TAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELI-TRVRLTE--DIPLVLV 113

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK DL   RQV   +     +E N   + ETS      ++D+   L+  + R+E
Sbjct: 114 GNKVDLEQQRQVTTEEGRNLAREFN-CPFFETSAALRFYIDDAFHGLVREIRRKE 167

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTN-QNSFKNTL-KWKKDVDLKCTLSDGSPIPCM 59
           T GQE +  + R+YY+     + +FD+       +  L K  K++         S +P +
Sbjct: 58  TAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE----SGVPII 113

Query: 60  LLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
           L+ NK DL   ++  +    F K  N       S + G  ++ + K + 
Sbjct: 114 LVGNKIDLRDAKLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAFKIVE 161

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP--IPCM 59
           T G  +F  M R+     H  I+++ +T++ S +   + K   +L C +   +   IP M
Sbjct: 56  TTGSHQFPAMQRLSISKGHAFILVYSITSKQSLE---ELKPIYELICEIKGNNLEKIPIM 112

Query: 60  LLANKCD-LPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
           L+ NKCD  P R+V  ++     +  N   + ETS K    V +  + LL+
Sbjct: 113 LVGNKCDESPSREVSSSEGAALARTWN-CAFMETSAKTNHNVQELFQELLN 162

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 19/131 (14%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y D    +I + + N  S  N   KW  +V+  C    G+PI  +L
Sbjct: 59  TAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC---PGTPI--VL 113

Query: 61  LANKCDLPHRQ-------------VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
           +  K DL   +             V     E   K    + + E S K    V++     
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAA 173

Query: 108 LDVLMRQEGLQ 118
           ++V + + G  
Sbjct: 174 INVALSKSGRA 184

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF +M  +  + A G I++ D    +S   T   ++ +D    L+  +PIP ++ 
Sbjct: 75  TPGQERFKFMWEILSRGAVGAIVLVD----SSRPITFHAEEIIDF---LTSRNPIPVVVA 127

Query: 62  ANKCDLPHRQ 71
            NK DL    
Sbjct: 128 INKQDLFDAL 137

Length = 187

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 20/95 (21%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +T +   + ++  G I+++ +T++++F+   ++++ +  +      + +P M++
Sbjct: 54  TAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQI-QRVKDESAADVPIMIV 112

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTK 95
            NKCD  + R+V   +     +      + E S K
Sbjct: 113 GNKCDKVYEREVSTEEGAALARRLG-CEFIEASAK 146

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 20/112 (17%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y      ++ F + + +SF+N   KW  ++   C       +P +L
Sbjct: 55  TAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-----PNVPIIL 109

Query: 61  LANKCDL----PHRQVDINDIECFY--------KEHNFIGWTETS--TKEGL 98
           +  K DL       +      +           KE   + + E S  T+EGL
Sbjct: 110 VGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGL 161

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE F  +  + Y D H  ++ F + N +S +N   KW  ++   C       +  +L
Sbjct: 55  TAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-----PGVKLVL 109

Query: 61  LANKCDL 67
           +A KCDL
Sbjct: 110 VALKCDL 116

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 43/175 (24%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-- 59
           T G+E+F  +  +Y + A   I+ +D++N  S +      + + L  T ++     C+  
Sbjct: 51  TAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANED----CLFA 104

Query: 60  LLANKCDLP--------------------HRQVDINDIECFYKEHN-FIGWT-------- 90
           ++ NK DL                      RQV + D + FYK  N +            
Sbjct: 105 VVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAE 164

Query: 91  ----ETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVEKK 141
               ETS K G  V++  ++L ++++     Q    N       ++ P PK  K 
Sbjct: 165 KMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT--QGTVNLPNPKRSKS 217

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 19/132 (14%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y  AH  +I F +   +S +N   KW ++V   C       +P +L
Sbjct: 56  TAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-----PNVPVIL 110

Query: 61  LANKCDL-----------PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL- 108
           +  K DL               V I   +   +      + E S   G  V+D  +    
Sbjct: 111 VGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170

Query: 109 -DVLMRQEGLQN 119
             +L+R+ G + 
Sbjct: 171 AALLVRKSGKEE 182

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G +++F +T+  SF    ++++ + L+    D   +P +L+
Sbjct: 55  TAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQI-LRVKEDDN--VPLLLV 111

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK 95
            NKCDL  ++    +      E   + + ETS K
Sbjct: 112 GNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAK 145

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSP-IPCM 59
           T GQE +  +  + Y D    +I F + +  SF+N   KW  +V   C      P +P +
Sbjct: 53  TAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC------PNVPII 106

Query: 60  LLANKCDLPHRQVDINDIE 78
           L+  K DL + +  + ++ 
Sbjct: 107 LVGTKLDLRNDKSTLEELS 125

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG0084|consensus	205		99.97
KOG0092|consensus	200		99.96
KOG0094|consensus	221		99.96
KOG0078|consensus	207		99.96
KOG0394|consensus	210		99.95
KOG0098|consensus	216		99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.94
KOG0079|consensus	198		99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0080|consensus	209		99.94
KOG0088|consensus	218		99.94
KOG0087|consensus	222		99.94
KOG0091|consensus	213		99.94
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
PTZ00099	176	rab6; Provisional	99.93
KOG0093|consensus	193		99.93
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.93
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.93
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.93
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.92
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.92
KOG0083|consensus	192		99.92
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.92
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.92
KOG0081|consensus	219		99.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.91
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.91
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.91
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.91
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.9
KOG0086|consensus	214		99.9
PTZ00369	189	Ras-like protein; Provisional	99.9
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.9
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.9
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.9
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.9
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.9
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.9
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.89
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.89
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.89
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.89
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.89
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.89
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.89
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.89
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.89
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.89
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.88
KOG0097|consensus	215		99.88
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.88
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.88
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.88
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.88
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.88
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.88
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.88
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.88
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.87
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.87
PLN03110	216	Rab GTPase; Provisional	99.87
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.87
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.87
KOG0095|consensus	213		99.87
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.87
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.87
PLN03118	211	Rab family protein; Provisional	99.87
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.87
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.86
KOG0393|consensus	198		99.86
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.86
KOG0395|consensus	196		99.86
PLN03108	210	Rab family protein; Provisional	99.86
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.86
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.86
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.86
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.86
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.85
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.85
PLN00223	181	ADP-ribosylation factor; Provisional	99.85
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.85
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.84
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.84
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.84
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.84
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.84
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.84
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.84
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.83
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.83
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.83
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.83
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.83
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.82
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.82
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.82
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.82
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.82
PTZ00133	182	ADP-ribosylation factor; Provisional	99.82
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.81
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.81
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.81
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.81
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.81
KOG4252|consensus	246		99.8
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.8
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.78
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.78
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.78
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.78
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.77
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.77
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.77
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.77
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.77
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.76
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.76
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.75
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.75
KOG4423|consensus	229		99.74
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.74
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.71
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.69
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.68
PLN00023	334	GTP-binding protein; Provisional	99.67
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.66
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.66
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.64
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.64
KOG3883|consensus	198		99.64
PRK12299	335	obgE GTPase CgtA; Reviewed	99.63
KOG0073|consensus	185		99.62
KOG0070|consensus	181		99.62
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.61
KOG0075|consensus	186		99.61
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.61
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.6
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.6
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.56
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.55
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.55
PRK05433	600	GTP-binding protein LepA; Provisional	99.55
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.54
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.54
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.54
cd00881	189	GTP_translation_factor GTP translation factor fami	99.54
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.53
KOG0076|consensus	197		99.52
COG1100	219	GTPase SAR1 and related small G proteins [General	99.52
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.51
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.51
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.51
CHL00189	742	infB translation initiation factor 2; Provisional	99.5
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.49
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.49
KOG0096|consensus	216		99.49
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.48
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.48
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.48
PRK04213	201	GTP-binding protein; Provisional	99.47
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.46
PRK05306	787	infB translation initiation factor IF-2; Validated	99.46
PRK03003	472	GTP-binding protein Der; Reviewed	99.45
KOG0071|consensus	180		99.45
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.44
PRK12297	424	obgE GTPase CgtA; Reviewed	99.42
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.42
PRK11058	426	GTPase HflX; Provisional	99.42
KOG1673|consensus	205		99.41
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.4
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.39
PRK15494	339	era GTPase Era; Provisional	99.39
PRK00093	435	GTP-binding protein Der; Reviewed	99.39
PRK12298	390	obgE GTPase CgtA; Reviewed	99.38
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.38
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.37
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.37
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.36
PRK00089	292	era GTPase Era; Reviewed	99.35
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.35
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.34
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.34
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.33
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.33
PRK00093	435	GTP-binding protein Der; Reviewed	99.33
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.32
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.32
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.32
KOG0462|consensus	650		99.31
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.3
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.3
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.29
PRK12296	500	obgE GTPase CgtA; Reviewed	99.29
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.29
PRK04004	586	translation initiation factor IF-2; Validated	99.29
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.29
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.28
KOG0072|consensus	182		99.28
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.28
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.27
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.26
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.26
PRK10218	607	GTP-binding protein; Provisional	99.26
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.26
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.26
PRK12317	425	elongation factor 1-alpha; Reviewed	99.25
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.25
PRK14845	1049	translation initiation factor IF-2; Provisional	99.24
COG1159	298	Era GTPase [General function prediction only]	99.23
PRK12736	394	elongation factor Tu; Reviewed	99.22
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.21
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.2
PLN00043	447	elongation factor 1-alpha; Provisional	99.19
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.19
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.16
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.16
PRK12289	352	GTPase RsgA; Reviewed	99.15
PRK00098	298	GTPase RsgA; Reviewed	99.15
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.15
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.15
COG1160	444	Predicted GTPases [General function prediction onl	99.14
PRK12735	396	elongation factor Tu; Reviewed	99.14
PRK09866	741	hypothetical protein; Provisional	99.13
COG1160	444	Predicted GTPases [General function prediction onl	99.13
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.11
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.11
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.1
KOG1145|consensus	683		99.09
CHL00071	409	tufA elongation factor Tu	99.08
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.07
PRK12288	347	GTPase RsgA; Reviewed	99.06
PRK13351	687	elongation factor G; Reviewed	99.02
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.02
PRK00049	396	elongation factor Tu; Reviewed	99.01
KOG0074|consensus	185		99.0
PRK13768	253	GTPase; Provisional	98.99
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.98
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.97
COG2262	411	HflX GTPases [General function prediction only]	98.97
PRK12740	668	elongation factor G; Reviewed	98.96
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.96
PTZ00141	446	elongation factor 1- alpha; Provisional	98.95
PLN03127	447	Elongation factor Tu; Provisional	98.94
PLN03126	478	Elongation factor Tu; Provisional	98.91
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.9
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.88
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.87
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.87
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.87
PRK13796	365	GTPase YqeH; Provisional	98.86
COG0218	200	Predicted GTPase [General function prediction only	98.86
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.84
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.83
COG0486	454	ThdF Predicted GTPase [General function prediction	98.82
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.81
PRK12739	691	elongation factor G; Reviewed	98.8
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.78
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.76
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.74
KOG1489|consensus	366		98.74
KOG1423|consensus	379		98.73
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.73
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.71
KOG0077|consensus	193		98.66
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.65
KOG1707|consensus	625		98.64
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.61
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.59
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.58
KOG1144|consensus	1064		98.58
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.51
PRK00007	693	elongation factor G; Reviewed	98.5
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.5
PRK01889	356	GTPase RsgA; Reviewed	98.49
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.46
KOG0090|consensus	238		98.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.42
COG0536	369	Obg Predicted GTPase [General function prediction	98.41
PRK07560	731	elongation factor EF-2; Reviewed	98.37
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.36
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.33
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.33
COG1084	346	Predicted GTPase [General function prediction only	98.28
COG1162	301	Predicted GTPases [General function prediction onl	98.27
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.25
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.23
KOG1490|consensus	620		98.22
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.19
PTZ00416	836	elongation factor 2; Provisional	98.16
KOG1707|consensus	625		98.15
KOG0082|consensus	354		98.11
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.08
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.08
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.08
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.07
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.93
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.88
KOG0468|consensus	971		97.86
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.85
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.85
KOG0458|consensus	603		97.78
PRK09602	396	translation-associated GTPase; Reviewed	97.77
COG1161	322	Predicted GTPases [General function prediction onl	97.75
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.74
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.72
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.71
KOG1191|consensus	531		97.71
KOG1424|consensus	562		97.66
KOG1532|consensus	366		97.64
KOG0461|consensus	522		97.64
KOG0705|consensus	749		97.61
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.58
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.57
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.56
KOG2423|consensus	572		97.54
COG3596	296	Predicted GTPase [General function prediction only	97.53
KOG0460|consensus	449		97.51
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.46
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.35
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.34
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.31
KOG2484|consensus	435		97.17
KOG3905|consensus	473		97.04
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.9
KOG1143|consensus	591		96.9
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.86
KOG0466|consensus	466		96.81
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.74
KOG0099|consensus	379		96.74
cd03110	179	Fer4_NifH_child This protein family's function is	96.71
KOG0467|consensus	887		96.67
COG1163	365	DRG Predicted GTPase [General function prediction	96.39
KOG0463|consensus	641		96.17
KOG2486|consensus	320		96.09
KOG3886|consensus	295		95.85
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.67
KOG0465|consensus	721		95.66
KOG0448|consensus	749		95.59
KOG0410|consensus	410		95.44
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	95.4
KOG0085|consensus	359		95.18
KOG0464|consensus	753		95.18
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	95.1
KOG2485|consensus	335		94.94
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	94.6
KOG1954|consensus	532		94.54
KOG0447|consensus	980		94.39
KOG3887|consensus	347		94.27
KOG0459|consensus	501		94.04
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.79
KOG0469|consensus	842		93.75
PRK14974	336	cell division protein FtsY; Provisional	93.67
PRK10416	318	signal recognition particle-docking protein FtsY;	93.6
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	93.36
COG1149	284	MinD superfamily P-loop ATPase containing an inser	92.46
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	92.38
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	91.95
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	91.43
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	91.08
cd03111	106	CpaE_like This protein family consists of proteins	91.02
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	90.84
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	90.62
PHA02518	211	ParA-like protein; Provisional	90.51
COG1163	365	DRG Predicted GTPase [General function prediction	90.47
PRK00771	437	signal recognition particle protein Srp54; Provisi	89.1
TIGR00959	428	ffh signal recognition particle protein. This mode	88.8
KOG1486|consensus	364		88.43
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	88.33
cd03112	158	CobW_like The function of this protein family is u	86.62
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	86.61
cd02036	179	MinD Bacterial cell division requires the formatio	86.53
PRK10867	433	signal recognition particle protein; Provisional	85.81
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	85.23
cd03114	148	ArgK-like The function of this protein family is u	85.06
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	85.06
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	84.81
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	84.77
cd03115	173	SRP The signal recognition particle (SRP) mediates	84.72
COG1908	132	FrhD Coenzyme F420-reducing hydrogenase, delta sub	84.33
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	84.18
COG0523	323	Putative GTPases (G3E family) [General function pr	83.46
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	83.19
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	83.08
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	82.54
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	82.07
KOG4273|consensus	418		81.58
PTZ00258	390	GTP-binding protein; Provisional	81.1
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	80.68
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	80.49
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	80.43
KOG3929|consensus	363		80.01

>KOG0084|consensus

Probab=99.97  E-value=4.3e-30  Score=170.92  Aligned_cols=129  Identities=35%  Similarity=0.556  Sum_probs=113.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||||++++.+||++|++||+|||+++..||..+..|+.++.++    ...++|.+|||||+|+.+ +.+..++...
T Consensus        64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~----~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~  139 (205)
T KOG0084|consen   64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY----ASENVPKLLVGNKCDLTEKRVVSTEEAQE  139 (205)
T ss_pred             eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh----ccCCCCeEEEeeccccHhheecCHHHHHH
Confidence            89999999999999999999999999999999999999999999644    456789999999999988 8889999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSG  133 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (142)
                      ++..+++.+++++||+++.++++.|..|...+..++.........+...+++.+
T Consensus       140 fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~  193 (205)
T KOG0084|consen  140 FADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKG  193 (205)
T ss_pred             HHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence            999999544999999999999999999999999998876665543344444444

>KOG0092|consensus

Probab=99.96  E-value=2.4e-29  Score=166.82  Aligned_cols=114  Identities=27%  Similarity=0.535  Sum_probs=104.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||||.++.+.||++|+++|+|||+++..||..++.|+.++.+.    ..+++-+.|||||+|+.. +.+..++...
T Consensus        60 DTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~----~~~~~vialvGNK~DL~~~R~V~~~ea~~  135 (200)
T KOG0092|consen   60 DTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ----ASPNIVIALVGNKADLLERREVEFEEAQA  135 (200)
T ss_pred             EcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh----CCCCeEEEEecchhhhhhcccccHHHHHH
Confidence            89999999999999999999999999999999999999999999643    337788889999999998 8999999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN  119 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~  119 (142)
                      ++...+.. ++++||+++.|++++|..|.+.++.......
T Consensus       136 yAe~~gll-~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  136 YAESQGLL-FFETSAKTGENVNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             HHHhcCCE-EEEEecccccCHHHHHHHHHHhccCcccccc
Confidence            99999955 9999999999999999999999998765443

>KOG0094|consensus

Probab=99.96  E-value=8.6e-29  Score=164.52  Aligned_cols=129  Identities=34%  Similarity=0.465  Sum_probs=112.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||||+++.+.|++++.++|+|||+++..||+....|++.+.   +.+...++-++|||||.||.+ +.+..++.+.
T Consensus        77 DTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~---~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~  153 (221)
T KOG0094|consen   77 DTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVR---RERGSDDVIIFLVGNKTDLSDKRQVSIEEGER  153 (221)
T ss_pred             ecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHH---hccCCCceEEEEEcccccccchhhhhHHHHHH
Confidence            899999999999999999999999999999999999999999997   444555688999999999998 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSG  133 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (142)
                      .+++++. .|+++||+.|.||.++|..|...+......+..+.+.....++++.
T Consensus       154 kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~~~~~~~i~~k~  206 (221)
T KOG0094|consen  154 KAKELNA-EFIETSAKAGENVKQLFRRIAAALPGMEVLEILSKQESMVDINLKG  206 (221)
T ss_pred             HHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCccccccccccccceeEEccC
Confidence            9999996 4999999999999999999999998876655444444456666663

>KOG0078|consensus

Probab=99.96  E-value=4.5e-28  Score=163.14  Aligned_cols=112  Identities=33%  Similarity=0.545  Sum_probs=104.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|.++..+||++|+++++|||+++..||+.+..|+..+..    +..+++|.+|||||+|+.. +.+..+..+.
T Consensus        67 DtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e----~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~  142 (207)
T KOG0078|consen   67 DTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDE----HASDDVVKILVGNKCDLEEKRQVSKERGEA  142 (207)
T ss_pred             EcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHh----hCCCCCcEEEeeccccccccccccHHHHHH
Confidence            8999999999999999999999999999999999999999999954    3446999999999999987 8999999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      +|.++| .+|+++||++|.||.+.|-.|++.++.+...
T Consensus       143 lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  143 LAREYG-IKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             HHHHhC-CeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            999999 5599999999999999999999999976544

>KOG0394|consensus

Probab=99.95  E-value=9.7e-28  Score=158.13  Aligned_cols=117  Identities=29%  Similarity=0.512  Sum_probs=108.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~   77 (142)
                      ||||||||.++...+|++||++++|||++++.||+.+..|..++.....-..+...|+||+|||+|+..   +.++....
T Consensus        64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A  143 (210)
T KOG0394|consen   64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA  143 (210)
T ss_pred             ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence            899999999999999999999999999999999999999999987655444567899999999999966   78999999


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      +.||.+.|.+|||++||+...||.+.|..+.+.+++.+..
T Consensus       144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            9999999999999999999999999999999999988754

>KOG0098|consensus

Probab=99.95  E-value=5.3e-27  Score=154.95  Aligned_cols=112  Identities=32%  Similarity=0.517  Sum_probs=103.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|||+|++++.+||++|.++|+|||++..+||..+..|+.++.    ++..++..++|++||+|+.. +.|..+++++
T Consensus        61 DtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~r----q~~~~NmvImLiGNKsDL~~rR~Vs~EEGea  136 (216)
T KOG0098|consen   61 DTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDAR----QHSNENMVIMLIGNKSDLEARREVSKEEGEA  136 (216)
T ss_pred             ecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHH----HhcCCCcEEEEEcchhhhhccccccHHHHHH
Confidence            899999999999999999999999999999999999999999995    44458899999999999987 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ||+++|++ ++++||+++.++++.|..+...+.+.-..
T Consensus       137 FA~ehgLi-fmETSakt~~~VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  137 FAREHGLI-FMETSAKTAENVEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             HHHHcCce-eehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            99999955 99999999999999999999999876543

>cd04121 Rab40 Rab40 subfamily

Probab=99.94  E-value=6.8e-26  Score=154.47  Aligned_cols=111  Identities=27%  Similarity=0.495  Sum_probs=101.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.|++++|++|+|||++++.||+.+..|+.++....     +++|+||||||.|+.. +.+..+++..
T Consensus        61 Dt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~~~v~~~~~~~  135 (189)
T cd04121          61 DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFKRQVATEQAQA  135 (189)
T ss_pred             eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhccCCCHHHHHH
Confidence            899999999999999999999999999999999999999999996443     6899999999999976 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      +++..+ .++++|||++|.||+++|.++++.+..+.++
T Consensus       136 ~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         136 YAERNG-MTFFEVSPLCNFNITESFTELARIVLMRHGR  172 (189)
T ss_pred             HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            999988 5699999999999999999999999877654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0079|consensus

Probab=99.94  E-value=8.7e-27  Score=148.91  Aligned_cols=109  Identities=35%  Similarity=0.610  Sum_probs=102.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|+.++..||++.+++++|||+++.+||..+..|++++...+     +.+|-+|||||+|..+ +.+..++...
T Consensus        63 DtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-----dsv~~vLVGNK~d~~~RrvV~t~dAr~  137 (198)
T KOG0079|consen   63 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-----DSVPKVLVGNKNDDPERRVVDTEDARA  137 (198)
T ss_pred             ecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-----ccccceecccCCCCccceeeehHHHHH
Confidence            899999999999999999999999999999999999999999998655     7899999999999988 7788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      |+...+ +.+|++||+.+.+++..|..|.++++..+
T Consensus       138 ~A~~mg-ie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  138 FALQMG-IELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             HHHhcC-chheehhhhhcccchHHHHHHHHHHHHHH
Confidence            999999 45999999999999999999999999877

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=8.5e-26  Score=155.39  Aligned_cols=111  Identities=29%  Similarity=0.493  Sum_probs=98.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.|++++|++|+|||++++.||+.+..|+..+...    ...++|+|+|+||+|+.. +.+.......
T Consensus        55 DtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK~DL~~~~~v~~~~~~~  130 (202)
T cd04120          55 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDREISRQQGEK  130 (202)
T ss_pred             eCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999887532    235799999999999975 7788888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +++.....+|++|||++|.||+++|.+++..+.+..
T Consensus       131 ~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~  166 (202)
T cd04120         131 FAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence            888763256999999999999999999999887753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0080|consensus

Probab=99.94  E-value=8.7e-27  Score=150.74  Aligned_cols=112  Identities=31%  Similarity=0.477  Sum_probs=104.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|++++++||++|.++|+|||++.+.||..++.|+.++..++   ..+++-.++|+||+|... +.++.++...
T Consensus        66 DTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ys---tn~diikmlVgNKiDkes~R~V~reEG~k  142 (209)
T KOG0080|consen   66 DTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYS---TNPDIIKMLVGNKIDKESERVVDREEGLK  142 (209)
T ss_pred             eccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhc---CCccHhHhhhcccccchhcccccHHHHHH
Confidence            899999999999999999999999999999999999999999999555   778888999999999875 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++.+++. |+++||++.+++...|..++..|++...
T Consensus       143 fAr~h~~L-FiE~SAkt~~~V~~~FeelveKIi~tp~  178 (209)
T KOG0080|consen  143 FARKHRCL-FIECSAKTRENVQCCFEELVEKIIETPS  178 (209)
T ss_pred             HHHhhCcE-EEEcchhhhccHHHHHHHHHHHHhcCcc
Confidence            99999966 9999999999999999999999987543

>KOG0088|consensus

Probab=99.94  E-value=1.5e-26  Score=149.44  Aligned_cols=111  Identities=26%  Similarity=0.542  Sum_probs=102.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|..+.+.||++++++++|||++|..||+.+++|..+++...    ...+.+++|+||+|+.+ +.++.++...
T Consensus        68 DTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml----Gnei~l~IVGNKiDLEeeR~Vt~qeAe~  143 (218)
T KOG0088|consen   68 DTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML----GNEIELLIVGNKIDLEEERQVTRQEAEA  143 (218)
T ss_pred             eccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh----CCeeEEEEecCcccHHHhhhhhHHHHHH
Confidence            899999999999999999999999999999999999999999996443    35678899999999987 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..-|.. |+++||+++.||.++|..+...++++..
T Consensus       144 YAesvGA~-y~eTSAk~N~Gi~elFe~Lt~~MiE~~s  179 (218)
T KOG0088|consen  144 YAESVGAL-YMETSAKDNVGISELFESLTAKMIEHSS  179 (218)
T ss_pred             HHHhhchh-heecccccccCHHHHHHHHHHHHHHHhh
Confidence            99999954 9999999999999999999999998764

>KOG0087|consensus

Probab=99.94  E-value=3.2e-26  Score=153.96  Aligned_cols=110  Identities=31%  Similarity=0.520  Sum_probs=102.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||||+.++.+||++|.++++|||++...||+.+..|+.++    +.+..++++++|||||+||.. +.+..++...
T Consensus        69 DTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~EL----Rdhad~nivimLvGNK~DL~~lraV~te~~k~  144 (222)
T KOG0087|consen   69 DTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKEL----RDHADSNIVIMLVGNKSDLNHLRAVPTEDGKA  144 (222)
T ss_pred             cccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHH----HhcCCCCeEEEEeecchhhhhccccchhhhHh
Confidence            89999999999999999999999999999999999999999999    455567999999999999988 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +++..+ ..|+++||.++.+++..|..++..|...-
T Consensus       145 ~Ae~~~-l~f~EtSAl~~tNVe~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  145 FAEKEG-LFFLETSALDATNVEKAFERVLTEIYKIV  179 (222)
T ss_pred             HHHhcC-ceEEEecccccccHHHHHHHHHHHHHHHH
Confidence            999998 55999999999999999999999888744

>KOG0091|consensus

Probab=99.94  E-value=1.8e-25  Score=145.00  Aligned_cols=130  Identities=28%  Similarity=0.482  Sum_probs=110.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|++++.+||+++-++++|||+++..||+.++.|+.+...+.+  .+.++.++|||+|+|+.. +.++.++.+.
T Consensus        64 dtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEk  141 (213)
T KOG0091|consen   64 DTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEK  141 (213)
T ss_pred             eccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHH
Confidence            8999999999999999999999999999999999999999988764441  233455799999999988 8999999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSG  133 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (142)
                      +++.+|+. |+++|+++|.|+++.|+.|...+...-.+........+..++++.
T Consensus       142 lAa~hgM~-FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsr  194 (213)
T KOG0091|consen  142 LAASHGMA-FVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSR  194 (213)
T ss_pred             HHHhcCce-EEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccC
Confidence            99999955 999999999999999999999999876554455444444444433

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=6.3e-25  Score=150.96  Aligned_cols=118  Identities=49%  Similarity=0.883  Sum_probs=102.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++|+|||++++.||+.+..|+..+..........++|+|||+||+|+.. +.+..+++..
T Consensus        56 Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  135 (201)
T cd04107          56 DIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQ  135 (201)
T ss_pred             ECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432222236789999999999974 5678888999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ  118 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~  118 (142)
                      +++..++.+++++||++|.|++++|.+|++.+++.....
T Consensus       136 ~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~  174 (201)
T cd04107         136 FCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNL  174 (201)
T ss_pred             HHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhh
Confidence            999988667999999999999999999999998765433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00099 rab6; Provisional

Probab=99.93  E-value=1.3e-24  Score=146.70  Aligned_cols=112  Identities=32%  Similarity=0.429  Sum_probs=98.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..|+++||++|+|||++++.||+.+..|+..+...    ...++|++||+||+|+.. +.+..+++..
T Consensus        35 Dt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~----~~~~~piilVgNK~DL~~~~~v~~~e~~~  110 (176)
T PTZ00099         35 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE----RGKDVIIALVGNKTDLGDLRKVTYEEGMQ  110 (176)
T ss_pred             ECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999999888632    225789999999999965 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ++..++. .+++|||++|.|++++|.+|+..+.+....
T Consensus       111 ~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099        111 KAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             HHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            8888884 599999999999999999999999876543

>KOG0093|consensus

Probab=99.93  E-value=2.1e-25  Score=142.44  Aligned_cols=111  Identities=30%  Similarity=0.529  Sum_probs=102.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|||+|+.++..||++|+++|+|||+++.+||..++.|.-.+..+++    .+.|+|||+||||+.+ +.++.+.+..
T Consensus        76 DTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw----~naqvilvgnKCDmd~eRvis~e~g~~  151 (193)
T KOG0093|consen   76 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW----DNAQVILVGNKCDMDSERVISHERGRQ  151 (193)
T ss_pred             ecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec----cCceEEEEecccCCccceeeeHHHHHH
Confidence            8999999999999999999999999999999999999999999865543    6899999999999987 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++.++|+ .||++||+.+.+++++|..++..+.+...
T Consensus       152 l~~~LGf-efFEtSaK~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  152 LADQLGF-EFFETSAKENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             HHHHhCh-HHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence            9999996 49999999999999999999999987654

>cd04133 Rop_like Rop subfamily

Probab=99.93  E-value=7.5e-25  Score=147.82  Aligned_cols=107  Identities=22%  Similarity=0.383  Sum_probs=95.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      ||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+....     +++|++|||||+|+.+ +        
T Consensus        55 Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~  129 (176)
T cd04133          55 DTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPG  129 (176)
T ss_pred             ECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccC
Confidence            8999999999999999999999999999999999998 68999986443     5799999999999954 2        


Q ss_pred             --CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         71 --QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        71 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                        .+..+++..+++.++..+|++|||++|.||+++|..+++.+.
T Consensus       130 ~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         130 ASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence              378889999999998657999999999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.93  E-value=1.1e-24  Score=147.77  Aligned_cols=107  Identities=20%  Similarity=0.306  Sum_probs=96.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|+++|..+++.+++++|++++|||++++.||+.+ ..|+..+....     ++.|+||||||+|+..          
T Consensus        59 DtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~~~~  133 (182)
T cd04172          59 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDLTTLVELSN  133 (182)
T ss_pred             ECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEeEChhhhcChhhHHHHHh
Confidence            8999999999999999999999999999999999997 79999987543     5799999999999852          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLM  112 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~  112 (142)
                         +.+..+++..+++.++..+|++|||+++.| |+++|..++..++
T Consensus       134 ~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         134 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence               358889999999999965799999999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.93  E-value=4e-24  Score=149.66  Aligned_cols=109  Identities=16%  Similarity=0.258  Sum_probs=98.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..+++.||+++|++|+|||++++.||+. +..|+..+....     +++|+|||+||+|+..          
T Consensus        67 DTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~l~~  141 (232)
T cd04174          67 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-----PSTRILLIGCKTDLRTDLSTLMELSN  141 (232)
T ss_pred             eCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccchhhhhcc
Confidence            899999999999999999999999999999999997 579999987543     5789999999999852          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~~  114 (142)
                         +.+..+++..+++.+++.+|++|||++|. ||+++|..++..++++
T Consensus       142 ~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         142 QKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence               45788899999999996469999999998 8999999999998875

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.92  E-value=3.6e-24  Score=146.22  Aligned_cols=109  Identities=21%  Similarity=0.368  Sum_probs=95.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      |||||++|..+++.|++++|++|+|||++++.||+.+. .|+..+....     +++|++||+||.|+.+ +        
T Consensus        57 Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~  131 (191)
T cd01875          57 DTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKE  131 (191)
T ss_pred             ECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhh
Confidence            89999999999999999999999999999999999996 6888775432     5799999999999854 1        


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                          .+..+++..+++.++..+|++|||++|.||+++|..+++.++..
T Consensus       132 ~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         132 QGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             ccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence                25667888899988866799999999999999999999988653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04126 Rab20 Rab20 subfamily

Probab=99.92  E-value=4.3e-24  Score=148.57  Aligned_cols=112  Identities=26%  Similarity=0.369  Sum_probs=97.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----------   69 (142)
                      ||||+++|..++..|++++|++|+|||++++.||..+..|+..+...    ...++|+|||+||+|+..           
T Consensus        50 Dt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~----~~~~~piIlVgNK~DL~~~~~~~~~~~~~  125 (220)
T cd04126          50 DTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT----ANEDCLFAVVGNKLDLTEEGALAGQEKDA  125 (220)
T ss_pred             eCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccccccccc
Confidence            89999999999999999999999999999999999999888777532    235789999999999853           


Q ss_pred             ---------CCCCHHHHHHHHHHcCC-------------ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         70 ---------RQVDINDIECFYKEHNF-------------IGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 ---------~~~~~~~~~~~~~~~~~-------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                               +.+..+++..++++.+.             .+|++|||++|.||+++|..+++.++.-..
T Consensus       126 ~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~  194 (220)
T cd04126         126 GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL  194 (220)
T ss_pred             cccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                     56778899999988762             469999999999999999999998886543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0083|consensus

Probab=99.92  E-value=3.7e-25  Score=139.40  Aligned_cols=112  Identities=34%  Similarity=0.539  Sum_probs=102.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|||+|++.+..||++||+++++||+.+..||+..+.|+.++..+.    ...+.+.+++||+|+.. +.+..++.+.
T Consensus        53 dtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~----k~~v~l~llgnk~d~a~er~v~~ddg~k  128 (192)
T KOG0083|consen   53 DTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA----KEAVALMLLGNKCDLAHERAVKRDDGEK  128 (192)
T ss_pred             eccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH----HhhHhHhhhccccccchhhccccchHHH
Confidence            899999999999999999999999999999999999999999996443    46788999999999965 8889999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      +++.++ +||+++||++|.+++-.|-.|.+.+.+.+..
T Consensus       129 la~~y~-ipfmetsaktg~nvd~af~~ia~~l~k~~~~  165 (192)
T KOG0083|consen  129 LAEAYG-IPFMETSAKTGFNVDLAFLAIAEELKKLKMG  165 (192)
T ss_pred             HHHHHC-CCceeccccccccHhHHHHHHHHHHHHhccC
Confidence            999999 6799999999999999999999999987653

>cd04131 Rnd Rnd subfamily

Probab=99.92  E-value=4.5e-24  Score=144.29  Aligned_cols=107  Identities=19%  Similarity=0.283  Sum_probs=95.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+...+     +++|++|||||+|+..          
T Consensus        55 Dt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-----~~~~iilVgnK~DL~~~~~~~~~~~~  129 (178)
T cd04131          55 DTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-----PNTKVLLVGCKTDLRTDLSTLMELSH  129 (178)
T ss_pred             ECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-----CCCCEEEEEEChhhhcChhHHHHHHh
Confidence            8999999999999999999999999999999999995 79999987544     6799999999999842          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLM  112 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~  112 (142)
                         +.+..+++..+++.++..+|++|||++|.+ |+++|..+++.++
T Consensus       130 ~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         130 QRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence               347889999999999965799999999995 9999999998655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.92  E-value=1e-23  Score=141.71  Aligned_cols=111  Identities=31%  Similarity=0.411  Sum_probs=98.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++++|||++++.||..+..|+..+.+..   ...++|+++|+||+|+.. +.+..++...
T Consensus        56 Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilvgNK~Dl~~~~~v~~~~~~~  132 (172)
T cd04141          56 DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR---LTEDIPLVLVGNKVDLESQRQVTTEEGRN  132 (172)
T ss_pred             eCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence            899999999999999999999999999999999999999987775321   335799999999999865 6678888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +++.++ .++++|||++|.||+++|.+++..+.+..
T Consensus       133 ~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         133 LAREFN-CPFFETSAALRHYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             HHHHhC-CEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            998888 57999999999999999999999888643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0081|consensus

Probab=99.91  E-value=5.3e-24  Score=137.76  Aligned_cols=113  Identities=30%  Similarity=0.488  Sum_probs=103.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|++++..++++|=+++++||++++.||-.+++|+..+..+.   -.++..+||++||+|+.+ +.+...+..+
T Consensus        73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R~Vs~~qa~~  149 (219)
T KOG0081|consen   73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---YCENPDIVLCGNKADLEDQRVVSEDQAAA  149 (219)
T ss_pred             ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh---ccCCCCEEEEcCccchhhhhhhhHHHHHH
Confidence            899999999999999999999999999999999999999999986443   346777999999999988 8889999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ++..++ +|||++||-+|.+|++..+.++..++++-.+
T Consensus       150 La~kyg-lPYfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  150 LADKYG-LPYFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             HHHHhC-CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            999999 6799999999999999999999999987644

>cd04144 Ras2 Ras2 subfamily

Probab=99.91  E-value=2.4e-23  Score=141.91  Aligned_cols=115  Identities=21%  Similarity=0.397  Sum_probs=98.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||+.+..|+..+.... .....++|+|+|+||+|+.. +.+.......
T Consensus        53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~  131 (190)
T cd04144          53 DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVK-DESAADVPIMIVGNKCDKVYEREVSTEEGAA  131 (190)
T ss_pred             ECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cccCCCCCEEEEEEChhccccCccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432 11135789999999999965 5667777778


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ++..++ .+++++||++|.|++++|.++++.+..+...
T Consensus       132 ~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~  168 (190)
T cd04144         132 LARRLG-CEFIEASAKTNVNVERAFYTLVRALRQQRQG  168 (190)
T ss_pred             HHHHhC-CEEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            888888 4699999999999999999999988766543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=2.3e-23  Score=143.16  Aligned_cols=107  Identities=31%  Similarity=0.550  Sum_probs=94.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..+++.|++++|++|+|||++++.||..+..|+..+.+.+     .++|++||+||+|+..+.+..+.. .+
T Consensus        50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~~v~~~~~-~~  123 (200)
T smart00176       50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDRKVKAKSI-TF  123 (200)
T ss_pred             ECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccCCHHHH-HH
Confidence            899999999999999999999999999999999999999999997544     589999999999986555555443 56


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +...+ .+|++|||++|.||.++|.+|+..+.+.
T Consensus       124 ~~~~~-~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      124 HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            77777 5699999999999999999999999765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04110 Rab35 Rab35 subfamily

Probab=99.91  E-value=6.3e-23  Score=140.87  Aligned_cols=112  Identities=32%  Similarity=0.580  Sum_probs=99.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++++++++++|||++++.||..+..|+..+....     ..+|+++|+||+|+.. ..+..++...
T Consensus        61 D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~piivVgNK~Dl~~~~~~~~~~~~~  135 (199)
T cd04110          61 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-----DDVCKVLVGNKNDDPERKVVETEDAYK  135 (199)
T ss_pred             eCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999999886433     5789999999999976 5567788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ  118 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~  118 (142)
                      ++...+ .+++++||+++.||+++|.+|...++......
T Consensus       136 ~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~  173 (199)
T cd04110         136 FAGQMG-ISLFETSAKENINVEEMFNCITELVLRAKKDN  173 (199)
T ss_pred             HHHHcC-CEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence            888888 56999999999999999999999999865443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04127 Rab27A Rab27a subfamily

Probab=99.91  E-value=3.2e-23  Score=139.81  Aligned_cols=110  Identities=34%  Similarity=0.536  Sum_probs=98.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||..+..|+..+....   ..++.|+++|+||+|+.+ +.+..++...
T Consensus        69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~v~~~~~~~  145 (180)
T cd04127          69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA---YCENPDIVLCGNKADLEDQRQVSEEQAKA  145 (180)
T ss_pred             eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence            899999999999999999999999999999999999999999886332   335789999999999976 6677888899


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++.++ .+++++||+++.|++++|.+|+..++++
T Consensus       146 ~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         146 LADKYG-IPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            999988 5799999999999999999999988754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04122 Rab14 Rab14 subfamily

Probab=99.91  E-value=4.8e-23  Score=137.42  Aligned_cols=108  Identities=29%  Similarity=0.479  Sum_probs=96.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.||+.+..|+..+...    ..++.|+++|+||+|+.. +.+..+.+..
T Consensus        57 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~  132 (166)
T cd04122          57 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLEAQRDVTYEEAKQ  132 (166)
T ss_pred             ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCcCHHHHHH
Confidence            89999999999999999999999999999999999999999887532    235789999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +++..+ .++++|||++|.|++++|..++..+.+
T Consensus       133 ~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         133 FADENG-LLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            998888 569999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.90  E-value=1.3e-22  Score=141.28  Aligned_cols=111  Identities=17%  Similarity=0.297  Sum_probs=96.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|++.|..+++.+|+++|++|+|||++++.||+.+ ..|...+...+     +++|+|||+||+|+..          
T Consensus        55 Dt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~  129 (222)
T cd04173          55 DTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSK  129 (222)
T ss_pred             eCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhh
Confidence            8999999999999999999999999999999999998 57877765433     6899999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHHHHhC
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~~~~~  116 (142)
                         ..+..+.+..+++..+..+|++|||+++.+ |+++|..++..++.+..
T Consensus       130 ~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         130 QRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             ccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence               136778899999999966899999999985 99999999998887554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0086|consensus

Probab=99.90  E-value=1.8e-23  Score=134.49  Aligned_cols=110  Identities=30%  Similarity=0.494  Sum_probs=100.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|++..+.||++|.++++|||+++.+||..+-+|+..++    ....+++.+||++||.|+.. +.++..+...
T Consensus        64 DTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR----~lAs~nIvviL~GnKkDL~~~R~VtflEAs~  139 (214)
T KOG0086|consen   64 DTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR----TLASPNIVVILCGNKKDLDPEREVTFLEASR  139 (214)
T ss_pred             ecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH----hhCCCcEEEEEeCChhhcChhhhhhHHHHHh
Confidence            899999999999999999999999999999999999999999884    33457888999999999988 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++++..+. +.++|+++|+++++.|-...+.++.+-
T Consensus       140 FaqEnel~-flETSa~TGeNVEEaFl~c~~tIl~kI  174 (214)
T KOG0086|consen  140 FAQENELM-FLETSALTGENVEEAFLKCARTILNKI  174 (214)
T ss_pred             hhccccee-eeeecccccccHHHHHHHHHHHHHHHH
Confidence            99998865 999999999999999999999988653

>PTZ00369 Ras-like protein; Provisional

Probab=99.90  E-value=9.3e-23  Score=138.94  Aligned_cols=112  Identities=26%  Similarity=0.448  Sum_probs=98.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..|++++|++++|||++++.||+.+..|+..+.+.   ....++|+++|+||+|+.. +.+...+...
T Consensus        59 Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~---~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~  135 (189)
T PTZ00369         59 DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRV---KDKDRVPMILVGNKCDLDSERQVSTGEGQE  135 (189)
T ss_pred             eCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999888633   2445899999999999865 5567777777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .+++++||+++.|+.++|.+|++.+.+...
T Consensus       136 ~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~  171 (189)
T PTZ00369        136 LAKSFG-IPFLETSAKQRVNVDEAFYELVREIRKYLK  171 (189)
T ss_pred             HHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            888877 579999999999999999999999877644

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.90  E-value=7.2e-23  Score=138.00  Aligned_cols=106  Identities=18%  Similarity=0.345  Sum_probs=92.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++|+|||++++.||+.+. .|+..+....     +++|+|||+||+|+..          
T Consensus        55 Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~  129 (175)
T cd01874          55 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAK  129 (175)
T ss_pred             ECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhh
Confidence            89999999999999999999999999999999999986 5988886432     5799999999999843          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                         +.+..+++..+++..+..+|++|||++|.|++++|..++..+
T Consensus       130 ~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         130 NKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             ccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence               346677788888888756799999999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04136 Rap_like Rap-like subfamily

Probab=99.90  E-value=1.1e-22  Score=134.85  Aligned_cols=107  Identities=27%  Similarity=0.480  Sum_probs=94.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++++|||++++.|++.+..|+..+...   ....++|+++|+||+|+.. +.+..+....
T Consensus        55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (163)
T cd04136          55 DTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRV---KDTENVPMVLVGNKCDLEDERVVSREEGQA  131 (163)
T ss_pred             ECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccccccceecHHHHHH
Confidence            89999999999999999999999999999999999999999888633   2346799999999999865 5566777777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +++.++ .+++++||+++.|+.++|.++++.+
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         132 LARQWG-CPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             HHHHcC-CeEEEecCCCCCCHHHHHHHHHHhc
Confidence            888888 6799999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04112 Rab26 Rab26 subfamily

Probab=99.90  E-value=3.9e-22  Score=136.06  Aligned_cols=110  Identities=35%  Similarity=0.537  Sum_probs=97.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.|++.+..|+..+....    ..++|+++|+||+|+.. +.+..++...
T Consensus        56 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~~~~~~~~~~  131 (191)
T cd04112          56 DTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA----QEDVVIMLLGNKADMSGERVVKREDGER  131 (191)
T ss_pred             eCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEcccchhccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    34789999999999964 5566778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..++ .+++++||++|.|++++|.+|++.+....
T Consensus       132 l~~~~~-~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         132 LAKEYG-VPFMETSAKTGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            888887 57999999999999999999999998774

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.90  E-value=2.5e-22  Score=134.26  Aligned_cols=110  Identities=27%  Similarity=0.513  Sum_probs=96.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|++.+..|+..+..........++|+++|+||+|+..+.+..+++..+
T Consensus        60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  139 (170)
T cd04116          60 DTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAW  139 (170)
T ss_pred             eCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHH
Confidence            89999999999999999999999999999999999999999887644322223579999999999997666778889999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +..++..+++++||+++.|+.++|..+++.
T Consensus       140 ~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         140 CRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             HHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            998886679999999999999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=1.4e-22  Score=141.16  Aligned_cols=108  Identities=31%  Similarity=0.538  Sum_probs=94.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..|++++|++|+|||++++.||..+..|+..+...+     .++|++||+||+|+..+.+..+.+ .+
T Consensus        68 Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~~v~~~~~-~~  141 (219)
T PLN03071         68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQV-TF  141 (219)
T ss_pred             ECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhhccCCHHHH-HH
Confidence            899999999999999999999999999999999999999999987543     679999999999986555555555 66


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +...+ .+|++|||++|.|+.++|.+|+..+.+..
T Consensus       142 ~~~~~-~~~~e~SAk~~~~i~~~f~~l~~~~~~~~  175 (219)
T PLN03071        142 HRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (219)
T ss_pred             HHhcC-CEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence            66666 56999999999999999999999987653

>cd04134 Rho3 Rho3 subfamily

Probab=99.90  E-value=1.5e-22  Score=137.97  Aligned_cols=110  Identities=25%  Similarity=0.401  Sum_probs=94.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      ||||+++|..+++.+++++|++++|||++++.||+.+. .|+..+....     +++|++||+||+|+.. +        
T Consensus        54 Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~  128 (189)
T cd04134          54 DTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQR  128 (189)
T ss_pred             ECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhh
Confidence            89999999999999999999999999999999999886 6988886433     5799999999999864 2        


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                          .+..++...++...+..+|++|||++|.|++++|.++++.++...
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         129 YGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence                245566777888877667999999999999999999999998654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.89  E-value=5.9e-22  Score=137.24  Aligned_cols=112  Identities=30%  Similarity=0.546  Sum_probs=99.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||+.+..|+..+....   .....|+++|+||+|+.. +.+..+....
T Consensus        58 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~---~~~~~~iilvgNK~Dl~~~~~v~~~~~~~  134 (211)
T cd04111          58 DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI---QPHRPVFILVGHKCDLESQRQVTREEAEK  134 (211)
T ss_pred             eCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEccccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999999886432   334678999999999976 6678888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++.++ .+++++||+++.|++++|..|++.+.++..
T Consensus       135 ~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~  170 (211)
T cd04111         135 LAKDLG-MKYIETSARTGDNVEEAFELLTQEIYERIK  170 (211)
T ss_pred             HHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999988 679999999999999999999999887743

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.89  E-value=1.6e-22  Score=136.25  Aligned_cols=105  Identities=23%  Similarity=0.343  Sum_probs=92.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..+++.+++++|++|+|||++++.||..+. .|+..+....     +++|+++|+||+|+..          
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~  129 (174)
T cd01871          55 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE  129 (174)
T ss_pred             ECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhh
Confidence            89999999999999999999999999999999999985 6888775332     5799999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                         +.+..+++..+++.++..++++|||++|.|++++|..+++.
T Consensus       130 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         130 KKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence               13678888889999986679999999999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.89  E-value=1.6e-22  Score=138.48  Aligned_cols=102  Identities=22%  Similarity=0.294  Sum_probs=89.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++  .+.+.+++++|++++|||++++.||+.+. .|+..+...+     +++|++||+||+|+..          
T Consensus        72 DTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~  144 (195)
T cd01873          72 DTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRAR  144 (195)
T ss_pred             eCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcc
Confidence            8999986  35677999999999999999999999986 5988886443     5789999999999852          


Q ss_pred             ----------CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         70 ----------RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        70 ----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                                +.+..+++..+++.+++ +|++|||++|.||+++|..++++
T Consensus       145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         145 RPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence                      56788999999999995 79999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04175 Rap1 Rap1 subgroup

Probab=99.89  E-value=2.8e-22  Score=133.31  Aligned_cols=107  Identities=27%  Similarity=0.471  Sum_probs=94.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||+.+..|+..+...   ....+.|+++|+||+|+.. +.+.......
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (164)
T cd04175          55 DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDLEDERVVGKEQGQN  131 (164)
T ss_pred             ECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence            89999999999999999999999999999999999999999888632   2446899999999999975 4556667777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +++.++ .+++++||+++.|+.++|.+++..+
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         132 LARQWG-CAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             HHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            888887 5799999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=5.6e-22  Score=132.41  Aligned_cols=108  Identities=32%  Similarity=0.574  Sum_probs=96.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||..+..|+..+.+.    ...++|+++|+||+|+.+ +.+..++...
T Consensus        58 D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  133 (167)
T cd01867          58 DTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNKCDMEEKRVVSKEEGEA  133 (167)
T ss_pred             eCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999999988643    235789999999999976 5567778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++||+++.|++++|.++++.+..
T Consensus       134 ~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         134 LADEYG-IKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            888888 579999999999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.89  E-value=2.3e-22  Score=134.89  Aligned_cols=108  Identities=24%  Similarity=0.373  Sum_probs=94.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      ||||+++|..+++.+++++|++|+|||++++.||+.+. .|+..+....     +++|+++|+||+|+.. .        
T Consensus        52 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  126 (174)
T smart00174       52 DTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-----PNTPIILVGTKLDLREDKSTLRELSK  126 (174)
T ss_pred             ECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEecChhhhhChhhhhhhhc
Confidence            89999999999999999999999999999999999985 6988886433     6899999999999854 1        


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                          .+..++...+++.++..++++|||+++.|++++|..++..+++
T Consensus       127 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      127 QKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             ccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence                2667778889999986679999999999999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.89  E-value=6.5e-22  Score=131.79  Aligned_cols=108  Identities=36%  Similarity=0.610  Sum_probs=95.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||..+..|+..+....    ..+.|+++|+||+|+.. +.+..+....
T Consensus        57 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~  132 (166)
T cd01869          57 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTDKRVVDYSEAQE  132 (166)
T ss_pred             ECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC----CCCCcEEEEEEChhcccccCCCHHHHHH
Confidence            899999999999999999999999999999999999999999886332    35789999999999865 5677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++...+ .+++++||++|.|++++|..+++.+.+
T Consensus       133 ~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         133 FADELG-IPFLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             HHHHcC-CeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            888888 579999999999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04109 Rab28 Rab28 subfamily

Probab=99.89  E-value=1e-21  Score=136.32  Aligned_cols=112  Identities=28%  Similarity=0.288  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||++.|..++..|++++|++|+|||++++.||+.+..|+..+.+... ....++|+++|+||+|+.. +.+..+....
T Consensus        56 Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~  134 (215)
T cd04109          56 DIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLK-SSETQPLVVLVGNKTDLEHNRTVKDDKHAR  134 (215)
T ss_pred             ECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-ccCCCceEEEEEECcccccccccCHHHHHH
Confidence            8999999999999999999999999999999999999999998875431 1124578999999999975 6778888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++.++ .+++++||++|.|++++|.+++..+...
T Consensus       135 ~~~~~~-~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         135 FAQANG-MESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            999888 5699999999999999999999998865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04176 Rap2 Rap2 subgroup

Probab=99.89  E-value=4.5e-22  Score=132.13  Aligned_cols=107  Identities=27%  Similarity=0.440  Sum_probs=92.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..|++++|++++|||++++.||..+..|+..+...   ....++|+++|+||+|+.. +.+.......
T Consensus        55 Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piviv~nK~Dl~~~~~~~~~~~~~  131 (163)
T cd04176          55 DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV---KGYEKVPIILVGNKVDLESEREVSSAEGRA  131 (163)
T ss_pred             ECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccchhcCccCHHHHHH
Confidence            89999999999999999999999999999999999999998888633   2336899999999999865 5556667777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++..++ .+++++||+++.|+.++|.++++.+
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         132 LAEEWG-CPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             HHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence            887777 5799999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01865 Rab3 Rab3 subfamily

Probab=99.89  E-value=9.2e-22  Score=131.14  Aligned_cols=108  Identities=31%  Similarity=0.545  Sum_probs=94.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.+++.+..|+..+...    ....+|+++|+||+|+.+ +.+..+....
T Consensus        56 Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~  131 (165)
T cd01865          56 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVILVGNKCDMEDERVVSSERGRQ  131 (165)
T ss_pred             ECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCCEEEEEECcccCcccccCHHHHHH
Confidence            89999999999999999999999999999999999999999988532    234789999999999976 5566777778


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++...+. +++++||+++.|+.++|.+++..+.+
T Consensus       132 ~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         132 LADQLGF-EFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             HHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            8888874 69999999999999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=99.89  E-value=5.7e-22  Score=131.80  Aligned_cols=105  Identities=30%  Similarity=0.493  Sum_probs=94.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++++|++++|||++++.||+.+..|+..+...    ...++|+++|+||.|+.. +.+..++...
T Consensus        55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~~~~~~  130 (161)
T cd04117          55 DTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNKADEEQKRQVGDEQGNK  130 (161)
T ss_pred             eCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999999988532    234799999999999976 6677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +++.++ .+|+++||++|.|++++|.+|++.
T Consensus       131 ~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         131 LAKEYG-MDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHhh
Confidence            998888 679999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04125 RabA_like RabA-like subfamily

Probab=99.89  E-value=1.8e-21  Score=132.40  Aligned_cols=111  Identities=31%  Similarity=0.556  Sum_probs=98.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||..+..|+..+....    ...+|+++|+||+|+.+ +.+..+....
T Consensus        55 Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~----~~~~~~ivv~nK~Dl~~~~~v~~~~~~~  130 (188)
T cd04125          55 DTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA----RENVIKVIVANKSDLVNNKVVDSNIAKS  130 (188)
T ss_pred             ECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECCCCcccccCCHHHHHH
Confidence            899999999999999999999999999999999999999999886432    34689999999999875 5667777788


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...++ +++++||+++.|++++|.+++..++++..
T Consensus       131 ~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~~~~~  166 (188)
T cd04125         131 FCDSLNI-PFFETSAKQSINVEEAFILLVKLIIKRLE  166 (188)
T ss_pred             HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            8888874 79999999999999999999999988654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.88  E-value=1.4e-21  Score=132.69  Aligned_cols=111  Identities=27%  Similarity=0.423  Sum_probs=97.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-----CCCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-----RQVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----~~~~~   74 (142)
                      ||||+++|..+++.+++++|++++|||++++.||+.+. .|+..+....     +++|+|+|+||+|+..     +.+..
T Consensus        55 Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~  129 (187)
T cd04132          55 DTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTP  129 (187)
T ss_pred             ECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCH
Confidence            89999999999999999999999999999999999985 5888775433     5799999999999854     23567


Q ss_pred             HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      .....++..++..+++++||++|.|+.++|..++..++....
T Consensus       130 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  171 (187)
T cd04132         130 AQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence            788889999886579999999999999999999999998754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0097|consensus

Probab=99.88  E-value=6.3e-22  Score=126.08  Aligned_cols=112  Identities=28%  Similarity=0.468  Sum_probs=102.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|||+|+..+++||+++.+.++|||++...++..+..|+...    +....++..++|++||.|+.. +.++-++..+
T Consensus        66 dtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~da----r~ltnpnt~i~lignkadle~qrdv~yeeak~  141 (215)
T KOG0097|consen   66 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA----RNLTNPNTVIFLIGNKADLESQRDVTYEEAKE  141 (215)
T ss_pred             ecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhh----hccCCCceEEEEecchhhhhhcccCcHHHHHH
Confidence            89999999999999999999999999999999999999999887    445668888999999999987 8899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ++.+.|.. |+++||++|.++++.|-...+.+.++-..
T Consensus       142 faeengl~-fle~saktg~nvedafle~akkiyqniqd  178 (215)
T KOG0097|consen  142 FAEENGLM-FLEASAKTGQNVEDAFLETAKKIYQNIQD  178 (215)
T ss_pred             HHhhcCeE-EEEecccccCcHHHHHHHHHHHHHHhhhc
Confidence            99999965 99999999999999999999888876433

>cd01864 Rab19 Rab19 subfamily

Probab=99.88  E-value=1.3e-21  Score=130.37  Aligned_cols=106  Identities=32%  Similarity=0.565  Sum_probs=94.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+...    ...++|+++|+||+|+.. +.+..+....
T Consensus        58 D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  133 (165)
T cd01864          58 DTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNKCDLEEQREVLFEEACT  133 (165)
T ss_pred             ECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999998532    235799999999999976 5667778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +++.++...++++||++|.|++++|..+++.
T Consensus       134 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         134 LAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             HHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            8888886678999999999999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.88  E-value=1.6e-21  Score=129.21  Aligned_cols=104  Identities=31%  Similarity=0.587  Sum_probs=93.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+....     .++|+++|+||+|+.. ..+..+++..
T Consensus        57 D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~v~~~~~~~  131 (162)
T cd04106          57 DTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKIDLLDQAVITNEEAEA  131 (162)
T ss_pred             eCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhcccccCCCHHHHHH
Confidence            899999999999999999999999999999999999999998886433     6899999999999865 5667778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +++..+ .+++++||+++.|++++|.+|...
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         132 LAKRLQ-LPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             HHHHcC-CeEEEEECCCCCCHHHHHHHHHHh
Confidence            888888 479999999999999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.88  E-value=1.8e-21  Score=128.59  Aligned_cols=107  Identities=26%  Similarity=0.449  Sum_probs=93.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..|++++|++++|||++++.++..+..|+..+.+..   ...++|+++|+||+|+..+.+.......+
T Consensus        55 Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~  131 (162)
T cd04138          55 DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK---DSDDVPMVLVGNKCDLAARTVSSRQGQDL  131 (162)
T ss_pred             ECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccceecHHHHHHH
Confidence            899999999999999999999999999999999999999988886432   44679999999999997655667777788


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +...+ .+++++||++|.|++++|.++++.+
T Consensus       132 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         132 AKSYG-IPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             HHHhC-CeEEEecCCCCCCHHHHHHHHHHHh
Confidence            88877 4699999999999999999998653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.88  E-value=1.6e-21  Score=129.41  Aligned_cols=107  Identities=30%  Similarity=0.490  Sum_probs=93.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++++|||++++.++..+..|+..+.+..   ...++|+++|+||+|+.. +.+..+....
T Consensus        56 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~Dl~~~~~~~~~~~~~  132 (164)
T cd04145          56 DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK---DRDEFPMILVGNKADLEHQRKVSREEGQE  132 (164)
T ss_pred             ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCCEEEEeeCccccccceecHHHHHH
Confidence            899999999999999999999999999999999999999998886432   345789999999999865 4566677788


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...+ .+++++||++|.|+.++|.+++..+
T Consensus       133 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         133 LARKLK-IPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             HHHHcC-CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            888887 4699999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.88  E-value=3.1e-21  Score=129.46  Aligned_cols=109  Identities=28%  Similarity=0.371  Sum_probs=92.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--CCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--QVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--~~~~~~~   77 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+...   ......|+++|+||.|+.. .  .+..+.+
T Consensus        55 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~  131 (170)
T cd04108          55 DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKE---NDPSSVLLFLVGTKKDLSSPAQYALMEQDA  131 (170)
T ss_pred             eCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCeEEEEEEChhcCccccccccHHHH
Confidence            89999999999999999999999999999999999999999887532   1233578999999999854 2  2345666


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..++..++ .+++++||+++.|++++|..++..+.+
T Consensus       132 ~~~~~~~~-~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         132 IKLAAEMQ-AEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            77777777 469999999999999999999988854

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04124 RabL2 RabL2 subfamily

Probab=99.88  E-value=2.5e-21  Score=128.68  Aligned_cols=106  Identities=32%  Similarity=0.513  Sum_probs=90.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..+++.+++++|++++|||++++.++..+..|+..+....     +++|+++|+||+|+...  ..+....+
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~ivv~nK~Dl~~~--~~~~~~~~  127 (161)
T cd04124          55 DTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-----PEIPCIVVANKIDLDPS--VTQKKFNF  127 (161)
T ss_pred             eCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEECccCchh--HHHHHHHH
Confidence            899999999999999999999999999999999999999999886433     57999999999998431  23344456


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +...+ .+++++||++|.|++++|..+++.++++
T Consensus       128 ~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         128 AEKHN-LPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            66666 5799999999999999999999988765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04118 Rab24 Rab24 subfamily

Probab=99.88  E-value=7.6e-21  Score=129.67  Aligned_cols=110  Identities=31%  Similarity=0.486  Sum_probs=94.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-----CCCCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-----RQVDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----~~~~~~   75 (142)
                      ||||+++|..++..+++++|++++|||++++.|++.+..|+..+....     .++|+++|+||+|+..     +.+..+
T Consensus        56 D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~  130 (193)
T cd04118          56 DTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQDRSLRQVDFH  130 (193)
T ss_pred             ECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEcccccccccccCccCHH
Confidence            899999999999999999999999999999999999999998885322     4799999999999853     234556


Q ss_pred             HHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         76 DIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        76 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      .+..++..++ .+++++||+++.|++++|+++.+.+.++..
T Consensus       131 ~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  170 (193)
T cd04118         131 DVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            6777788777 569999999999999999999999987643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.88  E-value=2.5e-21  Score=128.61  Aligned_cols=108  Identities=27%  Similarity=0.465  Sum_probs=94.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+.+..   ...++|+++|+||+|+.. +.+..+....
T Consensus        54 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pii~v~nK~Dl~~~~~~~~~~~~~  130 (164)
T smart00173       54 DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVK---DRDDVPIVLVGNKCDLESERVVSTEEGKE  130 (164)
T ss_pred             ECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceEcHHHHHH
Confidence            899999999999999999999999999999999999999988876432   335789999999999876 5566677778


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ++..++ .+++++||+++.|++++|++|+..+.
T Consensus       131 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      131 LARQWG-CPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             HHHHcC-CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            888887 67999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.87  E-value=2.7e-21  Score=129.26  Aligned_cols=106  Identities=31%  Similarity=0.532  Sum_probs=91.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++.++|++|+|||++++.|+..+..|+..+....     .++|+++|+||+|+..+.+.. ....+
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piiiv~nK~Dl~~~~~~~-~~~~~  128 (166)
T cd00877          55 DTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----GNIPIVLCGNKVDIKDRKVKA-KQITF  128 (166)
T ss_pred             ECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhcccccCCH-HHHHH
Confidence            899999999999999999999999999999999999999999997544     489999999999987533333 33456


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +...+ .+++++||++|.|++++|.+|+..+.+
T Consensus       129 ~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         129 HRKKN-LQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             HHHcC-CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            66655 569999999999999999999999875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.87  E-value=2.8e-21  Score=128.36  Aligned_cols=111  Identities=23%  Similarity=0.402  Sum_probs=95.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc-CCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL-SDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||+++|..++..+++++|++|+|||++++.|+..+..|+..+...... ....+.|+++|+||+|+.. +.+..+...
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  134 (168)
T cd04119          55 DLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGR  134 (168)
T ss_pred             ECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHH
Confidence            89999999999999999999999999999999999999999988754310 0125689999999999964 556788888


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .++...+ .+++++||+++.|++++|..|++.++
T Consensus       135 ~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         135 LWAESKG-FKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            8888888 56999999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03110 Rab GTPase; Provisional

Probab=99.87  E-value=5.4e-21  Score=132.89  Aligned_cols=110  Identities=29%  Similarity=0.499  Sum_probs=97.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++++++++|+|||++++.||+.+..|+..+...    ...++|+++|+||+|+.. +.+..+....
T Consensus        67 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~  142 (216)
T PLN03110         67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH----ADSNIVIMMAGNKSDLNHLRSVAEEDGQA  142 (216)
T ss_pred             ECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh----CCCCCeEEEEEEChhcccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999999888533    235799999999999865 6677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..++ .+++++||++|.|++++|..++..+.+..
T Consensus       143 l~~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i~~~~  177 (216)
T PLN03110        143 LAEKEG-LSFLETSALEATNVEKAFQTILLEIYHII  177 (216)
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            888887 57999999999999999999999988743

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=2.4e-21  Score=128.45  Aligned_cols=107  Identities=32%  Similarity=0.590  Sum_probs=98.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++++|++|+|||++++.||..+..|+..+....    ..++|++||+||.|+.. +.+..+++..
T Consensus        54 D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~----~~~~~iivvg~K~D~~~~~~v~~~~~~~  129 (162)
T PF00071_consen   54 DTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK----PEDIPIIVVGNKSDLSDEREVSVEEAQE  129 (162)
T ss_dssp             EETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS----TTTSEEEEEEETTTGGGGSSSCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc----cccccceeeeccccccccccchhhHHHH
Confidence            789999999999999999999999999999999999999999997555    14689999999999986 7889999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .+|++|||+++.|+.++|..+++.+.
T Consensus       130 ~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  130 FAKELG-VPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHTT-SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHhC-CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999 78999999999999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04128 Spg1 Spg1p

Probab=99.87  E-value=2.8e-21  Score=131.06  Aligned_cols=107  Identities=22%  Similarity=0.295  Sum_probs=90.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC------CCCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH------RQVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------~~~~~   74 (142)
                      ||+|+++|..+++.+++++|++++|||++++.||..+..|+..+....    ....| |+|+||+|+..      .....
T Consensus        55 Dt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~----~~~~p-ilVgnK~Dl~~~~~~~~~~~~~  129 (182)
T cd04128          55 DLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN----KTAIP-ILVGTKYDLFADLPPEEQEEIT  129 (182)
T ss_pred             eCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCE-EEEEEchhccccccchhhhhhH
Confidence            899999999999999999999999999999999999999999886432    23456 68999999842      11224


Q ss_pred             HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +....+++.++ .++++|||++|.|++++|.+++..+++
T Consensus       130 ~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         130 KQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            56677888888 579999999999999999999998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0095|consensus

Probab=99.87  E-value=2.4e-22  Score=128.91  Aligned_cols=110  Identities=31%  Similarity=0.447  Sum_probs=96.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||||++++.+||+.|+++|+|||++-.+||+-+..|+.++..+.    ...+--|||+||+|+.+ +.++....+.
T Consensus        62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya----n~kvlkilvgnk~d~~drrevp~qigee  137 (213)
T KOG0095|consen   62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA----NNKVLKILVGNKIDLADRREVPQQIGEE  137 (213)
T ss_pred             eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh----hcceEEEeeccccchhhhhhhhHHHHHH
Confidence            899999999999999999999999999999999999999999996544    35677799999999988 6788888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +..... ..|+++||+...+++.+|..+...+....
T Consensus       138 fs~~qd-myfletsakea~nve~lf~~~a~rli~~a  172 (213)
T KOG0095|consen  138 FSEAQD-MYFLETSAKEADNVEKLFLDLACRLISEA  172 (213)
T ss_pred             HHHhhh-hhhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence            888866 44899999999999999999987776543

>cd01868 Rab11_like Rab11-like

Probab=99.87  E-value=4.3e-21  Score=127.64  Aligned_cols=106  Identities=34%  Similarity=0.618  Sum_probs=93.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.++++++++++|||++++.|+..+..|+..+....    ..++|+++|+||+|+.. +.+..++...
T Consensus        58 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pi~vv~nK~Dl~~~~~~~~~~~~~  133 (165)
T cd01868          58 DTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLRAVPTEEAKA  133 (165)
T ss_pred             eCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccccCCHHHHHH
Confidence            899999999999999999999999999999999999999999886433    23689999999999876 6667778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...+ .+++++||++|.|+.++|++++..+
T Consensus       134 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         134 FAEKNG-LSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            888777 5699999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=99.87  E-value=4.9e-21  Score=128.03  Aligned_cols=108  Identities=33%  Similarity=0.578  Sum_probs=96.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+...    ..+++|+++|+||.|+.. +.+..++...
T Consensus        59 Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~~  134 (168)
T cd01866          59 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNKCDLESRREVSYEEGEA  134 (168)
T ss_pred             ECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999999988532    236799999999999975 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++...+ .+++++||+++.|++++|..+.+.+++
T Consensus       135 ~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         135 FAKEHG-LIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            888887 569999999999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03118 Rab family protein; Provisional

Probab=99.87  E-value=1.4e-20  Score=130.29  Aligned_cols=111  Identities=32%  Similarity=0.463  Sum_probs=94.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||+++|..++..+++++|++|+|||++++.||..+.. |...+....   ...+.|+++|+||+|+.. +.+..+...
T Consensus        68 Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~~i~~~~~~  144 (211)
T PLN03118         68 DTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESERDVSREEGM  144 (211)
T ss_pred             ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHH
Confidence            899999999999999999999999999999999999875 655554221   235689999999999865 556677777


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .++..++ .+++++||+++.|++++|..|...+.+..
T Consensus       145 ~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        145 ALAKEHG-CLFLECSAKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            8888887 46999999999999999999999998754

>cd04140 ARHI_like ARHI subfamily

Probab=99.87  E-value=4.9e-21  Score=127.65  Aligned_cols=108  Identities=28%  Similarity=0.368  Sum_probs=92.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+.... .....++|+++|+||+|+.. +.+.......
T Consensus        55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  133 (165)
T cd04140          55 DTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIK-GNNIEKIPIMLVGNKCDESHKREVSSNEGAA  133 (165)
T ss_pred             ECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCCEEEEEECccccccCeecHHHHHH
Confidence            899999999999999999999999999999999999999988775432 11235799999999999976 5666777777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ++..++ .++++|||++|.|++++|++|+..
T Consensus       134 ~~~~~~-~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         134 CATEWN-CAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             HHHHhC-CcEEEeecCCCCCHHHHHHHHHhc
Confidence            888777 469999999999999999998754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04177 RSR1 RSR1 subgroup

Probab=99.86  E-value=7.4e-21  Score=127.10  Aligned_cols=109  Identities=26%  Similarity=0.394  Sum_probs=95.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.++++++++++|||++++.+++....|...+.+..   ...++|+++++||.|+.. +.+..+....
T Consensus        55 Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~D~~~~~~~~~~~~~~  131 (168)
T cd04177          55 DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK---DSDNVPMVLVGNKADLEDDRQVSREDGVS  131 (168)
T ss_pred             eCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEEChhccccCccCHHHHHH
Confidence            899999999999999999999999999999999999999988886422   346899999999999875 5566677777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++..+++++||+++.|++++|.+++.+++
T Consensus       132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         132 LSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             HHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            888887667999999999999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0393|consensus

Probab=99.86  E-value=1.2e-21  Score=132.29  Aligned_cols=110  Identities=22%  Similarity=0.369  Sum_probs=101.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||||.|.++++..|.++|+++++|++.++.||.. ...|+.++.+++     +++|+||||+|.|+..          
T Consensus        59 DTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vpiiLVGtk~DLr~d~~~~~~l~~  133 (198)
T KOG0393|consen   59 DTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-----PNVPIILVGTKADLRDDPSTLEKLQR  133 (198)
T ss_pred             ecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCCEEEEeehHHhhhCHHHHHHHHh
Confidence            899999999999999999999999999999999998 459999999888     9999999999999963          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                         ..++.+++..++++.|...|++|||++..|+.++|+..+..++...
T Consensus       134 ~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  134 QGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             ccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence               2578889999999999888999999999999999999999998764

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.86  E-value=9.8e-21  Score=125.74  Aligned_cols=105  Identities=24%  Similarity=0.445  Sum_probs=91.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++++|||++++.|+..+..|+..+....     .++|+++|+||+|+.+ ..+.......
T Consensus        58 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~  132 (164)
T cd04101          58 DSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADKAEVTDAQAQA  132 (164)
T ss_pred             ECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccCCCHHHHHH
Confidence            899999999999999999999999999999999999999998886432     5699999999999865 4556666666


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +....+ .+++++||+++.|++++|..+++.+
T Consensus       133 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         133 FAQANQ-LKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHHHcC-CeEEEEeCCCCCChHHHHHHHHHHh
Confidence            777767 5699999999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0395|consensus

Probab=99.86  E-value=1.8e-20  Score=128.22  Aligned_cols=110  Identities=25%  Similarity=0.463  Sum_probs=101.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++.|..+...|++++|++++||++++..||+.+..++..+.   +......+|+++||||+|+.. +.+..+++..
T Consensus        57 Dt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~---r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~  133 (196)
T KOG0395|consen   57 DTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQIL---RVKGRDDVPIILVGNKCDLERERQVSEEEGKA  133 (196)
T ss_pred             cCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHH---HhhCcCCCCEEEEEEcccchhccccCHHHHHH
Confidence            899999999999999999999999999999999999999998885   333556799999999999987 8999999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++..+++ +|+++||+.+.+++++|..|++.+-..
T Consensus       134 la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~~~  167 (196)
T KOG0395|consen  134 LARSWGC-AFIETSAKLNYNVDEVFYELVREIRLP  167 (196)
T ss_pred             HHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence            9999995 599999999999999999999998873

>PLN03108 Rab family protein; Provisional

Probab=99.86  E-value=2.5e-20  Score=128.99  Aligned_cols=110  Identities=32%  Similarity=0.565  Sum_probs=97.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||..+..|+..+...    .....|+++|+||+|+.. +.+..+++..
T Consensus        61 Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~  136 (210)
T PLN03108         61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQ  136 (210)
T ss_pred             eCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999998877532    235799999999999976 5677888899


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +++.++ .+++++||+++.|++++|.+++..++++.
T Consensus       137 ~~~~~~-~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        137 FAKEHG-LIFMEASAKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            999888 56999999999999999999999998754

>cd04113 Rab4 Rab4 subfamily

Probab=99.86  E-value=1.1e-20  Score=125.13  Aligned_cols=105  Identities=32%  Similarity=0.506  Sum_probs=94.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...    ..+++|+++|+||+|+.. +.+..++...
T Consensus        55 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~  130 (161)
T cd04113          55 DTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNKSDLADQREVTFLEASR  130 (161)
T ss_pred             ECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcchhccCCHHHHHH
Confidence            89999999999999999999999999999999999999999887432    236899999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ++...+ .+++++||+++.|+.++|.++++.
T Consensus       131 ~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         131 FAQENG-LLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             HHHHcC-CEEEEEECCCCCCHHHHHHHHHHh
Confidence            999988 679999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.86  E-value=7.3e-21  Score=126.32  Aligned_cols=102  Identities=18%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~   77 (142)
                      ||+|++.     ..+++++|++++|||++++.||+.+..|+..+....   ...++|+++|+||.|+..   +.+..+++
T Consensus        53 D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~~~v~~~~~  124 (158)
T cd04103          53 DEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR---NISEIPLILVGTQDAISESNPRVIDDARA  124 (158)
T ss_pred             ECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence            7999985     347789999999999999999999999999986432   335789999999999842   56788888


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ..+++..+..+|++|||+++.||+++|..+++.
T Consensus       125 ~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         125 RQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            888887654569999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.86  E-value=2e-20  Score=125.32  Aligned_cols=107  Identities=32%  Similarity=0.508  Sum_probs=93.4

Q ss_pred             CCCcchhhh-hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||+++|. .+++.+++++|++++|||++++.|+..+..|+..+....   ...++|+++|+||+|+.. +.+......
T Consensus        57 Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  133 (170)
T cd04115          57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS---LPNEVPRILVGNKCDLREQIQVPTDLAQ  133 (170)
T ss_pred             eCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc---CCCCCCEEEEEECccchhhcCCCHHHHH
Confidence            899999997 578999999999999999999999999999998886432   346799999999999876 667778888


Q ss_pred             HHHHHcCCceEEEeeccC---CCCHHHHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKE---GLMVNDSMKFLLDVL  111 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~---~~~i~~l~~~l~~~~  111 (142)
                      .++...+ .+++++||++   +.+++++|..++..+
T Consensus       134 ~~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         134 RFADAHS-MPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            8888887 6699999999   889999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.86  E-value=1.2e-20  Score=126.71  Aligned_cols=104  Identities=19%  Similarity=0.337  Sum_probs=90.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..+++.+++++|++++|||++++.||+.+. .|+..+....     +++|+++|+||+|+..          
T Consensus        54 Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  128 (173)
T cd04130          54 DTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTDVNVLIQLAR  128 (173)
T ss_pred             ECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccChhHHHHHhh
Confidence            89999999999999999999999999999999999874 6888875322     5799999999999852          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                         +.+..++...+++..+..++++|||++|.|++++|+.++-
T Consensus       129 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         129 YGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             cCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence               3467778888999888657999999999999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01862 Rab7 Rab7 subfamily

Probab=99.85  E-value=5.7e-20  Score=122.75  Aligned_cols=114  Identities=30%  Similarity=0.532  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||++.|..++..+++++|++|+|||++++.++.....|...+..........++|+++|+||+|+.. .....+....
T Consensus        55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  134 (172)
T cd01862          55 DTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ  134 (172)
T ss_pred             eCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999888988765443222334799999999999974 5566778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++..+..+++++|+++|.|++++|.++...+++.
T Consensus       135 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         135 WCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             HHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            88888867799999999999999999999988875

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.85  E-value=3.4e-20  Score=122.89  Aligned_cols=108  Identities=35%  Similarity=0.589  Sum_probs=95.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.+++.+..|+..+..+.    .+++|+++|+||+|+.. ..+..+....
T Consensus        55 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~----~~~~pivvv~nK~D~~~~~~~~~~~~~~  130 (164)
T smart00175       55 DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA----DPNVVIMLVGNKSDLEDQRQVSREEAEA  130 (164)
T ss_pred             ECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEEchhcccccCCCHHHHHH
Confidence            899999999999999999999999999999999999999998885332    25899999999999876 5567788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++|++++.|++++|..+...+.+
T Consensus       131 ~~~~~~-~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      131 FAEEHG-LPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            888888 569999999999999999999998764

Rab GTPases are implicated in vesicle trafficking.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.85  E-value=3e-20  Score=125.90  Aligned_cols=110  Identities=16%  Similarity=0.244  Sum_probs=84.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |||||++|..+|..|++++|++|+|||++++.++.....|+..+.   ......++|++||+||.|+... ...+++...
T Consensus        67 D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l---~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~  142 (181)
T PLN00223         67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANKQDLPNA-MNAAEITDK  142 (181)
T ss_pred             ECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHh---cCHhhCCCCEEEEEECCCCCCC-CCHHHHHHH
Confidence            899999999999999999999999999999999988877776654   2212357999999999998652 333443332


Q ss_pred             HHHcCC----ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNF----IGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +.....    ..++++||++|+|+.++|++|...+.++
T Consensus       143 l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             hCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence            221110    1255799999999999999999887654

>cd04149 Arf6 Arf6 subfamily

Probab=99.85  E-value=2.2e-20  Score=125.07  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=84.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..+++.+++++|++|+|||++++.++.....|+..+..   .....++|++||+||+|+.. .+..+++..+
T Consensus        59 Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~  134 (168)
T cd04149          59 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIIN---DREMRDALLLVFANKQDLPD-AMKPHEIQEK  134 (168)
T ss_pred             ECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhc---CHhhcCCcEEEEEECcCCcc-CCCHHHHHHH
Confidence            8999999999999999999999999999999999988888766642   11235789999999999864 3456666665


Q ss_pred             HHHcC----CceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEHN----FIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~~----~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +....    ..+++++||++|.|+.++|++|..
T Consensus       135 ~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         135 LGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             cCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            43211    135889999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04135 Tc10 TC10 subfamily

Probab=99.84  E-value=2.9e-20  Score=124.67  Aligned_cols=106  Identities=20%  Similarity=0.303  Sum_probs=92.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.||+.+. .|+..+...     .+++|+++|+||+|+.+          
T Consensus        54 Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~  128 (174)
T cd04135          54 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLND  128 (174)
T ss_pred             eCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhh
Confidence            89999999999999999999999999999999999875 688777532     36899999999999854          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                         +.+..+++..+++..+..++++|||++|.|++++|..++..+
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         129 MKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             ccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence               146677888889988876799999999999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01863 Rab18 Rab18 subfamily

Probab=99.84  E-value=7.2e-20  Score=121.21  Aligned_cols=106  Identities=32%  Similarity=0.505  Sum_probs=94.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+.++.   ...++|+++|+||+|+.......+....+
T Consensus        55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~~~iv~nK~D~~~~~~~~~~~~~~  131 (161)
T cd01863          55 DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS---TNNDIVKMLVGNKIDKENREVTREEGLKF  131 (161)
T ss_pred             ECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC---CCCCCcEEEEEECCcccccccCHHHHHHH
Confidence            899999999999999999999999999999999999999999887443   45689999999999997656677788888


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +...+ .+++++||++|.|+++++..+...
T Consensus       132 ~~~~~-~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         132 ARKHN-MLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             HHHcC-CEEEEEecCCCCCHHHHHHHHHHh
Confidence            88887 569999999999999999998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04158 ARD1 ARD1 subfamily

Probab=99.84  E-value=4e-20  Score=123.79  Aligned_cols=111  Identities=11%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++.....|+..+.+   .....+.|+++|+||+|+.. .+..+++..+
T Consensus        49 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~  124 (169)
T cd04158          49 DVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANKQDVAG-ALSVEEMTEL  124 (169)
T ss_pred             ECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeCcCccc-CCCHHHHHHH
Confidence            8999999999999999999999999999999999999999888752   22234689999999999864 4566666666


Q ss_pred             HHHcCC-----ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNF-----IGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +...+.     ..+++|||++|.|+.++|.+|.+.+....
T Consensus       125 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         125 LSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             hCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence            543221     24778999999999999999998887653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.84  E-value=9.2e-20  Score=128.97  Aligned_cols=114  Identities=20%  Similarity=0.316  Sum_probs=94.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc-----cCCCCCCCEEEEEeCCCCCC-CCCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT-----LSDGSPIPCMLLANKCDLPH-RQVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~~~~p~ilv~nK~D~~~-~~~~~   74 (142)
                      ||+|++.|..++..++.++|++|+|||++++.||+.+..|+..+.....     .....++|+|+|+||+|+.. +.+..
T Consensus        54 Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~  133 (247)
T cd04143          54 DTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR  133 (247)
T ss_pred             ECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence            8999999999999999999999999999999999999999888863210     01235799999999999975 56777


Q ss_pred             HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++..++......+++++||+++.|++++|.+|+..+...
T Consensus       134 ~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p  173 (247)
T cd04143         134 DEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP  173 (247)
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence            8877777654335699999999999999999999876433

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.84  E-value=1.1e-19  Score=120.44  Aligned_cols=106  Identities=31%  Similarity=0.522  Sum_probs=94.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|+|++++.++.....|+..+...    ....+|+++++||+|+.. +....+....
T Consensus        56 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~  131 (163)
T cd01860          56 DTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRN----ASPNIIIALVGNKADLESKRQVSTEEAQE  131 (163)
T ss_pred             eCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccCcCCHHHHHH
Confidence            89999999999999999999999999999999999999999988532    236799999999999874 5667778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...+ .+++++||++|.|+.++|.+|++.+
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         132 YADENG-LLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            888888 5699999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.84  E-value=7.4e-20  Score=121.80  Aligned_cols=109  Identities=26%  Similarity=0.283  Sum_probs=91.3

Q ss_pred             CCCcchhh-hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERF-TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~-~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||++++ ...+..+++++|++|+|||++++.||+.+..|+..+....  ....++|+++|+||+|+.. +.+..+...
T Consensus        53 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~v~~~~~~  130 (165)
T cd04146          53 DTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIK--KRDREIPVILVGNKADLLHYRQVSTEEGE  130 (165)
T ss_pred             ECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECCchHHhCccCHHHHH
Confidence            89999963 4567788999999999999999999999999988876322  0135799999999999865 567778888


Q ss_pred             HHHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~  112 (142)
                      .+++.++ .+++++||+++. |++++|..++..+.
T Consensus       131 ~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         131 KLASELG-CLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             HHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            8888888 579999999995 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01861 Rab6 Rab6 subfamily

Probab=99.84  E-value=9.7e-20  Score=120.52  Aligned_cols=105  Identities=36%  Similarity=0.509  Sum_probs=92.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.||..+..|+..+...    ...+.|+++|+||+|+.. +.+..+....
T Consensus        55 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~~~~~~~~~~  130 (161)
T cd01861          55 DTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLVGNKTDLSDKRQVSTEEGEK  130 (161)
T ss_pred             ECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEEChhccccCccCHHHHHH
Confidence            89999999999999999999999999999999999999999988532    223699999999999954 5567777788


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +++..+ .+++++||+++.|++++|.++...
T Consensus       131 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         131 KAKELN-AMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             HHHHhC-CEEEEEeCCCCCCHHHHHHHHHHh
Confidence            888877 569999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04123 Rab21 Rab21 subfamily

Probab=99.83  E-value=1.7e-19  Score=119.10  Aligned_cols=106  Identities=32%  Similarity=0.529  Sum_probs=92.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||++.|..+++.++.++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~nK~D~~~~~~~~~~~~~~  130 (162)
T cd04123          55 DTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR----GNNISLVIVGNKIDLERQRVVSKSEAEE  130 (162)
T ss_pred             ECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECcccccccCCCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    23799999999999875 5566777777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...+ .+++++|++++.|++++|.++...+
T Consensus       131 ~~~~~~-~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         131 YAKSVG-AKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            888777 5599999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.83  E-value=2.8e-19  Score=118.39  Aligned_cols=108  Identities=26%  Similarity=0.453  Sum_probs=94.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++.++++++|+|++++.++.....|+..+.+..   ...++|+++|+||+|+.. +.........
T Consensus        54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~D~~~~~~~~~~~~~~  130 (164)
T cd04139          54 DTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVK---DDDNVPLLLVGNKCDLEDKRQVSSEEAAN  130 (164)
T ss_pred             ECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEccccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999988887432   345799999999999976 4566777777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ++..++ .+++++||+++.|+.++|..+..++.
T Consensus       131 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         131 LARQWG-VPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             HHHHhC-CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            888877 57999999999999999999998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01892 Miro2 Miro2 subfamily

Probab=99.83  E-value=8e-20  Score=122.47  Aligned_cols=106  Identities=18%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++++|++++|||++++.+++.+..|+..+.      ...++|+++|+||+|+.+ +.+.......
T Consensus        60 d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~------~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~  133 (169)
T cd01892          60 EVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYF------MLGEIPCLFVAAKADLDEQQQRYEVQPDE  133 (169)
T ss_pred             ecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhc------cCCCCeEEEEEEcccccccccccccCHHH
Confidence            789999999999999999999999999999999999888987663      124799999999999864 3333344566


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.+++.+++++||+++.|++++|..++..+.
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         134 FCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             HHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            777777545799999999999999999998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.83  E-value=9.7e-20  Score=120.90  Aligned_cols=104  Identities=16%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..|++++|++++|||++++.++.....|+..+..   .......|++|++||+|+... ....++...
T Consensus        50 D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~  125 (159)
T cd04150          50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLN---EDELRDAVLLVFANKQDLPNA-MSAAEVTDK  125 (159)
T ss_pred             ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh---cHHhcCCCEEEEEECCCCCCC-CCHHHHHHH
Confidence            8999999999999999999999999999999999988887776642   112246899999999998642 223332222


Q ss_pred             HH-----HcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ..     ..+ ..++++||++|.|++++|++|..
T Consensus       126 ~~~~~~~~~~-~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         126 LGLHSLRNRN-WYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             hCccccCCCC-EEEEEeeCCCCCCHHHHHHHHhc
Confidence            21     112 24678999999999999999863

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04129 Rho2 Rho2 subfamily

Probab=99.83  E-value=2.1e-19  Score=122.24  Aligned_cols=110  Identities=27%  Similarity=0.370  Sum_probs=94.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|++.|..+.+.++.++|++++|||++++.+|..+. .|+..+....     +++|+++|+||+|+..          
T Consensus        55 Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~  129 (187)
T cd04129          55 DTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLKKDLRQDAVAKEEYRT  129 (187)
T ss_pred             ECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhhhCccccccccc
Confidence            89999999988888899999999999999999999986 6988886433     5799999999999843          


Q ss_pred             -CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 -RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                       +.+..+....+++.++..++++|||++|.|++++|..+.+.++...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         130 QRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR  176 (187)
T ss_pred             CCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence             2345667788889888767999999999999999999998887654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04142 RRP22 RRP22 subfamily

Probab=99.82  E-value=2.3e-19  Score=123.15  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=88.7

Q ss_pred             CCCcchhhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||++.|..        ....+++++|++|+|||++++.||+.+..|+..+..... ....++|+++|+||+|+.. +.
T Consensus        55 Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~~~  133 (198)
T cd04142          55 DVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRHRF  133 (198)
T ss_pred             eCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECcccccccc
Confidence            7888765432        233457899999999999999999999999888764320 1236799999999999966 55


Q ss_pred             CCHHHHHHHHH-HcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         72 VDINDIECFYK-EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        72 ~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +..+.+..++. .++ .+|++|||++|.|++++|..++..++.+.
T Consensus       134 ~~~~~~~~~~~~~~~-~~~~e~Sak~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         134 APRHVLSVLVRKSWK-CGYLECSAKYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             ccHHHHHHHHHHhcC-CcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            66666776665 445 67999999999999999999999888664

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.82  E-value=3.3e-19  Score=120.90  Aligned_cols=111  Identities=15%  Similarity=0.281  Sum_probs=88.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..+|+.+++++|++++|+|++++.++.....|+..+....   ...++|+++|+||+|+.. ....+.+..+
T Consensus        58 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~NK~D~~~-~~~~~~~~~~  133 (183)
T cd04152          58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFS---ENQGVPVLVLANKQDLPN-ALSVSEVEKL  133 (183)
T ss_pred             ECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh---hcCCCcEEEEEECcCccc-cCCHHHHHHH
Confidence            899999999999999999999999999999999998888887775322   335799999999999864 3344555544


Q ss_pred             HHH--c---CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKE--H---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~--~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ...  .   ...+++++||+++.|++++|.+|+..+.+..
T Consensus       134 ~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~  173 (183)
T cd04152         134 LALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRR  173 (183)
T ss_pred             hCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence            321  1   1135789999999999999999999987543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.82  E-value=3.1e-19  Score=119.71  Aligned_cols=106  Identities=24%  Similarity=0.390  Sum_probs=89.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------   70 (142)
                      ||||+++|..++..++.++|++++|||++++.||+.+. .|+..+....     .++|+++|+||+|+...         
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~i~~  129 (175)
T cd01870          55 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAK  129 (175)
T ss_pred             eCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhcccChhhhhhhhh
Confidence            89999999999999999999999999999999998875 5888775332     57999999999998531         


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                          .+.......++...+..++++|||++|.|++++|.++++.+
T Consensus       130 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         130 MKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence                23456677778887766799999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.82  E-value=2.8e-19  Score=120.45  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=82.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..|++++|++|+|||++++.++.....|+..+..   .....++|++||+||+|+.. ....+++...
T Consensus        63 D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~  138 (175)
T smart00177       63 DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLN---EDELRDAVILVFANKQDLPD-AMKAAEITEK  138 (175)
T ss_pred             ECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhh---CHhhcCCcEEEEEeCcCccc-CCCHHHHHHH
Confidence            8999999999999999999999999999999999998888877642   22235789999999999864 2233333332


Q ss_pred             HHHc----CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ....    ....++++||++|.|+.++|.+|...+
T Consensus       139 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      139 LGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             hCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            2111    112366899999999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04148 RGK RGK subfamily

Probab=99.82  E-value=4.5e-19  Score=123.64  Aligned_cols=109  Identities=17%  Similarity=0.264  Sum_probs=91.1

Q ss_pred             CCCcchhhhhhhHhhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYK-DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~-~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||++.  .+...++. ++|++++|||++++.||..+..|+..+....   ...++|+|+|+||+|+.. +.+..++..
T Consensus        56 Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~  130 (221)
T cd04148          56 DHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR---QLEDRPIILVGNKSDLARSREVSVQEGR  130 (221)
T ss_pred             eCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhccccceecHHHHH
Confidence            8999993  34556667 9999999999999999999999998886322   335799999999999865 566777777


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .++..++ .+++++||+++.|++++|.+++..+....
T Consensus       131 ~~a~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~~~~~  166 (221)
T cd04148         131 ACAVVFD-CKFIETSAGLQHNVDELLEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence            8888887 46999999999999999999999997544

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.82  E-value=5e-19  Score=120.00  Aligned_cols=110  Identities=15%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..|++++|++|+|||++++.++.....|+..+.   ......++|++||+||.|+.. .....++...
T Consensus        67 D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~---~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~  142 (182)
T PTZ00133         67 DVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERML---SEDELRDAVLLVFANKQDLPN-AMSTTEVTEK  142 (182)
T ss_pred             ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHH---hCHhhcCCCEEEEEeCCCCCC-CCCHHHHHHH
Confidence            899999999999999999999999999999999998887776664   211224689999999999854 2233333222


Q ss_pred             HHHcC----CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHN----FIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~----~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .....    ...++++||++|.|+.++|++|.+.+.+.
T Consensus       143 l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        143 LGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             hCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            11111    12466899999999999999999877654

>cd04114 Rab30 Rab30 subfamily

Probab=99.81  E-value=6.6e-19  Score=117.45  Aligned_cols=106  Identities=31%  Similarity=0.471  Sum_probs=90.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||++.|..++..++..+|++++|||++++.++..+..|+..+...    ...++|+++|+||+|+.. +.+..+....
T Consensus        62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~~i~v~NK~D~~~~~~i~~~~~~~  137 (169)
T cd04114          62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY----ANNKVITILVGNKIDLAERREVSQQRAEE  137 (169)
T ss_pred             ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999887532    234799999999999875 5566666666


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +..... .+++++||++|.|+.++|..|...+
T Consensus       138 ~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         138 FSDAQD-MYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             HHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            766666 5699999999999999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04154 Arl2 Arl2 subfamily

Probab=99.81  E-value=5.5e-19  Score=118.60  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.|..++..+++++|++++|||++++.++.....|+..+..   .....++|+++|+||+|+.. ....+.+..+
T Consensus        64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~  139 (173)
T cd04154          64 DVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQ---EERLAGATLLILANKQDLPG-ALSEEEIREA  139 (173)
T ss_pred             ECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEECccccc-CCCHHHHHHH
Confidence            8999999999999999999999999999999999988888877652   11235799999999999865 2344555555


Q ss_pred             HHHc----CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +...    ...+++++||++|.|++++|.+++.
T Consensus       140 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         140 LELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             hCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            4321    2256999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.81  E-value=9.2e-20  Score=121.61  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH----
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND----   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~----   76 (142)
                      ||||+++|..++..+++++|++++|||++++.++.....|+..+...     .+++|+++|+||+|+... .....    
T Consensus        50 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-----~~~~piilv~NK~Dl~~~-~~~~~i~~~  123 (164)
T cd04162          50 EIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-----PPDLPLVVLANKQDLPAA-RSVQEIHKE  123 (164)
T ss_pred             ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC-----CCCCcEEEEEeCcCCcCC-CCHHHHHHH
Confidence            89999999999999999999999999999999999888888877522     268999999999998652 12222    


Q ss_pred             --HHHHHHHcCCceEEEeeccC------CCCHHHHHHHHHH
Q psy10891         77 --IECFYKEHNFIGWTETSTKE------GLMVNDSMKFLLD  109 (142)
Q Consensus        77 --~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~l~~  109 (142)
                        +..+++..+ .+++++||++      ++|++++|+.++.
T Consensus       124 ~~~~~~~~~~~-~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         124 LELEPIARGRR-WILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             hCChhhcCCCc-eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence              234445555 4588888888      9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.81  E-value=2.7e-18  Score=115.75  Aligned_cols=112  Identities=22%  Similarity=0.381  Sum_probs=95.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++..++++++|||+++..+++.+..|+..+.+.   ....+.|+|+|+||+|+.. +.+.......
T Consensus        55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~  131 (180)
T cd04137          55 DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM---LGKESVPIVLVGNKSDLHTQRQVSTEEGKE  131 (180)
T ss_pred             ECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence            89999999999999999999999999999999999999998877632   2345789999999999865 4455666777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .+++++||+++.|+.++|.++...+.....
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  167 (180)
T cd04137         132 LAESWG-AAFLESSARENENVEEAFELLIEEIEKVEN  167 (180)
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            777777 569999999999999999999999876643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.81  E-value=1.1e-18  Score=119.61  Aligned_cols=108  Identities=22%  Similarity=0.318  Sum_probs=88.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~   78 (142)
                      ||||+++|..++..++.++|++++|||++++.+++.+..|+..+....   ...++|+|+|+||+|+..  +.+......
T Consensus        53 D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~~v~~~~~~  129 (198)
T cd04147          53 DTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVK---EDKFVPIVVVGNKADSLEEERQVPAKDAL  129 (198)
T ss_pred             ECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEccccccccccccHHHHH
Confidence            899999999999999999999999999999999999999988886433   335799999999999864  334444444


Q ss_pred             HHHH-HcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         79 CFYK-EHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .... .++ .+++++||++|.|++++|++++..+.
T Consensus       130 ~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         130 STVELDWN-CGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             HHHHhhcC-CcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            3333 334 46899999999999999999998775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG4252|consensus

Probab=99.80  E-value=3.3e-19  Score=117.71  Aligned_cols=111  Identities=32%  Similarity=0.508  Sum_probs=101.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||.|..++..||++|.+.++||+.+|..||+.+..|++.+...+     ..+|.++|-||+|+.+ ..+...+.+.
T Consensus        75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-----~~IPtV~vqNKIDlveds~~~~~evE~  149 (246)
T KOG4252|consen   75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-----ERIPTVFVQNKIDLVEDSQMDKGEVEG  149 (246)
T ss_pred             HhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh-----ccCCeEEeeccchhhHhhhcchHHHHH
Confidence            799999999999999999999999999999999999999999997655     7999999999999988 6778888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      +++... ..++.+|++...|+..+|..|+..+.+...+
T Consensus       150 lak~l~-~RlyRtSvked~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  150 LAKKLH-KRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHhh-hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999887 4599999999999999999999988876544

>cd01893 Miro1 Miro1 subfamily

Probab=99.80  E-value=1.3e-18  Score=116.09  Aligned_cols=108  Identities=14%  Similarity=0.170  Sum_probs=86.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~   76 (142)
                      ||||++.+...+..++.++|++++|||++++.|++.+. .|+..+....     .++|+++|+||+|+.+...   ..+.
T Consensus        53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~pviiv~nK~Dl~~~~~~~~~~~~  127 (166)
T cd01893          53 DTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-----VKVPIILVGNKSDLRDGSSQAGLEEE  127 (166)
T ss_pred             eCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhcccccchhHHHHH
Confidence            89999999888888899999999999999999999875 6888775332     4799999999999976222   1233


Q ss_pred             HHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         77 IECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        77 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +..++..+. ..++++|||+++.|++++|..+...++.
T Consensus       128 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         128 MLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            444444443 2369999999999999999999887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.79  E-value=3.1e-18  Score=113.33  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=80.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|+|++++.++.....|+..+.... .....++|+++|+||+|+... .....+...
T Consensus        51 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~-~~~~~~~~~  128 (162)
T cd04157          51 DMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHP-DIKHRRVPILFFANKMDLPDA-LTAVKITQL  128 (162)
T ss_pred             ECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCc-ccccCCCCEEEEEeCccccCC-CCHHHHHHH
Confidence            899999999999999999999999999999999988888887775211 001257999999999998642 222333222


Q ss_pred             HHH---c-CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKE---H-NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~---~-~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ...   . ...+++++||++|.|++++|.+|..
T Consensus       129 l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         129 LGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             hCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            211   1 1124889999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00876 Ras Ras family

Probab=99.78  E-value=4.9e-18  Score=111.89  Aligned_cols=106  Identities=30%  Similarity=0.547  Sum_probs=93.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||++.|..++..+++++|++++|||++++.++..+..|+..+....   ....+|+++|+||+|+.. ..+..+.+..
T Consensus        53 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  129 (160)
T cd00876          53 DTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVK---DDEDIPIVLVGNKCDLENERQVSKEEGKA  129 (160)
T ss_pred             ECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCcccccceecHHHHHH
Confidence            899999999999999999999999999999999999999988886433   335799999999999976 5667788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ++..++ .+++++|++++.|++++|.+|...
T Consensus       130 ~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         130 LAKEWG-CPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             HHHHcC-CcEEEeccCCCCCHHHHHHHHHhh
Confidence            888877 679999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.78  E-value=3.7e-18  Score=113.59  Aligned_cols=105  Identities=24%  Similarity=0.362  Sum_probs=84.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.|..++..+++++|++++|+|++++.++.....|+..+.+   .....++|+++|+||+|+.. ....+.+..+
T Consensus        56 Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~NK~D~~~-~~~~~~~~~~  131 (167)
T cd04160          56 DLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLR---NEALEGVPLLILANKQDLPD-ALSVEEIKEV  131 (167)
T ss_pred             ECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEEcccccc-CCCHHHHHHH
Confidence            8999999999999999999999999999999888888888877752   22335799999999999865 3344455554


Q ss_pred             HHHc------CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEH------NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ....      ...+++++||++|.|+++++.+|..
T Consensus       132 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         132 FQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             hccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            4332      1246999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.78  E-value=5.4e-18  Score=115.27  Aligned_cols=106  Identities=16%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++++..+|..+++++|++++|+|+++..++.....|+..+.   +.....+.|+++++||+|+.. .+..+++..+
T Consensus        69 D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~---~~~~~~~~pvivv~NK~Dl~~-~~~~~~~~~~  144 (190)
T cd00879          69 DLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLL---SDEELANVPFLILGNKIDLPG-AVSEEELRQA  144 (190)
T ss_pred             ECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHH---cCccccCCCEEEEEeCCCCCC-CcCHHHHHHH
Confidence            899999999999999999999999999999999988788887775   222345799999999999864 4566677666


Q ss_pred             HHHcC---------------CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEHN---------------FIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +....               ..++++|||+++.|+.++|.+|.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         145 LGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             hCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            64321               1358999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.78  E-value=3.2e-18  Score=115.12  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=81.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|+|++++.++.....|+..+..   .....++|+++++||+|+.. ....+++...
T Consensus        65 D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~---~~~~~~~p~viv~NK~Dl~~-~~~~~~i~~~  140 (174)
T cd04153          65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA---HEDLRKAVLLVLANKQDLKG-AMTPAEISES  140 (174)
T ss_pred             ECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCCEEEEEECCCCCC-CCCHHHHHHH
Confidence            8999999999999999999999999999999999887777766642   22235799999999999864 2333333222


Q ss_pred             H-----HHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      .     ...+ .++++|||++|.|++++|++|.+
T Consensus       141 l~~~~~~~~~-~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         141 LGLTSIRDHT-WHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             hCcccccCCc-eEEEecccCCCCCHHHHHHHHhc
Confidence            2     1222 35899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00154 Rab Rab family

Probab=99.77  E-value=9.8e-18  Score=109.84  Aligned_cols=103  Identities=41%  Similarity=0.629  Sum_probs=90.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC-CCCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP-HRQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~   79 (142)
                      ||||++.|..++..+++++|++++|+|++++.++..+..|+..+...    .....|+++++||+|+. ......+.+..
T Consensus        55 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  130 (159)
T cd00154          55 DTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEY----APENIPIILVGNKIDLEDQRQVSTEEAQQ  130 (159)
T ss_pred             ecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEcccccccccccHHHHHH
Confidence            89999999999999999999999999999999999999999888532    22579999999999996 35567788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ++...+ .+++++|++++.|+.++|.+|.
T Consensus       131 ~~~~~~-~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         131 FAKENG-LLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HHHHcC-CeEEEEecCCCCCHHHHHHHHh
Confidence            888876 5699999999999999999885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.77  E-value=5.2e-18  Score=112.16  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=81.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++++..++..++.++|++++|+|++++.++.....|+..+.+   .....++|+++|+||+|+.. ......+...
T Consensus        50 D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~  125 (160)
T cd04156          50 DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILK---NEHIKGVPVVLLANKQDLPG-ALTAEEITRR  125 (160)
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHh---chhhcCCCEEEEEECccccc-CcCHHHHHHH
Confidence            8999999999999999999999999999999999988888877752   22235799999999999854 2223333322


Q ss_pred             HH--Hc---CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YK--EH---NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~--~~---~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ..  .+   ...++++|||++|.|++++|.+|.+
T Consensus       126 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         126 FKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            11  11   1135889999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.77  E-value=9.5e-18  Score=110.94  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=78.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++.++|++++|+|++++.++.....|+..+.   +.....+.|+++|+||+|+... .....+...
T Consensus        49 Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~piiiv~nK~Dl~~~-~~~~~i~~~  124 (158)
T cd04151          49 DLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAML---EEEELKGAVLLVFANKQDMPGA-LSEAEISEK  124 (158)
T ss_pred             ECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH---hchhhcCCcEEEEEeCCCCCCC-CCHHHHHHH
Confidence            899999999999999999999999999999988876666655443   1112257899999999998642 222222221


Q ss_pred             HHHc----CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ....    ...+++++||+++.|++++|++|++
T Consensus       125 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         125 LGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             hCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            1110    0135999999999999999999874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.77  E-value=7.7e-18  Score=112.62  Aligned_cols=105  Identities=21%  Similarity=0.270  Sum_probs=82.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC-   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-   79 (142)
                      ||||++++..+|..|++++|++++|||++++.++..+..|+..+.+   .....++|+++|+||+|+... ....++.. 
T Consensus        49 D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~  124 (167)
T cd04161          49 DLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANKQDKKNA-LLGADVIEY  124 (167)
T ss_pred             ECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeCCCCcCC-CCHHHHHHh
Confidence            8999999999999999999999999999999999999999888862   223357999999999998652 22222222 


Q ss_pred             -----HHHHcCC-ceEEEeeccCC------CCHHHHHHHHHH
Q psy10891         80 -----FYKEHNF-IGWTETSTKEG------LMVNDSMKFLLD  109 (142)
Q Consensus        80 -----~~~~~~~-~~~~~~Sa~~~------~~i~~l~~~l~~  109 (142)
                           +++..+. .++++|||++|      .|+.+.|.||..
T Consensus       125 ~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         125 LSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             cCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence                 2222222 34777999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00157 Rho Rho (Ras homology) family

Probab=99.77  E-value=8.7e-18  Score=112.07  Aligned_cols=104  Identities=25%  Similarity=0.415  Sum_probs=87.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      ||||+++|..++..+++.+|++++|||++++.++.... .|+..+....     .++|+++|+||+|+.. .        
T Consensus        54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~  128 (171)
T cd00157          54 DTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-----PNVPIILVGTKIDLRDDENTLKKLEK  128 (171)
T ss_pred             eCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEccHHhhhchhhhhhccc
Confidence            89999999999999999999999999999999988754 5777775433     4799999999999865 2        


Q ss_pred             ---CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         71 ---QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        71 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                         .+..+....++..++..+++++||+++.|+.++|..|+.
T Consensus       129 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         129 GKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             CCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence               134667777888888658999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01890 LepA LepA subfamily

Probab=99.76  E-value=1.1e-17  Score=112.62  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++|+|||+++..++.....|.....        .++|+++|+||+|+... ........+
T Consensus        73 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~-~~~~~~~~~  143 (179)
T cd01890          73 DTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--------NNLEIIPVINKIDLPSA-DPERVKQQI  143 (179)
T ss_pred             ECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--------cCCCEEEEEECCCCCcC-CHHHHHHHH
Confidence            899999999999999999999999999998777776666654332        46899999999998541 122233455


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++.++..  +++++||++|.|++++|.+|...+
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            6666642  389999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.76  E-value=2.4e-17  Score=108.81  Aligned_cols=105  Identities=17%  Similarity=0.288  Sum_probs=84.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++.++|++++|||++++.++.....|+..+...   ....+.|+++|+||+|+... ...++....
T Consensus        49 D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~D~~~~-~~~~~~~~~  124 (158)
T cd00878          49 DVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNE---EELKGVPLLIFANKQDLPGA-LSVSELIEK  124 (158)
T ss_pred             ECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEeeccCCccc-cCHHHHHHh
Confidence            89999999999999999999999999999999999988888777532   23468999999999998652 233344433


Q ss_pred             HHHc----CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ....    ...+++++||++|.|++++|.+|..
T Consensus       125 ~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         125 LGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             hChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            3221    2246999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.75  E-value=1.8e-17  Score=112.45  Aligned_cols=106  Identities=13%  Similarity=0.207  Sum_probs=84.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++++..++..|+.++|++++|+|++++.++.....|+..+..   .....++|+++|+||+|+.. .+..+++...
T Consensus        67 D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~  142 (184)
T smart00178       67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNKIDAPY-AASEDELRYA  142 (184)
T ss_pred             ECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeCccccC-CCCHHHHHHH
Confidence            8999999999999999999999999999999999888888776642   11235789999999999853 3455555544


Q ss_pred             HHHc-----------CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEH-----------NFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ....           ....+++|||+++.|+++++++|...
T Consensus       143 l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      143 LGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            3211           22348899999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.75  E-value=7.5e-17  Score=111.87  Aligned_cols=107  Identities=31%  Similarity=0.541  Sum_probs=91.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|+++|..++..++.+++++++|||+++..||..+..|+..+....     .++|+++|+||+|+..+.+..+. ..+
T Consensus        64 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~~~~~~~-~~~  137 (215)
T PTZ00132         64 DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDRQVKARQ-ITF  137 (215)
T ss_pred             ECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccccCCHHH-HHH
Confidence            799999999999999999999999999999999999999998886443     57999999999998654343443 346


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +...+ ..++++||+++.|+.++|.+|++.+...
T Consensus       138 ~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        138 HRKKN-LQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            66666 4699999999999999999999988764

>KOG4423|consensus

Probab=99.74  E-value=8.5e-18  Score=111.55  Aligned_cols=135  Identities=39%  Similarity=0.679  Sum_probs=111.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~   78 (142)
                      |.+||++|..|+..||+.+++.++|||++...+|+....|..++....+......+|+|+.+||||...  .......+.
T Consensus        81 dIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d  160 (229)
T KOG4423|consen   81 DIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFD  160 (229)
T ss_pred             cchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHH
Confidence            789999999999999999999999999999999999999999987665555567789999999999876  222346778


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccCCC
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPA  135 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (142)
                      .++++.|+...+++|++.+.++.+.-..++++++-+..+.........+.+++..-+
T Consensus       161 ~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~  217 (229)
T KOG4423|consen  161 NFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQ  217 (229)
T ss_pred             HHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCCcccccccccccCccccC
Confidence            889999999999999999999999999999999987654444444455555554433

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.74  E-value=2.3e-17  Score=107.20  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=75.4

Q ss_pred             CCCcc-----hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH
Q psy10891          1 MTEGQ-----ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN   75 (142)
Q Consensus         1 Dt~G~-----e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~   75 (142)
                      ||||+     +.|..+.. .++++|++++|||++++.++.. ..|....          ..|+++|+||+|+.++....+
T Consensus        41 Dt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~~~~~~~  108 (142)
T TIGR02528        41 DTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAEADVDIE  108 (142)
T ss_pred             cCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCCcccCHH
Confidence            89998     44555555 5899999999999999988765 3454322          249999999999865445566


Q ss_pred             HHHHHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         76 DIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        76 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ....+++..+..+++++||+++.|++++|.++.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            677778777765799999999999999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.71  E-value=1.7e-16  Score=109.25  Aligned_cols=97  Identities=24%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc---------------CCCCCCCEEEEEeCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL---------------SDGSPIPCMLLANKC   65 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~p~ilv~nK~   65 (142)
                      ||+|+++|..++..||+++|++|+|||++++.||+.+..|+.++......               ....++|+||||||+
T Consensus        60 DtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~  139 (202)
T cd04102          60 DVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKL  139 (202)
T ss_pred             ecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECc
Confidence            89999999999999999999999999999999999999999998642100               012479999999999


Q ss_pred             CCCC-CCCCHH----HHHHHHHHcCCceEEEeeccCCC
Q psy10891         66 DLPH-RQVDIN----DIECFYKEHNFIGWTETSTKEGL   98 (142)
Q Consensus        66 D~~~-~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~   98 (142)
                      |+.+ +.+...    ....++...+ .+.++.++.++.
T Consensus       140 Dl~~~r~~~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~  176 (202)
T cd04102         140 DQIPEKESSGNLVLTARGFVAEQGN-AEEINLNCTNGR  176 (202)
T ss_pred             cchhhcccchHHHhhHhhhHHHhcC-CceEEEecCCcc
Confidence            9865 333332    2334677788 568888888764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.69  E-value=3.5e-16  Score=105.45  Aligned_cols=107  Identities=23%  Similarity=0.372  Sum_probs=85.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |.+|+..++.+|+.|+.++|++|||+|.++...+......+..+.   ......++|+++++||+|+.. ....+++...
T Consensus        64 d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll---~~~~~~~~piLIl~NK~D~~~-~~~~~~i~~~  139 (175)
T PF00025_consen   64 DLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELL---NDPELKDIPILILANKQDLPD-AMSEEEIKEY  139 (175)
T ss_dssp             EESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHH---TSGGGTTSEEEEEEESTTSTT-SSTHHHHHHH
T ss_pred             eccccccccccceeeccccceeEEEEecccceeecccccchhhhc---chhhcccceEEEEeccccccC-cchhhHHHhh
Confidence            679999999999999999999999999999888888777776665   222335899999999999864 4556666554


Q ss_pred             HHHcC-----CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEHN-----FIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~~-----~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .....     -..++.|||.+|+|+.+.|+||.+++
T Consensus       140 l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  140 LGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            43221     13478899999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.68  E-value=1e-15  Score=100.34  Aligned_cols=105  Identities=19%  Similarity=0.267  Sum_probs=79.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++.++|++++|+|++++.++.....|+..+.   ......++|+++|+||+|+.... ........
T Consensus        50 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~  125 (159)
T cd04159          50 DLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLL---EKPSLEGIPLLVLGNKNDLPGAL-SVDELIEQ  125 (159)
T ss_pred             ECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH---cChhhcCCCEEEEEeCccccCCc-CHHHHHHH
Confidence            899999999999999999999999999999988888777777664   22223578999999999986521 22222111


Q ss_pred             HH--H--cCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YK--E--HNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~--~--~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ..  .  ....+++++|++++.|+++++.+|.+
T Consensus       126 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         126 MNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             hCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            11  1  11145899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN00023 GTP-binding protein; Provisional

Probab=99.67  E-value=1.8e-15  Score=109.75  Aligned_cols=88  Identities=20%  Similarity=0.480  Sum_probs=73.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc--------CCCCCCCEEEEEeCCCCCCC--
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL--------SDGSPIPCMLLANKCDLPHR--   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D~~~~--   70 (142)
                      ||+||++|..+++.||++++++|+|||+++..||+.+..|+..+......        ....++|++||+||+|+..+  
T Consensus        89 DTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~  168 (334)
T PLN00023         89 DVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG  168 (334)
T ss_pred             ECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc
Confidence            89999999999999999999999999999999999999999999744210        00135899999999998652  


Q ss_pred             --C---CCHHHHHHHHHHcCCce
Q psy10891         71 --Q---VDINDIECFYKEHNFIG   88 (142)
Q Consensus        71 --~---~~~~~~~~~~~~~~~~~   88 (142)
                        .   +..+.+..|++..++.+
T Consensus       169 ~r~~s~~~~e~a~~~A~~~g~l~  191 (334)
T PLN00023        169 TRGSSGNLVDAARQWVEKQGLLP  191 (334)
T ss_pred             ccccccccHHHHHHHHHHcCCCc
Confidence              1   35788999999998754

>cd01898 Obg Obg subfamily

Probab=99.66  E-value=1.4e-15  Score=101.39  Aligned_cols=108  Identities=13%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             CCCcch----hhhhhhHhhh---ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQE----RFTWMTRVYY---KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e----~~~~~~~~~~---~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||+.    .+..++..++   ..+|++++|+|++++ .+++.+..|...+....  ....++|+++|+||+|+.....
T Consensus        54 DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~~  131 (170)
T cd01898          54 DIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYN--PELLEKPRIVVLNKIDLLDEEE  131 (170)
T ss_pred             ecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhC--ccccccccEEEEEchhcCCchh
Confidence            899963    3333444444   459999999999998 78888889988876432  1124689999999999866333


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ..+....+.......+++++||+++.|++++|.++.++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         132 LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            34445555555322569999999999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.66  E-value=1.5e-15  Score=101.63  Aligned_cols=102  Identities=17%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++++...+..+++++|++++|+|+++..++.....|+..+..   .....++|+++++||+|+.. ......   +
T Consensus        64 D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~D~~~-~~~~~~---i  136 (173)
T cd04155          64 DIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLE---EEKLAGVPVLVFANKQDLAT-AAPAEE---I  136 (173)
T ss_pred             ECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEECCCCcc-CCCHHH---H
Confidence            8999999999999999999999999999998888887777766542   22235799999999999854 222222   3


Q ss_pred             HHHcCC-------ceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEHNF-------IGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~~~-------~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ....+.       .+++++||++|.|++++|++|++
T Consensus       137 ~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         137 AEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             HHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            333332       13679999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.64  E-value=2.6e-15  Score=99.68  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             CCCcc-----hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH
Q psy10891          1 MTEGQ-----ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN   75 (142)
Q Consensus         1 Dt~G~-----e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~   75 (142)
                      ||||+     +.+..+. ..+.++|++++|+|+++..++..  .|+..+.        .+.|+++++||+|+..  ...+
T Consensus        43 DtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~--------~~~~ii~v~nK~Dl~~--~~~~  109 (158)
T PRK15467         43 DTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDIG--------VSKRQIAVISKTDMPD--ADVA  109 (158)
T ss_pred             cCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhcc--------CCCCeEEEEEccccCc--ccHH
Confidence            89997     4333333 34789999999999998876633  4544431        3679999999999854  3456


Q ss_pred             HHHHHHHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        76 ~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .+..++...++ .|++++||+++.|++++|..+.+.+.+.
T Consensus       110 ~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        110 ATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             HHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            66777777775 4799999999999999999998887654

>cd04171 SelB SelB subfamily

Probab=99.64  E-value=3.3e-15  Score=98.75  Aligned_cols=99  Identities=10%  Similarity=0.035  Sum_probs=69.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~   74 (142)
                      ||||+++|......+++++|++++|+|+++   +.+...+. ++...         ...|+++|+||+|+....   ...
T Consensus        57 DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~-~~~~~---------~~~~~ilv~NK~Dl~~~~~~~~~~  126 (164)
T cd04171          57 DVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE-ILELL---------GIKRGLVVLTKADLVDEDWLELVE  126 (164)
T ss_pred             ECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH-HHHHh---------CCCcEEEEEECccccCHHHHHHHH
Confidence            899999998888888999999999999987   33333222 11111         124999999999986421   112


Q ss_pred             HHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         75 NDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        75 ~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ..+..++...  ...+++++||+++.|+++++..+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            3333344432  2256999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG3883|consensus

Probab=99.64  E-value=5.6e-15  Score=95.41  Aligned_cols=119  Identities=22%  Similarity=0.349  Sum_probs=100.6

Q ss_pred             CCCcchhh-hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERF-TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~-~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||+|...+ ..+-..|+.-+|++++||+..+++||+.++-+...|.+   ..+...+|+++.+||+|+.+ +.+..+...
T Consensus        66 DTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~  142 (198)
T KOG3883|consen   66 DTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEPREVDMDVAQ  142 (198)
T ss_pred             ecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccchhcCHHHHH
Confidence            78997777 55678899999999999999999999998877777763   33667899999999999977 788999999


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN  123 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~  123 (142)
                      .||+.... ..+++++.+...+-+.|..+...+........+|..
T Consensus       143 ~Wa~rEkv-kl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl~  186 (198)
T KOG3883|consen  143 IWAKREKV-KLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPLS  186 (198)
T ss_pred             HHHhhhhe-eEEEEEeccchhhhhHHHHHHHhccCCcccccCcch
Confidence            99999884 499999999999999999999888776655555544

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.63  E-value=6.4e-15  Score=108.31  Aligned_cols=112  Identities=11%  Similarity=0.045  Sum_probs=82.0

Q ss_pred             CCCcchh----hhhhh---HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC
Q psy10891          1 MTEGQER----FTWMT---RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV   72 (142)
Q Consensus         1 Dt~G~e~----~~~~~---~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~   72 (142)
                      ||||.-.    ...+.   -.+++.++++++|+|+++..+++.+..|..++..+.  ....++|+++|+||+|+.. ..+
T Consensus       212 D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~--~~L~~kp~IIV~NKiDL~~~~~~  289 (335)
T PRK12299        212 DIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS--PELADKPRILVLNKIDLLDEEEE  289 (335)
T ss_pred             eCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh--hhcccCCeEEEEECcccCCchhH
Confidence            7898632    11233   334567999999999998878999999998886432  1124689999999999865 223


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .......++...+ .+++++||+++.|+++++.+|...+.+..
T Consensus       290 ~~~~~~~~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        290 REKRAALELAALG-GPVFLISAVTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence            3334444555555 46999999999999999999999886643

>KOG0073|consensus

Probab=99.62  E-value=6.4e-15  Score=95.99  Aligned_cols=109  Identities=21%  Similarity=0.309  Sum_probs=87.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH----
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND----   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~----   76 (142)
                      |.+||..++..|+.||..+|++|||+|+.|+..++.....+..+.   ......+.|+++++||.|+.. .+..+.    
T Consensus        66 DvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL---~eerlaG~~~Lvlank~dl~~-~l~~~~i~~~  141 (185)
T KOG0073|consen   66 DVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELL---VEERLAGAPLLVLANKQDLPG-ALSLEEISKA  141 (185)
T ss_pred             EcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHH---hhhhhcCCceEEEEecCcCcc-ccCHHHHHHh
Confidence            789999999999999999999999999999988888776655554   333446799999999999974 233333    


Q ss_pred             --HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         77 --IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        77 --~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                        +..+++.+. .+.+-||+.+|+++.+-++|++..++++
T Consensus       142 ~~L~~l~ks~~-~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  142 LDLEELAKSHH-WRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             hCHHHhccccC-ceEEEEeccccccHHHHHHHHHHHHHHH
Confidence              333445555 4589999999999999999999999875

>KOG0070|consensus

Probab=99.62  E-value=1.1e-14  Score=96.67  Aligned_cols=109  Identities=18%  Similarity=0.283  Sum_probs=87.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |.+||++++.+|+.|+.+.+++|||+|.+|..-+...+.-+..+.   ......++|+++.+||.|+.. ..+..++...
T Consensus        67 DvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~-als~~ei~~~  142 (181)
T KOG0070|consen   67 DVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPG-ALSAAEITNK  142 (181)
T ss_pred             ecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhccc-cCCHHHHHhH
Confidence            789999999999999999999999999999988887776665555   333456899999999999875 4455555555


Q ss_pred             HHHcCCc----eEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFI----GWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .....+.    .+..|||.+|+|+.+.++++...+..
T Consensus       143 L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  143 LGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             hhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            4443321    25679999999999999999988754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.61  E-value=6e-15  Score=115.57  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|...+..+++.+|++|+|+|+++..+......|...+.        .++|+++|+||+|+... ........+
T Consensus        76 DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~-~~~~~~~el  146 (595)
T TIGR01393        76 DTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSA-DPERVKKEI  146 (595)
T ss_pred             ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCcc-CHHHHHHHH
Confidence            899999999999999999999999999999777777667765542        46899999999998541 122333455


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ...++..  .++++||++|.|+.++|+.|...+..
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            5555542  48999999999999999999887743

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0075|consensus

Probab=99.61  E-value=1.9e-15  Score=96.97  Aligned_cols=105  Identities=19%  Similarity=0.270  Sum_probs=80.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |.+||.+|+++|+.|+++.+++++|+|+.++..+...+.-+..+.   ..+.-.++|+++.|||.|+.. ......+.  
T Consensus        71 D~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL---~k~~l~gip~LVLGnK~d~~~-AL~~~~li--  144 (186)
T KOG0075|consen   71 DLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLL---DKPSLTGIPLLVLGNKIDLPG-ALSKIALI--  144 (186)
T ss_pred             ecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHh---cchhhcCCcEEEecccccCcc-cccHHHHH--
Confidence            789999999999999999999999999999887776665555544   222346899999999999875 22333322  


Q ss_pred             HHHcCC-------ceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         81 YKEHNF-------IGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        81 ~~~~~~-------~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                       ...|.       .-.|.+|++...+++.+++||+++.-
T Consensus       145 -~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  145 -ERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             -HHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence             22332       12678999999999999999998764

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.61  E-value=1.1e-14  Score=95.78  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=73.8

Q ss_pred             CCCcchhhhh------hhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTW------MTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~------~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||++.+..      ++..++.  ++|++++|+|++++.+..   .|...+..       .++|+++|+||+|+.....
T Consensus        49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~  118 (158)
T cd01879          49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE-------LGLPVVVALNMIDEAEKRG  118 (158)
T ss_pred             ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH-------cCCCEEEEEehhhhccccc
Confidence            8999988775      3566665  999999999998865432   34444421       3689999999999965222


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .......+...++ .+++++||.++.|+.+++.++...+
T Consensus       119 ~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         119 IKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             chhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHHHHh
Confidence            2223455666667 4699999999999999999987753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.60  E-value=9.1e-15  Score=97.31  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=63.6

Q ss_pred             cCCEEEEEEeCCChhhH--HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891         18 DAHGCIIMFDLTNQNSF--KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK   95 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   95 (142)
                      .+|++++|+|+++..++  .....|+..+....     .+.|+++|+||+|+..... ......+....+ .++++|||+
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~Sa~  151 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFED-LSEIEEEEELEG-EEVLKISTL  151 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchhh-HHHHHHhhhhcc-CceEEEEec
Confidence            46899999999987543  55557877775322     4789999999999865211 111334444433 569999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy10891         96 EGLMVNDSMKFLLDVL  111 (142)
Q Consensus        96 ~~~~i~~l~~~l~~~~  111 (142)
                      ++.|++++|.++...+
T Consensus       152 ~~~gi~~l~~~l~~~~  167 (168)
T cd01897         152 TEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCCHHHHHHHHHHHh
Confidence            9999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.60  E-value=5.1e-15  Score=104.71  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             chhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHH
Q psy10891          5 QERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYK   82 (142)
Q Consensus         5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~   82 (142)
                      .++|+.+.+.+++++|++++|||++++. |+..+..|+..+..       .++|+++|+||+|+.+ +.+..+....+ .
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~   94 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDDEDMEKEQLDIY-R   94 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCCHHHHHHHHHHH-H
Confidence            4889999999999999999999999887 89999999877631       5799999999999965 32223344433 4


Q ss_pred             HcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         83 EHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        83 ~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ..+ .+++++||+++.|++++|..+.
T Consensus        95 ~~g-~~v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157        95 NIG-YQVLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             HCC-CeEEEEecCCchhHHHHHhhhc
Confidence            466 5699999999999999998875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=5.7e-14  Score=93.31  Aligned_cols=104  Identities=20%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC--CHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV--DINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~   78 (142)
                      ||||++.|..++..++..+|++++|+|+++........ .+..+.       ..++|+++|+||+|+.....  ......
T Consensus        56 DtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~  127 (168)
T cd01887          56 DTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIE-AIKLAK-------AANVPFIVALNKIDKPNANPERVKNELS  127 (168)
T ss_pred             eCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHH-HHHHHH-------HcCCCEEEEEEceecccccHHHHHHHHH
Confidence            89999999999999999999999999998743222211 122221       14689999999999864110  011111


Q ss_pred             HHHH----HcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         79 CFYK----EHN-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~~~----~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .+..    ..+ ..+++++|++++.|+.+++++|.++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         128 ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             HhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            1111    111 146899999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.56  E-value=8.2e-14  Score=92.54  Aligned_cols=102  Identities=26%  Similarity=0.317  Sum_probs=83.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |||||+||..||+.+++++.++|+++|.+.+..+ .....+..+...      ..+|+++.+||.|+.+ ....+.+..+
T Consensus        74 gtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------~~ip~vVa~NK~DL~~-a~ppe~i~e~  145 (187)
T COG2229          74 GTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------NPIPVVVAINKQDLFD-ALPPEKIREA  145 (187)
T ss_pred             cCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------cCCCEEEEeeccccCC-CCCHHHHHHH
Confidence            7999999999999999999999999999999988 445555555321      2399999999999976 4466777776


Q ss_pred             HHHc-CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEH-NFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      .... -..|++.++|..+.+..+.++.+...
T Consensus       146 l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         146 LKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            6665 23679999999999999888887765

>cd01878 HflX HflX subfamily

Probab=99.55  E-value=5.1e-14  Score=96.84  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             CCCcc---------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQ---------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~---------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||+         +.|...+ ..+.++|++++|+|++++.++.....|...+...    ...++|+++|+||+|+....
T Consensus        95 Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~----~~~~~~viiV~NK~Dl~~~~  169 (204)
T cd01878          95 DTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL----GAEDIPMILVLNKIDLLDDE  169 (204)
T ss_pred             CCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc----CcCCCCEEEEEEccccCChH
Confidence            89997         3333333 2466899999999999988888777777666421    22468999999999986521


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                          ....++.... .+++++||+++.|+.+++++|...
T Consensus       170 ----~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         170 ----ELEERLEAGR-PDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             ----HHHHHhhcCC-CceEEEEcCCCCCHHHHHHHHHhh
Confidence                1113333333 569999999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.55  E-value=4.3e-14  Score=97.37  Aligned_cols=101  Identities=11%  Similarity=0.121  Sum_probs=70.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---C
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---D   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~   73 (142)
                      ||||+++|...+...+..+|++++|+|++++    .++..+..| ...         ...|+++|+||+|+.....   .
T Consensus        89 DtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~---------~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          89 DCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM---------GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             ECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc---------CCCcEEEEEEchhccCHHHHHHH
Confidence            8999999988888888899999999999874    233322222 111         2347999999999864111   1


Q ss_pred             HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .+.+..++..+  ...+++++||+++.|++++|+.|...+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            12333333332  124689999999999999999998755

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.55  E-value=8.2e-14  Score=109.32  Aligned_cols=105  Identities=12%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|...+..+++.+|++|+|+|+++..+......|.....        .++|+|+|+||+|+.... .......+
T Consensus        80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~-~~~v~~ei  150 (600)
T PRK05433         80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAAD-PERVKQEI  150 (600)
T ss_pred             ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCccc-HHHHHHHH
Confidence            899999999999999999999999999998766666666654442        478999999999985421 22223444


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ...+++.  .++.+||++|.|+.++++.|...+...
T Consensus       151 ~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        151 EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            4545532  389999999999999999999887554

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.54  E-value=4.1e-14  Score=96.30  Aligned_cols=104  Identities=20%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~   77 (142)
                      ||||+.+|...+...+..+|++|+|+|+.+.......+.| ..+..       .++|+|+|+||+|+..   .....+..
T Consensus        76 DtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-~~~~~-------~~~p~ivvlNK~D~~~~~~~~~~~~~~  147 (188)
T PF00009_consen   76 DTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHL-KILRE-------LGIPIIVVLNKMDLIEKELEEIIEEIK  147 (188)
T ss_dssp             EESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-HHHHH-------TT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred             ccccccceeecccceecccccceeeeeccccccccccccc-ccccc-------cccceEEeeeeccchhhhHHHHHHHHH
Confidence            8999999999998899999999999999976554443333 22221       4789999999999863   11111111


Q ss_pred             HHHHHHcC-----CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         78 ECFYKEHN-----FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        78 ~~~~~~~~-----~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ..+.+..+     ..|++++||.+|.|+.+|++.|..++.
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            13334443     357999999999999999999988763

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.54  E-value=6.8e-14  Score=107.34  Aligned_cols=107  Identities=18%  Similarity=0.112  Sum_probs=75.6

Q ss_pred             CCCcc----------hhhhhhh-HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQ----------ERFTWMT-RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~----------e~~~~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+          +.|..+. ..+++++|++++|+|++++.++.... ++..+.       ..++|+|+|+||+|+..
T Consensus       265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~-------~~~~piIiV~NK~Dl~~  336 (472)
T PRK03003        265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI-------EAGRALVLAFNKWDLVD  336 (472)
T ss_pred             ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECcccCC
Confidence            89994          5565554 34678999999999999988888764 444442       14789999999999964


Q ss_pred             CCC---CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 RQV---DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 ~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ...   ....+..........+++++||++|.|++++|..+...+....
T Consensus       337 ~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        337 EDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             hhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            111   1111222222233467999999999999999999988775443

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.54  E-value=2.8e-13  Score=87.32  Aligned_cols=105  Identities=33%  Similarity=0.513  Sum_probs=79.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH-HH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI-EC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~-~~   79 (142)
                      ||||+..+...+..++..+|++++|+|++++.++.....|.....   ......++|+++|+||+|+.......... ..
T Consensus        51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~  127 (157)
T cd00882          51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLIL---INKEGENIPIILVGNKIDLPEERVVSEEELAE  127 (157)
T ss_pred             ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH---HhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence            899999999988999999999999999999999888877732222   12234689999999999986522222221 22


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ........+++++|+..+.|+.+++.+|.
T Consensus       128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         128 QLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            33333346799999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.54  E-value=7.1e-14  Score=95.52  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC--CCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ--VDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~   78 (142)
                      ||||+++|..++..+++++|++++|||+++.. +.....|+..+.       ..++|+++|+||+|+....  ...+.+.
T Consensus        71 DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~-------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~  142 (194)
T cd01891          71 DTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-------ELGLKPIVVINKIDRPDARPEEVVDEVF  142 (194)
T ss_pred             ECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH-------HcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence            89999999999999999999999999998742 223334444432       1478999999999986421  1223334


Q ss_pred             HHHHHc-------CCceEEEeeccCCCCH
Q psy10891         79 CFYKEH-------NFIGWTETSTKEGLMV  100 (142)
Q Consensus        79 ~~~~~~-------~~~~~~~~Sa~~~~~i  100 (142)
                      .++...       + .+++++||++|.|+
T Consensus       143 ~~~~~~~~~~~~~~-~~iv~~Sa~~g~~~  170 (194)
T cd01891         143 DLFIELGATEEQLD-FPVLYASAKNGWAS  170 (194)
T ss_pred             HHHHHhCCccccCc-cCEEEeehhccccc
Confidence            444322       3 46899999999765

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.54  E-value=1.8e-13  Score=92.39  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=76.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~   77 (142)
                      ||||+..|...+..+++.+|++++|+|++++.+.... .++..+..       .+.|+++|+||+|+.....   ..+.+
T Consensus        68 DtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~  139 (189)
T cd00881          68 DTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREI  139 (189)
T ss_pred             eCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHH
Confidence            8999999999999999999999999999887654432 34444321       4799999999999864111   12223


Q ss_pred             HHHHHHc-------------CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         78 ECFYKEH-------------NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        78 ~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .......             ...+++++||+++.|+.+++.++...+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            3333332             235689999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.53  E-value=1.3e-13  Score=101.35  Aligned_cols=108  Identities=11%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             CCCcchh----hhhhhHhh---hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQER----FTWMTRVY---YKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~----~~~~~~~~---~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||||+..    ...+...+   +.+++++++|+|+++.   .+++.+..|..++..+.  ......|+++|+||+|+...
T Consensus       211 D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~--~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       211 DIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS--PELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             eCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh--hhhccCCEEEEEeCccCCCh
Confidence            8999743    22344444   4579999999999976   67778888887775332  11247899999999998653


Q ss_pred             CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ....+..+.+.+..+ .+++++||+++.|+++++.+|...+
T Consensus       289 ~~~~~~~~~l~~~~~-~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       289 EELAELLKELKKALG-KPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHHHHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence            222334444555556 4699999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0076|consensus

Probab=99.52  E-value=3.5e-14  Score=93.44  Aligned_cols=110  Identities=23%  Similarity=0.303  Sum_probs=86.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |..||+..+++|..||..++++|+++|+++++-|+....-++.+.   ......++|+++.+||.|+.+ ....+++...
T Consensus        75 dlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~---~~E~leg~p~L~lankqd~q~-~~~~~El~~~  150 (197)
T KOG0076|consen   75 DLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVV---ENEKLEGAPVLVLANKQDLQN-AMEAAELDGV  150 (197)
T ss_pred             EcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHH---HHHHhcCCchhhhcchhhhhh-hhhHHHHHHH
Confidence            678999999999999999999999999999888877665555554   333457999999999999976 2233344333


Q ss_pred             HH---HcC--CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YK---EHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~---~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ..   ..+  -.++..|||.+|+||++-..|++..+.++
T Consensus       151 ~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  151 FGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            33   211  24688999999999999999999998776

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.52  E-value=4e-13  Score=93.15  Aligned_cols=111  Identities=30%  Similarity=0.345  Sum_probs=85.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN-QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ--------   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------   71 (142)
                      ||+||++|+.+++.|+.+++++++|||.++ ..+++....|...+....    ....|+++|+||+|+....        
T Consensus        60 Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~----~~~~~iilv~nK~Dl~~~~~~~~~~~~  135 (219)
T COG1100          60 DTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKIDLFDEQSSSEEILN  135 (219)
T ss_pred             cCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC----CCCceEEEEecccccccchhHHHHHHh
Confidence            899999999999999999999999999999 556677889998885332    2479999999999997621        


Q ss_pred             -----CCHHHHHHHHHHc--CCceEEEeecc--CCCCHHHHHHHHHHHHHHHh
Q psy10891         72 -----VDINDIECFYKEH--NFIGWTETSTK--EGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        72 -----~~~~~~~~~~~~~--~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~  115 (142)
                           .............  ....++++|++  .+.++.++|..+...+.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         136 QLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             hhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence                 1122222222222  11238999999  99999999999999987643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.51  E-value=1.9e-13  Score=106.96  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |||||++|..++..++..+|++++|+|+++...-...+.| ...       ...++|+++++||+|+..  ...+.....
T Consensus       141 DTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~-------~~~~vPiIVviNKiDl~~--~~~e~v~~~  210 (587)
T TIGR00487       141 DTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHA-------KAANVPIIVAINKIDKPE--ANPDRVKQE  210 (587)
T ss_pred             ECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHH-------HHcCCCEEEEEECccccc--CCHHHHHHH
Confidence            8999999999999999999999999999874322222222 122       114799999999999854  233344444


Q ss_pred             HHHcCC--------ceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEHNF--------IGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +...++        .+++++||++|.|+.++|+++..
T Consensus       211 L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       211 LSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            333331        36899999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.51  E-value=1.3e-13  Score=104.52  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             CCCcchhhhhhh-----------HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMT-----------RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~-----------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.++..+.           ..+++.+|++++|+|++++.+..... ++..+.       ..++|+|+|+||+|+..
T Consensus       226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~-------~~~~~iiiv~NK~Dl~~  297 (429)
T TIGR03594       226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL-------EAGKALVIVVNKWDLVK  297 (429)
T ss_pred             ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH-------HcCCcEEEEEECcccCC
Confidence            899975544321           34678999999999999987776643 333332       14689999999999862


Q ss_pred             CCCCHHHH-HHHHHH---cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 RQVDINDI-ECFYKE---HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ~~~~~~~~-~~~~~~---~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .....+.. ..+...   .+..+++++||++|.|+.++|.++...+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       298 DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            11111122 122222   2346799999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.51  E-value=1.6e-13  Score=98.45  Aligned_cols=103  Identities=16%  Similarity=-0.005  Sum_probs=73.7

Q ss_pred             CCCcchhhh--------hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFT--------WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~--------~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||+....        .....++.++|++++|+|+++..+..  ..++..+..       .+.|+++|+||+|+.....
T Consensus        54 DTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~~~  124 (270)
T TIGR00436        54 DTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFKDK  124 (270)
T ss_pred             ECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCHHH
Confidence            899975321        12345678999999999999876664  344444421       3689999999999864222


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ..+....++...++.+++++||++|.|++++++.+...+.
T Consensus       125 ~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       125 LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            2334444555555557999999999999999999988763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.50  E-value=2.6e-13  Score=108.01  Aligned_cols=101  Identities=14%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.|..++..++..+|++|+|+|+++.......+.|. .+.       ..++|+|+++||+|+...  ..+.+...
T Consensus       301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k-------~~~iPiIVViNKiDl~~~--~~e~v~~e  370 (742)
T CHL00189        301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQ-------AANVPIIVAINKIDKANA--NTERIKQQ  370 (742)
T ss_pred             ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHH-------hcCceEEEEEECCCcccc--CHHHHHHH
Confidence            89999999999999999999999999998753322222221 221       147899999999998642  22222222


Q ss_pred             H-------HHcC-CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 Y-------KEHN-FIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~-------~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +       ..++ ..+++++||++|.|+.++|..|....
T Consensus       371 L~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        371 LAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            2       2222 35799999999999999999988764

>cd01889 SelB_euk SelB subfamily

Probab=99.49  E-value=4.2e-13  Score=91.58  Aligned_cols=105  Identities=12%  Similarity=-0.039  Sum_probs=69.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~   77 (142)
                      ||||+..+....-.....+|++++|+|+++..+....+.|....  .      .+.|+++|+||+|+....   ...+.+
T Consensus        74 DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~--~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~  145 (192)
T cd01889          74 DCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE--I------LCKKLIVVLNKIDLIPEEERERKIEKM  145 (192)
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH--H------cCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            89999776544434456789999999998865444433332111  1      267999999999986411   112222


Q ss_pred             HHHHH-H-----cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         78 ECFYK-E-----HNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        78 ~~~~~-~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..... .     ....+++++||+++.|++++++.+..+++-
T Consensus       146 ~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         146 KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            22111 1     122569999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01894 EngA1 EngA1 subfamily

Probab=99.49  E-value=2.5e-13  Score=89.05  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=69.7

Q ss_pred             CCCcchhhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||+..+..        .+..+++++|++++|+|..+..+.... .+...+. .      .+.|+++|+||+|+.... 
T Consensus        51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~-~------~~~piiiv~nK~D~~~~~-  121 (157)
T cd01894          51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLR-K------SKKPVILVVNKVDNIKEE-  121 (157)
T ss_pred             ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHH-h------cCCCEEEEEECcccCChH-
Confidence            8999888554        345677899999999999876544432 2222221 1      258999999999986521 


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                        .. .......+..+++++|++++.|++++|++++.++
T Consensus       122 --~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         122 --DE-AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             --HH-HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence              11 2233445544689999999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0096|consensus

Probab=99.49  E-value=2.3e-14  Score=95.54  Aligned_cols=107  Identities=29%  Similarity=0.468  Sum_probs=89.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|||+|..+..-||-.+.++|++||++...++..+.+|...+.+.+     .++||+++|||.|...+.+....+ .+
T Consensus        65 dtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-----~NiPiv~cGNKvDi~~r~~k~k~v-~~  138 (216)
T KOG0096|consen   65 DTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-----ENIPIVLCGNKVDIKARKVKAKPV-SF  138 (216)
T ss_pred             ecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-----cCCCeeeeccceeccccccccccc-ee
Confidence            899999999999999999999999999999999999999999998777     789999999999986643222222 22


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      -+... +.++++||+++.|.+.-|.++.+.+...
T Consensus       139 ~rkkn-l~y~~iSaksn~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  139 HRKKN-LQYYEISAKSNYNFERPFLWLARKLTGD  171 (216)
T ss_pred             eeccc-ceeEEeecccccccccchHHHhhhhcCC
Confidence            33333 5699999999999999999999888654

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.48  E-value=4.6e-13  Score=99.20  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=71.3

Q ss_pred             CCCcc---------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQ---------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~---------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||.         +.|..++. .+.+||++++|+|++++.++.....|...+...    ...+.|+++|+||+|+... 
T Consensus       243 DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~-  316 (351)
T TIGR03156       243 DTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDE-  316 (351)
T ss_pred             ecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCCh-
Confidence            89997         44555444 578999999999999998887776665555321    2247899999999998541 


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                         .....+. . +..+++++||+++.|+++++..|...
T Consensus       317 ---~~v~~~~-~-~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       317 ---PRIERLE-E-GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ---HhHHHHH-h-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence               1222221 1 22358999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.48  E-value=5.6e-13  Score=86.78  Aligned_cols=103  Identities=22%  Similarity=0.357  Sum_probs=80.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ-NSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~   78 (142)
                      ||||++++..++..++..++.++.++|+... .++.... .|...+.+..   . .+.|+++++||+|+.... ......
T Consensus        56 D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~---~-~~~p~ivv~nK~D~~~~~-~~~~~~  130 (161)
T TIGR00231        56 DTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA---E-SNVPIILVGNKIDLRDAK-LKTHVA  130 (161)
T ss_pred             ECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc---c-cCCcEEEEEEcccCCcch-hhHHHH
Confidence            8999999999999999999999999999887 6666654 6776665433   2 278999999999986532 233334


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ......+..+++++||.++.|+.++|+.|.
T Consensus       131 ~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       131 FLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             HHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            444555556799999999999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.48  E-value=2.9e-13  Score=90.44  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=72.4

Q ss_pred             CCCcchh----hhhhh---HhhhccCCEEEEEEeCCCh------hhHHHHHHHHHHHHHhcccCC------CCCCCEEEE
Q psy10891          1 MTEGQER----FTWMT---RVYYKDAHGCIIMFDLTNQ------NSFKNTLKWKKDVDLKCTLSD------GSPIPCMLL   61 (142)
Q Consensus         1 Dt~G~e~----~~~~~---~~~~~~ad~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~------~~~~p~ilv   61 (142)
                      ||||+..    +..++   ..++.++|++++|+|++++      .++.....|...+....   .      ..+.|+++|
T Consensus        50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv  126 (176)
T cd01881          50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYD---LETILGLLTAKPVIYV  126 (176)
T ss_pred             eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhh---hhhHHHHHhhCCeEEE
Confidence            8999733    22232   3456789999999999988      57777777777764221   1      147899999


Q ss_pred             EeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        62 ~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +||+|+.. ...............+ .+++++||+++.|++++++++...
T Consensus       127 ~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         127 LNKIDLDDAEELEEELVRELALEEG-AEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEchhcCchhHHHHHHHHHHhcCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence            99999865 2111111112222233 459999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK04213 GTP-binding protein; Provisional

Probab=99.47  E-value=7e-13  Score=90.92  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             CCCc-----------chhhhhhhHhhhc----cCCEEEEEEeCCChhhHHH----------HHHHHHHHHHhcccCCCCC
Q psy10891          1 MTEG-----------QERFTWMTRVYYK----DAHGCIIMFDLTNQNSFKN----------TLKWKKDVDLKCTLSDGSP   55 (142)
Q Consensus         1 Dt~G-----------~e~~~~~~~~~~~----~ad~ii~v~d~~~~~s~~~----------~~~~~~~~~~~~~~~~~~~   55 (142)
                      ||||           +++|..++..|+.    .++++++|+|.+....+..          ...++..+.       ..+
T Consensus        58 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~  130 (201)
T PRK04213         58 DLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-------ELG  130 (201)
T ss_pred             eCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-------HcC
Confidence            8999           7899988888775    3578888888764322100          011122221       147


Q ss_pred             CCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC--------ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         56 IPCMLLANKCDLPHRQVDINDIECFYKEHNF--------IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        56 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +|+++|+||+|+....  .+....++..++.        .+++++||++| |++++|.+|...+..
T Consensus       131 ~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        131 IPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CCeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            9999999999985422  3445566666663        14799999999 999999999987643

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.46  E-value=5.5e-13  Score=104.47  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=76.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC---CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ---VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~---~~   73 (142)
                      ||||+++|...+..++.++|++++|+|+++   +.+++.+. ++..          .++| +|+|+||+|+.+..   ..
T Consensus        56 DtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-il~~----------lgi~~iIVVlNK~Dlv~~~~~~~~  124 (581)
T TIGR00475        56 DVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-VLDL----------LGIPHTIVVITKADRVNEEEIKRT  124 (581)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-HHHH----------cCCCeEEEEEECCCCCCHHHHHHH
Confidence            899999999999999999999999999998   44544432 2211          2677 99999999986511   12


Q ss_pred             HHHHHHHHHHcC---CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEHN---FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        74 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .+.+..++...+   ..+++++||++|.|+++++..+...+-.
T Consensus       125 ~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       125 EMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            334555555543   2579999999999999999988776644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.46  E-value=6.6e-13  Score=106.45  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=71.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC-   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-   79 (142)
                      ||||++.|..++..++..+|++|+|||+++...-.....|. ..       ...++|+|+++||+|+...  ..+.... 
T Consensus       343 DTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~-~a-------~~~~vPiIVviNKiDl~~a--~~e~V~~e  412 (787)
T PRK05306        343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN-HA-------KAAGVPIIVAINKIDKPGA--NPDRVKQE  412 (787)
T ss_pred             ECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH-HH-------HhcCCcEEEEEECcccccc--CHHHHHHH
Confidence            89999999999999999999999999998843222222231 11       1247999999999998541  1222221 


Q ss_pred             ------HHHHcC-CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         80 ------FYKEHN-FIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        80 ------~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                            ++..++ ..+++++||++|.|+.++|+.|...
T Consensus       413 L~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        413 LSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence                  122232 2569999999999999999998764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.45  E-value=6.7e-13  Score=101.93  Aligned_cols=101  Identities=20%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             CCCcch--------hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQE--------RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e--------~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||++        .+...+..+++++|++|||+|+++..++.. ..|...+..       .++|+++|+||+|+...  
T Consensus        92 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~--  161 (472)
T PRK03003         92 DTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERG--  161 (472)
T ss_pred             eCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCcc--
Confidence            899976        355567778999999999999998766554 344444431       47999999999998542  


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..+....+  ..++..+++|||++|.|++++|++++..+.+
T Consensus       162 ~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        162 EADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             chhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            11222222  3344346799999999999999999988855

>KOG0071|consensus

Probab=99.45  E-value=9e-13  Score=84.13  Aligned_cols=107  Identities=18%  Similarity=0.260  Sum_probs=82.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |++||++.+.+|+.||.++.++|||+|..+....+..++-+-.+   ++.....+.|+++.+||.|+.. .....++..+
T Consensus        67 dvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~i---i~~~em~~~~~LvlANkQDlp~-A~~pqei~d~  142 (180)
T KOG0071|consen   67 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRI---INDREMRDAIILILANKQDLPD-AMKPQEIQDK  142 (180)
T ss_pred             eccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHH---hCCHhhhcceEEEEecCccccc-ccCHHHHHHH
Confidence            78999999999999999999999999998876666555433333   3555667999999999999976 3456666666


Q ss_pred             HHHcCC--ce--EEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEHNF--IG--WTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~~~--~~--~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ......  .+  +..+||.++.|+.+-|.++...+
T Consensus       143 leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  143 LELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             hccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            543221  11  66899999999999999998654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.44  E-value=1.5e-12  Score=101.84  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=70.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CC-C--
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQ-V--   72 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~-~--   72 (142)
                      |||||+.|..++..+++.+|++++|+|+++   +.++..+..    +.       ..++|+++++||+|+..  .. .  
T Consensus        75 DTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~-------~~~vpiIVv~NK~Dl~~~~~~~~~~  143 (590)
T TIGR00491        75 DTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR-------MYKTPFVVAANKIDRIPGWRSHEGR  143 (590)
T ss_pred             ECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH-------HcCCCEEEEEECCCccchhhhccCc
Confidence            899999999999999999999999999987   445444321    21       13789999999999853  00 0  


Q ss_pred             --------CHHH------------HHHHHH------------Hc-CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         73 --------DIND------------IECFYK------------EH-NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        73 --------~~~~------------~~~~~~------------~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                              ....            ...+..            .+ +..+++.+||++|+|+++++.++....
T Consensus       144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                    0000            001110            11 235789999999999999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.42  E-value=3.9e-12  Score=96.08  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=79.3

Q ss_pred             CCCcchh----hhhhhHhhh---ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQER----FTWMTRVYY---KDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~----~~~~~~~~~---~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||||...    ...+...|+   .+++++++|+|+++.   .+++....|..++..+.  ....++|+++|+||+|+.. 
T Consensus       212 D~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~--~~L~~kP~IVV~NK~DL~~-  288 (424)
T PRK12297        212 DIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN--PRLLERPQIVVANKMDLPE-  288 (424)
T ss_pred             ECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc--hhccCCcEEEEEeCCCCcC-
Confidence            8898632    223444454   469999999999864   56777778888876332  1124789999999999843 


Q ss_pred             CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                        ..+.+..+++.++ .+++.+||+++.|+++++.+|...+.+.
T Consensus       289 --~~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        289 --AEENLEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             --CHHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence              2345566677766 5699999999999999999999887654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.42  E-value=2.2e-12  Score=98.12  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=75.0

Q ss_pred             CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||+..+...        ...+++++|++++|||++++.++...  |+..+.       ..++|+++|+||+|+...  
T Consensus       257 DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~-------~~~~piIlV~NK~Dl~~~--  325 (442)
T TIGR00450       257 DTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN-------KSKKPFILVLNKIDLKIN--  325 (442)
T ss_pred             eCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh-------hCCCCEEEEEECccCCCc--
Confidence            89998665432        24678899999999999998887764  766552       146899999999998542  


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                         ....+++..+ .+++.+||++ .||.++|+.+...+.+..
T Consensus       326 ---~~~~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       326 ---SLEFFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             ---chhhhhhhcC-CceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence               1233455555 4589999998 699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK11058 GTPase HflX; Provisional

Probab=99.42  E-value=3e-12  Score=96.95  Aligned_cols=105  Identities=19%  Similarity=0.079  Sum_probs=71.1

Q ss_pred             CCCcchhh--hhhh------HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERF--TWMT------RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~--~~~~------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||..+.  ..++      ...+.+||++++|+|++++.++..+..|...+...    ...++|+++|+||+|+.... 
T Consensus       251 DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~-  325 (426)
T PRK11058        251 DTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDF-  325 (426)
T ss_pred             ecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCch-
Confidence            89998442  2222      23468999999999999988777765444433211    22478999999999986421 


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       .....  ....+...++++||++|.|+++++++|...+..
T Consensus       326 -~~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        326 -EPRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             -hHHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence             11111  112342225889999999999999999998854

>KOG1673|consensus

Probab=99.41  E-value=1.4e-12  Score=84.60  Aligned_cols=107  Identities=24%  Similarity=0.320  Sum_probs=85.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CC----CCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQ----VDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~----~~~   74 (142)
                      |..||+++..+.+..+.++-+++|+||++.+.++..+..|+.+.+    ......+| |+||+|.|+.-  ..    .-.
T Consensus        75 dlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr----~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~  149 (205)
T KOG1673|consen   75 DLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQAR----GLNKTAIP-ILVGTKYDLFIDLPPELQETIS  149 (205)
T ss_pred             ecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHh----ccCCccce-EEeccchHhhhcCCHHHHHHHH
Confidence            789999999999999999999999999999999999999999884    33334566 67899999643  11    112


Q ss_pred             HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .....+++..+ .+.++||+..+-++..+|.-+...+++
T Consensus       150 ~qar~YAk~mn-AsL~F~Sts~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  150 RQARKYAKVMN-ASLFFCSTSHSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHhC-CcEEEeeccccccHHHHHHHHHHHHhC
Confidence            23445666777 458999999999999999888777765

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.40  E-value=4.4e-12  Score=88.67  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=66.6

Q ss_pred             CCCcchhhhhhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~   78 (142)
                      ||||+++|...+...+.  .+|++++|+|++.+.+-.. ..++..+..       .++|+++|.||+|+.++........
T Consensus        90 DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~-------~~ip~ivvvNK~D~~~~~~~~~~~~  161 (224)
T cd04165          90 DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA-------LNIPVFVVVTKIDLAPANILQETLK  161 (224)
T ss_pred             ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEECccccCHHHHHHHHH
Confidence            89999999876555553  6899999999987644333 233333321       3689999999999865221122222


Q ss_pred             HHHHHcC----------------------------CceEEEeeccCCCCHHHHHHHHH
Q psy10891         79 CFYKEHN----------------------------FIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        79 ~~~~~~~----------------------------~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      .+...+.                            ..|++.+|+.+|.|+++++..|.
T Consensus       162 ~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         162 DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            2222211                            24799999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.39  E-value=1.8e-12  Score=98.97  Aligned_cols=95  Identities=15%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||++.+...        ...++.++|++++|+|++++.++.....|.. .         .+.|+++|+||+|+.....
T Consensus       269 DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~---------~~~piiiV~NK~DL~~~~~  338 (449)
T PRK05291        269 DTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-L---------KDKPVIVVLNKADLTGEID  338 (449)
T ss_pred             eCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-c---------CCCCcEEEEEhhhccccch
Confidence            89998765432        2346889999999999999888776544433 1         4789999999999864211


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       ..      ...+ .+++++||++|.|+++++.+|...+..
T Consensus       339 -~~------~~~~-~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        339 -LE------EENG-KPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             -hh------hccC-CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence             11      2223 468999999999999999999998754

>PRK15494 era GTPase Era; Provisional

Probab=99.39  E-value=3.9e-12  Score=93.92  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             CCCcch-hhhhhh-------HhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQE-RFTWMT-------RVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e-~~~~~~-------~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||+. .+..+.       ..++.++|+++||+|..+.  +.... .|+..+..       .+.|.|+|+||+|+... 
T Consensus       106 DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~-------~~~p~IlViNKiDl~~~-  175 (339)
T PRK15494        106 DTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRS-------LNIVPIFLLNKIDIESK-  175 (339)
T ss_pred             ECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh-------cCCCEEEEEEhhcCccc-
Confidence            899984 333322       2346799999999998763  43433 45555531       24678899999998542 


Q ss_pred             CCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       ....+..++.... ..+++++||++|.|++++|++|...+..
T Consensus       176 -~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        176 -YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             -cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence             2344555555443 3568999999999999999999887754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.39  E-value=4.6e-12  Score=96.38  Aligned_cols=106  Identities=11%  Similarity=0.028  Sum_probs=71.4

Q ss_pred             CCCcch----------hhhhhh-HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQE----------RFTWMT-RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e----------~~~~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||..          .|..+. ..+++.+|++++|+|++++.+..+.. ++..+..       .+.|+++|+||+|+..
T Consensus       227 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-------~~~~~ivv~NK~Dl~~  298 (435)
T PRK00093        227 DTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-------AGRALVIVVNKWDLVD  298 (435)
T ss_pred             ECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEECccCCC
Confidence            899954          333222 34678999999999999987776643 3333321       4689999999999864


Q ss_pred             CCCCHHHHHHH---HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 RQVDINDIECF---YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .....+....+   .......|++++||+++.|++++++.+.......
T Consensus       299 ~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        299 EKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             HHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            11111111112   2223346799999999999999999988766543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.38  E-value=7.5e-12  Score=93.86  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=77.8

Q ss_pred             CCCcchhh-------hhhhHhhhccCCEEEEEEeCC---ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQERF-------TWMTRVYYKDAHGCIIMFDLT---NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~~-------~~~~~~~~~~ad~ii~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||||.-+-       ....-.++.++|++++|+|++   ....+.....|+.++..+.  ....+.|+|+|+||+|+...
T Consensus       213 DtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~--~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        213 DIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS--PKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             eCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh--hhhcCCCEEEEEeCCccCCh
Confidence            89996431       111223578999999999998   4456677777887775332  01136899999999998653


Q ss_pred             CCCHHHHHHHHHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         71 QVDINDIECFYKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ....+.+..+.+..+. .+++.+||+++.+++++++.|...+.+.
T Consensus       291 ~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        291 EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            2223444455555443 2589999999999999999999988653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.38  E-value=4.5e-12  Score=99.84  Aligned_cols=100  Identities=13%  Similarity=0.104  Sum_probs=72.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC---CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ---VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~---~~   73 (142)
                      ||||+++|...+...+.++|++++|+|+++.   .+.+.+. ++..          .++| +|+|+||+|+.+..   ..
T Consensus        57 DtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-il~~----------lgi~~iIVVlNKiDlv~~~~~~~v  125 (614)
T PRK10512         57 DVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA-ILQL----------TGNPMLTVALTKADRVDEARIAEV  125 (614)
T ss_pred             ECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-HHHH----------cCCCeEEEEEECCccCCHHHHHHH
Confidence            8999999988888889999999999999874   3433322 2221          2456 57999999986411   11


Q ss_pred             HHHHHHHHHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        74 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .+++..++...++  .+++.+||++|.|++++++.|....
T Consensus       126 ~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        126 RRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            2344444544443  5799999999999999999998654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.37  E-value=4.1e-12  Score=99.72  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=73.2

Q ss_pred             CCCcchhhhhh------hHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFTWM------TRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~~~------~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||++++...      .+.|+  .++|++++|+|.++.+.   ...+..++.       ..++|+++|+||+|+.+ +.
T Consensus        47 DtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~-------~~~~PiIIVlNK~Dl~~~~~  116 (591)
T TIGR00437        47 DLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLL-------ELGIPMILALNLVDEAEKKG  116 (591)
T ss_pred             ECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHH-------hcCCCEEEEEehhHHHHhCC
Confidence            89999988754      34444  37999999999987432   122333332       14789999999999865 33


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +. .+.+.+.+..+ .+++++||+++.|++++++.+.+..
T Consensus       117 i~-~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       117 IR-IDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             Ch-hhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            33 34567788888 5799999999999999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.37  E-value=4.3e-12  Score=95.82  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=71.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~   76 (142)
                      |||||++|...+...+..+|++++|+|++++. .... ...+..+.. .     .-.|+++|+||+|+.+...   ..+.
T Consensus        86 DtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~-~-----gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        86 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEI-I-----GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             ECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHH-c-----CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            89999999998888888999999999999643 1111 112222211 1     2346899999999865111   1223


Q ss_pred             HHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         77 IECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        77 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +..+....  ...+++++||+++.|++++++.|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            33333332  1256999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.36  E-value=5.8e-12  Score=100.97  Aligned_cols=105  Identities=17%  Similarity=0.129  Sum_probs=73.2

Q ss_pred             CCCcc----------hhhhhhh-HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQ----------ERFTWMT-RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~----------e~~~~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+          +.|..+. ..+++.+|++++|+|+++..++.....| ..+..       .++|+|+|+||+|+.+
T Consensus       504 DTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-------~~~piIiV~NK~DL~~  575 (712)
T PRK09518        504 DTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-------AGRALVLVFNKWDLMD  575 (712)
T ss_pred             ECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCEEEEEEchhcCC
Confidence            89995          4444443 3457899999999999998888776533 33321       4789999999999864


Q ss_pred             CCCCHHHHHH-HHHH---cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 RQVDINDIEC-FYKE---HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ~~~~~~~~~~-~~~~---~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .. ..+.... +...   ..+.+++++||++|.|++++|..+.+.+...
T Consensus       576 ~~-~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        576 EF-RRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             hh-HHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            11 1122222 2222   2335678999999999999999998887654

>PRK00089 era GTPase Era; Reviewed

Probab=99.35  E-value=7.6e-12  Score=90.59  Aligned_cols=104  Identities=16%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             CCCcchhh--------hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERF--------TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~--------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||....        ......++.++|++++|+|+++..+.. ...++..+.       ..+.|+++|+||+|+.. ..
T Consensus        59 DTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~-~~~i~~~l~-------~~~~pvilVlNKiDl~~~~~  130 (292)
T PRK00089         59 DTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPG-DEFILEKLK-------KVKTPVILVLNKIDLVKDKE  130 (292)
T ss_pred             ECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChh-HHHHHHHHh-------hcCCCEEEEEECCcCCCCHH
Confidence            89995332        233445678999999999998842222 122333332       13689999999999973 23


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .....+..+....++.+++.+||+++.|+++++..+...+.
T Consensus       131 ~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        131 ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            33445555666666677999999999999999999988874

>cd01895 EngA2 EngA2 subfamily

Probab=99.35  E-value=2.1e-11  Score=80.88  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC-CCHHH-HHHHHHHcC---Cce
Q psy10891         14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-VDIND-IECFYKEHN---FIG   88 (142)
Q Consensus        14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~-~~~~~~~~~---~~~   88 (142)
                      .++.++|++++|+|++++.+..... ++..+.       ..+.|+++++||+|+.... ...+. ...+....+   ..+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL-------EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP  151 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH-------hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence            3567999999999999987765533 333332       1368999999999986521 22222 222233332   356


Q ss_pred             EEEeeccCCCCHHHHHHHHHHH
Q psy10891         89 WTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        89 ~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ++.+||+++.|+.+++..+.+.
T Consensus       152 ~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         152 IVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eEEEeccCCCCHHHHHHHHHHh
Confidence            9999999999999999988754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.34  E-value=1.1e-11  Score=81.17  Aligned_cols=94  Identities=16%  Similarity=0.076  Sum_probs=68.6

Q ss_pred             CCCcchhhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||...+..        ....++..+|++++|+|++++.+......|..          ..+.|+++|+||+|+.....
T Consensus        55 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~  124 (157)
T cd04164          55 DTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSE  124 (157)
T ss_pred             ECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCccc
Confidence            8999765542        23346779999999999998777666544322          15799999999999875221


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .      ...... .+++++||+++.|+.+++.+|...+
T Consensus       125 ~------~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         125 L------LSLLAG-KPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             c------ccccCC-CceEEEECCCCCCHHHHHHHHHHhh
Confidence            1      222223 5699999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.34  E-value=1.7e-11  Score=93.12  Aligned_cols=101  Identities=18%  Similarity=0.150  Sum_probs=73.7

Q ss_pred             CCCcc--------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQ--------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~--------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||.        +.+...+..+++++|++++|+|..++.+..+. .+...+.+       .++|+++|+||+|+.....
T Consensus        53 DTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-------~~~piilVvNK~D~~~~~~  124 (429)
T TIGR03594        53 DTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-------SGKPVILVANKIDGKKEDA  124 (429)
T ss_pred             ECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------hCCCEEEEEECccCCcccc
Confidence            89995        56666778889999999999999876554431 22222321       3689999999999865221


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .   . ..+..+++.+++++||.+|.|+.++++.+...+..
T Consensus       125 ~---~-~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       125 V---A-AEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             c---H-HHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence            1   1 12345676579999999999999999999887744

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.3e-11  Score=90.47  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~   77 (142)
                      |||||+.|..|+..-..=+|++|+|+++++.   ++.+.+.    ..       ...++|++++.||+|..+  ..+...
T Consensus        61 DTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~----ha-------k~a~vP~iVAiNKiDk~~--~np~~v  127 (509)
T COG0532          61 DTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN----HA-------KAAGVPIVVAINKIDKPE--ANPDKV  127 (509)
T ss_pred             cCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH----HH-------HHCCCCEEEEEecccCCC--CCHHHH
Confidence            8999999999998888889999999999985   3444322    12       225899999999999864  334444


Q ss_pred             HHHHHHcCC--------ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         78 ECFYKEHNF--------IGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        78 ~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ..-..++|+        ..++.+||++|+|+.+|+..+.-..--...
T Consensus       128 ~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~el  174 (509)
T COG0532         128 KQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLEL  174 (509)
T ss_pred             HHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhh
Confidence            444444454        348899999999999999988766655433

>cd04163 Era Era subfamily

Probab=99.33  E-value=1.5e-11  Score=80.94  Aligned_cols=102  Identities=17%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             CCCcchhh--------hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERF--------TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~--------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||....        ......++..+|++++|+|++++.+... ..+...+..       .+.|+++|+||+|+.. ..
T Consensus        57 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~-~~~~~~~~~-------~~~~~iiv~nK~Dl~~~~~  128 (168)
T cd04163          57 DTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGD-EFILELLKK-------SKTPVILVLNKIDLVKDKE  128 (168)
T ss_pred             ECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchH-HHHHHHHHH-------hCCCEEEEEEchhccccHH
Confidence            78995433        2344556789999999999998732221 223333321       2589999999999863 22


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ...+....+....+..+++++|++++.++++++..|.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         129 DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            233344444555544679999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.33  E-value=1.8e-11  Score=93.16  Aligned_cols=95  Identities=20%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||||++.        +......++.++|++++|+|.+++.+..+  +..|+..          .+.|+++|+||+|+...
T Consensus        55 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~----------~~~piilv~NK~D~~~~  124 (435)
T PRK00093         55 DTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK----------SNKPVILVVNKVDGPDE  124 (435)
T ss_pred             ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCCcEEEEEECccCccc
Confidence            8999887        33345667899999999999988654433  2233332          27899999999997431


Q ss_pred             CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                         ......+ ...++..++++||++|.|+.++++.+..
T Consensus       125 ---~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        125 ---EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ---hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence               1222222 3456445899999999999999999987

>cd01855 YqeH YqeH

Probab=99.32  E-value=2.6e-11  Score=82.67  Aligned_cols=97  Identities=14%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH----
Q psy10891          6 ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY----   81 (142)
Q Consensus         6 e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----   81 (142)
                      ..|..++..+++++|++++|+|++++..     .|...+..     ...+.|+++|+||+|+............+.    
T Consensus        22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~-----~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~   91 (190)
T cd01855          22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRL-----FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA   91 (190)
T ss_pred             HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHH-----hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH
Confidence            3357788999999999999999987642     12222211     114689999999999875333344444443    


Q ss_pred             -HHcCC--ceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         82 -KEHNF--IGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        82 -~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                       ...+.  .+++.+||+++.|+++++..|...+.
T Consensus        92 ~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          92 AAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence             22332  25899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd00880 Era_like Era (E

Probab=99.32  E-value=1.3e-11  Score=80.41  Aligned_cols=101  Identities=14%  Similarity=0.086  Sum_probs=71.2

Q ss_pred             CCCcchhhhhh-------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTWM-------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~-------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~   73 (142)
                      ||||+..+...       +..++..+|++++|+|..++.+..... |.....       ..+.|+++|+||+|+.... .
T Consensus        51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~-------~~~~~~ivv~nK~D~~~~~-~  121 (163)
T cd00880          51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR-------ERGKPVLLVLNKIDLLPEE-E  121 (163)
T ss_pred             ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-------hcCCeEEEEEEccccCChh-h
Confidence            89998776543       345788999999999999987666544 333332       2579999999999986521 1


Q ss_pred             HHHH----HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         74 INDI----ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        74 ~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ....    ..........+++++|+.++.|+.++++++...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            1111    111222233679999999999999999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.32  E-value=1.6e-11  Score=92.84  Aligned_cols=102  Identities=12%  Similarity=0.083  Sum_probs=68.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh----hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC---
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN----SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD---   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---   73 (142)
                      ||||+++|....-.....+|++++|+|++++.    +...+. ++...         .-.|+++|+||+|+.+....   
T Consensus        91 DtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~---------~i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         91 DAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDII---------GIKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc---------CCCcEEEEEEeeccccchhHHHH
Confidence            89999998876555566789999999999642    333222 11111         22468999999998652111   


Q ss_pred             HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .+.+..++...  ...+++++||+++.|++++++.|...+.
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            12333333322  1256999999999999999999987663

>KOG0462|consensus

Probab=99.31  E-value=7.1e-12  Score=95.34  Aligned_cols=107  Identities=15%  Similarity=0.200  Sum_probs=85.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |||||-+|+.-....+.-++++++|+|+.....-+...+++..+.        .+.-+|.|.||+|+... .......++
T Consensus       131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--------~~L~iIpVlNKIDlp~a-dpe~V~~q~  201 (650)
T KOG0462|consen  131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--------AGLAIIPVLNKIDLPSA-DPERVENQL  201 (650)
T ss_pred             cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--------cCCeEEEeeeccCCCCC-CHHHHHHHH
Confidence            899999999999889999999999999998877777777777775        57889999999999752 123333344


Q ss_pred             HHHcCC--ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         81 YKEHNF--IGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        81 ~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ...+++  .+.+.+||++|.+++++++.|++.+.-.+.
T Consensus       202 ~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~  239 (650)
T KOG0462|consen  202 FELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG  239 (650)
T ss_pred             HHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence            444443  358999999999999999999998865443

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.30  E-value=8.7e-12  Score=94.71  Aligned_cols=98  Identities=10%  Similarity=0.045  Sum_probs=67.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC----CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ----VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~----~~   73 (142)
                      |||||++|...+..++..+|++++|+|+++..++...  ..++. +.+..     ...|+|+|+||+|+.. ..    ..
T Consensus        91 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-----~~~~iIVviNK~Dl~~~~~~~~~~~  164 (426)
T TIGR00483        91 DCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-----GINQLIVAINKMDSVNYDEEEFEAI  164 (426)
T ss_pred             ECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-----CCCeEEEEEEChhccCccHHHHHHH
Confidence            8999999988777778999999999999987543211  11111 11111     2357999999999863 11    12


Q ss_pred             HHHHHHHHHHcCC----ceEEEeeccCCCCHHHHH
Q psy10891         74 INDIECFYKEHNF----IGWTETSTKEGLMVNDSM  104 (142)
Q Consensus        74 ~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~  104 (142)
                      ..++..+++..++    .+++++||+++.|+.+.+
T Consensus       165 ~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       165 KKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            3455566666653    469999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.30  E-value=3.3e-11  Score=82.59  Aligned_cols=92  Identities=12%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~   75 (142)
                      ||||+.+|.......+..+|++++|+|+....+-... ..+..+..       .++| +|++.||+|+.. ..   ...+
T Consensus        71 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-------~~~~~iIvviNK~D~~~~~~~~~~~~~  142 (195)
T cd01884          71 DCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ-------VGVPYIVVFLNKADMVDDEELLELVEM  142 (195)
T ss_pred             ECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-------cCCCcEEEEEeCCCCCCcHHHHHHHHH
Confidence            8999999988888888999999999999875433332 23333321       3566 789999999853 11   1223


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCCCH
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGLMV  100 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~~i  100 (142)
                      ++..+....++    .+++++||.+|.++
T Consensus       143 ~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         143 EVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            45555555554    57999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.29  E-value=1.9e-11  Score=79.18  Aligned_cols=97  Identities=22%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             CCCc----chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH
Q psy10891          1 MTEG----QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND   76 (142)
Q Consensus         1 Dt~G----~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~   76 (142)
                      ||||    ...|.+-.-....+||++++|.|.+++.+.-. ..+...          -+.|+|-|+||+|+.......+.
T Consensus        42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-P~fa~~----------f~~pvIGVITK~Dl~~~~~~i~~  110 (143)
T PF10662_consen   42 DTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-PGFASM----------FNKPVIGVITKIDLPSDDANIER  110 (143)
T ss_pred             ECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-chhhcc----------cCCCEEEEEECccCccchhhHHH
Confidence            7888    44444444444568999999999998743222 122111          26899999999999743456777


Q ss_pred             HHHHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ...+++..|...+|++|+.+|+|+++|.+.|-
T Consensus       111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            78889999988899999999999999998763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.29  E-value=3.9e-11  Score=92.02  Aligned_cols=100  Identities=10%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             hhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccC-------CCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHH
Q psy10891         15 YYKDAHGCIIMFDLTNQ----NSFKNTLKWKKDVDLKCTLS-------DGSPIPCMLLANKCDLPHRQVDINDIECFYKE   83 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~-------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~   83 (142)
                      ++.++|++|+|+|+++.    ..+.++..|..++..+....       .....|+|+|+||+|+.......+........
T Consensus       233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~  312 (500)
T PRK12296        233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA  312 (500)
T ss_pred             HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH
Confidence            45789999999999753    34555556665654322100       12468999999999986421112223333444


Q ss_pred             cCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         84 HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .+ .+++.+||+++.|+++++.+|...+....
T Consensus       313 ~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        313 RG-WPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             cC-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            55 46999999999999999999998886643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.29  E-value=2.5e-11  Score=97.35  Aligned_cols=101  Identities=19%  Similarity=0.086  Sum_probs=71.3

Q ss_pred             CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||++.        +...+..++..+|+++||+|.++..+..+ ..|...+.       ..++|+|+|+||+|+.... 
T Consensus       329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr-------~~~~pvIlV~NK~D~~~~~-  399 (712)
T PRK09518        329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLR-------RAGKPVVLAVNKIDDQASE-  399 (712)
T ss_pred             eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH-------hcCCCEEEEEECcccccch-
Confidence            8999763        44556678899999999999987533222 24555553       1479999999999985421 


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                        .....+ ...++...+++||++|.|+.++|++|+..+..
T Consensus       400 --~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        400 --YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             --hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence              111222 22344346789999999999999999988754

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.29  E-value=3.5e-11  Score=94.42  Aligned_cols=100  Identities=20%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--C-CCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--R-QVD-   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~-~~~-   73 (142)
                      ||||+++|..++...+..+|++++|+|+++   +.++..+..    +.       ..++|+++++||+|+..  . ... 
T Consensus        77 DTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-------~~~vpiIvviNK~D~~~~~~~~~~~  145 (586)
T PRK04004         77 DTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-------RRKTPFVVAANKIDRIPGWKSTEDA  145 (586)
T ss_pred             ECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-------HcCCCEEEEEECcCCchhhhhhcCc
Confidence            899999999999999999999999999997   555554432    21       14789999999999852  1 000 


Q ss_pred             -------------HH-------HHHHHHHHc--------------CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         74 -------------IN-------DIECFYKEH--------------NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        74 -------------~~-------~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                                   ..       .+.......              +..+++.+||.+|.|+.+++..+...+
T Consensus       146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                         00       000111222              235689999999999999998886533

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=2.2e-11  Score=91.54  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |||||-+|.--....+.-+.++++|+|++....-+.+.+.+..+.        .+..+|.|.||+|+... .......++
T Consensus        82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle--------~~LeIiPViNKIDLP~A-dpervk~eI  152 (603)
T COG0481          82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPAA-DPERVKQEI  152 (603)
T ss_pred             CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH--------cCcEEEEeeecccCCCC-CHHHHHHHH
Confidence            899999999888888889999999999998877777778888886        57899999999999752 122333344


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN  122 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~  122 (142)
                      ..-.|+.  ..+.+||++|.||+++++.|+..+...++..+.|.
T Consensus       153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pL  196 (603)
T COG0481         153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPL  196 (603)
T ss_pred             HHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcc
Confidence            4455642  37889999999999999999999977765544443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.28  E-value=2.5e-11  Score=95.31  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=76.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC--CHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV--DINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~   78 (142)
                      ||||+.+|...+..+++.+|++++|+|+.+.. ......|+..+..       .++|+|+|+||+|+.....  ...++.
T Consensus        70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-------~~ip~IVviNKiD~~~a~~~~v~~ei~  141 (594)
T TIGR01394        70 DTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPSARPDEVVDEVF  141 (594)
T ss_pred             ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-------CCCCEEEEEECCCCCCcCHHHHHHHHH
Confidence            89999999999999999999999999998743 2333455555531       4689999999999854111  122333


Q ss_pred             HHHHHcC------CceEEEeeccCCC----------CHHHHHHHHHHHHHHH
Q psy10891         79 CFYKEHN------FIGWTETSTKEGL----------MVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        79 ~~~~~~~------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~  114 (142)
                      .++...+      ..|++.+||++|.          |+..+|+.|+..+...
T Consensus       142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       142 DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            3332211      1468999999995          7999999988877543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0072|consensus

Probab=99.28  E-value=1.8e-11  Score=78.52  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |..||-..+..|+.||.+.|++|+|+|.+|..........+-.+.   +..+..+.-+++++||.|...+....+....+
T Consensus        68 dLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL---~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L  144 (182)
T KOG0072|consen   68 DLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSML---QEEELQHAKLLVFANKQDYSGALTRSEVLKML  144 (182)
T ss_pred             EccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHh---ccHhhcCceEEEEeccccchhhhhHHHHHHHh
Confidence            567888888999999999999999999998764443333222222   34444678899999999975422111211111


Q ss_pred             ----HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 ----YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ----~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                          .+.. ...++.+||.+|+|++..++|+.+.+..+
T Consensus       145 ~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  145 GLQKLKDR-IWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ChHHHhhh-eeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence                1122 24588999999999999999999887543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.28  E-value=9.9e-12  Score=78.27  Aligned_cols=61  Identities=31%  Similarity=0.547  Sum_probs=50.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      |++|++.+...+..++.++|++++|||++++.|+..+.   .|+..+....     .++|+++|+||.|
T Consensus        56 d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-----~~~piilv~nK~D  119 (119)
T PF08477_consen   56 DFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-----KNIPIILVGNKSD  119 (119)
T ss_dssp             EESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-----SCSEEEEEEE-TC
T ss_pred             ecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-----CCCCEEEEEeccC
Confidence            68899999998888899999999999999999998875   4566664332     5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.27  E-value=2.7e-11  Score=83.79  Aligned_cols=96  Identities=18%  Similarity=0.081  Sum_probs=63.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC-----CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-----VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~   75 (142)
                      ||||+++|...+...++.+|++++|+|++++..-.....| ..+. ..     ...++|+|+||+|+....     ....
T Consensus        83 DTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~-~~~~-~~-----~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          83 DTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHS-YILS-LL-----GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             ECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHH-HHHH-Hc-----CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8999999987777788999999999999876432222222 1121 11     123578899999986411     0122


Q ss_pred             HHHHHHHHcCC--ceEEEeeccCCCCHHHH
Q psy10891         76 DIECFYKEHNF--IGWTETSTKEGLMVNDS  103 (142)
Q Consensus        76 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l  103 (142)
                      .+..++..+++  .+++.+||+++.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            34445556663  34899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.26  E-value=7.5e-11  Score=80.33  Aligned_cols=102  Identities=12%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             CCCc----------chhhhhhhHhhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEG----------QERFTWMTRVYYKDA---HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||          +++|..+...++..+   +++++|+|.+++.+.... .+...+.       ..++|+++++||+|+
T Consensus        76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-------~~~~~~iiv~nK~Dl  147 (196)
T PRK00454         76 DLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-------EYGIPVLIVLTKADK  147 (196)
T ss_pred             CCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-------HcCCcEEEEEECccc
Confidence            8999          467777777777655   678889998876444331 1112221       136899999999998


Q ss_pred             CCC-C--CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         68 PHR-Q--VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        68 ~~~-~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ... .  ...+.+........ .+++++||+++.|+.++++.|...+
T Consensus       148 ~~~~~~~~~~~~i~~~l~~~~-~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        148 LKKGERKKQLKKVRKALKFGD-DEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             CCHHHHHHHHHHHHHHHHhcC-CceEEEEcCCCCCHHHHHHHHHHHh
Confidence            651 1  11222333344333 4689999999999999999987665

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.26  E-value=6e-11  Score=81.79  Aligned_cols=68  Identities=18%  Similarity=0.227  Sum_probs=53.8

Q ss_pred             CCCcchhhhhhhHhhhccC-CEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDA-HGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~a-d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+++|..++..+++++ +++|||+|+.+. .++.....|+..+..... ....++|+++++||+|+..
T Consensus        54 D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~-~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          54 DVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLE-KVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHh-hccCCCCEEEEecchhhcc
Confidence            8999999999999999999 999999999987 677776666655432211 1225899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK10218 GTP-binding protein; Provisional

Probab=99.26  E-value=5.7e-11  Score=93.39  Aligned_cols=106  Identities=12%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC--CCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--QVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~   78 (142)
                      ||||+.+|...+..+++.+|++++|+|+.+.........|.....        .++|+|+++||+|+...  ....+++.
T Consensus        74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~  145 (607)
T PRK10218         74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVF  145 (607)
T ss_pred             ECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHH
Confidence            899999999999999999999999999987644433333332221        47899999999998641  11122333


Q ss_pred             HHHHHcC------CceEEEeeccCCC----------CHHHHHHHHHHHHHHH
Q psy10891         79 CFYKEHN------FIGWTETSTKEGL----------MVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        79 ~~~~~~~------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~  114 (142)
                      .++...+      -.|++.+||.+|.          ++..+++.|+..+...
T Consensus       146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            3332211      1468999999998          5788888777776443

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.26  E-value=1.9e-11  Score=85.20  Aligned_cols=94  Identities=12%  Similarity=0.034  Sum_probs=62.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-------SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~   73 (142)
                      ||||+.+|...+...+..+|++++|+|+++..       .......|. ... ..     ...|+|+++||+|+......
T Consensus        83 DtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~-~~-----~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          83 DAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LAR-TL-----GVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             ECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHH-Hc-----CCCeEEEEEEcccccccccc
Confidence            89999998877777788999999999998741       112222222 111 11     23689999999998631111


Q ss_pred             -------HHHHHHHHHHcCC----ceEEEeeccCCCCHH
Q psy10891         74 -------INDIECFYKEHNF----IGWTETSTKEGLMVN  101 (142)
Q Consensus        74 -------~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  101 (142)
                             .+.+..++...++    .+++.+||++|.|++
T Consensus       156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                   1223333455543    469999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.26  E-value=8.6e-12  Score=82.30  Aligned_cols=95  Identities=17%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             CCCcchhhh------hhhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFT------WMTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~------~~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||.-.+.      .++..|+  ...|++++|+|+++......+-.++.+          -++|+|+|.||+|... +.
T Consensus        53 DlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e----------~g~P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   53 DLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLE----------LGIPVVVVLNKMDEAERKG  122 (156)
T ss_dssp             E----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHH----------TTSSEEEEEETHHHHHHTT
T ss_pred             ECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHH----------cCCCEEEEEeCHHHHHHcC
Confidence            788842222      2344454  689999999999875433222222222          3799999999999865 22


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  107 (142)
                      .. -+...+.+.++ .|++.+||+++.|++++++.|
T Consensus       123 ~~-id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  123 IE-IDAEKLSERLG-VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EE-E-HHHHHHHHT-S-EEEEBTTTTBTHHHHHHHH
T ss_pred             CE-ECHHHHHHHhC-CCEEEEEeCCCcCHHHHHhhC
Confidence            22 23556677788 679999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.25  E-value=1.7e-11  Score=93.09  Aligned_cols=98  Identities=12%  Similarity=0.037  Sum_probs=65.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC----CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN--QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ----VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~----~~   73 (142)
                      ||||+++|...+...+..+|++++|+|+++  ...-.. ..++..+. ..     ...|+++++||+|+.. ..    ..
T Consensus        90 DtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~-~~~~~~~~-~~-----~~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         90 DCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT-REHVFLAR-TL-----GINQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             ECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch-HHHHHHHH-Hc-----CCCeEEEEEEccccccccHHHHHHH
Confidence            899999998766666789999999999987  322111 12222221 11     1246999999999864 11    12


Q ss_pred             HHHHHHHHHHcCC----ceEEEeeccCCCCHHHHHH
Q psy10891         74 INDIECFYKEHNF----IGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        74 ~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~~  105 (142)
                      .+++..++...++    .+++++||++|.|+.++..
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            2345556666664    4689999999999987543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.25  E-value=6.5e-11  Score=88.14  Aligned_cols=96  Identities=16%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH----
Q psy10891          5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF----   80 (142)
Q Consensus         5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----   80 (142)
                      .++|..+...++.+++++++|+|+.+..     ..|..++.++.     .+.|+++|+||+|+..+....+.+..|    
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~  119 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR  119 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence            5688889999999999999999997654     23555555433     468999999999997644444454443    


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ++..++.  .++.+||+++.|+++++..+...
T Consensus       120 ~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       120 AKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            5566642  48899999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.24  E-value=1.2e-10  Score=95.83  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC-C--
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV-D--   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~-~--   73 (142)
                      ||||++.|..++...+..+|++++|+|+++   +.++..+.    .+..       .++|+++|+||+|+.. ... .  
T Consensus       532 DTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~-------~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        532 DTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ-------YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             ECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH-------cCCCEEEEEECCCCccccccccch
Confidence            899999999998888899999999999987   34444332    2221       3689999999999853 110 0  


Q ss_pred             ----------HHHHHHH----------HHHc--------------CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         74 ----------INDIECF----------YKEH--------------NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        74 ----------~~~~~~~----------~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                                ......+          +...              +..+++.|||++|+|+++|+..|....
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence                      0001111          1112              235789999999999999998776543

>COG1159 Era GTPase [General function prediction only]

Probab=99.23  E-value=8.5e-11  Score=83.88  Aligned_cols=105  Identities=18%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             CCCcc--------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQ--------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~--------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||-        +.........+.++|+++||+|++++..-.+ +..++.+.+       .+.|+|++.||+|......
T Consensus        60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~~  131 (298)
T COG1159          60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPKT  131 (298)
T ss_pred             eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcHH
Confidence            89992        2223334666789999999999998532222 233455531       3679999999999876222


Q ss_pred             -CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         73 -DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        73 -~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       ..+....+.....+..++++||++|.|++.+.+.+..++.+
T Consensus       132 ~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         132 VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence             24555555566677789999999999999999998887754

>PRK12736 elongation factor Tu; Reviewed

Probab=99.22  E-value=8.7e-11  Score=88.46  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=68.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CCC---CHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQV---DIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~~---~~~   75 (142)
                      ||||+++|...+-.....+|++++|+|++....-...+ .+..+..       .++| +|+++||+|+.+ ...   ..+
T Consensus        81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~-------~g~~~~IvviNK~D~~~~~~~~~~i~~  152 (394)
T PRK12736         81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ-------VGVPYLVVFLNKVDLVDDEELLELVEM  152 (394)
T ss_pred             ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-------cCCCEEEEEEEecCCcchHHHHHHHHH
Confidence            89999999887777778999999999998753322222 2222321       3678 678999999864 111   123


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCC--------CHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGL--------MVNDSMKFLLDVL  111 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~--------~i~~l~~~l~~~~  111 (142)
                      ++..++...++    .+++.+||+++.        ++..+++.+...+
T Consensus       153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            45555555554    479999999983        4566666665554

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.21  E-value=1.1e-10  Score=89.07  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC---HHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD---IND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~   76 (142)
                      ||||+++|...+-..+..+|++++|+|++.+ ......+.+. .+. ..     .-.++|+|.||+|+.+....   .++
T Consensus       123 DtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~-~l-----gi~~iIVvlNKiDlv~~~~~~~~~~e  195 (460)
T PTZ00327        123 DCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVE-IM-----KLKHIIILQNKIDLVKEAQAQDQYEE  195 (460)
T ss_pred             eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHH-Hc-----CCCcEEEEEecccccCHHHHHHHHHH
Confidence            8999999988877788899999999999874 2222222222 211 01     12368999999998641111   122


Q ss_pred             HHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         77 IECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        77 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +..+....  ...+++.+||++|.|++.|++.|...+.
T Consensus       196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            22222221  2357999999999999999988886553

>cd01859 MJ1464 MJ1464

Probab=99.20  E-value=1.3e-10  Score=76.79  Aligned_cols=95  Identities=16%  Similarity=0.164  Sum_probs=65.2

Q ss_pred             hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891          8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI   87 (142)
Q Consensus         8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~   87 (142)
                      |+.+++.+.+++|++++|+|++++.+... ..+...+.       ..+.|+++|+||+|+..... ......+....+ .
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~-------~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~-~   71 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL-------ELGKKLLIVLNKADLVPKEV-LEKWKSIKESEG-I   71 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH-------hCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCC-C
Confidence            45677888899999999999988654332 12222221       13689999999999854111 111112333344 4


Q ss_pred             eEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         88 GWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        88 ~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.+||+++.|+++++..+...+.
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHh
Confidence            6899999999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.19  E-value=2.5e-11  Score=92.61  Aligned_cols=94  Identities=16%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH-------HHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK-------NTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~   72 (142)
                      |||||++|...+...+..+|++|+|+|+++. +|+       .....+....       ..++| +|+++||+|+.....
T Consensus        91 DtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~-------~~gi~~iIV~vNKmD~~~~~~  162 (447)
T PLN00043         91 DAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF-------TLGVKQMICCCNKMDATTPKY  162 (447)
T ss_pred             ECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH-------HcCCCcEEEEEEcccCCchhh
Confidence            8999999999999999999999999999873 221       1222221111       13675 788999999752111


Q ss_pred             -------CHHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891         73 -------DINDIECFYKEHNF----IGWTETSTKEGLMVND  102 (142)
Q Consensus        73 -------~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  102 (142)
                             ..+++..+++..++    .+++++||.+|.|+.+
T Consensus       163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                   24456666777664    4699999999999853

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.19  E-value=1.1e-10  Score=78.70  Aligned_cols=93  Identities=13%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CCCc----------chhhhhhhHhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEG----------QERFTWMTRVYYKD---AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||          .+.|..+...|++.   ++++++|+|.+.+.+..... ++..+.       ..++|+++|+||+|+
T Consensus        70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~-------~~~~pviiv~nK~D~  141 (179)
T TIGR03598        70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR-------ERGIPVLIVLTKADK  141 (179)
T ss_pred             eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECccc
Confidence            8999          35566666777764   57999999998865555532 223332       136899999999998


Q ss_pred             CCC---CCCHHHHHHHHHHcCC-ceEEEeeccCCCCHH
Q psy10891         68 PHR---QVDINDIECFYKEHNF-IGWTETSTKEGLMVN  101 (142)
Q Consensus        68 ~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  101 (142)
                      ...   ....+.+...+...+. .+++++||++|+|++
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       142 LKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            641   1123344444544432 259999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.16  E-value=1.8e-10  Score=86.71  Aligned_cols=90  Identities=14%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCC-CCC---CHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPH-RQV---DIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~-~~~---~~~   75 (142)
                      ||||+++|...+-.....+|++++|+|++........+.| ..+..       .++|.+ +++||+|+.+ ...   ..+
T Consensus        81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-------~gi~~iIvvvNK~Dl~~~~~~~~~~~~  152 (394)
T TIGR00485        81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEM  152 (394)
T ss_pred             ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCEEEEEEEecccCCHHHHHHHHHH
Confidence            8999999987776667789999999999874333322222 22221       367755 6899999865 111   123


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCC
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGL   98 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~   98 (142)
                      ++..+++.+++    .+++++||.++.
T Consensus       153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       153 EVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHhcCCCccCccEEECcccccc
Confidence            46666776664    579999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.16  E-value=5.4e-10  Score=73.63  Aligned_cols=100  Identities=15%  Similarity=0.235  Sum_probs=65.9

Q ss_pred             CCCc----------chhhhhhhHhhhcc---CCEEEEEEeCCChhhH--HHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891          1 MTEG----------QERFTWMTRVYYKD---AHGCIIMFDLTNQNSF--KNTLKWKKDVDLKCTLSDGSPIPCMLLANKC   65 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~~~~~---ad~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~   65 (142)
                      ||||          ++.+..++..|+..   ++++++++|.+...+.  ..+..|+...          +.|+++|+||+
T Consensus        51 D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~  120 (170)
T cd01876          51 DLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKA  120 (170)
T ss_pred             cCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEch
Confidence            7887          45566666667653   5788999998865322  2233444432          58999999999


Q ss_pred             CCCCCC---CCHHHHHHHHH-HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         66 DLPHRQ---VDINDIECFYK-EHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        66 D~~~~~---~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      |+....   ..........+ .....+++++|++++.++.++++.|.++
T Consensus       121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         121 DKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            985411   11122222222 2333568999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.15  E-value=2.5e-10  Score=84.60  Aligned_cols=94  Identities=14%  Similarity=0.115  Sum_probs=67.4

Q ss_pred             hhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891          8 FTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF   86 (142)
Q Consensus         8 ~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~   86 (142)
                      -+.+.+.+++++|.+++|+|+.++. +...+..|+....       ..++|+|||+||+|+..... .......+..+++
T Consensus        79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-------~~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~  150 (352)
T PRK12289         79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE-------STGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGY  150 (352)
T ss_pred             ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEEchhcCChHH-HHHHHHHHHhcCC
Confidence            3345566789999999999998765 4555677776552       15799999999999964110 1122223346674


Q ss_pred             ceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         87 IGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        87 ~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                       +++.+||+++.|+++|+..+...
T Consensus       151 -~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        151 -QPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             -eEEEEEcCCCCCHHHHhhhhccc
Confidence             68999999999999999888643

>PRK00098 GTPase RsgA; Reviewed

Probab=99.15  E-value=1.1e-10  Score=84.89  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=62.3

Q ss_pred             hccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST   94 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa   94 (142)
                      .+++|++++|+|+.++.++.. +..|+..+..       .++|+++|+||+|+.................+ .+++.+||
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g-~~v~~vSA  149 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDLEEARELLALYRAIG-YDVLELSA  149 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCC-CeEEEEeC
Confidence            489999999999988765443 5678766631       47899999999998531111222334455566 46999999


Q ss_pred             cCCCCHHHHHHHHH
Q psy10891         95 KEGLMVNDSMKFLL  108 (142)
Q Consensus        95 ~~~~~i~~l~~~l~  108 (142)
                      +++.|+++++..+.
T Consensus       150 ~~g~gi~~L~~~l~  163 (298)
T PRK00098        150 KEGEGLDELKPLLA  163 (298)
T ss_pred             CCCccHHHHHhhcc
Confidence            99999999998874

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.15  E-value=4.7e-10  Score=90.45  Aligned_cols=100  Identities=17%  Similarity=0.079  Sum_probs=73.4

Q ss_pred             CCCcchhhhhh----------hHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWM----------TRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~----------~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+..+...          ...++  ..+|++++|+|.++.+...   .|..++..       .++|+++|+||+|+.
T Consensus        56 DtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e-------~giPvIvVlNK~Dl~  125 (772)
T PRK09554         56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE-------LGIPCIVALNMLDIA  125 (772)
T ss_pred             ECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHH-------cCCCEEEEEEchhhh
Confidence            89999877532          22343  4899999999998854322   24344431       369999999999986


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         69 HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++.......+.+.+.++ .|++.+|+.++.|++++++.+....
T Consensus       126 ~~~~i~id~~~L~~~LG-~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        126 EKQNIRIDIDALSARLG-CPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             hccCcHHHHHHHHHHhC-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence            52223455677788888 5799999999999999999887764

>cd04167 Snu114p Snu114p subfamily

Probab=99.15  E-value=2.1e-10  Score=79.56  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=48.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+++|...+..++..+|++++|+|+.+..++.. ..|+....       ..++|+++|+||+|+.
T Consensus        77 DtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~-------~~~~p~iiviNK~D~~  136 (213)
T cd04167          77 DTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI-------LEGLPIVLVINKIDRL  136 (213)
T ss_pred             ECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH-------HcCCCEEEEEECcccC
Confidence            899999999899999999999999999988766543 34444432       1358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.14  E-value=5.8e-10  Score=83.66  Aligned_cols=98  Identities=17%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             CCCcchhhh---------hhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFT---------WMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~---------~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||+|.+.-.         ......+..||++|||+|.....+-.+  +..|+..          .++|+|||+||+|...
T Consensus        57 DTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~----------~~kpviLvvNK~D~~~  126 (444)
T COG1160          57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR----------SKKPVILVVNKIDNLK  126 (444)
T ss_pred             ECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh----------cCCCEEEEEEcccCch
Confidence            788855322         234666789999999999988655444  2233331          4799999999999742


Q ss_pred             CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                          .+....-+..+|+-.++.+||..|.|+.+|++.++..+.
T Consensus       127 ----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         127 ----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             ----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence                233333455677777999999999999999999999983

>PRK12735 elongation factor Tu; Reviewed

Probab=99.14  E-value=3.7e-10  Score=85.12  Aligned_cols=103  Identities=12%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCC-C---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHR-Q---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~-~---~~~~   75 (142)
                      ||||+++|...+...+..+|++++|+|+........ ...+..+.       ..++|.+ +++||+|+.+. .   ....
T Consensus        81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~-------~~gi~~iivvvNK~Dl~~~~~~~~~~~~  152 (396)
T PRK12735         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR-------QVGVPYIVVFLNKCDMVDDEELLELVEM  152 (396)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH-------HcCCCeEEEEEEecCCcchHHHHHHHHH
Confidence            899999998877777889999999999987533322 22333332       1367865 57999998641 1   1122


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCC----------CHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGL----------MVNDSMKFLLDVL  111 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~----------~i~~l~~~l~~~~  111 (142)
                      ++..++..+++    .+++++||.++.          ++..|++.|...+
T Consensus       153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            45555666553    568999999984          5666666666543

>PRK09866 hypothetical protein; Provisional

Probab=99.13  E-value=1.2e-09  Score=85.56  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             CCCcchh-----hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCH
Q psy10891          1 MTEGQER-----FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDI   74 (142)
Q Consensus         1 Dt~G~e~-----~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~   74 (142)
                      ||||...     ++..+...+.++|+|+||+|++...+..+ ...+..+....     ...|+++|+||+|+.+ .....
T Consensus       236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-----K~~PVILVVNKIDl~dreeddk  309 (741)
T PRK09866        236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-----QSVPLYVLVNKFDQQDRNSDDA  309 (741)
T ss_pred             ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-----CCCCEEEEEEcccCCCcccchH
Confidence            8999532     33345557899999999999987655444 23344443111     2369999999999864 22224


Q ss_pred             HHHHHHHH----Hc--CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         75 NDIECFYK----EH--NFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        75 ~~~~~~~~----~~--~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +.+..+..    ..  .+..++.+||+.|.|++++++.|..
T Consensus       310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            44444432    11  2345899999999999999988876

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.13  E-value=6.2e-10  Score=83.48  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             CCCcchhhhhh-----------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWM-----------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~-----------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||..+-...           .......+|+|++|+|.+.+.+-++.. ....+.       ..+.++++|.||||+.+
T Consensus       232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~-------~~g~~~vIvvNKWDl~~  303 (444)
T COG1160         232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIE-------EAGRGIVIVVNKWDLVE  303 (444)
T ss_pred             ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH-------HcCCCeEEEEEccccCC
Confidence            78886554433           234567899999999999987766643 334442       25789999999999876


Q ss_pred             C-CCCHH----HHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 R-QVDIN----DIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ~-~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      . ....+    .+.......++.|.+++||+++.+++.+|..+.......
T Consensus       304 ~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         304 EDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             chhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            2 22222    333344455667899999999999999999887665543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.11  E-value=8.6e-10  Score=77.77  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.+|...+..+++.+|++++|+|..+..+... ..|+..+..       .++|+++++||+|+.
T Consensus        70 DTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~-~~~~~~~~~-------~~~P~iivvNK~D~~  129 (237)
T cd04168          70 DTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQT-RILWRLLRK-------LNIPTIIFVNKIDRA  129 (237)
T ss_pred             eCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccc
Confidence            899999999999999999999999999998755433 344444431       478999999999984

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.11  E-value=3.1e-10  Score=82.15  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=65.4

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee
Q psy10891         15 YYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS   93 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   93 (142)
                      .++++|++++|+|++++. ++..++.|+..+..       .++|+++|+||+|+.... .......+....+ .+++.+|
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g-~~v~~vS  145 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-------AGIEPVIVLTKADLLDDE-EEELELVEALALG-YPVLAVS  145 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCChH-HHHHHHHHHHhCC-CeEEEEE
Confidence            378999999999999887 88888889877641       478999999999986421 1112222334456 5799999


Q ss_pred             ccCCCCHHHHHHHHHH
Q psy10891         94 TKEGLMVNDSMKFLLD  109 (142)
Q Consensus        94 a~~~~~i~~l~~~l~~  109 (142)
                      |+++.|+++++..+..
T Consensus       146 A~~g~gi~~L~~~L~~  161 (287)
T cd01854         146 AKTGEGLDELREYLKG  161 (287)
T ss_pred             CCCCccHHHHHhhhcc
Confidence            9999999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.10  E-value=6.5e-10  Score=77.64  Aligned_cols=60  Identities=13%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+++|......+++.+|++++|+|+....+......|.....        .++|+++|+||+|+.
T Consensus        79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--------~~~p~ilviNKiD~~  138 (222)
T cd01885          79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--------ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--------cCCCEEEEEECCCcc
Confidence            899999999999999999999999999998766554333322221        468999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1145|consensus

Probab=99.09  E-value=2.9e-09  Score=81.54  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=75.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~   77 (142)
                      ||||+..|..|+..-..-+|++++|+..+|.   .+.+.+..    .       ...++|+|+..||+|...  -..+..
T Consensus       207 DTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh----A-------k~A~VpiVvAinKiDkp~--a~pekv  273 (683)
T KOG1145|consen  207 DTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH----A-------KSANVPIVVAINKIDKPG--ANPEKV  273 (683)
T ss_pred             cCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH----H-------HhcCCCEEEEEeccCCCC--CCHHHH
Confidence            8999999999999888899999999999985   34333221    1       226899999999999865  222222


Q ss_pred             HHH-------HHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         78 ECF-------YKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        78 ~~~-------~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ..-       ++.+|. .+.+.+||++|.|++.|-+.+..++---.
T Consensus       274 ~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~md  319 (683)
T KOG1145|consen  274 KRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMD  319 (683)
T ss_pred             HHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhh
Confidence            222       234432 46899999999999999988876665443

>CHL00071 tufA elongation factor Tu

Probab=99.08  E-value=1e-09  Score=83.02  Aligned_cols=91  Identities=12%  Similarity=0.091  Sum_probs=63.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~   75 (142)
                      ||||+.+|...+...+..+|++++|+|+.....-... ..+..+.       ..++| +|++.||+|+.+ ..   ....
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~-------~~g~~~iIvvvNK~D~~~~~~~~~~~~~  152 (409)
T CHL00071         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAK-------QVGVPNIVVFLNKEDQVDDEELLELVEL  152 (409)
T ss_pred             ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHH-------HcCCCEEEEEEEccCCCCHHHHHHHHHH
Confidence            8999999988877788899999999999875433322 2222232       13678 778999999865 11   1223


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCCC
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGLM   99 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~~   99 (142)
                      ++..+++..++    .|++.+||.+|.+
T Consensus       153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        153 EVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            45555666553    5799999999864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.07  E-value=1.1e-09  Score=82.81  Aligned_cols=95  Identities=19%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC-C---CHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ-V---DIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~-~---~~~   75 (142)
                      ||||+++|...+...+..+|++++|+|+.....-...+.|.....  .     ...++|+++||+|+.. .. .   ..+
T Consensus        86 DtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~--~-----~~~~iivviNK~D~~~~~~~~~~~i~~  158 (406)
T TIGR02034        86 DTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL--L-----GIRHVVLAVNKMDLVDYDEEVFENIKK  158 (406)
T ss_pred             eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH--c-----CCCcEEEEEEecccccchHHHHHHHHH
Confidence            899999998777778899999999999987643333223321111  0     1235889999999864 11 0   112


Q ss_pred             HHHHHHHHcCC--ceEEEeeccCCCCHHH
Q psy10891         76 DIECFYKEHNF--IGWTETSTKEGLMVND  102 (142)
Q Consensus        76 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  102 (142)
                      .+..+.+..++  .+++.+||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            23333444443  3699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK12288 GTPase RsgA; Reviewed

Probab=99.06  E-value=9.4e-10  Score=81.45  Aligned_cols=86  Identities=14%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC--CHHHHHHHHHHcCCceEEEee
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV--DINDIECFYKEHNFIGWTETS   93 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S   93 (142)
                      ..++|.+++|++.+...++..++.|+....       ..++|+++|+||+|+.....  ............+ .+++++|
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-------~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g-~~v~~vS  189 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-------TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIG-YRVLMVS  189 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-------hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCC-CeEEEEe
Confidence            467999999999988889999999987653       24689999999999965210  1112222334556 5699999


Q ss_pred             ccCCCCHHHHHHHHHH
Q psy10891         94 TKEGLMVNDSMKFLLD  109 (142)
Q Consensus        94 a~~~~~i~~l~~~l~~  109 (142)
                      |+++.|+++++..|..
T Consensus       190 A~tg~GideL~~~L~~  205 (347)
T PRK12288        190 SHTGEGLEELEAALTG  205 (347)
T ss_pred             CCCCcCHHHHHHHHhh
Confidence            9999999999998864

>PRK13351 elongation factor G; Reviewed

Probab=99.02  E-value=3.9e-09  Score=84.61  Aligned_cols=61  Identities=23%  Similarity=0.332  Sum_probs=50.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+..+++.+|++++|+|+++..+......|. .+.       ..++|+++++||+|+..
T Consensus        79 DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~-------~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         79 DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QAD-------RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH-------hcCCCEEEEEECCCCCC
Confidence            89999999999999999999999999999877666555553 332       14789999999999854

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.02  E-value=5.4e-09  Score=73.55  Aligned_cols=50  Identities=26%  Similarity=0.440  Sum_probs=38.7

Q ss_pred             CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .+|+++|+||+|+..    .++...++..   .+++++||+++.|++++|..+.+.+
T Consensus       176 y~p~iiV~NK~Dl~~----~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         176 YIPCLYVYNKIDLIS----IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             EeeEEEEEECccCCC----HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            369999999999853    4444444443   3488999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.01  E-value=2.7e-09  Score=80.47  Aligned_cols=90  Identities=12%  Similarity=0.158  Sum_probs=60.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCC-CC---CHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHR-QV---DIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~-~~---~~~   75 (142)
                      ||||+.+|...+...+..+|++++|+|+..+..-.. ..++..+..       .++|++ +++||+|+.+. ..   ...
T Consensus        81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~-------~g~p~iiVvvNK~D~~~~~~~~~~~~~  152 (396)
T PRK00049         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEM  152 (396)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH-------cCCCEEEEEEeecCCcchHHHHHHHHH
Confidence            899999998887778899999999999987543332 233333321       368875 58999998641 11   122


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCC
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGL   98 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~   98 (142)
                      ++..+....++    .|++.+||.++.
T Consensus       153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        153 EVRELLSKYDFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             HHHHHHHhcCCCccCCcEEEeeccccc
Confidence            34444554443    578999999875

>KOG0074|consensus

Probab=99.00  E-value=5.7e-10  Score=71.57  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=76.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |.+||...+..|.-||.+.|++|+|+|.+|..-|+.+..-+.++.   .......+|+++.+||.|+.. ....+.+..-
T Consensus        68 DiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELl---eeeKl~~vpvlIfankQdllt-aa~~eeia~k  143 (185)
T KOG0074|consen   68 DIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELL---EEEKLAEVPVLIFANKQDLLT-AAKVEEIALK  143 (185)
T ss_pred             ecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHh---hhhhhhccceeehhhhhHHHh-hcchHHHHHh
Confidence            788999999999999999999999999999888887665555554   333456899999999999875 1222222222


Q ss_pred             HHHcCC----ceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKEHNF----IGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +.-.++    -.+-+|||.+++|+.+-.+++..
T Consensus       144 lnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  144 LNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             cchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            111111    23668999999999888887764

>PRK13768 GTPase; Provisional

Probab=98.99  E-value=8e-09  Score=73.55  Aligned_cols=106  Identities=16%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             CCCcchhh---hhhhHhhhcc-----CCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQERF---TWMTRVYYKD-----AHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~~---~~~~~~~~~~-----ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||||+..+   +..+..+++.     ++++++|+|+....+..+.  ..|+......     ..++|+++|+||+|+...
T Consensus       103 d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768        103 DTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             eCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhHhhcCc
Confidence            89998774   3444444433     8999999999754333221  2333221111     147999999999998652


Q ss_pred             CCCHHHHHH----------------------------HHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         71 QVDINDIEC----------------------------FYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        71 ~~~~~~~~~----------------------------~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .. .+....                            ..+..+ ..+++.+|++++.|+++++++|.+.+.
T Consensus       178 ~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            11 111111                            112223 236899999999999999999988763

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.98  E-value=9e-09  Score=80.08  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=46.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+++|...+..+++.+|++|+|+|+++..... ...++....       ..++|+++++||+|+.
T Consensus        85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-------~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR-------LRDTPIFTFINKLDRD  144 (526)
T ss_pred             ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH-------hcCCCEEEEEECCccc
Confidence            89999999998888999999999999998753322 233333332       2479999999999974

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.97  E-value=1.9e-09  Score=82.96  Aligned_cols=97  Identities=18%  Similarity=0.034  Sum_probs=61.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC-CH---H
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV-DI---N   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~-~~---~   75 (142)
                      ||||+++|...+...+..+|++++|+|++....-...+.|.....  .     .-.|+|+++||+|+.. ... ..   .
T Consensus       113 DTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~--l-----g~~~iIvvvNKiD~~~~~~~~~~~i~~  185 (474)
T PRK05124        113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL--L-----GIKHLVVAVNKMDLVDYSEEVFERIRE  185 (474)
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH--h-----CCCceEEEEEeeccccchhHHHHHHHH
Confidence            899999998766666799999999999987533222222221110  0     1247899999999864 111 11   1


Q ss_pred             HHHHHHHHcC---CceEEEeeccCCCCHHHHH
Q psy10891         76 DIECFYKEHN---FIGWTETSTKEGLMVNDSM  104 (142)
Q Consensus        76 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~  104 (142)
                      .+..+....+   ..+++.+||++|.|+.++-
T Consensus       186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            2222233333   3569999999999997653

>cd01858 NGP_1 NGP-1

Probab=98.97  E-value=3.2e-09  Score=70.28  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST   94 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa   94 (142)
                      .+.++|++++|+|+.++..... ..+...+..     ...++|+|+|.||+|+.++.........+.+.+.+. .+.+||
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~-----~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~-~~~iSa   77 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK-----EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTI-AFHASI   77 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC-HHHHHHHHh-----ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEE-EEEeec
Confidence            4678999999999998743221 222233321     124589999999999864211112222222222212 467899


Q ss_pred             cCCCCHHHHHHHHHHHH
Q psy10891         95 KEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        95 ~~~~~i~~l~~~l~~~~  111 (142)
                      +.+.|++++++.+...+
T Consensus        78 ~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          78 NNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccccHHHHHHHHHHHH
Confidence            99999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.97  E-value=1.4e-08  Score=75.43  Aligned_cols=99  Identities=16%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891          6 ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN   85 (142)
Q Consensus         6 e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~   85 (142)
                      +.|.++.+.. ..||+++.|+|+++|.....+..-..-+.    .-....+|+|+|.||+|+.....   ... ......
T Consensus       260 ~AFksTLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~----el~~~~~p~i~v~NKiD~~~~~~---~~~-~~~~~~  330 (411)
T COG2262         260 EAFKSTLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLA----EIGADEIPIILVLNKIDLLEDEE---ILA-ELERGS  330 (411)
T ss_pred             HHHHHHHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHH----HcCCCCCCEEEEEecccccCchh---hhh-hhhhcC
Confidence            4455555543 47999999999999965555443333331    22445699999999999765221   111 122221


Q ss_pred             CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         86 FIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        86 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                       ...+.+||+++.|++.|+..|...+...
T Consensus       331 -~~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         331 -PNPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             -CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence             1488899999999999999999888754

>PRK12740 elongation factor G; Reviewed

Probab=98.96  E-value=8.6e-09  Score=82.45  Aligned_cols=61  Identities=16%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+..++..+|++++|+|++...+......|. .+.       ..++|+++|+||+|+..
T Consensus        66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~-------~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         66 DTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAE-------KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH-------HcCCCEEEEEECCCCCC
Confidence            89999999888889999999999999999876665544443 222       14789999999999753

>cd01856 YlqF YlqF

Probab=98.96  E-value=7.7e-09  Score=69.41  Aligned_cols=98  Identities=17%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             Cc-chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891          3 EG-QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY   81 (142)
Q Consensus         3 ~G-~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~   81 (142)
                      || +.+........+++||++++|+|++.+.+... ..+...+         .+.|+++|.||+|+..... ......+.
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~---------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~   71 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL---------GNKPRIIVLNKADLADPKK-TKKWLKYF   71 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh---------cCCCEEEEEehhhcCChHH-HHHHHHHH
Confidence            44 45566667778899999999999987654322 1233332         3579999999999854210 11111222


Q ss_pred             HHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         82 KEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        82 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +..+ ..++.+||+++.|++++...+...+.
T Consensus        72 ~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          72 ESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            3333 45789999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.95  E-value=3.8e-09  Score=80.71  Aligned_cols=94  Identities=12%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC---
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-------SFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH---   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~---   69 (142)
                      ||||+++|...+......+|++++|+|++...       .-...+.|....        ..++| +|++.||+|...   
T Consensus        91 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~--------~~gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         91 DAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF--------TLGVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             ECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH--------HcCCCeEEEEEEccccccchh
Confidence            89999999998888889999999999998642       011222332211        13676 679999999421   


Q ss_pred             ----CCCCHHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891         70 ----RQVDINDIECFYKEHNF----IGWTETSTKEGLMVND  102 (142)
Q Consensus        70 ----~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  102 (142)
                          ......++..++...++    .+++.+|+.+|.|+.+
T Consensus       163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                01123344444555554    5689999999999854

>PLN03127 Elongation factor Tu; Provisional

Probab=98.94  E-value=7.3e-09  Score=79.19  Aligned_cols=103  Identities=12%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCH----H
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDI----N   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~----~   75 (142)
                      ||||+++|...+......+|++++|+|++....-.. ...+..+.       ..++| +|++.||+|+.+.....    .
T Consensus       130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~-------~~gip~iIvviNKiDlv~~~~~~~~i~~  201 (447)
T PLN03127        130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR-------QVGVPSLVVFLNKVDVVDDEELLELVEM  201 (447)
T ss_pred             ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHH-------HcCCCeEEEEEEeeccCCHHHHHHHHHH
Confidence            899999998777667778999999999987543332 22222222       13688 57899999986411111    1


Q ss_pred             HHHHHHHHcCC----ceEEEeecc---CCCC-------HHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF----IGWTETSTK---EGLM-------VNDSMKFLLDVL  111 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~---~~~~-------i~~l~~~l~~~~  111 (142)
                      ++..+....++    .|++.+|+.   ++.+       +..|++.+...+
T Consensus       202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            23333333332    568888776   4444       556666665554

>PLN03126 Elongation factor Tu; Provisional

Probab=98.91  E-value=1.6e-08  Score=77.88  Aligned_cols=91  Identities=11%  Similarity=0.012  Sum_probs=62.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCC-C---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHR-Q---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~-~---~~~~   75 (142)
                      ||||+++|...+-..+..+|++++|+|+.+.......+ ++..+.       ..++| +|+++||+|+.+. .   ...+
T Consensus       150 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~-------~~gi~~iIvvvNK~Dl~~~~~~~~~i~~  221 (478)
T PLN03126        150 DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAK-------QVGVPNMVVFLNKQDQVDDEELLELVEL  221 (478)
T ss_pred             ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH-------HcCCCeEEEEEecccccCHHHHHHHHHH
Confidence            89999999888877788999999999998764433323 333332       13678 7889999998641 1   1122


Q ss_pred             HHHHHHHHcC----CceEEEeeccCCCC
Q psy10891         76 DIECFYKEHN----FIGWTETSTKEGLM   99 (142)
Q Consensus        76 ~~~~~~~~~~----~~~~~~~Sa~~~~~   99 (142)
                      ++..+.+..+    ..|++.+|+.++.+
T Consensus       222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        222 EVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHhcCCCcCcceEEEEEcccccc
Confidence            4445555543    25789999998853

>smart00275 G_alpha G protein alpha subunit

Probab=98.90  E-value=4.6e-09  Score=77.74  Aligned_cols=112  Identities=14%  Similarity=0.127  Sum_probs=76.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |++||..++..|..|+.+++++|||+|+++-          ..+......+..+.   +...-.++|++|++||.|+.. 
T Consensus       190 DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~---~~~~~~~~piil~~NK~D~~~~  266 (342)
T smart00275      190 DVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC---NSRWFANTSIILFLNKIDLFEE  266 (342)
T ss_pred             ecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH---cCccccCCcEEEEEecHHhHHH
Confidence            7899999999999999999999999999862          23444444444443   333346799999999999733 


Q ss_pred             --CC-------------CCHHHHHHH----HHHc------CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 --RQ-------------VDINDIECF----YKEH------NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 --~~-------------~~~~~~~~~----~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                        ..             ...+....+    +...      .......+||.+-.++..+|+.+...++.+.
T Consensus       267 Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      267 KIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence              00             111222222    1111      1122457889999999999999998888764

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.88  E-value=7.7e-09  Score=82.23  Aligned_cols=95  Identities=22%  Similarity=0.144  Sum_probs=62.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC-CC---HH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ-VD---IN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~-~~---~~   75 (142)
                      ||||+++|...+...+..+|++++|+|++....-...+.+. .+...      ...++|+++||+|+.+ .. ..   ..
T Consensus       110 DtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~------~~~~iivvvNK~D~~~~~~~~~~~i~~  182 (632)
T PRK05506        110 DTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL------GIRHVVLAVNKMDLVDYDQEVFDEIVA  182 (632)
T ss_pred             ECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh------CCCeEEEEEEecccccchhHHHHHHHH
Confidence            89999999877767788999999999998654322222222 11100      2357889999999863 11 11   12


Q ss_pred             HHHHHHHHcCC--ceEEEeeccCCCCHHH
Q psy10891         76 DIECFYKEHNF--IGWTETSTKEGLMVND  102 (142)
Q Consensus        76 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  102 (142)
                      .+..+.+..++  .+++.+||++|.|+.+
T Consensus       183 ~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        183 DYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            22333445554  3589999999999874

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.87  E-value=7.8e-09  Score=74.24  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+..+++.+|++++|+|+.+...-... .++..+.       ..++|+++++||+|+..
T Consensus        70 DTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~-------~~~~p~ivviNK~D~~~  130 (270)
T cd01886          70 DTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQAD-------RYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             ECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHH-------HcCCCEEEEEECCCCCC
Confidence            8999999999999999999999999999875433322 2333332       14689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.87  E-value=2.1e-08  Score=72.22  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCC
Q psy10891         10 WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNF   86 (142)
Q Consensus        10 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~   86 (142)
                      ......+..+|++++|+|+..+.+...  .++..+.        .+.|+|+|.||+|+.+.    .....|   .+..+ 
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l--------~~kp~IiVlNK~DL~~~----~~~~~~~~~~~~~~-   77 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR--------GNKPRLIVLNKADLADP----AVTKQWLKYFEEKG-   77 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH--------CCCCEEEEEEccccCCH----HHHHHHHHHHHHcC-
Confidence            345667889999999999988755433  1222221        36799999999998541    222222   23334 


Q ss_pred             ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         87 IGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        87 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .+++.+||+++.|+.+++..+...+.+.
T Consensus        78 ~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        78 IKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            4588999999999999999988877543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.87  E-value=2e-08  Score=66.34  Aligned_cols=84  Identities=11%  Similarity=-0.033  Sum_probs=55.4

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHH-HHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891         20 HGCIIMFDLTNQNSFKNTLKWKK-DVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGL   98 (142)
Q Consensus        20 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~   98 (142)
                      |++++|+|+.++.+...  .|+. ...      ...++|+|+|+||+|+.......+....+.... ..+++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~------~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLI------KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHH------hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCc
Confidence            78999999998865543  2333 111      124789999999999854110011111222222 3557899999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy10891         99 MVNDSMKFLLDVLM  112 (142)
Q Consensus        99 ~i~~l~~~l~~~~~  112 (142)
                      |+++++..+.....
T Consensus        72 gi~~L~~~i~~~~~   85 (155)
T cd01849          72 GIEKKESAFTKQTN   85 (155)
T ss_pred             ChhhHHHHHHHHhH
Confidence            99999999877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13796 GTPase YqeH; Provisional

Probab=98.86  E-value=3.8e-08  Score=73.55  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH----HH
Q psy10891          7 RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF----YK   82 (142)
Q Consensus         7 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~   82 (142)
                      .|..+....-...+++++|+|+.+..     ..|...+.+..     .+.|+++|+||+|+..+....+.+..|    ++
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k  127 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK  127 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHH
Confidence            45454444433344999999998753     23555554333     468999999999997644444444444    45


Q ss_pred             HcCCc--eEEEeeccCCCCHHHHHHHHHHH
Q psy10891         83 EHNFI--GWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        83 ~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ..++.  .++.+||+++.|+++++..+...
T Consensus       128 ~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        128 ELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            55642  47899999999999999998654

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.86  E-value=5.9e-08  Score=65.97  Aligned_cols=99  Identities=12%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             chhhhhhhHhhhc---cCCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH
Q psy10891          5 QERFTWMTRVYYK---DAHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC   79 (142)
Q Consensus         5 ~e~~~~~~~~~~~---~ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~   79 (142)
                      ++++..++..|+.   +..++++++|+..+..-.+.  -.|+..          .++|+++++||+|..........+..
T Consensus        90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~----------~~i~~~vv~tK~DKi~~~~~~k~l~~  159 (200)
T COG0218          90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE----------LGIPVIVVLTKADKLKKSERNKQLNK  159 (200)
T ss_pred             HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH----------cCCCeEEEEEccccCChhHHHHHHHH
Confidence            7888888898985   46788999999988665443  245444          38999999999998763333333344


Q ss_pred             HHHHcCC----ce-EEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNF----IG-WTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~----~~-~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .++..+.    .+ ++.+|+.++.|++++...|...+..
T Consensus       160 v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         160 VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            4443332    11 6778999999999999999887643

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.84  E-value=2e-08  Score=63.23  Aligned_cols=97  Identities=20%  Similarity=0.157  Sum_probs=71.9

Q ss_pred             CCCc----chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH
Q psy10891          1 MTEG----QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND   76 (142)
Q Consensus         1 Dt~G----~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~   76 (142)
                      ||||    +.++.+-.-....++|++++|-.++++.|--.     ..+.      .....|+|-|++|.|+.+ ....+.
T Consensus        43 DTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~------~~~~k~vIgvVTK~DLae-d~dI~~  110 (148)
T COG4917          43 DTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFL------DIGVKKVIGVVTKADLAE-DADISL  110 (148)
T ss_pred             CCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccc------cccccceEEEEecccccc-hHhHHH
Confidence            7888    44444444445679999999999998754221     1111      113567999999999975 345667


Q ss_pred             HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ..+|..+-|..++|.+|+.++.|++++++.|..
T Consensus       111 ~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         111 VKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            778888888888999999999999999988754

>cd00066 G-alpha G protein alpha subunit

Probab=98.83  E-value=7.4e-09  Score=75.98  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=76.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      |++||...+..|..|+.++++++||+|+++-          ..+......+..+.   +...-.++|++|++||.|+...
T Consensus       167 DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~---~~~~~~~~pill~~NK~D~f~~  243 (317)
T cd00066         167 DVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC---NSRWFANTSIILFLNKKDLFEE  243 (317)
T ss_pred             CCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH---hCccccCCCEEEEccChHHHHH
Confidence            8999999999999999999999999999863          33444334444443   2223368999999999996320


Q ss_pred             -----------------CCCHHHHHHHH----HH-c----CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         71 -----------------QVDINDIECFY----KE-H----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        71 -----------------~~~~~~~~~~~----~~-~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                                       .-..+....+.    .. .    ..+....++|.+..++..+|+.+...++...
T Consensus       244 ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         244 KIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             hhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence                             11122222221    11 1    1122456899999999999999999888764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.82  E-value=3e-08  Score=74.76  Aligned_cols=100  Identities=15%  Similarity=0.096  Sum_probs=68.8

Q ss_pred             CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||...-...        ....+.+||++++|+|.+.+.+-.+.. .+..+        ..+.|+++|.||.|+.....
T Consensus       271 DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~~~--------~~~~~~i~v~NK~DL~~~~~  341 (454)
T COG0486         271 DTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIELL--------PKKKPIIVVLNKADLVSKIE  341 (454)
T ss_pred             ecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHHhc--------ccCCCEEEEEechhcccccc
Confidence            89996643332        244568999999999999863333322 22222        25799999999999976221


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                          .... +...-.+++.+|++++.|++.|...|...+...
T Consensus       342 ----~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         342 ----LESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             ----cchh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence                1111 122223589999999999999999999888766

>cd04169 RF3 RF3 subfamily

Probab=98.81  E-value=4.7e-08  Score=70.12  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|...+..+++.+|++++|+|+++...... ..++....       ..++|+++++||+|+... ........+
T Consensus        77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~-------~~~~P~iivvNK~D~~~a-~~~~~~~~l  147 (267)
T cd04169          77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR-------LRGIPIITFINKLDREGR-DPLELLDEI  147 (267)
T ss_pred             ECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH-------hcCCCEEEEEECCccCCC-CHHHHHHHH
Confidence            899999999888888999999999999987543222 23333332       147899999999998542 122223444


Q ss_pred             HHHcC
Q psy10891         81 YKEHN   85 (142)
Q Consensus        81 ~~~~~   85 (142)
                      ...++
T Consensus       148 ~~~l~  152 (267)
T cd04169         148 EEELG  152 (267)
T ss_pred             HHHHC
Confidence            44444

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12739 elongation factor G; Reviewed

Probab=98.80  E-value=8.7e-08  Score=77.01  Aligned_cols=61  Identities=21%  Similarity=0.319  Sum_probs=47.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+...++.+|++++|+|+...........| ..+.       ..++|+|+++||+|+..
T Consensus        79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~-------~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQAD-------KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHH-------HcCCCEEEEEECCCCCC
Confidence            8999999998899999999999999999876544443333 2232       14689999999999853

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.78  E-value=2.8e-08  Score=72.69  Aligned_cols=93  Identities=17%  Similarity=0.103  Sum_probs=64.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC----CCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ----VDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~----~~~   74 (142)
                      ||||||.|.+.+-.-...||++|+++|+.....-+.-+ .++..+.        .=..+++..||+||.+ .+    .-.
T Consensus        92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL--------GIrhvvvAVNKmDLvdy~e~~F~~I~  163 (431)
T COG2895          92 DTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL--------GIRHVVVAVNKMDLVDYSEEVFEAIV  163 (431)
T ss_pred             cCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh--------CCcEEEEEEeeecccccCHHHHHHHH
Confidence            89999999999888888999999999997542111111 2223332        2245899999999987 21    123


Q ss_pred             HHHHHHHHHcCCc--eEEEeeccCCCCHH
Q psy10891         75 NDIECFYKEHNFI--GWTETSTKEGLMVN  101 (142)
Q Consensus        75 ~~~~~~~~~~~~~--~~~~~Sa~~~~~i~  101 (142)
                      .+...++..+++.  .++.+||..|.|+-
T Consensus       164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         164 ADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHcCCCcceEEechhccCCccc
Confidence            3344567777753  48899999998863

>TIGR00503 prfC peptide chain release factor 3

Probab=98.76  E-value=5.6e-08  Score=75.73  Aligned_cols=59  Identities=22%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||+.+|......+++.+|++|+|+|+.+...-. ...++....       ..++|+++++||+|+
T Consensus        86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-------~~~~PiivviNKiD~  144 (527)
T TIGR00503        86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR-------LRDTPIFTFMNKLDR  144 (527)
T ss_pred             ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH-------hcCCCEEEEEECccc
Confidence            89999999987777899999999999998752211 233443332       147899999999997

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.74  E-value=5.1e-08  Score=63.41  Aligned_cols=76  Identities=20%  Similarity=0.196  Sum_probs=50.5

Q ss_pred             HhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEE
Q psy10891         13 RVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWT   90 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~   90 (142)
                      ...+.++|++++|+|+.++.+..  .+..|+...       . .++|+++|+||+|+..+. .......+++..+ .+++
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------~-~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~-~~ii   75 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------D-PRKKNILLLNKADLLTEE-QRKAWAEYFKKEG-IVVV   75 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------c-CCCcEEEEEechhcCCHH-HHHHHHHHHHhcC-CeEE
Confidence            34678999999999999886544  233343322       1 478999999999985421 1122334455555 4688


Q ss_pred             EeeccCCC
Q psy10891         91 ETSTKEGL   98 (142)
Q Consensus        91 ~~Sa~~~~   98 (142)
                      ++||.++.
T Consensus        76 ~iSa~~~~   83 (141)
T cd01857          76 FFSALKEN   83 (141)
T ss_pred             EEEecCCC
Confidence            99998875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1489|consensus

Probab=98.74  E-value=1.2e-07  Score=68.55  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=66.3

Q ss_pred             hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe
Q psy10891         16 YKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET   92 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (142)
                      ++.++.++||+|++.+   ..++.++.+..++..+-  ....+.|.++|+||+|+.+  -....+..+++......++.+
T Consensus       272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye--k~L~~rp~liVaNKiD~~e--ae~~~l~~L~~~lq~~~V~pv  347 (366)
T KOG1489|consen  272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE--KGLADRPALIVANKIDLPE--AEKNLLSSLAKRLQNPHVVPV  347 (366)
T ss_pred             HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh--hhhccCceEEEEeccCchh--HHHHHHHHHHHHcCCCcEEEe
Confidence            4689999999999988   66777666666654221  1235789999999999853  112234667777663348999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q psy10891         93 STKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        93 Sa~~~~~i~~l~~~l~~~  110 (142)
                      ||++++++.+++..|...
T Consensus       348 sA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  348 SAKSGEGLEELLNGLREL  365 (366)
T ss_pred             eeccccchHHHHHHHhhc
Confidence            999999999999887643

>KOG1423|consensus

Probab=98.73  E-value=6.4e-08  Score=69.68  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC--------CHHH----HHHH
Q psy10891         14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV--------DIND----IECF   80 (142)
Q Consensus        14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~--------~~~~----~~~~   80 (142)
                      ..+..||++++|+|+++....-. ...+..+..+      ..+|-|||.||.|... +.+        +...    ...+
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            34678999999999996322111 1223333322      3799999999999754 111        1001    1122


Q ss_pred             HHHcCCc----------------eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEHNFI----------------GWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~~~~----------------~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .+++...                .+|++||++|.||+++.+.|..++
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            3332222                389999999999999999888766

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.73  E-value=7.2e-08  Score=77.47  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=59.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+.+|...+..+++.+|++++|+|+.+.........| ..+.       ..++|+++++||+|+.... .......+
T Consensus        81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~-------~~~~p~ivviNK~D~~~~~-~~~~~~~i  151 (689)
T TIGR00484        81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQAN-------RYEVPRIAFVNKMDKTGAN-FLRVVNQI  151 (689)
T ss_pred             ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHH-------HcCCCEEEEEECCCCCCCC-HHHHHHHH
Confidence            8999999998889999999999999999986655543333 3332       1468999999999986521 22334444


Q ss_pred             HHHcCCce---EEEeeccCC
Q psy10891         81 YKEHNFIG---WTETSTKEG   97 (142)
Q Consensus        81 ~~~~~~~~---~~~~Sa~~~   97 (142)
                      ...++..+   .+.+|+..+
T Consensus       152 ~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       152 KQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHhCCCceeEEeccccCCC
Confidence            45444322   344555444

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.71  E-value=1.2e-07  Score=68.71  Aligned_cols=89  Identities=20%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCCc
Q psy10891         11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNFI   87 (142)
Q Consensus        11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~   87 (142)
                      .....+..+|++++|+|+..+.+...  .++....        .+.|+++|.||+|+.+.    .....|   .+..+ .
T Consensus        17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~--------~~kp~iiVlNK~DL~~~----~~~~~~~~~~~~~~-~   81 (287)
T PRK09563         17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII--------GNKPRLLILNKSDLADP----EVTKKWIEYFEEQG-I   81 (287)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh--------CCCCEEEEEEchhcCCH----HHHHHHHHHHHHcC-C
Confidence            34567789999999999988755433  2233332        36899999999998531    222223   23334 4


Q ss_pred             eEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         88 GWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        88 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++.+|++++.|+.+++..+...+.+.
T Consensus        82 ~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         82 KALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            588999999999999999988877654

>KOG0077|consensus

Probab=98.66  E-value=8.5e-08  Score=63.18  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=74.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |.+|+..=+..|..|+..+|++++++|+-+.+-|...+.-+..+.   .......+|+++.+||+|... ...+++..-.
T Consensus        70 DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll---~~e~la~vp~lilgnKId~p~-a~se~~l~~~  145 (193)
T KOG0077|consen   70 DLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALL---SDESLATVPFLILGNKIDIPY-AASEDELRFH  145 (193)
T ss_pred             ccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHH---hHHHHhcCcceeecccccCCC-cccHHHHHHH
Confidence            678888888999999999999999999999988877665554444   222346899999999999865 2233333221


Q ss_pred             ---HHHcC-----------C--ceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 ---YKEHN-----------F--IGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ---~~~~~-----------~--~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                         ....+           .  ..+++||...+.+-.+.|.++..+
T Consensus       146 l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  146 LGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             HHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence               11111           1  236788988888877777776544

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.65  E-value=5.8e-07  Score=61.66  Aligned_cols=104  Identities=15%  Similarity=0.070  Sum_probs=63.6

Q ss_pred             CCCcchhhhhhhHhh-----hccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CC-
Q psy10891          1 MTEGQERFTWMTRVY-----YKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQ-   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~-----~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~-   71 (142)
                      ||||..........|     +.++|++++|.+. .   +... ..|+..+..       .+.|+++|+||+|+..  .. 
T Consensus        58 DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~---~~~~d~~~~~~l~~-------~~~~~ilV~nK~D~~~~~~~~  126 (197)
T cd04104          58 DLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-R---FSSNDVKLAKAIQC-------MGKKFYFVRTKVDRDLSNEQR  126 (197)
T ss_pred             eCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-C---CCHHHHHHHHHHHH-------hCCCEEEEEecccchhhhhhc
Confidence            789975433322233     6788999998543 2   2222 345555532       2579999999999853  10 


Q ss_pred             ---------CCHHHHHHHH----HHc--CCceEEEeecc--CCCCHHHHHHHHHHHHHHHh
Q psy10891         72 ---------VDINDIECFY----KEH--NFIGWTETSTK--EGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        72 ---------~~~~~~~~~~----~~~--~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~  115 (142)
                               ...+.+...+    ...  ...++|.+|+.  .+.++..+.+.+...+.+++
T Consensus       127 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         127 SKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence                     0011111112    221  22458899998  56899999999999998764

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1707|consensus

Probab=98.64  E-value=6.7e-08  Score=74.49  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=72.5

Q ss_pred             HhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHH-HHHHHHHcC-Cce
Q psy10891         13 RVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDIND-IECFYKEHN-FIG   88 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~-~~~~~~~~~-~~~   88 (142)
                      ..-++.||++.++|+++++.|.+.+. .|+..+.+..  ....++|+||||||+|... .....+. ..-+..++. +--
T Consensus        74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~--~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt  151 (625)
T KOG1707|consen   74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLF--GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET  151 (625)
T ss_pred             HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhccc--CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH
Confidence            55678999999999999999999865 8999995211  1225799999999999876 2221122 223333332 112


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         89 WTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        89 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      -++|||++-.++.++|.-..+.++...
T Consensus       152 ciecSA~~~~n~~e~fYyaqKaVihPt  178 (625)
T KOG1707|consen  152 CIECSALTLANVSELFYYAQKAVIHPT  178 (625)
T ss_pred             HHhhhhhhhhhhHhhhhhhhheeeccC
Confidence            678999999999999988877776644

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.63  E-value=1.8e-07  Score=70.77  Aligned_cols=107  Identities=18%  Similarity=0.229  Sum_probs=73.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--CCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--QVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--~~~~~~~   77 (142)
                      |||||-+|..-.+..+.-.|++++++|+...+--+.-...-+.+.        .+.+.|+|.||+|... +  .+-.+..
T Consensus        74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--------~gL~PIVVvNKiDrp~Arp~~Vvd~vf  145 (603)
T COG1217          74 DTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--------LGLKPIVVINKIDRPDARPDEVVDEVF  145 (603)
T ss_pred             cCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--------cCCCcEEEEeCCCCCCCCHHHHHHHHH
Confidence            899999999999999999999999999987543222112223332        4677789999999876 2  1222222


Q ss_pred             HHHH------HHcCCceEEEeeccCCC----------CHHHHHHHHHHHHHHHhC
Q psy10891         78 ECFY------KEHNFIGWTETSTKEGL----------MVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        78 ~~~~------~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~~~  116 (142)
                      ..|.      .++. .|+++.|+..|.          ++..||+.|+.++.....
T Consensus       146 DLf~~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         146 DLFVELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             HHHHHhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            2222      2233 468888988873          577888888888866543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.61  E-value=1.9e-07  Score=63.12  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=44.8

Q ss_pred             CCCcchhhhhhh-Hh--hhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMT-RV--YYKDAHGCIIMFDLTN-QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~-~~--~~~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |+||+++.+... ..  +...+-+||||+|.+. +....++.+++-.+..... .....+|++|++||.|+..
T Consensus        55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~-~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTE-VQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-CCTT--EEEEEEE-TTSTT
T ss_pred             ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhh-hccCCCCEEEEEeCccccc
Confidence            899999988744 33  4789999999999974 3455555555544443221 1246799999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.59  E-value=6.8e-07  Score=64.10  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=63.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+.+|...+..++..+|++++|+|++..........|. .+.       ..++|+++++||+|.... ........+
T Consensus        70 DtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~-------~~~~p~iivvNK~D~~~~-~~~~~~~~l  140 (268)
T cd04170          70 DTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD-------EAGIPRIIFINKMDRERA-DFDKTLAAL  140 (268)
T ss_pred             ECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH-------HcCCCEEEEEECCccCCC-CHHHHHHHH
Confidence            89999999888899999999999999999875554433332 221       146899999999998642 223344445


Q ss_pred             HHHcCCce-EEEeeccCCCCHHHHHHHH
Q psy10891         81 YKEHNFIG-WTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        81 ~~~~~~~~-~~~~Sa~~~~~i~~l~~~l  107 (142)
                      ...++... .+.+...++.++..+.+.+
T Consensus       141 ~~~~~~~~~~~~ip~~~~~~~~~~vd~~  168 (268)
T cd04170         141 QEAFGRPVVPLQLPIGEGDDFKGVVDLL  168 (268)
T ss_pred             HHHhCCCeEEEEecccCCCceeEEEEcc
Confidence            45555321 2334455555544443333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.58  E-value=1.6e-07  Score=66.34  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=56.6

Q ss_pred             CCCcchhhhhhhHhhh--------ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYY--------KDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~--------~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |||||.++...|....        ...-++++++|+...   ..|-.  .++-.+....+    -+.|.|.|.||+|+..
T Consensus        97 DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~----~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   97 DTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLR----LELPHVNVLSKIDLLS  170 (238)
T ss_dssp             E--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHH----HTSEEEEEE--GGGS-
T ss_pred             eCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhh----CCCCEEEeeeccCccc
Confidence            8999999988776655        567789999998643   33332  33222211110    3799999999999965


Q ss_pred             CC--------C------------CHHHHHHHH---HHcCCc-eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         70 RQ--------V------------DINDIECFY---KEHNFI-GWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        70 ~~--------~------------~~~~~~~~~---~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ..        .            .......++   ..++.. .++.+|+.++.++.+++..+-+.+
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            11        0            011111222   233444 689999999999999998776543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1144|consensus

Probab=98.58  E-value=3.9e-07  Score=72.31  Aligned_cols=103  Identities=18%  Similarity=0.173  Sum_probs=70.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC-C-CC----
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP-H-RQ----   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~-~~----   71 (142)
                      ||||+|.|..++.....-+|++|+|+|+...   ++.+.+    ..+       ...+.|+|+..||+|.+ . ..    
T Consensus       546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lL-------R~rktpFivALNKiDRLYgwk~~p~~  614 (1064)
T KOG1144|consen  546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLL-------RMRKTPFIVALNKIDRLYGWKSCPNA  614 (1064)
T ss_pred             cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHH-------HhcCCCeEEeehhhhhhcccccCCCc
Confidence            8999999999999888999999999999864   333332    222       22589999999999963 1 10    


Q ss_pred             -------------------CCHHHHHHHHHHcCC--------------ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         72 -------------------VDINDIECFYKEHNF--------------IGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        72 -------------------~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                                         .....+.+|+. .|+              ..++.+||.+|+||-+|+.+|+...-...
T Consensus       615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  615 PIVEALKKQKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence                               00111112221 121              12567899999999999999987765543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1.5e-06  Score=65.39  Aligned_cols=103  Identities=12%  Similarity=0.012  Sum_probs=72.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHH--HHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKW--KKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~   78 (142)
                      |+||+++|-+.+-......|.+++|++.++.......+.+  +..+         .-...++|+||+|..+.....+.+.
T Consensus        56 Dvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdll---------gi~~giivltk~D~~d~~r~e~~i~  126 (447)
T COG3276          56 DVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLL---------GIKNGIIVLTKADRVDEARIEQKIK  126 (447)
T ss_pred             eCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhc---------CCCceEEEEeccccccHHHHHHHHH
Confidence            7999999988887788899999999999754333332222  2222         2334599999999865222233333


Q ss_pred             HHHHH--cCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         79 CFYKE--HNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .+...  +...+++.+|+++|+||++|.+.|.....
T Consensus       127 ~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         127 QILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            33333  23356889999999999999999999884

>PRK00007 elongation factor G; Reviewed

Probab=98.50  E-value=1.1e-06  Score=70.76  Aligned_cols=88  Identities=15%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+.+|.......++.+|++++|+|............|.....        .++|+|+++||+|+.... .......+
T Consensus        81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--------~~~p~iv~vNK~D~~~~~-~~~~~~~i  151 (693)
T PRK00007         81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--------YKVPRIAFVNKMDRTGAD-FYRVVEQI  151 (693)
T ss_pred             eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCCCCCC-HHHHHHHH
Confidence            899999998877778899999999999987755555444433221        468999999999987522 23344445


Q ss_pred             HHHcCC---ceEEEeeccCC
Q psy10891         81 YKEHNF---IGWTETSTKEG   97 (142)
Q Consensus        81 ~~~~~~---~~~~~~Sa~~~   97 (142)
                      ...++.   ...+.+|+..+
T Consensus       152 ~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        152 KDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHhCCCeeeEEecCccCCc
Confidence            555554   22445666554

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.50  E-value=2.1e-06  Score=63.06  Aligned_cols=57  Identities=23%  Similarity=0.159  Sum_probs=40.5

Q ss_pred             CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHH-HHHHHHHH
Q psy10891         54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK-FLLDVLMR  113 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~  113 (142)
                      ..+|+|+|+||.|+...   .+....+.......+++.+||+.+.++.++.+ .+..++..
T Consensus       213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         213 RSKPMVIAANKADIPDA---ENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             cCCcEEEEEEHHHccCh---HHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            35799999999997531   11222233344445699999999999999997 58887743

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.49  E-value=1.4e-06  Score=65.04  Aligned_cols=84  Identities=12%  Similarity=0.027  Sum_probs=59.2

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK   95 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   95 (142)
                      ..++|.+++|+++..+.+...++.++..+..       .+++.+||.||+|+.+.  ..+....+.......+++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-------~~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-------SGAEPVIVLTKADLCED--AEEKIAEVEALAPGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-------cCCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCcEEEEECC
Confidence            5789999999999755555566677666531       46888999999999642  11222333332222568999999


Q ss_pred             CCCCHHHHHHHHH
Q psy10891         96 EGLMVNDSMKFLL  108 (142)
Q Consensus        96 ~~~~i~~l~~~l~  108 (142)
                      ++.|+++|...+.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999888773

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.46  E-value=1.2e-06  Score=64.62  Aligned_cols=87  Identities=10%  Similarity=0.010  Sum_probs=54.1

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC--------C
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN--------F   86 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------~   86 (142)
                      ....+|.+++|.+....   +++......+.         .+..|+|+||+|+............+...+.        +
T Consensus       166 i~~~aD~vlvv~~p~~g---d~iq~~k~gi~---------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w  233 (332)
T PRK09435        166 VAGMVDFFLLLQLPGAG---DELQGIKKGIM---------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGW  233 (332)
T ss_pred             HHHhCCEEEEEecCCch---HHHHHHHhhhh---------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCC
Confidence            45679999999764433   33322222222         2334899999998652211112222222221        2


Q ss_pred             -ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         87 -IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        87 -~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       .|++.+||.++.|++++++.|..++..
T Consensus       234 ~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        234 QPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence             468999999999999999999988753

>KOG0090|consensus

Probab=98.43  E-value=2.6e-06  Score=58.50  Aligned_cols=68  Identities=19%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             CCCcchhhhhhhHhhhc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYK---DAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~---~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |.||+.|.+.-...++.   .+-+++||+|..-. .-..++..++-.+...++. ....+|++++.||.|+..
T Consensus        88 D~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen   88 DLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             eCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhh
Confidence            78999999887777776   79999999998643 2334444444343322211 235789999999999854

>TIGR00101 ureG urease accessory protein UreG

Probab=98.42  E-value=2.5e-06  Score=58.72  Aligned_cols=81  Identities=17%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHH-cCCceEEEeeccC
Q psy10891         19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKE-HNFIGWTETSTKE   96 (142)
Q Consensus        19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~   96 (142)
                      +|.+|.|+|+.+..+...  .+...+          ...-++++||+|+.+ .....+......+. ....+++++|+++
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~  180 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKT  180 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCC
Confidence            688999999987544221  111122          223389999999964 12234444444444 3336799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy10891         97 GLMVNDSMKFLLDVL  111 (142)
Q Consensus        97 ~~~i~~l~~~l~~~~  111 (142)
                      |.|++++|+++.+++
T Consensus       181 g~gi~el~~~i~~~~  195 (199)
T TIGR00101       181 KEGLDTVIDWIEHYA  195 (199)
T ss_pred             CCCHHHHHHHHHhhc
Confidence            999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.41  E-value=2.6e-06  Score=62.31  Aligned_cols=98  Identities=11%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             hccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEE
Q psy10891         16 YKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTE   91 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (142)
                      +.++-++++|+|++..+   -.++...+..++..+.  ....+.|.++|+||+|+.. ..........+.+..+..+++.
T Consensus       235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~  312 (369)
T COG0536         235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL  312 (369)
T ss_pred             HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence            35789999999998543   2455555556665332  1235889999999999643 1112222223333444443333


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         92 TSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        92 ~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +||.++.|++++...+...+.+..
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         313 ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHHhh
Confidence            999999999999999998887765

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.37  E-value=3.2e-06  Score=68.55  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.+|.......++.+|++++|+|+...........|.....        .+.|+|+++||+|+.
T Consensus        93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--------~~~~~iv~iNK~D~~  152 (731)
T PRK07560         93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--------ERVKPVLFINKVDRL  152 (731)
T ss_pred             cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--------cCCCeEEEEECchhh
Confidence            899999999888889999999999999987644444334433332        356889999999975

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.36  E-value=3.1e-06  Score=66.74  Aligned_cols=87  Identities=17%  Similarity=0.096  Sum_probs=62.7

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891         17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE   96 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   96 (142)
                      .+.|+++-|+|+++.+-.-.+  -++.+.        -++|++++.|++|..++.--.-+...+.+..| .|++.+||++
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyl--tlQLlE--------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-vPVv~tvA~~  148 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYL--TLQLLE--------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG-VPVVPTVAKR  148 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHH--HHHHHH--------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-CCEEEEEeec
Confidence            466999999999986432221  122221        47899999999998763223334456778888 6799999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy10891         97 GLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        97 ~~~i~~l~~~l~~~~~~~  114 (142)
                      |.|++++..++.......
T Consensus       149 g~G~~~l~~~i~~~~~~~  166 (653)
T COG0370         149 GEGLEELKRAIIELAESK  166 (653)
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999988755443

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=2.2e-06  Score=64.09  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=61.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHH---HHH--HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFK---NTL--KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      |+||+..|-.-+-.-...||++|+|+|+++.+   .|.   ..+  .++...        ..-..+|++.||.|+.+  .
T Consensus        91 DaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--------lGi~~lIVavNKMD~v~--w  160 (428)
T COG5256          91 DAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--------LGIKQLIVAVNKMDLVS--W  160 (428)
T ss_pred             eCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--------cCCceEEEEEEcccccc--c
Confidence            89999999987777778999999999998762   110   011  111221        12234899999999975  2


Q ss_pred             CHHH-------HHHHHHHcCCc----eEEEeeccCCCCHHH
Q psy10891         73 DIND-------IECFYKEHNFI----GWTETSTKEGLMVND  102 (142)
Q Consensus        73 ~~~~-------~~~~~~~~~~~----~~~~~Sa~~~~~i~~  102 (142)
                      +.+.       ...+.+..|+.    +|+.||+..|.|+.+
T Consensus       161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            2222       22245566653    489999999998754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.33  E-value=2e-06  Score=69.51  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|......+++.+|++++|+|+...........|.....        .+.|+++++||+|...
T Consensus        92 DTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        92 DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--------ENVKPVLFINKVDRLI  152 (720)
T ss_pred             eCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--------cCCCEEEEEEChhccc
Confidence            899999999888899999999999999987543333333322221        4678899999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.28  E-value=1.3e-05  Score=58.48  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             cCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891         18 DAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK   95 (142)
Q Consensus        18 ~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   95 (142)
                      =+++|+|+||.+..  .+.+....++.++....      +.|+++|.||+|... ....+.+.......+......+++.
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~-~e~~~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIAD-EEKLEEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccc-hhHHHHHHHHHHhhccccccceeee
Confidence            36889999999863  57788888888887544      489999999999864 2234444444555554557788999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy10891         96 EGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        96 ~~~~i~~l~~~l~~~~~~  113 (142)
                      .+.+++.+...+...+.+
T Consensus       320 ~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         320 KGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ehhhHHHHHHHHHHHhhc
Confidence            999998888777776554

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.27  E-value=7.5e-06  Score=59.23  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             hhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH-HHHHHHHHHc
Q psy10891          7 RFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI-NDIECFYKEH   84 (142)
Q Consensus         7 ~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~   84 (142)
                      |.+.+.+..+.+.|-+++++.+.+|+ +...++.++-...       ..++..|+|.||+|+.+..... +....+....
T Consensus        68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae-------~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~  140 (301)
T COG1162          68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE-------AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI  140 (301)
T ss_pred             ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH-------HcCCcEEEEEEccccCcchHHHHHHHHHHHHhC
Confidence            44445555666788888888888775 6666777766553       2578888999999998622111 3455567777


Q ss_pred             CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         85 NFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      + .+++.+|++++.+++++...+...
T Consensus       141 g-y~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         141 G-YPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             C-eeEEEecCcCcccHHHHHHHhcCC
Confidence            7 569999999999999998887543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=2.8e-06  Score=61.84  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~   73 (142)
                      |.||+|-...++-+-..=.|++++|+..+.+    ++-+.+..+  ++.        .-..+|++-||+|+..+.   ..
T Consensus        92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al--eIi--------gik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL--EII--------GIKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             eCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH--hhh--------ccceEEEEecccceecHHHHHHH
Confidence            7899997666554444445999999999864    454443221  221        345789999999997622   22


Q ss_pred             HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      .+++..|.+-.  ...|++.+||..+.||+.+++.|.+++.....
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            33333333221  11579999999999999999999999876543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.23  E-value=3e-06  Score=69.65  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.+|.......++.+|++|+|+|+...........|.....        .++|+|+++||+|..
T Consensus       104 DtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--------~~~p~i~~iNK~D~~  163 (843)
T PLN00116        104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--------ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--------CCCCEEEEEECCccc
Confidence            899999999999888999999999999988755444344433332        578999999999986

>KOG1490|consensus

Probab=98.22  E-value=1.3e-05  Score=61.39  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             CEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHH--HHHHHHHcCCceEEEeec
Q psy10891         20 HGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDIND--IECFYKEHNFIGWTETST   94 (142)
Q Consensus        20 d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~--~~~~~~~~~~~~~~~~Sa   94 (142)
                      .+|+++.|++..  .|......++..+....     .+.|.|+|.||+|+.. ..+..+.  +.+....-+..+++.+|+
T Consensus       249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF-----aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-----ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             hhheeeeechhhhCCCHHHHHHHHHHhHHHh-----cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            568888999864  57777667777776555     6899999999999876 3333332  222233344467999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHh
Q psy10891         95 KEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        95 ~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .+..|+.++....+..++...
T Consensus       324 ~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             cchhceeeHHHHHHHHHHHHH
Confidence            999999999999888888654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.19  E-value=9e-06  Score=57.19  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CCCcchhhhhh-----hHhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---
Q psy10891          1 MTEGQERFTWM-----TRVYYKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---   69 (142)
Q Consensus         1 Dt~G~e~~~~~-----~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---   69 (142)
                      |.|||..+...     .+..++++.++|+|+|+...+   .+..+...+..+.+.+     +++.+-+..+|+|+..   
T Consensus        54 D~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-----p~~~v~vfiHK~D~l~~~~  128 (232)
T PF04670_consen   54 DCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-----PNIKVFVFIHKMDLLSEDE  128 (232)
T ss_dssp             EE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-----TT-EEEEEEE-CCCS-HHH
T ss_pred             EcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-----CCCeEEEEEeecccCCHHH
Confidence            78998766543     577899999999999998433   2333445555555554     7899999999999875   


Q ss_pred             CC----CCHHHHHHHHHHcC--CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 RQ----VDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ~~----~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +.    ...+.+...+...+  ...++.+|.-+ +.+.+.|..++..+.
T Consensus       129 r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  129 REEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence            11    11222333344444  13478888888 477777777776664

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00416 elongation factor 2; Provisional

Probab=98.16  E-value=4.4e-06  Score=68.58  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.+|.......++.+|++|+|+|+...........| ..+.       ..++|+|+++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~-------~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQAL-------QERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHH-------HcCCCEEEEEEChhhh
Confidence            8999999998888899999999999999886544443334 3332       1468999999999986

>KOG1707|consensus

Probab=98.15  E-value=1.1e-05  Score=62.69  Aligned_cols=92  Identities=20%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891         17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTK   95 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~   95 (142)
                      ..+|++.++||++++.||......+....      ....+|+++|++|+|+.+ .+...-....++.++++.+.+.+|.+
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~------~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~  567 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYF------DLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSK  567 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhh------hccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccC
Confidence            56899999999999999998776654442      226899999999999976 22222222789999998777888888


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q psy10891         96 EGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        96 ~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .... .++|.+|+.++....
T Consensus       568 ~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  568 TLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCCC-chHHHHHHHhhhCCC
Confidence            6434 899999999988765

>KOG0082|consensus

Probab=98.11  E-value=1.2e-05  Score=59.40  Aligned_cols=116  Identities=15%  Similarity=0.078  Sum_probs=73.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh--hH-----HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN--SF-----KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~--s~-----~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---   70 (142)
                      |++||..-+.-|-.++.+++++|||+++++=.  .+     ..+..-+..+...++..-=.+.++||..||.|+...   
T Consensus       201 DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~  280 (354)
T KOG0082|consen  201 DVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIK  280 (354)
T ss_pred             eCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhc
Confidence            89999999999999999999999999997421  11     112222222222222222357999999999998430   


Q ss_pred             ------------CC-CHHHHHHH----HH----Hc-CCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         71 ------------QV-DINDIECF----YK----EH-NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        71 ------------~~-~~~~~~~~----~~----~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                                  .. ..+....+    +.    .. .-.-+..++|.+-.+|..+|+.+...+..++-
T Consensus       281 ~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  281 KVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             cCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence                        01 11111111    11    11 11214467999999999999999999987653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.08  E-value=3.6e-05  Score=53.20  Aligned_cols=56  Identities=20%  Similarity=0.186  Sum_probs=40.1

Q ss_pred             CCCEEEEEeCCCCCCC-CCCHHHHHHHHHHc-CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPHR-QVDINDIECFYKEH-NFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ..|.++++||+|+... ...........+.. ...+++++||+++.|++++|+++..+
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999642 22233333333332 33579999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=9.1e-06  Score=58.62  Aligned_cols=102  Identities=13%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCC-EEEEEeCCCCCC-C---CCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIP-CMLLANKCDLPH-R---QVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~---~~~~   74 (142)
                      |+||+.+|-..+-.-.+..|+.|+|+.+++.+--+..+..+ ...         -++| ++++.||+|+.+ +   ..-+
T Consensus        81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq---------vGvp~ivvflnK~Dmvdd~ellelVe  151 (394)
T COG0050          81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ---------VGVPYIVVFLNKVDMVDDEELLELVE  151 (394)
T ss_pred             cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh---------cCCcEEEEEEecccccCcHHHHHHHH
Confidence            89999999887766778899999999999864333322222 221         3776 688899999976 2   1233


Q ss_pred             HHHHHHHHHcCCc----eEEEeeccCCC--------CHHHHHHHHHHHH
Q psy10891         75 NDIECFYKEHNFI----GWTETSTKEGL--------MVNDSMKFLLDVL  111 (142)
Q Consensus        75 ~~~~~~~~~~~~~----~~~~~Sa~~~~--------~i~~l~~~l~~~~  111 (142)
                      -+...+...+++.    |++.-||...-        .|.+|++.+..++
T Consensus       152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi  200 (394)
T COG0050         152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI  200 (394)
T ss_pred             HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence            4456677888863    56666665432        2455555554444

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.08  E-value=2.1e-05  Score=42.94  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             cCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891         18 DAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus        18 ~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      =.++++|++|++..  .|.+....++.+++...     .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-----~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-----PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-----TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-----CCCCEEEEEeccC
Confidence            36899999999864  57777778888887665     6899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.07  E-value=2.8e-05  Score=56.79  Aligned_cols=85  Identities=13%  Similarity=0.058  Sum_probs=53.3

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH--------HHHHHHH-cC
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND--------IECFYKE-HN   85 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--------~~~~~~~-~~   85 (142)
                      ....+|.++++....   +.+.+......+         ..+|.++|+||+|+.... ....        ...+... .+
T Consensus       144 i~~~aD~i~vv~~~~---~~~el~~~~~~l---------~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~l~~~~~~  210 (300)
T TIGR00750       144 IANMADTFVVVTIPG---TGDDLQGIKAGL---------MEIADIYVVNKADGEGAT-NVTIARLMLALALEEIRRREDG  210 (300)
T ss_pred             HHHhhceEEEEecCC---ccHHHHHHHHHH---------hhhccEEEEEcccccchh-HHHHHHHHHHHHHhhccccccC
Confidence            456678888875433   334444444444         367889999999986511 1111        0111111 12


Q ss_pred             C-ceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         86 F-IGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        86 ~-~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      + .+++.+||+++.|+++++.++..+..
T Consensus       211 ~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       211 WRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             CCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            2 35899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01882 BMS1 Bms1

Probab=97.93  E-value=0.00012  Score=51.40  Aligned_cols=89  Identities=11%  Similarity=-0.018  Sum_probs=51.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCC----CHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQV----DIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~----~~~   75 (142)
                      ||||.-  ..+.. ....+|++++|+|.+........ .++..+.       ..+.|. ++|+||+|+.....    ...
T Consensus        89 DtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~~~-~i~~~l~-------~~g~p~vi~VvnK~D~~~~~~~~~~~~~  157 (225)
T cd01882          89 ECPNDI--NAMID-IAKVADLVLLLIDASFGFEMETF-EFLNILQ-------VHGFPRVMGVLTHLDLFKKNKTLRKTKK  157 (225)
T ss_pred             eCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHHHH-HHHHHHH-------HcCCCeEEEEEeccccCCcHHHHHHHHH
Confidence            678753  33333 45789999999999865433332 2333332       135674 55999999864111    111


Q ss_pred             HHHH-HHH-HcCCceEEEeeccCCCCH
Q psy10891         76 DIEC-FYK-EHNFIGWTETSTKEGLMV  100 (142)
Q Consensus        76 ~~~~-~~~-~~~~~~~~~~Sa~~~~~i  100 (142)
                      .+.. +.. .....+++.+||+++..+
T Consensus       158 ~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         158 RLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             HHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            2222 221 234467999999988543

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.88  E-value=0.00016  Score=54.08  Aligned_cols=105  Identities=11%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             CCCcchhhhhhh--HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHH
Q psy10891          1 MTEGQERFTWMT--RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~--~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~   75 (142)
                      ||.|+|.|.+++  ..+-.+.|-.++++.+++..+.-.-+.+--.        ..-..|+|++.||+|+.+..   -..+
T Consensus       207 DtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~--------~a~~lPviVvvTK~D~~~ddr~~~v~~  278 (527)
T COG5258         207 DTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIA--------LAMELPVIVVVTKIDMVPDDRFQGVVE  278 (527)
T ss_pred             ecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhh--------hhhcCCEEEEEEecccCcHHHHHHHHH
Confidence            899999998764  4455789999999999988665432222111        12479999999999986511   0111


Q ss_pred             HHHHH----------------------HHHc--CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         76 DIECF----------------------YKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        76 ~~~~~----------------------~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++..+                      +-..  +..|++.+|+-+|.|++ +++.+...+..+
T Consensus       279 ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~r  340 (527)
T COG5258         279 EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKR  340 (527)
T ss_pred             HHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcc
Confidence            11111                      1111  23689999999999986 555555555443

>KOG0468|consensus

Probab=97.86  E-value=2.1e-05  Score=62.22  Aligned_cols=60  Identities=18%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+-.|..-+-..++-+|++++|+|+....++..-+.+...+.        .+.|+++|+||.|..
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--------~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--------NRLPIVVVINKVDRL  262 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--------ccCcEEEEEehhHHH
Confidence            899999999999999999999999999998877765433333332        679999999999964

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=9.9e-05  Score=55.93  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |||||++|+.=+...+.-+|.+++|+|+-....-+.. .+    ...|   ...++||+-.+||.|... ..+.+.+.++
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KL----feVc---rlR~iPI~TFiNKlDR~~-rdP~ELLdEi  157 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KL----FEVC---RLRDIPIFTFINKLDREG-RDPLELLDEI  157 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HH----HHHH---hhcCCceEEEeecccccc-CChHHHHHHH
Confidence            8999999998877778889999999999765322221 22    2222   336899999999999865 3356666666


Q ss_pred             HHHcCC
Q psy10891         81 YKEHNF   86 (142)
Q Consensus        81 ~~~~~~   86 (142)
                      .+.+++
T Consensus       158 E~~L~i  163 (528)
T COG4108         158 EEELGI  163 (528)
T ss_pred             HHHhCc
Confidence            666664

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=4.6e-05  Score=61.27  Aligned_cols=61  Identities=20%  Similarity=0.283  Sum_probs=50.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |||||-+|..-....++-+|++++|+|+...-..+.-.-|.....        .++|.+++.||.|...
T Consensus        82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--------~~vp~i~fiNKmDR~~  142 (697)
T COG0480          82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--------YGVPRILFVNKMDRLG  142 (697)
T ss_pred             CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--------cCCCeEEEEECccccc
Confidence            899999999999999999999999999988655454445655443        6899999999999765

>KOG0458|consensus

Probab=97.78  E-value=5.7e-05  Score=58.75  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-------HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-------TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~   72 (142)
                      |+||+..|-.-+-.-...||++++|+|++.. .|+.       .++....++ ..     .-..+|+++||.|+.+ ...
T Consensus       261 DaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr-~L-----gi~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  261 DAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLR-SL-----GISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             cCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHH-Hc-----CcceEEEEeecccccCccHH
Confidence            8999999998777777889999999999753 2321       112211221 11     2345899999999976 221


Q ss_pred             CHHH----HHHHH-HHcCCc----eEEEeeccCCCCHH
Q psy10891         73 DIND----IECFY-KEHNFI----GWTETSTKEGLMVN  101 (142)
Q Consensus        73 ~~~~----~~~~~-~~~~~~----~~~~~Sa~~~~~i~  101 (142)
                      ..++    +..|. +..|+.    .|+.||+.+|+|+-
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence            1222    22334 445552    48999999999864

>PRK09602 translation-associated GTPase; Reviewed

Probab=97.77  E-value=0.00023  Score=53.96  Aligned_cols=54  Identities=28%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHH-HHHHHHHHH
Q psy10891         54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND-SMKFLLDVL  111 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-l~~~l~~~~  111 (142)
                      ..+|+|+|+||.|+...   .+....+... +...++.+||+.+.++.+ +++.+..++
T Consensus       216 t~KPvI~VlNK~D~~~~---~~~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~l  270 (396)
T PRK09602        216 ISKPMVIAANKADLPPA---EENIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYI  270 (396)
T ss_pred             cCCCEEEEEEchhcccc---hHHHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence            35899999999997431   1122333333 545689999999999988 566655554

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.75  E-value=0.0001  Score=54.43  Aligned_cols=90  Identities=18%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc
Q psy10891          5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH   84 (142)
Q Consensus         5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~   84 (142)
                      +.++.......+..+|+|+-|+|+.+|.+....  -+..+   .     ...|.++|+||+|+.+..+.......+....
T Consensus        21 ~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~---v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~   90 (322)
T COG1161          21 MKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERI---V-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEE   90 (322)
T ss_pred             hHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHH---H-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence            455666777788999999999999998754431  11222   1     4566699999999987444444444444444


Q ss_pred             CCceEEEeeccCCCCHHHHHH
Q psy10891         85 NFIGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        85 ~~~~~~~~Sa~~~~~i~~l~~  105 (142)
                      +. ..+.++++.+.+...+..
T Consensus        91 ~~-~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          91 GI-KPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             CC-ccEEEEeecccCccchHH
Confidence            53 367788888887766664

>cd01850 CDC_Septin CDC/Septin

Probab=97.74  E-value=8.3e-05  Score=53.73  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=41.6

Q ss_pred             cCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHHHHHHHHcCCceEEEee
Q psy10891         18 DAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDIECFYKEHNFIGWTETS   93 (142)
Q Consensus        18 ~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S   93 (142)
                      .+|+++++++.+.. .+-.+ ...+..+.        ..+|+|+|+||+|+..   .......+...+..++ ++++.+.
T Consensus       114 rvh~~ly~i~~~~~~l~~~D-~~~lk~l~--------~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~  183 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLD-IEFMKRLS--------KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHN-IKIYKFP  183 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHH-HHHHHHHh--------ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcC-CceECCC
Confidence            57888888887641 11111 23344442        3689999999999865   1223455666677777 4477655


Q ss_pred             cc
Q psy10891         94 TK   95 (142)
Q Consensus        94 a~   95 (142)
                      ..
T Consensus       184 ~~  185 (276)
T cd01850         184 ED  185 (276)
T ss_pred             CC
Confidence            43

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.72  E-value=0.00024  Score=44.37  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceE
Q psy10891         11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGW   89 (142)
Q Consensus        11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~   89 (142)
                      ....+++.++.+++||+.++..|+...  |...+..    ....+.|.++++||.|+.. ..+..        ..+ .++
T Consensus        39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~----~~k~dl~~~~~~nk~dl~~~~~~~~--------~~~-~~~  103 (124)
T smart00010       39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLV----GNKSDLPILVGGNRDVLEEERQVAT--------EEG-LEF  103 (124)
T ss_pred             ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHh----cCCCCCcEEEEeechhhHhhCcCCH--------HHH-HHH
Confidence            345678899999999999999998765  8776642    2235688999999999843 22222        222 236


Q ss_pred             EEeeccCCCCHH
Q psy10891         90 TETSTKEGLMVN  101 (142)
Q Consensus        90 ~~~Sa~~~~~i~  101 (142)
                      +++|++++.++.
T Consensus       104 ~~~s~~~~~~~~  115 (124)
T smart00010      104 AETSAKTPEEGE  115 (124)
T ss_pred             HHHhCCCcchhh
Confidence            677889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.71  E-value=0.0001  Score=49.62  Aligned_cols=44  Identities=18%  Similarity=0.136  Sum_probs=29.2

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         20 HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        20 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |++++|+|+.++.+... ..+...+.  .   ...+.|+|+|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l---~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--Q---AGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--h---ccCCCCEEEEEehhhcCC
Confidence            78999999998754332 22333310  0   113689999999999965

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1191|consensus

Probab=97.71  E-value=0.0001  Score=56.47  Aligned_cols=113  Identities=16%  Similarity=0.080  Sum_probs=67.2

Q ss_pred             CCCcchhhh-hh--------hHhhhccCCEEEEEEeC--CChhhHHHHHHHHHHHHHhcc--cCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFT-WM--------TRVYYKDAHGCIIMFDL--TNQNSFKNTLKWKKDVDLKCT--LSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~-~~--------~~~~~~~ad~ii~v~d~--~~~~s~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||...-. ..        ...-...||++++|+|+  ++-.+...+...+.....-+.  .+.....|++++.||.|+
T Consensus       322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~  401 (531)
T KOG1191|consen  322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL  401 (531)
T ss_pred             eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence            889965511 11        24446789999999999  444444443444444321110  012245789999999998


Q ss_pred             CC--CCCCHHHHHHHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         68 PH--RQVDINDIECFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        68 ~~--~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ..  +........ +....   .+..+.++|+++++|++.|...+.+.+..-
T Consensus       402 ~s~~~~~~~~~~~-~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  402 VSKIPEMTKIPVV-YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cCccccccCCcee-ccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            75  222221111 11111   112355699999999999999998887654

>KOG1424|consensus

Probab=97.66  E-value=0.00016  Score=55.70  Aligned_cols=77  Identities=22%  Similarity=0.233  Sum_probs=54.7

Q ss_pred             hhhhhhhHhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH--
Q psy10891          6 ERFTWMTRVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY--   81 (142)
Q Consensus         6 e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~--   81 (142)
                      |-|+.+|+ .+..+|+||.++|+.+|.=|.  +++.++.++.        +..-.+|++||.||..    .+....|+  
T Consensus       163 E~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d--------~~K~~~LLvNKaDLl~----~~qr~aWa~Y  229 (562)
T KOG1424|consen  163 EIWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD--------PSKANVLLVNKADLLP----PEQRVAWAEY  229 (562)
T ss_pred             HHHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc--------cccceEEEEehhhcCC----HHHHHHHHHH
Confidence            44556666 467899999999999986443  4556666653        4577899999999965    44555553  


Q ss_pred             -HHcCCceEEEeeccC
Q psy10891         82 -KEHNFIGWTETSTKE   96 (142)
Q Consensus        82 -~~~~~~~~~~~Sa~~   96 (142)
                       ...+ +++++.||..
T Consensus       230 F~~~n-i~~vf~SA~~  244 (562)
T KOG1424|consen  230 FRQNN-IPVVFFSALA  244 (562)
T ss_pred             HHhcC-ceEEEEeccc
Confidence             4445 6688889987

>KOG1532|consensus

Probab=97.64  E-value=0.00038  Score=50.05  Aligned_cols=107  Identities=17%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CCCcchh-hhh------hhHhhh-ccCCEEEEEEeCCC---hhhHHHHHHH-HHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQER-FTW------MTRVYY-KDAHGCIIMFDLTN---QNSFKNTLKW-KKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~-~~~------~~~~~~-~~ad~ii~v~d~~~---~~s~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      |||||-. |..      +++.+. ...-++++++|.-.   +.+|-.---+ ...+       -....|+|+|.||+|+.
T Consensus       122 DTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil-------yktklp~ivvfNK~Dv~  194 (366)
T KOG1532|consen  122 DTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL-------YKTKLPFIVVFNKTDVS  194 (366)
T ss_pred             cCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH-------HhccCCeEEEEeccccc
Confidence            8999765 321      122221 24466777887643   3333221111 1112       12579999999999986


Q ss_pred             CCCCCHHH---HHHH---HH--------------------HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         69 HRQVDIND---IECF---YK--------------------EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        69 ~~~~~~~~---~~~~---~~--------------------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +.....+.   .+.|   ..                    -+..+..+-||+.+|.|.+++|..+...+-+.
T Consensus       195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            62211111   1111   11                    11113477899999999999999987666543

>KOG0461|consensus

Probab=97.64  E-value=0.00031  Score=52.03  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             CCCcchhhhhhhHhhhccC---CEEEEEEeCCChhhHHHHHH-HHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCC
Q psy10891          1 MTEGQERFTWMTRVYYKDA---HGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~   73 (142)
                      |.||+-.   +++..+.+|   |..++|+|+.....-+..+- ++.++         -....|+|.||+|....   .-.
T Consensus        76 DCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~---------~c~klvvvinkid~lpE~qr~sk  143 (522)
T KOG0461|consen   76 DCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL---------LCKKLVVVINKIDVLPENQRASK  143 (522)
T ss_pred             eCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh---------hccceEEEEeccccccchhhhhH
Confidence            6788764   455555444   88899999976532222222 22333         23456888899887651   111


Q ss_pred             -HHHHHHHH---HHcC---CceEEEeeccCC----CCHHHHHHHHHHHHHHHhC
Q psy10891         74 -INDIECFY---KEHN---FIGWTETSTKEG----LMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        74 -~~~~~~~~---~~~~---~~~~~~~Sa~~~----~~i~~l~~~l~~~~~~~~~  116 (142)
                       .+....+.   +..+   ..|++++||.+|    ++|.++...|...+.+.+.
T Consensus       144 i~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  144 IEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             HHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence             11111222   2222   267999999999    6777777777776665443

>KOG0705|consensus

Probab=97.61  E-value=0.00024  Score=55.28  Aligned_cols=100  Identities=12%  Similarity=0.240  Sum_probs=75.5

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHHHHHHHHcCCce
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDIECFYKEHNFIG   88 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~   88 (142)
                      ..+|....|++||||.+.+..+|+.+..+..++.   .+.....+|+++++++.-...   +.+.......++..+.-+-
T Consensus        89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~---~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcs  165 (749)
T KOG0705|consen   89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMS---SYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCS  165 (749)
T ss_pred             hhhhhhhccceEEEEEeccccCHHHHHHHHhhcc---cccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccc
Confidence            4567789999999999999999999888877764   223356789999998843322   3444555555555544455


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         89 WTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        89 ~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +|++++.+|.++..+|..+...++..
T Consensus       166 y~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  166 YYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             eeecchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999998887754

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.58  E-value=0.00036  Score=43.49  Aligned_cols=40  Identities=18%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK   64 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK   64 (142)
                      +..+|++++|+|..++.. .....++..+.        .+.|+++|.||
T Consensus        77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK  116 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK  116 (116)
T ss_dssp             HCTESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred             HHHCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence            378999999999887422 22234444442        47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.57  E-value=0.0002  Score=47.43  Aligned_cols=58  Identities=21%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             CCCcch----hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891          1 MTEGQE----RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKC   65 (142)
Q Consensus         1 Dt~G~e----~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~   65 (142)
                      ||||-.    ....++..|+..+|++|+|.+++...+-.....|.....       .....+++|.||.
T Consensus       107 DtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~-------~~~~~~i~V~nk~  168 (168)
T PF00350_consen  107 DTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD-------PDKSRTIFVLNKA  168 (168)
T ss_dssp             EEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT-------TTCSSEEEEEE-G
T ss_pred             eCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc-------CCCCeEEEEEcCC
Confidence            788843    334678889999999999999998766555556655553       1234489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.56  E-value=0.0017  Score=44.38  Aligned_cols=95  Identities=5%  Similarity=0.004  Sum_probs=57.0

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC-------CCHHHHHHHHHHcCCce
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-------VDINDIECFYKEHNFIG   88 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~   88 (142)
                      ..++|++++|+++++ .+-.+ ...+..+.....  ...-.++++|.|++|.....       .....+..+.+..+.. 
T Consensus        81 ~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r-  155 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR-  155 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe-
Confidence            468899999999987 33222 222333322110  11125789999999975411       1124555566665533 


Q ss_pred             EEEee-----ccCCCCHHHHHHHHHHHHHHHh
Q psy10891         89 WTETS-----TKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        89 ~~~~S-----a~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++.++     +..+.++.+|+..|...+.++.
T Consensus       156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            44443     4566789999999888887643

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG2423|consensus

Probab=97.54  E-value=0.00062  Score=51.27  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             hhhHhhh---ccCCEEEEEEeCCChh-hH-HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc
Q psy10891         10 WMTRVYY---KDAHGCIIMFDLTNQN-SF-KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH   84 (142)
Q Consensus        10 ~~~~~~~---~~ad~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~   84 (142)
                      ++|...|   ..+|++|-|+|+.||. +- ..++.++..        +.+...+|+|.||+||....++...+..+.+++
T Consensus       202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkk--------e~phKHli~vLNKvDLVPtwvt~~Wv~~lSkey  273 (572)
T KOG2423|consen  202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK--------EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEY  273 (572)
T ss_pred             HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhh--------cCCcceeEEEeeccccccHHHHHHHHHHHhhhC
Confidence            3554444   5789999999999984 21 233344332        337788999999999988777788888888888


Q ss_pred             CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         85 NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ..+ -|.-|.....|-..++..+.+..
T Consensus       274 PTi-AfHAsi~nsfGKgalI~llRQf~  299 (572)
T KOG2423|consen  274 PTI-AFHASINNSFGKGALIQLLRQFA  299 (572)
T ss_pred             cce-eeehhhcCccchhHHHHHHHHHH
Confidence            755 45557667677666665554443

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.53  E-value=0.00087  Score=48.10  Aligned_cols=107  Identities=9%  Similarity=0.058  Sum_probs=72.6

Q ss_pred             CCCcchh-------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---
Q psy10891          1 MTEGQER-------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---   70 (142)
Q Consensus         1 Dt~G~e~-------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---   70 (142)
                      ||||-+.       |......++.++|+++++.+..++.--.+.+.|..-+.      ..-+.++++++|.+|....   
T Consensus        93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~------~~~~~~~i~~VtQ~D~a~p~~~  166 (296)
T COG3596          93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVII------LGLDKRVLFVVTQADRAEPGRE  166 (296)
T ss_pred             cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHH------hccCceeEEEEehhhhhccccc
Confidence            8899555       77777888899999999999998753333333333332      1135899999999996431   


Q ss_pred             -----CCCHHH-----------HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         71 -----QVDIND-----------IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        71 -----~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                           ......           +..+++.  ..|++.++...+-|++.+...+++.+....
T Consensus       167 W~~~~~~p~~a~~qfi~~k~~~~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         167 WDSAGHQPSPAIKQFIEEKAEALGRLFQE--VKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHhh--cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence                 011111           1222233  257888899999999999999998887443

>KOG0460|consensus

Probab=97.51  E-value=0.00032  Score=51.76  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=65.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC----CCCCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH----RQVDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~----~~~~~~   75 (142)
                      |.||+-+|-..+=.-...-|++|+|+..+|.+--+.-+.++..- +       -+++ +++..||.|+.+    ..+-+-
T Consensus       123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLAr-Q-------VGV~~ivvfiNKvD~V~d~e~leLVEm  194 (449)
T KOG0460|consen  123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLAR-Q-------VGVKHIVVFINKVDLVDDPEMLELVEM  194 (449)
T ss_pred             CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHH-H-------cCCceEEEEEecccccCCHHHHHHHHH
Confidence            88999999876655556789999999999964333323332221 1       2455 788899999874    122344


Q ss_pred             HHHHHHHHcCC----ceEEEe---eccCCCC-------HHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF----IGWTET---STKEGLM-------VNDSMKFLLDVLM  112 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~---Sa~~~~~-------i~~l~~~l~~~~~  112 (142)
                      +++++...+|+    .|++.=   ||..+.+       |..|++.+-.++.
T Consensus       195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip  245 (449)
T KOG0460|consen  195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP  245 (449)
T ss_pred             HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence            56667888887    467754   4555532       4444444444443

>smart00053 DYNc Dynamin, GTPase

Probab=97.46  E-value=0.00041  Score=49.11  Aligned_cols=53  Identities=17%  Similarity=0.114  Sum_probs=35.4

Q ss_pred             hhhHhhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         10 WMTRVYYK-DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        10 ~~~~~~~~-~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      .+...|++ ..+++++|+|++...+-.+...+...+.       ..+.++++|+||+|..+
T Consensus       153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld-------~~~~rti~ViTK~D~~~  206 (240)
T smart00053      153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD-------PQGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH-------HcCCcEEEEEECCCCCC
Confidence            45677887 4569999998865433223223333332       24789999999999875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.35  E-value=0.00053  Score=46.78  Aligned_cols=54  Identities=22%  Similarity=0.153  Sum_probs=40.8

Q ss_pred             EEEEEeCCCCCC-CCCCHHHHHHHHHHc-CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         58 CMLLANKCDLPH-RQVDINDIECFYKEH-NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        58 ~ilv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      -++|+||.|+.+ -..+.+....-++.. +-.|++++|+++|+|+++++.++....
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            489999999976 333445555555543 446799999999999999999887654

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.34  E-value=0.00022  Score=53.90  Aligned_cols=64  Identities=20%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      |++||...+.-|-.++.++++||||+++++-          ..+.+.-.++..+.   +...-.+.|+||+.||.|+
T Consensus       242 DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~---~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  242 DVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC---NNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH---TSGGGTTSEEEEEEE-HHH
T ss_pred             cCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH---hCcccccCceEEeeecHHH
Confidence            7899999999999999999999999998631          12333334445553   3223358999999999996

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.31  E-value=0.00056  Score=49.63  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             CCCEEEEEeCCCCCCC-CCCHHHHHH-HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPHR-QVDINDIEC-FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~-~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ...-++|+||+|+... ....+.... +.......+++.+|++++.|+++++++|...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4667999999999651 112222323 3333445679999999999999999999764

>KOG2484|consensus

Probab=97.17  E-value=0.0012  Score=49.58  Aligned_cols=70  Identities=14%  Similarity=0.070  Sum_probs=45.7

Q ss_pred             hhhhhHhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891          8 FTWMTRVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN   85 (142)
Q Consensus         8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~   85 (142)
                      |..-....+..+|+||-|.|+.||.+-.  .++.|+...        ..+...|||.||+|+..+.+....+.-+..++.
T Consensus       136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~--------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p  207 (435)
T KOG2484|consen  136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA--------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGP  207 (435)
T ss_pred             HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc--------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence            3344455667899999999999996433  345554332        145889999999999764444444443444443

>KOG3905|consensus

Probab=97.04  E-value=0.0082  Score=44.38  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             CCCCCEEEEEeCCCCCC--------CCC----CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         53 GSPIPCMLLANKCDLPH--------RQV----DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        53 ~~~~p~ilv~nK~D~~~--------~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .-++|+++|++|||...        +..    -...++.||-.+|.. .+++|++...|++-+...|+..+.
T Consensus       220 NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  220 NLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             cCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHHHHHHhc
Confidence            35799999999999732        111    123456678888854 899999999999877766666554

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.90  E-value=0.00068  Score=48.30  Aligned_cols=86  Identities=13%  Similarity=0.096  Sum_probs=51.8

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC-----C-ceE
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN-----F-IGW   89 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~-~~~   89 (142)
                      ..-+|.+++|.-..-....+.++.=+.+            +.-|+|+||.|.........++........     + .|+
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV  207 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIKAGIME------------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPV  207 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-TTHHH------------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EE
T ss_pred             HHhcCeEEEEecCCCccHHHHHhhhhhh------------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCE
Confidence            4568999999988765555443332223            344899999996431122223333322211     1 479


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         90 TETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        90 ~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +.+||.++.|++++++.|..+.-.
T Consensus       208 ~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  208 LKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999875543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1143|consensus

Probab=96.90  E-value=0.007  Score=45.53  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             CCCcchhhhhhhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC-----
Q psy10891          1 MTEGQERFTWMTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD-----   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-----   73 (142)
                      |.||+.+|.+++-.-+  -..|.+.+|+.++..-+...-+. +..+.       +-++|+.++.+|+|+..+.-.     
T Consensus       255 DLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~-------AL~iPfFvlvtK~Dl~~~~~~~~tv~  326 (591)
T KOG1143|consen  255 DLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIA-------ALNIPFFVLVTKMDLVDRQGLKKTVK  326 (591)
T ss_pred             ecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHH-------HhCCCeEEEEEeeccccchhHHHHHH
Confidence            7899999998653222  24688888888876544433222 22221       138999999999998653111     


Q ss_pred             --------------------HHHHHHH---HHHcCCceEEEeeccCCCCHHHH
Q psy10891         74 --------------------INDIECF---YKEHNFIGWTETSTKEGLMVNDS  103 (142)
Q Consensus        74 --------------------~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~l  103 (142)
                                          ..+....   +..-++.|+|.+|..+|+|+.-+
T Consensus       327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                                1111111   12223467899999999997643

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.86  E-value=0.012  Score=42.90  Aligned_cols=89  Identities=12%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH-------HHHcCC-c
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF-------YKEHNF-I   87 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-------~~~~~~-~   87 (142)
                      ..-+|.+++|.-..-....+.++   ..++         .+--|+|+||.|.........++...       ....++ .
T Consensus       162 ~~~aDt~~~v~~pg~GD~~Q~iK---~Gim---------EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~p  229 (323)
T COG1703         162 ANMADTFLVVMIPGAGDDLQGIK---AGIM---------EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRP  229 (323)
T ss_pred             hhhcceEEEEecCCCCcHHHHHH---hhhh---------hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCC
Confidence            35678888877665444444333   3332         34458999999965411111111111       111222 4


Q ss_pred             eEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         88 GWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        88 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      |++.+||..++|+++|++.+..+......
T Consensus       230 pv~~t~A~~g~Gi~~L~~ai~~h~~~~~~  258 (323)
T COG1703         230 PVVTTSALEGEGIDELWDAIEDHRKFLTE  258 (323)
T ss_pred             ceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999988765543

>KOG0466|consensus

Probab=96.81  E-value=0.0023  Score=46.85  Aligned_cols=103  Identities=9%  Similarity=0.049  Sum_probs=65.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---C
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---D   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~   73 (142)
                      |.||++-...++---..=.|++++++..+.    |.+.+.+..  -+++        .=..++++-||+|+..+..   .
T Consensus       131 DCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM--------~LkhiiilQNKiDli~e~~A~eq  200 (466)
T KOG0466|consen  131 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM--------KLKHIIILQNKIDLIKESQALEQ  200 (466)
T ss_pred             cCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh--------hhceEEEEechhhhhhHHHHHHH
Confidence            788888765543222223477777776654    345554332  2333        2357899999999976322   2


Q ss_pred             HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .+.+..|.+..  ...|++.+||.-..||+-+.+.|++.+.-
T Consensus       201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            33344443322  12579999999999999999998888754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.74  E-value=0.019  Score=43.98  Aligned_cols=86  Identities=8%  Similarity=0.023  Sum_probs=52.2

Q ss_pred             Hhhhc-cCCEEEEEE-eCCC----hhhH-HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891         13 RVYYK-DAHGCIIMF-DLTN----QNSF-KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN   85 (142)
Q Consensus        13 ~~~~~-~ad~ii~v~-d~~~----~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~   85 (142)
                      ...+. ++|+.|+|. |.+-    +..+ ..-..|+.++..       .++|+|+|.||+|-.. ..+.+....+...++
T Consensus       138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~-------~~kPfiivlN~~dp~~-~et~~l~~~l~eky~  209 (492)
T TIGR02836       138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE-------LNKPFIILLNSTHPYH-PETEALRQELEEKYD  209 (492)
T ss_pred             HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh-------cCCCEEEEEECcCCCC-chhHHHHHHHHHHhC
Confidence            44555 899999998 6630    1122 223467777742       4799999999999432 224444556666777


Q ss_pred             CceEEEeeccCC--CCHHHHHHHH
Q psy10891         86 FIGWTETSTKEG--LMVNDSMKFL  107 (142)
Q Consensus        86 ~~~~~~~Sa~~~--~~i~~l~~~l  107 (142)
                       .|++.+|+..-  ..|..++..+
T Consensus       210 -vpvl~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       210 -VPVLAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             -CceEEEEHHHcCHHHHHHHHHHH
Confidence             56777777543  2444444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0099|consensus

Probab=96.74  E-value=0.0068  Score=43.51  Aligned_cols=64  Identities=20%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      |++||..-+.-|=+++.+..++|||+..+.-          ..+...-.++..+.   +..=...+.+||..||.|+
T Consensus       208 DVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiW---nNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  208 DVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIW---NNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             ccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHH---hhhHHhhhheeEEecHHHH
Confidence            7899999999999999999999999988631          11112122333332   1111246789999999997

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.71  E-value=0.019  Score=38.53  Aligned_cols=77  Identities=16%  Similarity=0.087  Sum_probs=50.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||...  ......+..+|.+++++..+. .+...+..+++.+..       .+.|+.+|.||+|...  .....+..+
T Consensus        99 Dtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~-------~~~~~~vV~N~~~~~~--~~~~~~~~~  166 (179)
T cd03110          99 DGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH-------FGIPVGVVINKYDLND--EIAEEIEDY  166 (179)
T ss_pred             ECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH-------cCCCEEEEEeCCCCCc--chHHHHHHH
Confidence            6775432  233456688999999998874 466666666666542       2467889999998643  234556667


Q ss_pred             HHHcCCceEE
Q psy10891         81 YKEHNFIGWT   90 (142)
Q Consensus        81 ~~~~~~~~~~   90 (142)
                      ++.+++ +++
T Consensus       167 ~~~~~~-~vl  175 (179)
T cd03110         167 CEEEGI-PIL  175 (179)
T ss_pred             HHHcCC-CeE
Confidence            777773 343

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG0467|consensus

Probab=96.67  E-value=0.0033  Score=50.80  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=43.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      |+|||-+|.+...+..+=+|++++++|+......+... .+.+..       ..+..++||.||+|.
T Consensus        78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~-------~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW-------IEGLKPILVINKIDR  136 (887)
T ss_pred             cCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH-------HccCceEEEEehhhh
Confidence            89999999999999999999999999998754333221 122111       045677999999994

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=96.39  E-value=0.015  Score=42.89  Aligned_cols=51  Identities=25%  Similarity=0.419  Sum_probs=40.9

Q ss_pred             CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      -+|.|.|.||+|+..    .+....+.+..   .++.+||+.+-|+++|...|...+.
T Consensus       239 Y~p~l~v~NKiD~~~----~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         239 YKPALYVVNKIDLPG----LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             eeeeEEEEecccccC----HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence            589999999999854    44555555444   4889999999999999999988774

>KOG0463|consensus

Probab=96.17  E-value=0.017  Score=43.55  Aligned_cols=96  Identities=11%  Similarity=0.012  Sum_probs=51.4

Q ss_pred             CCCcchhhhhhhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH---
Q psy10891          1 MTEGQERFTWMTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN---   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~---   75 (142)
                      |.||+|+|..++-.-+  .-.|...+++-.+-.. ....++-+...       ..-.+|+.+|.+|+|.-...+..+   
T Consensus       225 DLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLA-------LaL~VPVfvVVTKIDMCPANiLqEtmK  296 (641)
T KOG0463|consen  225 DLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLA-------LALHVPVFVVVTKIDMCPANILQETMK  296 (641)
T ss_pred             eccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhh-------hhhcCcEEEEEEeeccCcHHHHHHHHH
Confidence            7899999987642222  3456666766554321 11111111111       113688888888888643112122   


Q ss_pred             HHHHHHHHc-------------------------CCceEEEeeccCCCCHHHHH
Q psy10891         76 DIECFYKEH-------------------------NFIGWTETSTKEGLMVNDSM  104 (142)
Q Consensus        76 ~~~~~~~~~-------------------------~~~~~~~~Sa~~~~~i~~l~  104 (142)
                      .+..+.+.-                         ..+|+|.+|-.+|.++.-+.
T Consensus       297 ll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  297 LLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             HHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence            222222221                         22678899999999986443

>KOG2486|consensus

Probab=96.09  E-value=0.005  Score=44.39  Aligned_cols=96  Identities=14%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             chhhhhhhHhhhc---cCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHH-
Q psy10891          5 QERFTWMTRVYYK---DAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDIN-   75 (142)
Q Consensus         5 ~e~~~~~~~~~~~---~ad~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~-   75 (142)
                      -+.+..++..|+-   +.-.+++++|++.+.  +-...-.|+.+          .++|+.+|.||||...   +.-... 
T Consensus       203 ~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge----------~~VP~t~vfTK~DK~k~~~~~~kKp~  272 (320)
T KOG2486|consen  203 PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE----------NNVPMTSVFTKCDKQKKVKRTGKKPG  272 (320)
T ss_pred             cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh----------cCCCeEEeeehhhhhhhccccccCcc
Confidence            4456666777763   334456677776542  33333456555          4899999999999754   111111 


Q ss_pred             -HHHHHHHHcC------CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         76 -DIECFYKEHN------FIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        76 -~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                       .+........      ..|++.+|+.++.|++.|+-.+...
T Consensus       273 ~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  273 LNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence             1111111111      1457789999999999887665543

>KOG3886|consensus

Probab=95.85  E-value=0.13  Score=36.49  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             CCCcchhhhh-----hhHhhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTW-----MTRVYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~-----~~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |.+|||.|..     .....+++.+++++|||+...+-..++.   .-++.+.+++     +...+....+|.|+..
T Consensus        59 DcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-----P~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   59 DCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-----PEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             ccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-----CcceEEEEEeechhcc
Confidence            6788885432     3456788999999999998765444433   4445554433     6677888899999965

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.67  E-value=0.21  Score=33.63  Aligned_cols=90  Identities=16%  Similarity=0.075  Sum_probs=62.6

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..|.|+|++|.....|+..++.-+..+....   - -+.-++++-|=.......+....+..++.++. .|++++--...
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f---f-lGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~-~plL~~~le~~  138 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF---F-LGKVCFLATNAGRESHCSVHPNEVRKLAATYN-SPLLFADLENE  138 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhh---h-ccceEEEEcCCCcccccccCHHHHHHHHHHhC-CCEEEeecccc
Confidence            5799999999999999998876665553111   1 24444444443333226788999999999998 67998887777


Q ss_pred             CCHHHHHHHHHHHHH
Q psy10891         98 LMVNDSMKFLLDVLM  112 (142)
Q Consensus        98 ~~i~~l~~~l~~~~~  112 (142)
                      ++...+=..|.+.+-
T Consensus       139 ~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  139 EGRTSLAQRLLRMLQ  153 (176)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            776666666666554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG0465|consensus

Probab=95.66  E-value=0.062  Score=42.81  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+-+|.--.+..++-.|++++|++......-+..-.|...-+        -++|.|..+||.|.-.. -.-..++++
T Consensus       110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--------y~vP~i~FiNKmDRmGa-~~~~~l~~i  180 (721)
T KOG0465|consen  110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--------YNVPRICFINKMDRMGA-SPFRTLNQI  180 (721)
T ss_pred             cCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--------cCCCeEEEEehhhhcCC-ChHHHHHHH
Confidence            899999999888889999999999999876543333345643321        47999999999997552 233344455


Q ss_pred             HHHcC
Q psy10891         81 YKEHN   85 (142)
Q Consensus        81 ~~~~~   85 (142)
                      ...++
T Consensus       181 ~~kl~  185 (721)
T KOG0465|consen  181 RTKLN  185 (721)
T ss_pred             HhhcC
Confidence            55444

>KOG0448|consensus

Probab=95.59  E-value=0.13  Score=41.51  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=38.9

Q ss_pred             CCCcc---hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQ---ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~---e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      |.||.   .....-...++.++|++|||....+..+.... .++....   +    .+..+.++.||+|...
T Consensus       212 DsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs---~----~KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  212 DSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVS---E----EKPNIFILNNKWDASA  275 (749)
T ss_pred             cCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhh---c----cCCcEEEEechhhhhc
Confidence            55662   22333456778899999999998876555543 3333332   1    2455788889999864

>KOG0410|consensus

Probab=95.44  E-value=0.019  Score=42.48  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=56.4

Q ss_pred             hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC----CEEEEEeCCCCCCCCCCHHHHHHHHHH
Q psy10891          8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI----PCMLLANKCDLPHRQVDINDIECFYKE   83 (142)
Q Consensus         8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----p~ilv~nK~D~~~~~~~~~~~~~~~~~   83 (142)
                      |..+.+ -+..+|+++.|.|+++|..-......+.-+.    .-.-+..    .+|=|-||+|..+.....         
T Consensus       248 F~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~----~igv~~~pkl~~mieVdnkiD~e~~~~e~---------  313 (410)
T KOG0410|consen  248 FQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLN----QIGVPSEPKLQNMIEVDNKIDYEEDEVEE---------  313 (410)
T ss_pred             HHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHH----hcCCCcHHHHhHHHhhccccccccccCcc---------
Confidence            443333 3468999999999999865444333332221    1111222    256678888875411111         


Q ss_pred             cCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         84 HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .... .+.+||++|.|.++++..+-..+....
T Consensus       314 E~n~-~v~isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  314 EKNL-DVGISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             ccCC-ccccccccCccHHHHHHHHHHHhhhhh
Confidence            1112 667899999999999988877766544

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=95.40  E-value=0.045  Score=42.62  Aligned_cols=58  Identities=21%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             CCCEEEEEeCCCCCC-----CC-------CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPH-----RQ-------VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++|+++|++|+|...     ..       .-...++.+|-.+|.. .++||++...+++-|+..|...+..
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~yi~h~l~~  265 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKYILHRLYG  265 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHHHHHHhcc
Confidence            589999999999632     11       1223356677788844 8889999999998777776666554

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0085|consensus

Probab=95.18  E-value=0.02  Score=40.51  Aligned_cols=113  Identities=17%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      |++||..-++-|-.++.+.-.++|++.++          +....+....++.-+.   .+.=-.+.++|+..||.|+.+.
T Consensus       205 DvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi---~yPWF~nssVIlFLNKkDlLEe  281 (359)
T KOG0085|consen  205 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII---TYPWFQNSSVILFLNKKDLLEE  281 (359)
T ss_pred             ecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh---ccccccCCceEEEechhhhhhh
Confidence            67888877777777777777666665543          2222233333444333   2212257899999999998541


Q ss_pred             C-----------------CCHHHHHHH----HHHcCC-----ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         71 Q-----------------VDINDIECF----YKEHNF-----IGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        71 ~-----------------~~~~~~~~~----~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      .                 .+.+....+    ....+.     ..--+++|.+-+||.-+|..+...++...-
T Consensus       282 kI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  282 KILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            1                 122222222    112221     112368999999999999999988887653

>KOG0464|consensus

Probab=95.18  E-value=0.0036  Score=47.66  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=56.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+-+|.--.+.+++-.|+++.|||.+-...-+.+-.|..        ...-++|-+...||.|.... --......+
T Consensus       108 dtpghvdf~leverclrvldgavav~dasagve~qtltvwrq--------adk~~ip~~~finkmdk~~a-nfe~avdsi  178 (753)
T KOG0464|consen  108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ--------ADKFKIPAHCFINKMDKLAA-NFENAVDSI  178 (753)
T ss_pred             cCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh--------ccccCCchhhhhhhhhhhhh-hhhhHHHHH
Confidence            899999999999999999999999999986544444446733        34468898999999997651 112233444


Q ss_pred             HHHcCCce
Q psy10891         81 YKEHNFIG   88 (142)
Q Consensus        81 ~~~~~~~~   88 (142)
                      .+.++..+
T Consensus       179 ~ekl~ak~  186 (753)
T KOG0464|consen  179 EEKLGAKA  186 (753)
T ss_pred             HHHhCCce
Confidence            55555443

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=95.10  E-value=0.12  Score=35.83  Aligned_cols=93  Identities=6%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             hccCCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC--------HHHHHHHHHHcC
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD--------INDIECFYKEHN   85 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------~~~~~~~~~~~~   85 (142)
                      ..+.|++++|+.++. .+-.+.  -.++..+.   .  ...-..++||.|..|.......        ...+..+.+..+
T Consensus        81 ~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~F---G--~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGR-FTEEDREVLELLQEIF---G--EEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             TT-ESEEEEEEETTB--SHHHHHHHHHHHHHH---C--GGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEEEEecCc-chHHHHHHHHHHHHHc---c--HHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence            467899999999983 333222  23333332   0  0112458888898886542211        123555667777


Q ss_pred             CceEEEeecc------CCCCHHHHHHHHHHHHHHHh
Q psy10891         86 FIGWTETSTK------EGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        86 ~~~~~~~Sa~------~~~~i~~l~~~l~~~~~~~~  115 (142)
                      . .|..+..+      ....+.+|+..+-.++.++.
T Consensus       155 ~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  155 G-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             T-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            4 36666555      33467888888777776664

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG2485|consensus

Probab=94.94  E-value=0.13  Score=37.78  Aligned_cols=83  Identities=17%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEE
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTE   91 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   91 (142)
                      ++.-+...|++|=|-|+.-|.|...  ..+..+.        +..|-|+|.||+||.+.......++.+....... ++.
T Consensus        40 i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~--------~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~-~~~  108 (335)
T KOG2485|consen   40 IQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL--------PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLES-YIK  108 (335)
T ss_pred             HHhhcccccEEEEeeccccCCcccc--HHHHHhc--------CCCceEEEEecccccCchhhhHHHHHHHhhcccc-hhh
Confidence            3455678899999999999877665  2333332        4788999999999977444555566555553323 444


Q ss_pred             eeccCCCC--HHHHHH
Q psy10891         92 TSTKEGLM--VNDSMK  105 (142)
Q Consensus        92 ~Sa~~~~~--i~~l~~  105 (142)
                      .++....+  +..++.
T Consensus       109 ~~c~~~~~~~v~~l~~  124 (335)
T KOG2485|consen  109 LDCNKDCNKQVSPLLK  124 (335)
T ss_pred             hhhhhhhhhccccHHH
Confidence            44433332  444443

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=94.60  E-value=0.26  Score=36.37  Aligned_cols=66  Identities=6%  Similarity=-0.001  Sum_probs=35.3

Q ss_pred             CCCcchhhhhhh-------Hhhh--ccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMT-------RVYY--KDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~-------~~~~--~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||......+.       ..+.  .+.|+++||..++... +... ...+..+.....  ..--.++|+|.|++|...
T Consensus        92 DTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG--~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991        92 DTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFG--KDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             ECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhh--hhhhccEEEEEECCccCC
Confidence            899976543322       1111  2689999996654321 1111 223333332210  112357899999999763

>KOG1954|consensus

Probab=94.54  E-value=0.088  Score=39.81  Aligned_cols=52  Identities=13%  Similarity=0.161  Sum_probs=36.1

Q ss_pred             hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ..+=+...+|.|+++||.....-.+.....+..+.       +..-.+-+|.||.|..+
T Consensus       174 v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk-------G~EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  174 VLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK-------GHEDKIRVVLNKADQVD  225 (532)
T ss_pred             HHHHHHHhccEEEEEechhhccccHHHHHHHHHhh-------CCcceeEEEeccccccC
Confidence            44566789999999999876554455555666663       23345678899999755

>KOG0447|consensus

Probab=94.39  E-value=0.57  Score=37.43  Aligned_cols=68  Identities=13%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCCHHHHHHHH
Q psy10891          8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVDINDIECFY   81 (142)
Q Consensus         8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~   81 (142)
                      ...|...|+.+.+++|+|+--.   |.+.-+...-.+-   ..-.+.+...|+|.+|.|+.+. -..+..+..+.
T Consensus       438 I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLV---sq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIl  506 (980)
T KOG0447|consen  438 IFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLV---SQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQII  506 (980)
T ss_pred             HHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHH---HhcCCCCCeeEEEEeecchhhhccCCHHHHHHHH
Confidence            4457789999999999998432   2333222222222   1225567889999999999773 34556666554

>KOG3887|consensus

Probab=94.27  E-value=0.71  Score=33.13  Aligned_cols=109  Identities=13%  Similarity=0.136  Sum_probs=61.0

Q ss_pred             CCCcchhhhhh---hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCH
Q psy10891          1 MTEGQERFTWM---TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~---~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~   74 (142)
                      |.|||-.|-.-   -+..+++.-++|||+|+.+.. .+.+..+..-+.+  .+.-.+++.+=+...|.|-..   +..+.
T Consensus        81 dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~r--aykvNp~in~EVfiHKvDGLsdd~kietq  157 (347)
T KOG3887|consen   81 DFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVER--AYKVNPNINFEVFIHKVDGLSDDFKIETQ  157 (347)
T ss_pred             ecCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhh--eeecCCCceEEEEEEeccCCchhhhhhhH
Confidence            56787665433   356788999999999997642 1222233333321  122347888888999999765   11111


Q ss_pred             HHHHHH----HHHcCC----ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         75 NDIECF----YKEHNF----IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        75 ~~~~~~----~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..+.+.    ....|.    ..|+.+|..+ ..|-+.|.++++.+..
T Consensus       158 rdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLip  203 (347)
T KOG3887|consen  158 RDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIP  203 (347)
T ss_pred             HHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhh
Confidence            111111    112221    2255666655 4677777777766543

>KOG0459|consensus

Probab=94.04  E-value=0.041  Score=41.84  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=58.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH---
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI---   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---   74 (142)
                      |+||+.-|-..+=.-..+||+.++|+++....   -|+.-..-.+..+-+   ....-...|++.||.|...-..+.   
T Consensus       163 DApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La---kt~gv~~lVv~vNKMddPtvnWs~eRy  239 (501)
T KOG0459|consen  163 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA---KTAGVKHLIVLINKMDDPTVNWSNERY  239 (501)
T ss_pred             ccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH---HhhccceEEEEEEeccCCccCcchhhH
Confidence            78888888765544556899999999875321   111100001111000   011335579999999976511122   


Q ss_pred             ----HHHHHHHHHcCC-----ceEEEeeccCCCCHHHHHH
Q psy10891         75 ----NDIECFYKEHNF-----IGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        75 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  105 (142)
                          +.+..+....|+     ..|+.||..+|.++.+...
T Consensus       240 ~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  240 EECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             HHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                223334444443     2388999999999887664

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.79  E-value=0.64  Score=33.65  Aligned_cols=73  Identities=14%  Similarity=0.047  Sum_probs=43.1

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..|.+++|+|++...  +.+. +...+.+.      -+ +.-+|.||.|...+   .-.+..+....+ .|+.+++  +|
T Consensus       190 ~~~~~~LVl~a~~~~--~~~~-~~~~f~~~------~~-~~g~IlTKlDe~~~---~G~~l~~~~~~~-~Pi~~~~--~G  253 (272)
T TIGR00064       190 APDEVLLVLDATTGQ--NALE-QAKVFNEA------VG-LTGIILTKLDGTAK---GGIILSIAYELK-LPIKFIG--VG  253 (272)
T ss_pred             CCceEEEEEECCCCH--HHHH-HHHHHHhh------CC-CCEEEEEccCCCCC---ccHHHHHHHHHC-cCEEEEe--CC
Confidence            489999999997532  2222 22222211      11 35778999997431   223334455556 6788877  88


Q ss_pred             CCHHHHHHH
Q psy10891         98 LMVNDSMKF  106 (142)
Q Consensus        98 ~~i~~l~~~  106 (142)
                      ++++++...
T Consensus       254 q~~~dl~~~  262 (272)
T TIGR00064       254 EKIDDLAPF  262 (272)
T ss_pred             CChHhCccC
Confidence            888776543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0469|consensus

Probab=93.75  E-value=0.066  Score=42.00  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=42.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      |.||+-+|++-....++=.|++++|+|.-+..-.+. +..+.+.       ..+++.-+++.||.|.
T Consensus       104 DSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA-------~~ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen  104 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQA-------IAERIKPVLVMNKMDR  162 (842)
T ss_pred             cCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHH-------HHhhccceEEeehhhH
Confidence            789999999999999999999999999976532221 1122111       1145556789999994

>PRK14974 cell division protein FtsY; Provisional

Probab=93.67  E-value=0.85  Score=34.12  Aligned_cols=78  Identities=12%  Similarity=-0.060  Sum_probs=44.2

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..|.+++|+|+.......   .....+...      .+ .--+|.||.|...+   .-.+-.++...+ .|+.+++  +|
T Consensus       252 ~pd~~iLVl~a~~g~d~~---~~a~~f~~~------~~-~~giIlTKlD~~~~---~G~~ls~~~~~~-~Pi~~i~--~G  315 (336)
T PRK14974        252 KPDLVIFVGDALAGNDAV---EQAREFNEA------VG-IDGVILTKVDADAK---GGAALSIAYVIG-KPILFLG--VG  315 (336)
T ss_pred             CCceEEEeeccccchhHH---HHHHHHHhc------CC-CCEEEEeeecCCCC---ccHHHHHHHHHC-cCEEEEe--CC
Confidence            578999999987643211   112222100      12 34678999997541   122233344455 6788887  89


Q ss_pred             CCHHHHHHHHHHHH
Q psy10891         98 LMVNDSMKFLLDVL  111 (142)
Q Consensus        98 ~~i~~l~~~l~~~~  111 (142)
                      ++++++...=...+
T Consensus       316 q~v~Dl~~~~~~~~  329 (336)
T PRK14974        316 QGYDDLIPFDPDWF  329 (336)
T ss_pred             CChhhcccCCHHHH
Confidence            99988765433333

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=93.60  E-value=0.86  Score=33.80  Aligned_cols=73  Identities=15%  Similarity=0.075  Sum_probs=43.0

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..+.+++|+|++...  ..+... .....       .--+.-+|.||.|...+   .-.+..++...+ .|+.+++  +|
T Consensus       232 ~p~~~~LVl~a~~g~--~~~~~a-~~f~~-------~~~~~giIlTKlD~t~~---~G~~l~~~~~~~-~Pi~~v~--~G  295 (318)
T PRK10416        232 APHEVLLVLDATTGQ--NALSQA-KAFHE-------AVGLTGIILTKLDGTAK---GGVVFAIADELG-IPIKFIG--VG  295 (318)
T ss_pred             CCceEEEEEECCCCh--HHHHHH-HHHHh-------hCCCCEEEEECCCCCCC---ccHHHHHHHHHC-CCEEEEe--CC
Confidence            467889999998542  222221 12210       11244788999995432   223334556666 6788888  88


Q ss_pred             CCHHHHHHH
Q psy10891         98 LMVNDSMKF  106 (142)
Q Consensus        98 ~~i~~l~~~  106 (142)
                      ++++++-..
T Consensus       296 q~~~Dl~~~  304 (318)
T PRK10416        296 EGIDDLQPF  304 (318)
T ss_pred             CChhhCccC
Confidence            888777543

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=93.36  E-value=0.44  Score=30.65  Aligned_cols=59  Identities=10%  Similarity=0.078  Sum_probs=37.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      |||+.-  .......+..+|.++++.+.+ ..++......++.+....     ...++.+|.|+++.
T Consensus        51 D~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-----~~~~~~lVvN~~~~  109 (139)
T cd02038          51 DTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-----RVLNFRVVVNRAES  109 (139)
T ss_pred             ECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-----CCCCEEEEEeCCCC
Confidence            566532  333456788999999999876 345555444444443211     34577899999874

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=92.46  E-value=1.6  Score=31.71  Aligned_cols=62  Identities=19%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891         13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI   87 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~   87 (142)
                      -..+.++|.+|+|-..+- -.+.+++..++.+.+       -++|..+|.||.+...    . .++.++.+.++.
T Consensus       180 i~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~-------f~ip~~iViNr~~~g~----s-~ie~~~~e~gi~  241 (284)
T COG1149         180 IASLKGADLAILVTEPTP-FGLHDLKRALELVEH-------FGIPTGIVINRYNLGD----S-EIEEYCEEEGIP  241 (284)
T ss_pred             HHhhccCCEEEEEecCCc-cchhHHHHHHHHHHH-------hCCceEEEEecCCCCc----h-HHHHHHHHcCCC
Confidence            446789999999998873 455666666655543       3799999999996532    2 778899998853

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=92.38  E-value=0.49  Score=33.63  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=39.8

Q ss_pred             CcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCC-CCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891          3 EGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCMLLANKCDLPHRQVDINDIECFY   81 (142)
Q Consensus         3 ~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~~~~~~~~~~~~~   81 (142)
                      ||.|-|.   +...+++|.+|+|+|.+-. |+...+...+.. .      .-+ .++.+|+||.|-.     ...+...+
T Consensus       143 AGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~-~------elg~k~i~~V~NKv~e~-----e~~~~~~~  206 (255)
T COG3640         143 AGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELA-E------ELGIKRIFVVLNKVDEE-----EELLRELA  206 (255)
T ss_pred             cchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHH-H------HhCCceEEEEEeeccch-----hHHHHhhh
Confidence            4555444   3356799999999998753 444333322222 1      124 7899999999852     33444455


Q ss_pred             HHcC
Q psy10891         82 KEHN   85 (142)
Q Consensus        82 ~~~~   85 (142)
                      ...+
T Consensus       207 ~~~~  210 (255)
T COG3640         207 EELG  210 (255)
T ss_pred             hccC
Confidence            5555

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=91.95  E-value=0.54  Score=33.90  Aligned_cols=48  Identities=17%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             cCCEEEEEEeCCChhhHH----HHH-------HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         18 DAHGCIIMFDLTNQNSFK----NTL-------KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~----~~~-------~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      -.+|||+++|+.+-...+    .+.       .-+.++.    ..-...+|+-+|.||+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~----~~lg~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQ----RTLGVRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHH----HHhCCCCCeEeeeECCCccc
Confidence            469999999997532111    112       2223332    12346899999999999876

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=91.43  E-value=1.9  Score=30.82  Aligned_cols=49  Identities=4%  Similarity=-0.023  Sum_probs=26.5

Q ss_pred             cCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         18 DAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ..|++++|..++... +..+ ...+..+.....  ..--.++++|.|++|...
T Consensus       114 ~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG--~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         114 TPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFG--PSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             CCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhC--hhhHhCEEEEEeCCccCC
Confidence            678888887665431 2221 123333332110  011257899999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=91.08  E-value=0.55  Score=40.80  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=32.5

Q ss_pred             cCCEEEEEEeCCChhhH---------HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         18 DAHGCIIMFDLTNQNSF---------KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      -.++||+++|+.+-.+.         ..++.-+.++...    -...+|+-+|.||+|+..
T Consensus       201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~----lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ----LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH----hCCCCCEEEEEecchhhc
Confidence            57999999999754211         1233444444322    236899999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=91.02  E-value=1.2  Score=27.19  Aligned_cols=57  Identities=14%  Similarity=0.074  Sum_probs=35.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCC-CCCEEEEEeC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGS-PIPCMLLANK   64 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~p~ilv~nK   64 (142)
                      |||+.-.  ......+..+|.++++.+.+ +.+......++..+...    ..+ ...+.+|+|+
T Consensus        49 Dtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~----~~~~~~~~~lVvNr  106 (106)
T cd03111          49 DLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVL----DYSLPAKIELVLNR  106 (106)
T ss_pred             eCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHc----CCCCcCceEEEecC
Confidence            6666432  23445678899999999765 45777777776666421    222 3456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=90.84  E-value=1.7  Score=29.81  Aligned_cols=70  Identities=11%  Similarity=0.031  Sum_probs=39.6

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..+-+++|.+++....  .+..+..... .      -+ +-=++.||.|...   ..-.+-.++...+ .|+-++|  +|
T Consensus       113 ~~~~~~LVlsa~~~~~--~~~~~~~~~~-~------~~-~~~lIlTKlDet~---~~G~~l~~~~~~~-~Pi~~it--~G  176 (196)
T PF00448_consen  113 NPDEVHLVLSATMGQE--DLEQALAFYE-A------FG-IDGLILTKLDETA---RLGALLSLAYESG-LPISYIT--TG  176 (196)
T ss_dssp             SSSEEEEEEEGGGGGH--HHHHHHHHHH-H------SS-TCEEEEESTTSSS---TTHHHHHHHHHHT-SEEEEEE--SS
T ss_pred             CCccceEEEecccChH--HHHHHHHHhh-c------cc-CceEEEEeecCCC---CcccceeHHHHhC-CCeEEEE--CC
Confidence            5788889998876532  2222222221 1      12 2245699999643   3344555666667 5677766  66


Q ss_pred             CCHHHH
Q psy10891         98 LMVNDS  103 (142)
Q Consensus        98 ~~i~~l  103 (142)
                      ++|+++
T Consensus       177 q~V~Dl  182 (196)
T PF00448_consen  177 QRVDDL  182 (196)
T ss_dssp             SSTTGE
T ss_pred             CChhcC
Confidence            666443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=90.62  E-value=2  Score=33.32  Aligned_cols=42  Identities=14%  Similarity=-0.001  Sum_probs=25.0

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ..+-++||+|++....-.   .....+..       .--+--+|.||.|...
T Consensus       212 ~p~e~lLVlda~~Gq~a~---~~a~~F~~-------~~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       212 QPDNIIFVMDGSIGQAAE---AQAKAFKD-------SVDVGSVIITKLDGHA  253 (429)
T ss_pred             CCcEEEEEeccccChhHH---HHHHHHHh-------ccCCcEEEEECccCCC
Confidence            578899999987543222   22233321       1124578899999743

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PHA02518 ParA-like protein; Provisional

Probab=90.51  E-value=2.5  Score=28.71  Aligned_cols=59  Identities=10%  Similarity=-0.032  Sum_probs=34.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCC-EEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIP-CMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~   67 (142)
                      ||||.  ...+....+..+|.+|+++..+. .++..+.   .++..+..     ...+.+ ..++.|+.+-
T Consensus        83 D~p~~--~~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         83 DGAPQ--DSELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQE-----VTDGLPKFAFIISRAIK  145 (211)
T ss_pred             eCCCC--ccHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHh-----hCCCCceEEEEEeccCC
Confidence            78876  34556777889999999998764 2333333   33333321     112444 3566677653

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=90.47  E-value=2.8  Score=31.33  Aligned_cols=93  Identities=12%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---------CCCCHHHHHHHHHH
Q psy10891         13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------RQVDINDIECFYKE   83 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------~~~~~~~~~~~~~~   83 (142)
                      -+..++||++++|+|+....+.  .+.+..++... ...-....|-+. ..|.+...         ...+.+.+..++.+
T Consensus       135 lsv~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~-GIrlnk~~p~V~-I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E  210 (365)
T COG1163         135 LSVARNADLIIIVLDVFEDPHH--RDIIERELEDV-GIRLNKRPPDVT-IKKKESGGIRINGTGPLTHLDEDTVRAILRE  210 (365)
T ss_pred             eeeeccCCEEEEEEecCCChhH--HHHHHHHHHhc-CeEecCCCCceE-EEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence            3456899999999999976552  22333444321 111223334333 33333321         23678899999999


Q ss_pred             cCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         84 HNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +++. -..+-....-.++++.+.+...
T Consensus       211 y~I~-nA~V~Ir~dvTlDd~id~l~~n  236 (365)
T COG1163         211 YRIH-NADVLIREDVTLDDLIDALEGN  236 (365)
T ss_pred             hCcc-cceEEEecCCcHHHHHHHHhhc
Confidence            9964 4444445556778887777554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=89.10  E-value=3.2  Score=32.27  Aligned_cols=62  Identities=10%  Similarity=0.003  Sum_probs=34.2

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee
Q psy10891         17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS   93 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   93 (142)
                      ..+|.+++|+|++...   +.......+.        ..++ .-+|.||.|...+   --.+-.+....+ .|+.+++
T Consensus       204 ~~pdevlLVvda~~gq---~av~~a~~F~--------~~l~i~gvIlTKlD~~a~---~G~~ls~~~~~~-~Pi~fig  266 (437)
T PRK00771        204 VKPDEVLLVIDATIGQ---QAKNQAKAFH--------EAVGIGGIIITKLDGTAK---GGGALSAVAETG-APIKFIG  266 (437)
T ss_pred             hcccceeEEEeccccH---HHHHHHHHHH--------hcCCCCEEEEecccCCCc---ccHHHHHHHHHC-cCEEEEe
Confidence            3689999999987642   2122223322        1233 3567899996432   123333455555 5566665

>TIGR00959 ffh signal recognition particle protein

Probab=88.80  E-value=4.3  Score=31.49  Aligned_cols=63  Identities=8%  Similarity=0.014  Sum_probs=35.5

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST   94 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa   94 (142)
                      ..+.+++|+|....   .+...+...+....      ++ .=+|.||.|...+   .-.+..++...+ .|+.+++.
T Consensus       212 ~p~e~lLVvda~tg---q~~~~~a~~f~~~v------~i-~giIlTKlD~~~~---~G~~lsi~~~~~-~PI~fi~~  274 (428)
T TIGR00959       212 NPDEILLVVDAMTG---QDAVNTAKTFNERL------GL-TGVVLTKLDGDAR---GGAALSVRSVTG-KPIKFIGV  274 (428)
T ss_pred             CCceEEEEEeccch---HHHHHHHHHHHhhC------CC-CEEEEeCccCccc---ccHHHHHHHHHC-cCEEEEeC
Confidence            57889999998754   33333444442111      22 3556999995331   223455566667 56666553

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1486|consensus

Probab=88.43  E-value=1.5  Score=31.71  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=42.0

Q ss_pred             CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      -++++.|-||+|.    +..++...+++.-+   .+.+|+...-|++.+++.+...+.
T Consensus       238 Y~~ClYvYnKID~----vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  238 YIKCLYVYNKIDQ----VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEEEeeccce----ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhc
Confidence            4789999999995    56778888887755   556799999999999999998875

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=88.33  E-value=8.4  Score=30.92  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=38.3

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCH
Q psy10891         21 GCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMV  100 (142)
Q Consensus        21 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  100 (142)
                      ..++|++.+.  +..++...+..+.        ...+.-+|+||.|...   ..-.+..+....+ .|+.+++  +|+.|
T Consensus       460 a~lLVLpAts--s~~Dl~eii~~f~--------~~~~~gvILTKlDEt~---~lG~aLsv~~~~~-LPI~yvt--~GQ~V  523 (559)
T PRK12727        460 TSLLVLPANA--HFSDLDEVVRRFA--------HAKPQGVVLTKLDETG---RFGSALSVVVDHQ-MPITWVT--DGQRV  523 (559)
T ss_pred             CcEEEEECCC--ChhHHHHHHHHHH--------hhCCeEEEEecCcCcc---chhHHHHHHHHhC-CCEEEEe--CCCCc
Confidence            4566777653  3444444444442        1235678999999743   2334444555666 5676666  66666


Q ss_pred             -HHHH
Q psy10891        101 -NDSM  104 (142)
Q Consensus       101 -~~l~  104 (142)
                       +++.
T Consensus       524 PeDL~  528 (559)
T PRK12727        524 PDDLH  528 (559)
T ss_pred             hhhhh
Confidence             4443

>cd03112 CobW_like The function of this protein family is unkown

Probab=86.62  E-value=2  Score=28.28  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=24.7

Q ss_pred             ccCCEEEEEEeCCChhhHH-HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891         17 KDAHGCIIMFDLTNQNSFK-NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ...+.+++++|.......- ....+..++.         . --++|.||+|+
T Consensus       117 ~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---------~-ad~ivlnk~dl  158 (158)
T cd03112         117 YLLDGVITLVDAKHANQHLDQQTEAQSQIA---------F-ADRILLNKTDL  158 (158)
T ss_pred             eeeccEEEEEEhhHhHHHhhccHHHHHHHH---------H-CCEEEEecccC
Confidence            4689999999986543221 2223334442         1 22668999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=86.61  E-value=2.9  Score=33.39  Aligned_cols=57  Identities=12%  Similarity=0.133  Sum_probs=38.5

Q ss_pred             CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee--ccCCCCHHHHHHHHHHHHH
Q psy10891         54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS--TKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~l~~~~~  112 (142)
                      -++|+++++||.|... ....+.++.+|.+.+. ++..+.  ++=|.|-.++-..+++.+.
T Consensus       371 FGvPvVVAINKFd~DT-e~Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        371 FGVPVVVAINKFVTDT-DAEIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             cCCCEEEEEeCCCCCC-HHHHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHHHHh
Confidence            5899999999999743 2245668889999884 465433  3444566666666666554

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=86.53  E-value=7.1  Score=25.63  Aligned_cols=75  Identities=7%  Similarity=-0.117  Sum_probs=44.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||.-..  .....+..+|.+|++++.+. .++..+..+++.+..      .......+|.|+.+... ....+....+
T Consensus        69 D~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~------~~~~~~~iv~N~~~~~~-~~~~~~~~~~  138 (179)
T cd02036          69 DSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA------LGIKVVGVIVNRVRPDM-VEGGDMVEDI  138 (179)
T ss_pred             ECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH------cCCceEEEEEeCCcccc-cchhhHHHHH
Confidence            67765332  23445678999999998764 455555566655532      12234678999988643 1122223445


Q ss_pred             HHHcC
Q psy10891         81 YKEHN   85 (142)
Q Consensus        81 ~~~~~   85 (142)
                      .+.++
T Consensus       139 ~~~~~  143 (179)
T cd02036         139 EEILG  143 (179)
T ss_pred             HHHhC
Confidence            55566

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK10867 signal recognition particle protein; Provisional

Probab=85.81  E-value=8.8  Score=29.87  Aligned_cols=62  Identities=10%  Similarity=0.044  Sum_probs=34.1

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST   94 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa   94 (142)
                      ..+.+++|+|....   .+.......+.        ..++ .=+|.||.|-..+   .-.+..+....+ .|+.+++.
T Consensus       213 ~p~evllVlda~~g---q~av~~a~~F~--------~~~~i~giIlTKlD~~~r---gG~alsi~~~~~-~PI~fig~  275 (433)
T PRK10867        213 NPDEILLVVDAMTG---QDAVNTAKAFN--------EALGLTGVILTKLDGDAR---GGAALSIRAVTG-KPIKFIGT  275 (433)
T ss_pred             CCCeEEEEEecccH---HHHHHHHHHHH--------hhCCCCEEEEeCccCccc---ccHHHHHHHHHC-cCEEEEeC
Confidence            57888999998653   23233333332        1222 2456799996432   122444556666 56666553

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=85.23  E-value=7.4  Score=29.53  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=40.8

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      +..++.++|.+++|++.+- .+....++++..+.+    ......+..+|.|+.+...
T Consensus       233 t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~----~r~~~~~p~lv~n~~~~~~  285 (366)
T COG4963         233 TRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKR----LRPNDPKPILVLNRVGVPK  285 (366)
T ss_pred             HHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHH----hCCCCCCceEEeeecCCCC
Confidence            4678899999999999764 477777888888753    3445677889999988654

>cd03114 ArgK-like The function of this protein family is unkown

Probab=85.06  E-value=2.3  Score=27.77  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=29.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      ||||....   ...++..||.++++....-.+.+...+   ..+         -..--+++.||.|
T Consensus        98 DtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~---------~~~~~~~~~~k~~  148 (148)
T cd03114          98 ETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGI---------MEIADIVVVNKAD  148 (148)
T ss_pred             ECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhH---------hhhcCEEEEeCCC
Confidence            67885422   234778899999998876322222111   111         1233478899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.06  E-value=5.1  Score=24.04  Aligned_cols=34  Identities=6%  Similarity=-0.095  Sum_probs=16.5

Q ss_pred             CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe
Q psy10891         55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET   92 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (142)
                      ..-+|++.+-+=..   .....+...|+..+ .|++.+
T Consensus        48 ~aD~VIv~t~~vsH---~~~~~vk~~akk~~-ip~~~~   81 (97)
T PF10087_consen   48 KADLVIVFTDYVSH---NAMWKVKKAAKKYG-IPIIYS   81 (97)
T ss_pred             CCCEEEEEeCCcCh---HHHHHHHHHHHHcC-CcEEEE
Confidence            33455555443221   23445566666666 445554

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=84.81  E-value=15  Score=28.45  Aligned_cols=87  Identities=15%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             CCCcchhhh----hhhHhhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFT----WMTRVYYK---DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~----~~~~~~~~---~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~   72 (142)
                      ||||.-...    .....++.   ...-+++|++.+-.  ...+...+..+.         .++ -=++.||.|-..   
T Consensus       306 Dt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~---------~~~~~~vI~TKlDet~---  371 (424)
T PRK05703        306 DTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS---------RLPLDGLIFTKLDETS---  371 (424)
T ss_pred             eCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC---------CCCCCEEEEecccccc---
Confidence            788853332    11222333   23466777877543  233334434431         223 257899999643   


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCH-HHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMV-NDSM  104 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~  104 (142)
                      ..-.+..++...+ .|+.+++  +|++| +++.
T Consensus       372 ~~G~i~~~~~~~~-lPv~yit--~Gq~VpdDl~  401 (424)
T PRK05703        372 SLGSILSLLIESG-LPISYLT--NGQRVPDDIK  401 (424)
T ss_pred             cccHHHHHHHHHC-CCEEEEe--CCCCChhhhh
Confidence            2234555666667 5676666  66665 4544

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=84.77  E-value=9.9  Score=26.51  Aligned_cols=61  Identities=13%  Similarity=0.070  Sum_probs=36.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      |||+.  ...+....+..+|.+++++..+ ..++..+...+..+.   . ......++-+|.|+.+..
T Consensus       121 D~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~---~-~~~~~~~~~iv~n~~~~~  181 (246)
T TIGR03371       121 DVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALF---A-GSGPRIGPHFLINQFDPA  181 (246)
T ss_pred             ECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHh---h-cccccccceEEeeccCcc
Confidence            56663  3345566778899999999875 345555442222222   1 011345567899998853

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=84.72  E-value=9.1  Score=25.26  Aligned_cols=60  Identities=8%  Similarity=-0.055  Sum_probs=31.4

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEE
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTE   91 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   91 (142)
                      ..+.+++|++.....+.   ..+...+.+..      + ..-+|.||.|...+   ...+...+...+ .|+.+
T Consensus       112 ~~~~~~lVv~~~~~~~~---~~~~~~~~~~~------~-~~~viltk~D~~~~---~g~~~~~~~~~~-~p~~~  171 (173)
T cd03115         112 KPDEVLLVVDAMTGQDA---VNQAKAFNEAL------G-ITGVILTKLDGDAR---GGAALSIRAVTG-KPIKF  171 (173)
T ss_pred             CCCeEEEEEECCCChHH---HHHHHHHHhhC------C-CCEEEEECCcCCCC---cchhhhhHHHHC-cCeEe
Confidence            48999999998654321   22333332111      2 24567799997542   122223555555 44443

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]

Probab=84.33  E-value=4.3  Score=25.71  Aligned_cols=98  Identities=12%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-------CCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-------RQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------~~~~   73 (142)
                      |++|.-+..     |-..+-++=++++-.-..+     ..+..+.      . ..-.+++++.|.+-=.       ....
T Consensus        17 Dlag~~rmq-----yp~~vRiIrv~CsGrvn~~-----fvl~Al~------~-GaDGV~v~GC~~geCHy~~GN~ka~rR   79 (132)
T COG1908          17 DLAGTSRMQ-----YPPNVRIIRVMCSGRVNPE-----FVLKALR------K-GADGVLVAGCKIGECHYISGNYKAKRR   79 (132)
T ss_pred             hhhcccccc-----CCCceEEEEeeccCccCHH-----HHHHHHH------c-CCCeEEEecccccceeeeccchHHHHH
Confidence            555554432     3345555556665432222     2334443      1 2235788888876311       0112


Q ss_pred             HHHHHHHHHHcCC----ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         74 INDIECFYKEHNF----IGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        74 ~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .+.+.++..++++    ..++++||..++.+.+.++.++..+.+--
T Consensus        80 ~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG  125 (132)
T COG1908          80 MELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG  125 (132)
T ss_pred             HHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence            3445556677776    34889999999999999999998887653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=84.18  E-value=17  Score=28.04  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             CCCcchhhhhh----hHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTWM----TRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~----~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~   73 (142)
                      ||+|.-.+..+    +..++.  ...-+.+|++++..  ..++...+..+.         .+|+ =++.||.|-..   .
T Consensus       288 DTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~---------~~~i~~~I~TKlDET~---s  353 (407)
T COG1419         288 DTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS---------LFPIDGLIFTKLDETT---S  353 (407)
T ss_pred             eCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc---------cCCcceeEEEcccccC---c
Confidence            89996555543    233332  23455566777643  455666666662         4554 56789999532   2


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCH-HHHHH
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMV-NDSMK  105 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  105 (142)
                      .-.+-.+....+ .|+-+++  +|++| ++++.
T Consensus       354 ~G~~~s~~~e~~-~PV~YvT--~GQ~VPeDI~v  383 (407)
T COG1419         354 LGNLFSLMYETR-LPVSYVT--NGQRVPEDIVV  383 (407)
T ss_pred             hhHHHHHHHHhC-CCeEEEe--CCCCCCchhhh
Confidence            333334444445 4555555  66665 55554

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=83.46  E-value=8  Score=28.86  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=42.4

Q ss_pred             cCCEEEEEEeCCChhhHHH-HHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC-ceEEEeec
Q psy10891         18 DAHGCIIMFDLTNQNSFKN-TLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF-IGWTETST   94 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~-~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa   94 (142)
                      ..|++|-|+|+........ ....+ .++          ..-=+||+||+|+.+.. ..+..+.+.+..+- .+++.++.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi----------a~AD~ivlNK~Dlv~~~-~l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQL----------AFADVIVLNKTDLVDAE-ELEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHH----------HhCcEEEEecccCCCHH-HHHHHHHHHHHhCCCCeEEEccc
Confidence            4688999999977543332 22222 333          23348899999997632 24455555555542 34666565


Q ss_pred             cCCCCHHHHH
Q psy10891         95 KEGLMVNDSM  104 (142)
Q Consensus        95 ~~~~~i~~l~  104 (142)
                       .+.+..+++
T Consensus       185 -~~~~~~~ll  193 (323)
T COG0523         185 -GDVDLAELL  193 (323)
T ss_pred             -cCCCHHHhh
Confidence             333433343

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=83.19  E-value=2.9  Score=29.94  Aligned_cols=29  Identities=14%  Similarity=0.102  Sum_probs=24.6

Q ss_pred             HcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         83 EHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        83 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ...+.|++..||+++.|+..+++.+...+
T Consensus       237 ~~~~~pv~~gSa~~~~G~~~ll~~~~~~~  265 (268)
T cd04170         237 AGLLVPVLCGSALTNIGVRELLDALVHLL  265 (268)
T ss_pred             hCCEEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence            33456899999999999999999998775

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=83.08  E-value=5.7  Score=30.28  Aligned_cols=89  Identities=12%  Similarity=-0.014  Sum_probs=43.8

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCC--CC------CCCC----HHHHHHHHH
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDL--PH------RQVD----INDIECFYK   82 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~--~~------~~~~----~~~~~~~~~   82 (142)
                      +..-|.+|++.+..    |.....|+ ..+.+       .+.|+.+|.+|+|.  ..      +...    .+.++..|.
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~-------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~  180 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQR-------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL  180 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHH-------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHH-------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence            45679888877643    33333333 34432       47899999999995  10      1222    222333322


Q ss_pred             ----HcCC--ceEEEeeccCCC--CHHHHHHHHHHHHHHHh
Q psy10891         83 ----EHNF--IGWTETSTKEGL--MVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        83 ----~~~~--~~~~~~Sa~~~~--~i~~l~~~l~~~~~~~~  115 (142)
                          ..+.  .++|.+|..+-.  ++..|.+.|...+..++
T Consensus       181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence                2232  358889998765  46667777776665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=82.54  E-value=16  Score=26.50  Aligned_cols=67  Identities=7%  Similarity=-0.014  Sum_probs=37.2

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..+-+++|++++..  ..++..++..+.        .--+-=++.||.|-..   ..-.+-.++...+ .|+.+++  +|
T Consensus       184 ~~~~~~LVl~a~~~--~~d~~~~~~~f~--------~~~~~~~I~TKlDet~---~~G~~l~~~~~~~-~Pi~~it--~G  247 (270)
T PRK06731        184 EPDYICLTLSASMK--SKDMIEIITNFK--------DIHIDGIVFTKFDETA---SSGELLKIPAVSS-APIVLMT--DG  247 (270)
T ss_pred             CCCeEEEEEcCccC--HHHHHHHHHHhC--------CCCCCEEEEEeecCCC---CccHHHHHHHHHC-cCEEEEe--CC
Confidence            45678899987632  233334544442        1122367899999643   2223344555566 5566665  56


Q ss_pred             CCH
Q psy10891         98 LMV  100 (142)
Q Consensus        98 ~~i  100 (142)
                      +++
T Consensus       248 q~v  250 (270)
T PRK06731        248 QDV  250 (270)
T ss_pred             CCC
Confidence            555

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=82.07  E-value=11  Score=29.08  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             CCCcchhhhh----hhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTW----MTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~----~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~   73 (142)
                      ||||.-.+..    ....+..  ..+.+++|.+.+.  ...++..++...         ..++ --+|.||.|-..   .
T Consensus       292 DTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f---------~~l~i~glI~TKLDET~---~  357 (407)
T PRK12726        292 DTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL---------AEIPIDGFIITKMDETT---R  357 (407)
T ss_pred             ECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc---------CcCCCCEEEEEcccCCC---C
Confidence            8999632221    1222322  3467777777632  233333443333         1233 367799999643   2


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCHH
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMVN  101 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  101 (142)
                      .-.+-.++...+ .|+.++|  +|++|.
T Consensus       358 ~G~~Lsv~~~tg-lPIsylt--~GQ~Vp  382 (407)
T PRK12726        358 IGDLYTVMQETN-LPVLYMT--DGQNIT  382 (407)
T ss_pred             ccHHHHHHHHHC-CCEEEEe--cCCCCC
Confidence            334445566666 5676666  566654

>KOG4273|consensus

Probab=81.58  E-value=2.9  Score=30.19  Aligned_cols=44  Identities=18%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCC
Q psy10891         19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPH   69 (142)
Q Consensus        19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~   69 (142)
                      ..++++|||++....++.+..|+....       ....-+ +-++||.|...
T Consensus        79 l~a~vmvfdlse~s~l~alqdwl~htd-------insfdillcignkvdrvp  123 (418)
T KOG4273|consen   79 LQAFVMVFDLSEKSGLDALQDWLPHTD-------INSFDILLCIGNKVDRVP  123 (418)
T ss_pred             eeeEEEEEeccchhhhHHHHhhccccc-------cccchhheeccccccccc
Confidence            467889999999888899999976542       123333 55789999754

>PTZ00258 GTP-binding protein; Provisional

Probab=81.10  E-value=3.1  Score=31.86  Aligned_cols=45  Identities=16%  Similarity=0.068  Sum_probs=29.1

Q ss_pred             CCCCEEEEEeCC--CCC-CCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891         54 SPIPCMLLANKC--DLP-HRQVDINDIECFYKEHNFIGWTETSTKEGL   98 (142)
Q Consensus        54 ~~~p~ilv~nK~--D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~   98 (142)
                      ...|+|+|+|+.  |+. ......+.+..++...+..+++.+||+-..
T Consensus       219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            368999999999  752 222234455555656532568999987654

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=80.68  E-value=21  Score=27.76  Aligned_cols=66  Identities=9%  Similarity=0.031  Sum_probs=36.9

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE   96 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   96 (142)
                      ..+.+++|+|++-.  ..++..++..+.         .++ -=+|.||.|-..   ..-.+-.++...+ .|+.+++  +
T Consensus       350 ~PdevlLVLsATtk--~~d~~~i~~~F~---------~~~idglI~TKLDET~---k~G~iLni~~~~~-lPIsyit--~  412 (436)
T PRK11889        350 EPDYICLTLSASMK--SKDMIEIITNFK---------DIHIDGIVFTKFDETA---SSGELLKIPAVSS-APIVLMT--D  412 (436)
T ss_pred             CCCeEEEEECCccC--hHHHHHHHHHhc---------CCCCCEEEEEcccCCC---CccHHHHHHHHHC-cCEEEEe--C
Confidence            45778888887532  233334444442         123 356799999643   2233444556666 5566655  5


Q ss_pred             CCCH
Q psy10891         97 GLMV  100 (142)
Q Consensus        97 ~~~i  100 (142)
                      |+++
T Consensus       413 GQ~V  416 (436)
T PRK11889        413 GQDV  416 (436)
T ss_pred             CCCC
Confidence            5554

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=80.49  E-value=20  Score=27.85  Aligned_cols=89  Identities=9%  Similarity=-0.059  Sum_probs=48.1

Q ss_pred             CCCcchhhhh----hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTW----MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~----~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~   73 (142)
                      ||+|.-....    ....+.  ....-.++|++.+..  ...+..++....         .++ -=+|.||.|-..   .
T Consensus       276 DTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~---------~~~~~~~I~TKlDEt~---~  341 (420)
T PRK14721        276 DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQ---------GHGIHGCIITKVDEAA---S  341 (420)
T ss_pred             cCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhc---------CCCCCEEEEEeeeCCC---C
Confidence            7888554322    122222  124567788888743  233344444442         222 356899999643   2


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCH-HHHHHH
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMV-NDSMKF  106 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~~  106 (142)
                      .-.+-.++...+ .|+.+++  +|++| +++...
T Consensus       342 ~G~~l~~~~~~~-lPi~yvt--~Gq~VP~Dl~~a  372 (420)
T PRK14721        342 LGIALDAVIRRK-LVLHYVT--NGQKVPEDLHEA  372 (420)
T ss_pred             ccHHHHHHHHhC-CCEEEEE--CCCCchhhhhhC
Confidence            334444566666 5576666  67776 555443

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=80.43  E-value=15  Score=24.72  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=55.7

Q ss_pred             hccCCEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCce
Q psy10891         16 YKDAHGCIIMFDLTNQN-------SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIG   88 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~   88 (142)
                      ++....=.+++|.++--       -...+..|+.++.+..     ..-.++||-|-.-... .....+...+.+.++ .|
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~-----~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lg-Ip  108 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF-----GKDRVLIVSNSAGSSD-DPDGERAEALEKALG-IP  108 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC-----CCCeEEEEECCCCccc-CccHHHHHHHHHhhC-Cc
Confidence            45566667778877521       1235667888886432     2225888888763322 345677888888999 66


Q ss_pred             EEEeeccCCCCHHHHHHHH
Q psy10891         89 WTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        89 ~~~~Sa~~~~~i~~l~~~l  107 (142)
                      ++.-+++...+..+++..+
T Consensus       109 vl~h~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen  109 VLRHRAKKPGCFREILKYF  127 (168)
T ss_pred             EEEeCCCCCccHHHHHHHH
Confidence            8888899997777666544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>KOG3929|consensus

Probab=80.01  E-value=1.4  Score=31.97  Aligned_cols=41  Identities=15%  Similarity=0.186  Sum_probs=24.6

Q ss_pred             CCCCEEEEEeCCCCCCCCCCHHHHHHHH-------HHcCCceEEEeeccC
Q psy10891         54 SPIPCMLLANKCDLPHRQVDINDIECFY-------KEHNFIGWTETSTKE   96 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~   96 (142)
                      ..+|+++|+.|.|.-. ....+.....|       -.+|.. .++.|.+.
T Consensus       189 ~P~PV~IVgsKYDvFq-~FesekRkH~C~~LRf~Ah~yGaa-LlmfSskM  236 (363)
T KOG3929|consen  189 FPVPVVIVGSKYDVFQ-DFESEKRKHICKTLRFVAHYYGAA-LLMFSSKM  236 (363)
T ss_pred             CCCceEEeccchhhhc-cccHHHHHHHHHHHHHHHHHhhhH-HHHHHHhh
Confidence            4689999999999753 22333333333       344433 55667664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		9e-14
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-13
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-13
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		7e-13
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-13
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		8e-13
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		8e-13
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-12
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-12
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-12
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-12
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-12
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		4e-12
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-12
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		8e-12
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-11
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-11
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-11
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-11
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-11
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-11
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-11
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-11
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-11
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-11
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-11
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-11
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-11
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-11
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		7e-11
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		7e-11
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-11
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-11
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		9e-11
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-10
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-10
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-10
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-10
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-10
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-10
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-10
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-10
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-10
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-10
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-10
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-10
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-10
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-10
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		7e-10
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-10
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-10
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-10
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-09
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-09
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-09
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-09
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-09
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-09
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-09
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-09
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-09
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-09
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-09
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-09
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-09
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-09
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-09
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-09
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-09
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		8e-09
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		9e-09
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-09
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		9e-09
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-08
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-08
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-08
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-08
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-08
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-08
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-08
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-08
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-08
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-08
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-08
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-08
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-08
1byu_A	216	Canine Gdp-Ran Length = 216		3e-08
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-08
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-08
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-08
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-08
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-08
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-08
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-08
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-08
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-08
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-08
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-08
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-08
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-08
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		9e-08
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		9e-08
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		9e-08
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-08
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		9e-08
6q21_A	171	Molecular Switch For Signal Transduction: Structura		9e-08
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		9e-08
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-08
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-07
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-07
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-07
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-07
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-07
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-07
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-07
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-07
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-07
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-07
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-07
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-07
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-07
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-07
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-07
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-07
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-07
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-07
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-07
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-07
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-07
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-07
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-07
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-07
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-07
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-07
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-07
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-07
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-07
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-07
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-07
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-07
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-07
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-07
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-07
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-07
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-07
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-07
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-07
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-07
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-07
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		7e-07
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-07
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-07
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		8e-07
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		8e-07
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		9e-07
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		9e-07
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-07
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		9e-07
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-07
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		9e-07
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-06
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-06
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-06
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-06
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-06
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-06
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-06
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		5e-06
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-05
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-05
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-05
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-05
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-05
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		6e-05
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-04

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C+++FD+T  N+FK    W+ +  ++ +  D    P ++L
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK DL +RQV     + +    N I + ETS KE + V  + + +    ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C+++FD+T  N+FK    W+ +  ++ +  D    P ++L
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK DL +RQV     + +    N I + ETS KE + V  + + +    ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C+++FD+T  N+FK    W+ +  ++ +  D    P ++L
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D  +RQV     + +    N I + ETS KE + V  + + +    ++QE
Sbjct: 124 GNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ +HG II++D+T+Q SF     W +++D   T    S +  +L+
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS---MKFLLDVLMRQEGL- 117
            NKCDL  ++V   D+   + + N + + ETS  +   V D+   M   +   M Q+ L 
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179
Query: 118 QNFPNNDDENMVKLSGPA 135
           +     +D+  V L G +
Sbjct: 180 ETTQKKEDKGNVNLKGQS 197

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ +HG II++D+T+Q SF     W +++D   T    S +  +L+
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 132
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V   D+   + + N + + ETS  +   V D+ 
Sbjct: 133 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ +HG II++D+T+Q SF     W +++D   T    S +  +L+
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS---MKFLLDVLMRQEGL- 117
            NKCDL  ++V   D+   + + N + + ETS  +   V D+   M   +   M Q+ L 
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179
Query: 118 QNFPNNDDENMVKLSGPA 135
           +     +D+  V L G +
Sbjct: 180 ETTQKKEDKGNVNLKGQS 197

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +   +Y+ A  C+++FD+T  N+FK    W+ +  ++ +  D    P ++L
Sbjct: 64  TAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK DL +RQV     + +    N I + ETS KE + V  + + +    ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 117
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100
            NK DL   RQV I + E   KE N + + ETS K G  V
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNV 156

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK DL   RQV I + E   KE N + + ETS K G  V    + +   L    G+++ 
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
            +   E+M+ +    P+
Sbjct: 181 QDRSREDMIDIKLEKPQ 197

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+DAH  ++++D+TN+ SF N   W  ++           +  MLL
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLL 122
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK D  H R V   D E   KE+  + + ETS K GL V+ +   +   L R+
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKRR 175

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+G I+ +D+T ++SF +   W +DV        GS I  +L+
Sbjct: 85  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLI 140
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS-MKFLLDVLMRQEG 116
            NK DL   R+V + + +   + ++ +   ETS K+   V ++ ++   +++MR  G
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 57  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 112
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEG 97
            NK DL   RQV I + E   KE N + + ETS K G
Sbjct: 113 GNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKAG 148

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 127
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK DL   RQV I + E   KE N + + ETS K G  V    + +   L    G+++ 
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 183
Query: 121 PNNDDENMVKLSGPAPK 137
            +   E+M+ +    P+
Sbjct: 184 QDRSREDMIDIKLEKPQ 200

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG II++D+T+++SF N  +W +++D          +  +L+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAM----ENVNKLLV 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V  +D      + + I + ETS K    V  + 
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLV 117
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK DL   RQV I + E   KE N + + ETS K G  V    + +   L    G+++ 
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 173
Query: 121 PNNDDENMVKL 131
            +   E+M+ +
Sbjct: 174 QDRSREDMIDI 184

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  +++DA G ++MFDLT+Q SF N   W   +       +      +L+
Sbjct: 91  TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLI 147
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DLP  R+V+         ++  I + ETS   G  V  +++ LLD++M++
Sbjct: 148 GNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIMKR 200

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 127
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 144
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCM 59
           T GQER+  +T  YY+ A G ++++D+T +NSF+N  KW K+      L D   S I  +
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE------LRDNADSNIVIL 117
Query: 60  LLANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
           L+ NK DL H +V IND +   Y +   + + ETS  E   V  +   LL+
Sbjct: 118 LVGNKSDLKHLRV-INDNDATQYAKKEKLAFIETSALEATNVELAFHQLLN 167

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 58  TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE----RGSDVIIMLV 113
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
            NK DL   RQ+ I + E   KE + + + ETS K G  V    + +   L+
Sbjct: 114 GNKTDLADKRQITIEEGEQRAKELS-VMFIETSAKTGYNVKQLFRRVASALL 164

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 127
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 136
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 117
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 55  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 110
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 111 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 117
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q S+ N  +W +++D   +      +  +L+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLV 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK DL  ++V  N     + +   I + ETS K    V  +   +   + ++ GL+
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLE 177

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   ++++D+TN NSF  T KW  DV  +     GS +  ML+
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE----RGSDVIIMLV 125
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100
            NK DL   RQV   + E   KE N + + ETS K G  V
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNV 164

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +T  +++DA G ++MFDLT+Q SF N   W   +       +   +   L+
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV---LI 133
Query: 62  ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ-----E 115
            NK DLP  Q ++N+ +     E   I + ETS   G  V  S++ LLD++M++     E
Sbjct: 134 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVE 192
Query: 116 GLQNFPNNDDENMVKLSGPAPKVEKK 141
             Q     +  N  KL G  P  EKK
Sbjct: 193 KTQVPDTVNGGNSGKLDGEKP-AEKK 217

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +T  +++DA G ++MFDLT+Q SF N   W   +       +   +   L+
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV---LI 133
Query: 62  ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DLP  Q ++N+ +     E   I + ETS   G  V  S++ LLD++M++
Sbjct: 134 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +TR YY+ A G ++++D+T +++F +   W +D          S +  ML+
Sbjct: 66  TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN----SNMVIMLI 121
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NK DL   R+V   + E F +EH  I + ETS K    V ++ 
Sbjct: 122 GNKSDLESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAF 164

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +TR YY+ A G ++++D+T + +F +   W +D     +    S +  ML+
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLI 132
Query: 62  ANKCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NK DL  R+ V   + E F +EH  I + ETS K    V ++ 
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAF 175

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+ A   II+FD+TNQ SF+   KW +++      + G+P   M L
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQ-----AQGNPNMVMAL 122
Query: 62  A-NKCD-LPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
           A NK D L  R+V   D +  Y + N + + ETS K    V +
Sbjct: 123 AGNKSDLLDARKVTAEDAQT-YAQENGLFFMETSAKTATNVKE 164

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+ A   I+++D+TNQ +F     W K++  + + S    I   L 
Sbjct: 64  TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALA 119
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL + R V+  + +  Y + N + + ETS K  + VND
Sbjct: 120 GNKADLANKRMVEYEEAQA-YADDNSLLFMETSAKTAMNVND 160

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q S+ N  +W +++D   +      +  +L+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLV 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NK DL  ++V  N     + +   I + ETS K    V  + 
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T +++F     W  +++  CT +D   I   L+
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNXLV 127
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
            NK D  +R+VD N+   F ++H+ + + E S K    V  + + L++ +++  GL    
Sbjct: 128 GNKIDKENREVDRNEGLKFARKHSXL-FIEASAKTCDGVQCAFEELVEKIIQTPGLWESE 186
Query: 122 NNDDENMVKLSGPAP 136
           N +       SGP+ 
Sbjct: 187 NQN-------SGPSS 194

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+  HG I+++D+T+  SF N  +W  +++  C       +  +L+
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWT--ETSTKEGLMVNDSMKFLLDVLMR 113
            NK D P R+V   + E  YK    +G    ETS KE + V +    + ++++R
Sbjct: 120 GNKNDDPERKV--VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 61  TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLV 116
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR---QEGLQ 118
            NK DL H +    D    + E N + + ETS  +   V ++ K +L  + R   Q+ + 
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 176
Query: 119 NFPNNDDE---NMVKLSGP 134
           +   +D+    N+V +S P
Sbjct: 177 DRAAHDESPGNNVVDISVP 195

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 54  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 109
Query: 62  ANKCDLP 68
            NKCDL 
Sbjct: 110 GNKCDLT 116

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   +      +  +L+
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
             KCDL  ++V        + +   I + ETS K    V  S 
Sbjct: 120 GIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 162

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 63  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 117
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 118 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 159

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G ++++D+TN+ SF N   W ++++   +    + +  M+L
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 117
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCD+   RQV     E    ++  I + ETS K  + V ++ 
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF 160

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G ++++D+TN+ SF N   W ++++   +    + +  M+L
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 119
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NKCD+   RQV     E    ++  I + ETS K  + V ++ 
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF 162

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +T  +++DA G +++FDLTN+ SF N   W   + +     +   + C   
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLC--- 133
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL  ++    +      E   I + ETS   G  ++ +++ LLD++M++
Sbjct: 134 GNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV--DLKCTLSDGSPIPCM 59
           T G ERF  +T  +++DA G ++ FDLT+Q SF N   W   +  +  C   D      +
Sbjct: 77  TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD-----IV 131
Query: 60  LLANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           L+ NK DLP  Q ++N+ +     E   I + ETS   G  V  S++ LLD++ ++
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +T  +++DA G ++ FDLT+Q SF N   W   +       +      +L+
Sbjct: 77  TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD---IVLI 133
Query: 62  ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DLP  Q ++N+ +     E   I + ETS   G  V  S++ LLD++ ++
Sbjct: 134 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ +  C++ F + +  SF+N   WKK+      + +    P ++L
Sbjct: 67  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 126
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
            NK D+  RQV   + + + K++    + ETS K+   V  + +
Sbjct: 127 GNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 76  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 131
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
            NK DL H R V  ++   F  E N + + ETS  +   V  + + +L  + R
Sbjct: 132 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +   YY+ A   I+++D+TN+ SF     W K++  +      SP I   L
Sbjct: 63  TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 117
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K    VN+
Sbjct: 118 SGNKADLANKRAVDFQEAQS-YADDNSLLFXETSAKTSXNVNE 159

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ +  C++ F + +  SF+N   WKK+      + +    P ++L
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
            NK D+  RQV   + + + +++    + ETS K+   V  + +
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G I+M+D+TN+ SF     W   +  K    D + +  +L+
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI--KTYSWDNAQV--ILV 134
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            NKCD+   +V   +      E     + E S KE + V  + + L+D +
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ +  C++ F + +  SF+N   WKK+      + +    P ++L
Sbjct: 65  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 124
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
            NK D+  RQV   + + + +++    + ETS K+   V  + +
Sbjct: 125 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 85  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 140
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL H R V  ++   F  E N + + ETS  +   V  + + +L
Sbjct: 141 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 187

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN ++F     W K++  +      SP I   L
Sbjct: 61  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ-----ASPNIVIAL 115
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL   R V+  + +  Y + N + + ETS K  + VN+
Sbjct: 116 AGNKADLASKRAVEFQEAQA-YADDNSLLFMETSAKTAMNVNE 157

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN ++F     W K++         SP I   L
Sbjct: 59  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-----RQASPNIVIAL 113
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL   R V+  + +  Y + N + + ETS K  + VN+
Sbjct: 114 AGNKADLASKRAVEFQEAQA-YADDNSLLFMETSAKTAMNVNE 155

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G I+M+D+TN+ SF     W   +  K    D + +  +L+
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQV--LLV 116
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            NKCD+   +V  ++      +H    + E S K+ + V  + + L+DV+
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 131
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D+  R V  +  E   KE   I + E+S K    VN+ + F L  L++++
Sbjct: 132 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 183

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T G ER+  +  +YY+ A   I+++D+TN+ SF     W K++         SP I   L
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-----RQASPNIVIAL 115
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + +  Y + N + + ETS K  + VN+
Sbjct: 116 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 157

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 59  TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK D+  R V  +  E   KE   I + E+S K    VN+
Sbjct: 115 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE 154

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++   +++ +     + D   +P +L+
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDLP R VD    +   + +  I + ETS K    V+D+   L+
Sbjct: 116 GNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 63  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 118
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D+  R V  +  E   KE   I + E+S K    VN+ + F L  L++++
Sbjct: 119 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 170

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G +I++D++  +S++N   W    +L+    D   +   L+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLS--ELRENADDN--VAVGLI 124
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL H R V   + + F +E+  + +TETS      V+ + + L++ + ++
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQK 177

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +T+ YY+ A  C+++F  T++ SF+    W++ V     +++   IP  L+
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV-----VAEVGDIPTALV 115
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
            NK DL       N+      +   + +  TS KE L V++  K+L +
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C++ F + ++ SF+N   W+K+      + D    P ++L
Sbjct: 63  TAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96
            NK D   RQV   + + +  E+    + ETS K+
Sbjct: 123 GNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKD 157

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 59  TAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D   R V  +  E   KE   I + E+S K    VN+ + F L  L++++
Sbjct: 115 GNKSDXETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 166

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 119
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
            NK DL H R V  ++   F  E N + + ETS  +   V  + + +L  + R
Sbjct: 120 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD-GSPIPCML 60
           T GQERF  +   Y +D+   I+++D+TN+ SF+NT KW +D+     L++ G  +   L
Sbjct: 57  TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI-----LNERGKDVIIAL 111
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEG 97
           + NK DL   R+V   +     +E+N   + ETS K G
Sbjct: 112 VGNKTDLGDLRKVTYEEGXQKAQEYN-TXFHETSAKAG 148

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 59  TAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D   R V  +  E   KE   I + E+S K    VN+ + F L  L++++
Sbjct: 115 GNKSDXETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 166

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G ++M+D+ NQ SF     W   +  K    D + +  +L+
Sbjct: 78  TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI--KTYSWDNAQV--ILV 133
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            NKCDL   R V   D      +  F  + E S KE + V    + L+DV+
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVI 183

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQERF  +TR YY+ A G ++++D+T++ ++ +   W  D     TL+  SP I  +L
Sbjct: 81  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR---TLA--SPNIVVIL 135
Query: 61  LANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
             NK DL P R+V   +   F +E+  + + ETS   G  V ++ 
Sbjct: 136 CGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVEEAF 179

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 140
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL H R V  ++   F  E N + + ETS  +   V  + + +L
Sbjct: 141 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 187

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++   +++ +     + D   +P +L+
Sbjct: 76  TAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 132
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDLP R VD    +   + +  I + ETS K    V+D+   L+
Sbjct: 133 GNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 178

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T G ER+  +  +YY+ A   I+++D+TN ++F     W K++         SP I   L
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-----RQASPNIVIAL 115
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL   R V+  + +  Y + N + + ETS K  + VN+
Sbjct: 116 AGNKADLASKRAVEFQEAQA-YADDNSLLFMETSAKTAMNVNE 157

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T ++++ +   W  D      L++ + +  +L+
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-IILI 126
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NK DL   R V   + + F +E+  + + E S K G  V D+ 
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVEDAF 169

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF +   +++ +     + D   +P +L+
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK---RVKDSDDVPMVLV 132
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDLP R VD        K +  I + ETS K    V D+   L+
Sbjct: 133 GNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLV 178

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +  +YY+D++G I+++D+T+++SF+    W K  +L+  L  G+ I   ++
Sbjct: 76  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK--ELRKML--GNEICLCIV 131
Query: 62  ANKCDL-PHRQVDINDIECF 80
            NK DL   R V I + E +
Sbjct: 132 GNKIDLEKERHVSIQEAESY 151

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 125
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 126 GNKVDIKDRKVKAKSI-VFHRKKNL 149

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +  +YY+D++G I+++D+T+++SF+    W K  +L+  L  G+ I   ++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK--ELRKML--GNEICLCIV 117
Query: 62  ANKCDL-PHRQVDINDIECF 80
            NK DL   R V I + E +
Sbjct: 118 GNKIDLEKERHVSIQEAESY 137

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +  +YY+D++G I+++D+T+++SF+    W K  +L+  L  G+ I   ++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK--ELRKML--GNEICLCIV 117
Query: 62  ANKCDL-PHRQVDINDIECF 80
            NK DL   R V I + E +
Sbjct: 118 GNKIDLEKERHVSIQEAESY 137

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 125
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 126 GNKVDIKDRKVKAKSI-VFHRKKNL 149

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 59  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 113
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 114 GNKVDIKDRKVKAKSI-VFHRKKNL 137

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+ A   I++FD++N N+      W   + +       S    +L+
Sbjct: 100 TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSNYIIILV 153
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97
           ANK D    QVDI +++ + +++N + + +TS K G
Sbjct: 154 ANKIDKNKFQVDILEVQKYAQDNNLL-FIQTSAKTG 188

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
            NKCDL  R V+    +   + +  I + ETS K    V D+  + L   +RQ  L+   
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF-YTLVREIRQHKLRKL- 171
Query: 122 NNDDENMVKLSGPA 135
           N  DE     SGP 
Sbjct: 172 NPPDE-----SGPG 180

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++   +++ +     + D   +P +L+
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DLP R VD    +   + +  I + ETS K    V+D+   L+
Sbjct: 116 GNKSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++   +++ +     + D   +P +L+
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DLP R VD    +   + +  I + ETS K    V+D+   L+
Sbjct: 116 GNKSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++   +++ +     + D   +P +L+
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DLP R VD    +   + +  I + ETS K    V+D+   L+
Sbjct: 116 GNKSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T + +F +  KW K +D K    D      +L+
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAE---LLLV 137
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK D    R++     E F ++   + + E S K+   V++    L+D ++++
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+  I+ +D+T + SF+   +W ++++   +    + +  +L+
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLV 137
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGLQ 118
            NK DL   R+V     E F +  +   + ETS KE    ++  K  LD+  R   E  Q
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKES---DNVEKLFLDLACRLISEARQ 193
Query: 119 N 119
           N
Sbjct: 194 N 194

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C++++D+TN +SF+N   W+ +  +   ++     P ++L
Sbjct: 65  TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
Query: 62  ANKCD 66
            NK D
Sbjct: 125 GNKID 129

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE++  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 64  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 121 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 65  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 121
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 122 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 167

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQ RF  +TR YY+ A G ++++D+T ++++ +   W  D      L++ + +  +L+
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-IILI 141
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NK DL   R V   + + F +E+  + + E S K G  V D+ 
Sbjct: 142 GNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVEDAF 184

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NKCDL  R V+    +   + +  I + ETS K    V D+  + L   +RQ  L+  
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF-YTLVREIRQHKLRKL 171

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NKCDL  R V+    +   + +  I + ETS K    V D+  + L   +RQ  L+  
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF-YTLVREIRQHKLRKL 171

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 63  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 120 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 165

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 63  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 120 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 165

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAGRTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G I+ +D+TN+ SF     W     +K    D + +  +L+
Sbjct: 64  TAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS--TQIKTYSWDNAQV--LLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            NKCD    +V  ++      +H    + E S K+ + V  + + L+DV+
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP--IPCM 59
           T GQERF  +  +YY+ +   +I++D+T Q+SF    KW K+      L +  P  I   
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE------LKEHGPENIVMA 132
Query: 60  LLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
           +  NKCDL   R+V + D + + +    I   ETS K  + + +
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINIEE 175

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G ++++D+    +++N  +W K++         S I   L+
Sbjct: 67  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIXLV 122
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL H R V  ++   F  E N + + ETS  +   V  + + +L
Sbjct: 123 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 169

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G ++++D+    +++N  +W K++         S I   L+
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIXLV 116
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL H R V  ++   F  E N + + ETS  +   V  + + +L
Sbjct: 117 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   II FD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  M   Y +  HG +++F + ++ SF    K    +     + D    P +L+
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVLV 120
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
            NK DL   RQV  ++   F   H+ + + E S K  L V+++ + L+  + +
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            N+CDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNRCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  +   YY +A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 68  TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLC 122
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 123 GNKVDVKERKVKAKTI-TFHRKKNL 146

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  M   Y +   G +++F +T++ SF+   K+++ +     + D    P +L+
Sbjct: 60  TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI---LRVKDRDEFPMILI 116
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            NK DL H RQV   + +   ++   + + E S K  + V+ +   L+ V+
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLK-VTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 66  TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 68  TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 122
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 123 GNKVDIKDRKVKAKSI-VFHRKKNL 146

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G +++FDLT   ++    +W K++         + I  ML+
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLV 136
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETST 94
            NK DL   R+V   +   F  E+N + + ETS 
Sbjct: 137 GNKSDLSQAREVPTEEARMF-AENNGLLFLETSA 169

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   YY++A   ++++D+T   SF     W K++  + +      I   L+
Sbjct: 59  TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALV 114
Query: 62  ANKCDL----PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK D       R+V   + E   +E   + + ETS K G  VND
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVND 158

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 62  TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 116
Query: 62  ANKCDLPHRQVDINDIECFYKEHNF 86
            NK D+  R+V    I  F+++ N 
Sbjct: 117 GNKVDIKDRKVKAKSI-VFHRKKNL 140

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  +   YY +A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 61  TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLC 115
Query: 62  ANKCDLPHRQVDINDIECFYKEHN 85
            NK D+  R+V    I  F+++ N
Sbjct: 116 GNKVDVKERKVKAKTI-TFHRKKN 138

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G +++FDLT   ++    +W K++         + I  ML+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLV 121
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETS 93
            NK DL   R+V   +   F  E+N + + ETS
Sbjct: 122 GNKSDLSQAREVPTEEARMF-AENNGLLFLETS 153

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  +   YY +A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 60  TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLC 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHN 85
            NK D+  R+V    I  F+++ N
Sbjct: 115 GNKVDVKERKVKAKTI-TFHRKKN 137

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCML 60
           T G  +F  M R+     H  I++F +T++ S +     +K  V +K ++ D   IP ML
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVML 119
Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
           + NKCD   R+VD  + +   +E     + ETS K    +N ++K L   L+  E  +N 
Sbjct: 120 VGNKCDETQREVDTREAQAVAQEWK-CAFMETSAK----MNYNVKELFQELLTLETRRNM 174
Query: 121 PNNDD 125
             N D
Sbjct: 175 SLNID 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T++ ++     W  D  +  +      I  +L 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILC 121
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
            NK DL   R+V   +   F +E+  + + ETS   G  V ++ 
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVEEAF 164

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G+E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE  + M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T++ ++     W  D  +  +      I  +L 
Sbjct: 67  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILC 122
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
            NK DL   R+V   +   F +E+  + + ETS   G
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTG 158

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 2   TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
           T GQERF   M + YY++ H  + ++D+TN  SF +   W ++       +D   IP +L
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRIL 132
Query: 61  LANKCDL 67
           + NKCDL
Sbjct: 133 VGNKCDL 139

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G +I++D++  +S++N   W    +L+    D   +   L+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL--TELRENADDN--VAVGLI 121
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETST 94
            NK DL H R V  ++ + F  E+  + +TETS 
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQML-FTETSA 154

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQERF  +  +YY+ +   II++D+T + +F     W +++        G P I   +
Sbjct: 61  TAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-----QHGPPSIVVAI 115
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NKCDL   R+V   D + +    + I + ETS K  + +N+
Sbjct: 116 AGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 157

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G +I++ +T++ SF++  ++ +   L   + D    P +L+
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 129
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
           ANK DL H R+V  +  +    ++N I + ETS K+  L V+ +   L+ V+ +Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 63  TAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 119
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 120 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 165

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGS--PIPCM 59
           T GQERF  + + Y++ A G ++++D+T + SF N  +W   VD+   + D +   +P M
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW---VDM---IEDAAHETVPIM 137
Query: 60  LLANKCDL 67
           L+ NK D+
Sbjct: 138 LVGNKADI 145

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G +I++ +T++ SF++  ++ +   L   + D    P +L+
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 129
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
           ANK DL H R+V  +  +    ++N I + ETS K+  L V+ +   L+ V+ +Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G +I++ +T++ SF++  ++ +   L   + D    P +L+
Sbjct: 68  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 124
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
           ANK DL H R+V  +  +    ++N I + ETS K+  L V+ +   L+ V+ +Q
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G +I++ +T++ SF++  ++ +   L   + D    P +L+
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 129
Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
           ANK DL H R+V  +  +    ++N I + ETS K+  L V+ +   L+ V+ +Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NKCDL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL  R V+    +   + +  I + ETS K    V D+   L+
Sbjct: 115 GNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q++F +    ++ +     + D   +P +L+
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTDDVPMILV 114
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V     +   ++ N   + E+S K  + VN+
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNE 156

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q++F +    ++ +     + D   +P +L+
Sbjct: 60  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTDDVPMILV 116
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V     +   ++ N   + E+S K  + VN+
Sbjct: 117 GNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNE 158

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 2   TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
           T GQERF   M + YY++ H  + ++D TN  SF +   W ++       +D   IP +L
Sbjct: 85  TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IPRIL 141
Query: 61  LANKCDL 67
           + NKCDL
Sbjct: 142 VGNKCDL 148

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+   +  VYY  A G I+ FD+T++ + +N  +W K+         G+  P ++ 
Sbjct: 68  TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVC 123
Query: 62  ANKCDLPHRQ 71
           ANK D+ +RQ
Sbjct: 124 ANKIDIKNRQ 133

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +TR YY+ A G ++++D+T++ ++     W  D  +  +      I  +L 
Sbjct: 64  TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILC 119
Query: 62  ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
            NK DL   R+V   +   F +E+  + + ETS   G
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTG 155

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T G ERF  +  +YY+ +   II++D+T + +F     W +++        G P I   +
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-----QHGPPSIVVAI 116
Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NKCDL   R+V   D + +    + I + ETS K  + +N+
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 158

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q++F +    ++ +     + D   +P +L+
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILV 114
Query: 62  ANKCDLPHRQV 72
            NKCDL   +V
Sbjct: 115 GNKCDLEDERV 125

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q++F +    ++ +     + D   +P +L+
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILV 114
Query: 62  ANKCDLPHRQV 72
            NKCDL   +V
Sbjct: 115 GNKCDLEDERV 125

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 129
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
            NK DL   RQV + + +   ++ N + + ETS K
Sbjct: 130 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAK 163

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 117
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
            NK DL   RQV + + +   ++ N + + ETS K
Sbjct: 118 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAK 151

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 125
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
            NK DL   RQV + + +   ++ N + + ETS K
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAK 159

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 115
Query: 62  ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
            NK DL   RQV + + +    + N + + ETS K
Sbjct: 116 GNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAK 149

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  M  +Y K+  G I+++ L NQ SF++ +K  +D  ++    +   +P +L+
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD-IKPMRDQIIRVKRYE--KVPVILV 114
Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   +   +       E     + ETS K   MV++
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK--WKKDVDLKCTLSDGSPIPCM 59
           T G  +F  M R+     H  I+++ +T++ S +  LK  +++  ++K    D   IP M
Sbjct: 58  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEE-LKPIYEQICEIK---GDVESIPIM 113
Query: 60  LLANKCD-LPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           L+ NKCD  P R+V  ++ E   +      + ETS K    V +  + LL++  R+
Sbjct: 114 LVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKRR 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-36
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-35
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-32
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-29
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-28
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-28
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-28
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-27
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-27
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-27
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-27
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-27
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-27
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-27
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-26
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-26
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-26
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-26
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-26
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-26
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-26
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-26
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-26
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-25
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-25
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-25
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-25
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-25
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-25
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-25
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-25
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-25
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-25
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-25
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-25
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-25
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-25
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-25
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-25
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-25
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-25
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-25
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-25
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-25
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-25
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-25
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	7e-25
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	8e-25
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-24
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-24
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-24
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-24
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-24
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-24
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-24
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-24
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-24
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-24
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	8e-24
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-23
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-22
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-22
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	9e-22
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	9e-22
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-21
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-21
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-17
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-17
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-16
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-12
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-11
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-10
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-10
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-10
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-10
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	5e-10
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-10
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-10
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	8e-10
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-09
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-09
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-09
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-08
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-06

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  122 bits (308), Expect = 4e-36
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C+++FD+T  N+FK    W+ +  ++ +  D    P ++L
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
            NK DL +RQV     + +    N I + ETS KE + V  + + +    ++QE      
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELY 183

Query: 122 NNDDENMVKLSGPAPKVEKK 141
           N   E  +KL          
Sbjct: 184 NEFPEP-IKLDKNERAKASA 202

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  120 bits (303), Expect = 1e-35
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ A  C++++D+TN +SF+N   W+ +  +   ++     P ++L
Sbjct: 65  TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124

Query: 62  ANKCDLPH--RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D     + V     +   K    I    TS K  + V+ + + +    ++Q 
Sbjct: 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  111 bits (281), Expect = 2e-32
 Identities = 29/114 (25%), Positives = 57/114 (50%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   +Y+ +  C++ F + +  SF+N   WKK+      + +    P ++L
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NK D+  RQV   + + + +++    + ETS K+   V  + +  +  ++  E
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  104 bits (261), Expect = 3e-29
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 8/126 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T +++F     W  +++   T    + I  ML+
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE---TYCTRNDIVNMLV 127

Query: 62  ANKCDLPHRQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
            NK D  +R+VD N+   F ++H+  FI   E S K    V  + + L++ +++  GL  
Sbjct: 128 GNKIDKENREVDRNEGLKFARKHSMLFI---EASAKTCDGVQCAFEELVEKIIQTPGLWE 184

Query: 120 FPNNDD 125
             N + 
Sbjct: 185 SENQNS 190

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  101 bits (255), Expect = 1e-28
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +T+ YY+ A  C+++F  T++ SF+    W++ V  +        IP  L+
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALV 115

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL     +   + E   K     F     TS KE L V++  K+L +  +++
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFY---RTSVKEDLNVSEVFKYLAEKHLQK 168

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  101 bits (254), Expect = 5e-28
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  +++DA G ++MFDLT+Q SF N   W   +      +       +L+
Sbjct: 91  TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCENPDIVLI 147

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMR--QEG 116
            NK DLP  R+V+         ++   +    ETS   G  V  +++ LLD++M+  ++ 
Sbjct: 148 GNKADLPDQREVNERQARELADKYGIPYF---ETSAATGQNVEKAVETLLDLIMKRMEQC 204

Query: 117 LQNFPNNDDEN 127
           ++     D  N
Sbjct: 205 VEKTQIPDTVN 215

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  100 bits (252), Expect = 9e-28
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML+
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLV 127

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK DL   RQV I + E   KE N + + ETS K G  V    + +   L   E  Q+ 
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDR 186

Query: 121 PNNDDENMVKLSGPAPKVEKK 141
              D  + +KL  P  +   +
Sbjct: 187 SREDMID-IKLEKPQEQPVSE 206

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =   99 bits (250), Expect = 1e-27
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
             GQ     M   Y   A G ++++D+TN  SF+N   W   V      S+  P+   L+
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALV 121

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL H R +       F +E+        S K G  V  
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFL 162

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  100 bits (252), Expect = 1e-27
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+   +  VYY  A G I+ FD+T++ + +N  +W K+         G+  P ++ 
Sbjct: 68  TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVC 123

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
           ANK D+ + +++    +    K  N   + E S K           L  +   +  L   
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182

Query: 121 PN-NDDENMVKLSGPAPKVEKKE 142
            N N +   V     +P+  K  
Sbjct: 183 SNVNLEPTEVNYDYHSPEESKYI 205

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  100 bits (251), Expect = 2e-27
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 131

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGLQN 119
            NK D+  R V  +  E   KE   I + E+S K    VN+    L  ++          
Sbjct: 132 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV 190

Query: 120 FPNNDDENMVKLSGPAPKVEKK 141
              N  E  + ++  +    K 
Sbjct: 191 GVGNGKEGNISINSGSGNSSKS 212

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 99.2 bits (248), Expect = 3e-27
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 10/132 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   + +    +  +L+
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLV 127

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NKCDL   + VD    + F       F+   ETS K    V  S   +   + ++ G  
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFL---ETSAKNATNVEQSFMTMAAEIKKRMGPG 184

Query: 119 NFPNNDDENMVK 130
                 +++ VK
Sbjct: 185 ATAGGAEKSNVK 196

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 99.2 bits (248), Expect = 3e-27
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +T  +++DA G +++FDLTN+ SF N   W   + +     +      +L 
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN---PDIVLC 133

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL   R V   +     +++   +    ETS   G  ++ +++ LLD++M++
Sbjct: 134 GNKSDLEDQRAVKEEEARELAEKYGIPYF---ETSAANGTNISHAIEMLLDLIMKR 186

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 98.3 bits (246), Expect = 3e-27
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL  R V+    +   + +  I + ETS K    V D+   L+  + + 
Sbjct: 115 GNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQH 166

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 98.9 bits (247), Expect = 5e-27
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+G I+ +D+T ++SF +   W +DV         S I  +L+
Sbjct: 85  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLI 140

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116
            NK DL   R+V + + +   + ++ +   ETS K+   V ++   +   L+ + G
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 98.8 bits (247), Expect = 5e-27
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCML 60
           T G  +F  M R+     H  I++F +T++ S +      K +  +K ++ D   IP ML
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVML 119

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
           + NKCD   R+VD  + +   +E     + ETS K    V +   F    L+  E  +N 
Sbjct: 120 VGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKEL--FQE--LLTLETRRNM 174

Query: 121 PNNDDENMVKLSGPAPKVEKK 141
             N D           +V+ K
Sbjct: 175 SLNIDGKRSGKQKRTDRVKGK 195

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 98.0 bits (244), Expect = 1e-26
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+ A   I++FD++N N+      W   +         S    +L+
Sbjct: 100 TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK------ISSNYIIILV 153

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           ANK D    QVDI +++ + +++N + + +TS K G  + +    L + + +
Sbjct: 154 ANKIDKNKFQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 96.5 bits (241), Expect = 3e-26
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF++   +++ +     + D   +P +L+
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
            NKCDLP R VD    +   + +  I + ETS K    V+D+   L+  + + +   +  
Sbjct: 116 GNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKD 174

Query: 122 NNDDENMVK 130
               +   K
Sbjct: 175 GKKKKKKSK 183

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 96.1 bits (240), Expect = 3e-26
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 59  TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE----AQLLLV 114

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK D+  R V  +  E   KE   I + E+S K    VN+    L  ++  +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 96.5 bits (241), Expect = 3e-26
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T + +F +  KW K +D   +         +L+
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLV 137

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK D    R++     E F ++   + + E S K+   V++    L+D ++++
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 96.1 bits (240), Expect = 3e-26
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLV 129

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
            NK DL   RQV + + +   ++ N + + ETS K    V+     L+  +  ++   +
Sbjct: 130 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 97.1 bits (242), Expect = 4e-26
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G +I++D++  +S++N   W  ++           +   L+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLI 124

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK DL H R V   + + F +E+   F    ETS      V+ + + L++ + ++    
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLLFT---ETSALNSENVDKAFEELINTIYQKVSKH 181

Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
                D       +G +      
Sbjct: 182 QMDLGDSSANGNANGASAPNGPT 204

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 96.2 bits (240), Expect = 5e-26
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ +HG II++D+T+Q SF     W +++D   T +    +  +L+
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLV 119

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDS----MKFLLDVLMRQ 114
            NKCDL   R V+ +  + F   +   F+   ETS  +   V D+     + + + + +Q
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFL---ETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 115 EGLQNFPNNDDENMVKLSGPAPKVEKK 141
              +     +D+  V L G +      
Sbjct: 177 NLNETTQKKEDKGNVNLKGQSLTNTGG 203

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 94.9 bits (237), Expect = 9e-26
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCML 60
           T GQ+ ++   + Y  D +G I+++ +T+  SF+        + D+         IP ML
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV----GKVQIPIML 116

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
           + NK DL   R +   + +   +  N   + E+S KE     D  + ++    + +G  +
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 94.9 bits (237), Expect = 9e-26
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G  +F  M R+     H  I+++ +T++ S +      + +       D   IP ML+
Sbjct: 58  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE--IKGDVESIPIMLV 115

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NKCD    R+V  ++ E   +      + ETS K    V +  + LL++  R+ 
Sbjct: 116 GNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKRRT 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 95.4 bits (238), Expect = 1e-25
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  + + Y++ A G ++++D+T + SF N  +W   ++          +P ML+
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLV 139

Query: 62  ANKCDLPH-------RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLM 112
            NK D+         + V  +  E     +   F    ETS K+G  + +++  L   + 
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC---ETSAKDGSNIVEAVLHLAREVK 196

Query: 113 RQ 114
           ++
Sbjct: 197 KR 198

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 94.9 bits (237), Expect = 1e-25
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   Y +D+   ++++D+TN NSF  T KW  DV  +     GS +  ML+
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLV 125

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   RQV   + E   KE N + + ETS K G  V  
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 166

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 94.5 bits (236), Expect = 1e-25
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
              Q+   W+           +I++ +T++ SF+   + +  +           +P +L+
Sbjct: 56  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR---RARQTDDVPIILV 112

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   R+V +++        +   + ETS      V  
Sbjct: 113 GNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQA 153

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 95.0 bits (237), Expect = 1e-25
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 10/118 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ AHG I+++D+T+Q SF N  +W +++D   + +    +  +L+
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLV 144

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116
            NKCDL   + VD    + F       F+   ETS K    V  S   +   + ++ G
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFL---ETSAKNATNVEQSFMTMAAEIKKRMG 199

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 95.0 bits (237), Expect = 1e-25
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G I+M+D+TN+ SF     W   +              +L+
Sbjct: 64  TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLV 119

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NKCD+   R V                + E S K+ + V  + + L+DV+  +      
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICEKMSESLD 178

Query: 121 PNNDDENMVKLSGPAPKVEK 140
             +      K  GP    ++
Sbjct: 179 TADPAVTGAK-QGPQLTDQQ 197

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 94.1 bits (235), Expect = 1e-25
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 115

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   RQV + + +    + N + + ETS K    V+ 
Sbjct: 116 GNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRANVDK 156

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 94.1 bits (235), Expect = 1e-25
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 2   TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
              Q     W+     +     +I+F +T++ SF    +    +           +P +L
Sbjct: 58  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL---RAGRPHHDLPVIL 114

Query: 61  LANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
           + NK DL   R+V + +        +   I   ETS        +
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHI---ETSAALHHNTRE 156

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 94.6 bits (236), Expect = 2e-25
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G ++M+D+ NQ SF     W   +              +L+
Sbjct: 78  TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILV 133

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NKCDL   R V   D      +     + E S KE + V    + L+DV+  +
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICEK 186

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 95.0 bits (237), Expect = 2e-25
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+  I+ +D+T + SF+   +W ++++   +    + +  +L+
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLV 137

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK DL   R+V     E F +  +  ++   ETS KE   V      L   L+ +    
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMYYL---ETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 119 NFPNN 123
              NN
Sbjct: 195 TLVNN 199

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 94.7 bits (236), Expect = 2e-25
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 10/136 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 61  TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 116

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK DL H R V  ++   F +++N  FI   ETS  +   V ++ K +L  + R    +
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFI---ETSALDSTNVEEAFKNILTEIYRIVSQK 173

Query: 119 NFPNNDDENMVKLSGP 134
              +    +    +  
Sbjct: 174 QIADRAAHDESPGNNV 189

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 94.7 bits (236), Expect = 2e-25
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G + +      Y+   +  I++FD+++  SF++   W + +          P+  +L+
Sbjct: 80  TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK-SARPDRERPLRAVLV 138

Query: 62  ANKCDLPH--RQVDINDIECFYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMRQEGLQ 118
           ANK DLP    QV ++  + +   +  + + + S    G   +     +     R    +
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197

Query: 119 NFPNNDDEN 127
                D   
Sbjct: 198 VAAFQDACR 206

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 94.2 bits (235), Expect = 3e-25
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE ++ M   Y +   G + +F + N  SF +   +++ +     + D   +P +L+
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK---RVKDSDDVPMVLV 132

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDLP R VD        K +  I + ETS K    V D
Sbjct: 133 GNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVED 172

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 94.7 bits (236), Expect = 3e-25
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 125

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK D+  R+V       F+++ N + + + S K          +L   L+    L+
Sbjct: 126 GNKVDIKDRKV-KAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 93.8 bits (234), Expect = 3e-25
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 11/116 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+  HG I+++D+T+  SF N  +W  +++  C       +  +L+
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILV 119

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK D P  + V+  D   F  +         ETS KE + V +    + ++++R 
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLF---ETSAKENVNVEEMFNCITELVLRA 172

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 93.7 bits (234), Expect = 3e-25
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  M   Y +  HG +++F + ++ SF    K    +     + D    P +L+
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVLV 120

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   RQV  ++   F   H+ + + E S K  L V++
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDE 161

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 94.2 bits (235), Expect = 3e-25
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE +  +   Y++   G + +F +T   SF  T  +++ +     + +   +P +L+
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLV 125

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
            NK DL   RQV + + +   ++ N + + ETS K    V+    F    LMR+   +  
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKV--FFD--LMREIRARKM 180

Query: 121 PNNDDENMVKLSGPAPKVEKK 141
            ++ ++N  K      K  ++
Sbjct: 181 EDSKEKNGKKKRKSLAKRIRE 201

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 93.8 bits (234), Expect = 4e-25
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G I+M+D+TN+ SF     W   +              +L+
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILV 134

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NKCD+   R V     +   ++     + E S KE + V  + + L+D +  +
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAICDK 187

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 93.4 bits (233), Expect = 5e-25
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+ A   II+FD+TNQ SF+   KW +++  +        +   L 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALA 123

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK DL   R+V   D + + +E+   F+   ETS K    V +    +   L R +  +
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFM---ETSAKTATNVKEIFYEIARRLPRVQPTE 180

Query: 119 N 119
           N
Sbjct: 181 N 181

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 93.0 bits (232), Expect = 5e-25
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G ++++D+TN+ SF N   W ++++   +    + +  M+L
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 119

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NKCD+   RQV     E    ++  I + ETS K  + V ++   L   +  +
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 92.5 bits (231), Expect = 6e-25
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  M  +Y K+  G I+++ L NQ SF++    +  +     +     +P +L+
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI---IRVKRYEKVPVILV 114

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   R+V  ++     +E     + ETS K   MV++
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKSKTMVDE 155

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 93.1 bits (232), Expect = 6e-25
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +  +YY+ +   +I++D+T Q+SF    KW K++           I   + 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMAIA 134

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
            NKCDL   R+V + D + + +        ETS K  + + +  + +   +   +  +N
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 93.1 bits (232), Expect = 6e-25
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML+
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 140

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL H R V  ++   F +++   FI   ETS  +   V  
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFI---ETSALDSTNVEA 181

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 92.6 bits (231), Expect = 6e-25
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q++F +    ++ +     + D   +P +L+
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILV 114

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R V     +   ++     + E+S K  + VN+
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 93.1 bits (232), Expect = 7e-25
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ER+  +T  YY+ A G +++FDLT   ++    +W K++         + I  ML+
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLV 136

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R+V   +   F + +   F+   ETS  +   V  
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFL---ETSALDSTNVEL 177

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 92.6 bits (231), Expect = 8e-25
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T ++++ +   W  D               +L+
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIILI 126

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R V   + + F +E+   F+   E S K G  V D
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLLFL---EASAKTGENVED 167

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 92.2 bits (230), Expect = 1e-24
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T++ ++     W  D      L+  + I  +L 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR---MLASQN-IVIILC 121

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R+V   +   F +E+   F+   ETS   G  V +
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFL---ETSALTGENVEE 162

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 92.2 bits (230), Expect = 1e-24
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+DAH  ++++D+TN+ SF N   W  ++           +  MLL
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLL 122

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK D  H R V   D E   KE+   F+   ETS K GL V+ 
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFM---ETSAKTGLNVDL 163

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 92.3 bits (230), Expect = 2e-24
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T++ ++ +   W  D     TL+  + I  +L 
Sbjct: 81  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR---TLASPN-IVVILC 136

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R+V   +   F +E+   F+   ETS   G  V +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFL---ETSALTGENVEE 177

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 91.4 bits (228), Expect = 2e-24
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +  +YY+D++G I+++D+T+++SF+    W K++        G+ I   ++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 117

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK DL   R V I + E + +         TS K+   + +
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEE 158

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 91.9 bits (229), Expect = 2e-24
 Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCML 60
           T GQ+ ++ +   +    HG ++++ +T+ +SF+      + + +        + +P +L
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH----GKTRVPVVL 134

Query: 61  LANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
           + NK DL P R+V   + +   +      + E+S +E  +       ++  + R E    
Sbjct: 135 VGNKADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 91.5 bits (228), Expect = 2e-24
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F  +TR YY+ A G ++++D+T + +F +   W +D     +    S +  ML+
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLI 132

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R V   + E F +EH   F+   ETS K    V +
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFM---ETSAKTACNVEE 173

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 91.5 bits (228), Expect = 3e-24
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 2   TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
              Q     W+     +     +I+F +T++ SF    +    +           +P +L
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL---RAGRPHHDLPVIL 135

Query: 61  LANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
           + NK DL   R+V + +        +   I   ETS        +
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHI---ETSAALHHNTRE 177

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 91.1 bits (227), Expect = 3e-24
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 2   TEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
           T GQERF   M + YY++ H  + ++D+TN  SF +   W ++          + IP +L
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK---QHLLANDIPRIL 132

Query: 61  LANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTK 95
           + NKCDL    QV  +  + F   H+       ETS K
Sbjct: 133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLF---ETSAK 167

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 90.3 bits (225), Expect = 5e-24
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G ERF  +  +YY+ +   II++D+T + +F     W +++           I   + 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG----PPSIVVAIA 117

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NKCDL   R+V   D + +    + I + ETS K  + +N+
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 158

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 90.3 bits (225), Expect = 6e-24
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE F+ M   Y +   G +I++ +T++ SF++  ++ + +     + D    P +L+
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILV 129

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEG 97
           ANK DL H R+V  +  +    ++N I + ETS K+ 
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDP 165

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 89.5 bits (223), Expect = 8e-24
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++         SP I   L
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-----RQASPNIVIAL 116

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NK DL + R VD  + + +  +++ + + ETS K  + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNE 158

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 89.3 bits (222), Expect = 3e-23
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
            +G+  +  +     +     +I++ +T++ SF+   + +  +           IP +L+
Sbjct: 97  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILV 151

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R+V +++        +  FI   ETS      V +
Sbjct: 152 GNKSDLVRCREVSVSEGRACAVVFDCKFI---ETSAAVQHNVKE 192

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 87.2 bits (217), Expect = 1e-22
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
             G          +       + +F L ++ SF+    +   +   C+  + S +P +L+
Sbjct: 74  EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRL---CSFRNASEVPMVLV 125

Query: 62  ANKCDLP---HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             +  +     R +D +       +     + ET    GL V  
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVER 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 86.1 bits (214), Expect = 3e-22
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T   +      R Y   AH  ++++ + ++ SF ++  + + + L    +    IP +LL
Sbjct: 76  TADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLL 133

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE 96
            NK D+   RQV   +            + E S   
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFG-CLFFEVSACL 168

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 84.5 bits (210), Expect = 9e-22
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 2   TEGQERF--TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM 59
           T   E+   +W      +     +I++ + ++ SF++  + +  +           +P +
Sbjct: 59  TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPII 115

Query: 60  LLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
           L+ NK DL   R+V + +        +   + ETS      V +
Sbjct: 116 LVGNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQHNVAE 158

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 84.6 bits (210), Expect = 9e-22
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD-LKCTLSDGSPIPCML 60
             G          +   A   I +F L ++NSF+   +    +  L+     G  +  + 
Sbjct: 61  EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 61  LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             ++      R V          +     + ET    GL V+ 
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 84.3 bits (209), Expect = 2e-21
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
            +G+  +  +     +     +I++ +T++ SF+   + +  +           IP +L+
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILV 120

Query: 62  ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
            NK DL   R+V +++        +  FI   ETS      V +
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFI---ETSAAVQHNVKE 161

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 83.0 bits (206), Expect = 5e-21
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQE        + +   G ++++D+T++ SF+  L  K  +     +     +  +L+
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL---DEIKKPKNVTLILV 138

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQEGLQ 118
            NK DL H RQV   + E    E     + E S   G   + +    L   + R+  +Q
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 73.5 bits (181), Expect = 2e-17
 Identities = 14/118 (11%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCML 60
             G+E F      +       + ++DL+   +  + +K W  ++  +      S  P +L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVIL 117

Query: 61  LANKCDLPH----RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           +    D+      +       +    +  F    +         +D++  L   ++ +
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 72.9 bits (179), Expect = 3e-17
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +   YY++A   ++++D+T   SF     W K++  +        I   L+
Sbjct: 59  TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIALV 114

Query: 62  ANKCDLPH----RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            NK D       R+V   + E   +E   + + ETS K G  VND
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVND 158

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
             GQE      + +   +   +++ D     +  N   W + ++       G   P +++
Sbjct: 105 FGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKY-----GGKSPVIVV 156

Query: 62  ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117
            NK D      ++   I   +       +   S K G  V    K L   ++  + +
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHPDSI 212

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y D+   ++ F + N+ SF N   KW+ ++       D +    +L
Sbjct: 78  TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKT--VL 132

Query: 61  LANKCDL---PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +  K DL       V   + +   ++   + + E S   K GL
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y+ A   I+ F L ++ S++N   KW  ++        G PI  +L
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPI--VL 117

Query: 61  LANKCDL-----------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +  K DL               +     E   K      + E S  ++E +
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENV 168

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 21/113 (18%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQ+ +  +  ++Y DA   ++ FD+T+ NSF N   +W  +V+  C       +P ++
Sbjct: 89  TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIV 143

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +  K DL                 V  +  +   +    + + E S    + +
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y D    ++ F + + +S +N   KW  +V   C       +P +L
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 134

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           + NK DL                 V   +        +  G+ E S  TKEG+
Sbjct: 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y D    ++ F + + +S +N   KW  +V   C      PI  +L
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPI--IL 134

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +ANK DL                 V  +D            + E S  TKEG+
Sbjct: 135 VANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV 187

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y      +I F L +  SF+N   KW  +V   C        P +L
Sbjct: 85  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIIL 139

Query: 61  LANKCDLPH-------------RQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +  K DL                 +         KE   + + E S  T+ GL
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T G   +  +  + Y D+   +I FD++   +  + L KWK ++   C          +L
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLL 116

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
           +  K DL                 V  +      K+     + E S  + 
Sbjct: 117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 166

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T G   +  +  + Y D+   +I FD++   +  + L KWK ++   C          +L
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLL 137

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
           +  K DL                 V  +      K+     + E S  + 
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 187

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 53.6 bits (129), Expect = 7e-10
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 19/115 (16%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQ+ F  +  + Y +    ++ F + + +SF+N   KW  ++   C     +PI  +L
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPI--IL 129

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
           +  + DL               + V     +   +E     + E S      + +
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 17/109 (15%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE ++ +  + Y+ A   ++ F L ++ S++N L KW  ++          PI  +L
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPI--VL 118

Query: 61  LANKCDL---------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +  K DL             +     E   K+     + E S  T++ +
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNV 167

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD-LKCTLSDGSPIPCMLLA 62
           GQ  +    ++  +   G + + D        N    +   + L         +P ++  
Sbjct: 83  GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142

Query: 63  NKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           NK DLP   + +  +             E    EG  V +++K +  +++ +
Sbjct: 143 NKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y      +I F + N  SF+N   +W  ++           +P +L
Sbjct: 73  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-----VPFLL 127

Query: 61  LANKCDLPHRQ-------------VDINDIECFYKEHNFIGWTETSTKEGLMVND 102
           +  + DL                 + +   +   KE     + E S      +  
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 18  DAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDI 74
              G ++  D++     +F + LK+  ++  +      +  P +++  KCD    R +  
Sbjct: 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEGVERYIRD 218

Query: 75  NDIECFYKEHNFIGWTETSTKEGLMVND 102
                  K++  +   ETS +  + V+ 
Sbjct: 219 AHTFALSKKN--LQVVETSARSNVNVDL 244

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
           T GQE +  +  + Y      +I F L +  SF+N   KW  +V   C        P +L
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIIL 114

Query: 61  LANKCDLPH-------------RQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           +  K DL                 +         KE   + + E S  T+ GL
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 19/110 (17%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCML 60
           T G   +  +  + Y D+   ++ FD++   +  +   KW+ ++   C          +L
Sbjct: 82  TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-----TRVLL 136

Query: 61  LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
           +  K DL                 +         K+     + E S    
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 23/114 (20%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSP-IPCM 59
           T G E +  +  + Y      +I F L +  SF +   KW  +V   C      P  P +
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC------PNTPII 263

Query: 60  LLANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
           L+  K DL                 +         KE   + + E S  T+ GL
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.9
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.89
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.89
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.89
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.89
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.89
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.89
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.88
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.88
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.88
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.88
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.88
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.88
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.88
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.88
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.88
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.88
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.88
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.88
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.88
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.88
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.87
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.87
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.87
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.87
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.87
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.87
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.87
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.87
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.87
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.87
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.87
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.87
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.87
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.87
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.87
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.87
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.86
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.86
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.86
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.86
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.86
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.86
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.86
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.86
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.86
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.85
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.85
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.85
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.85
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.85
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.84
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.84
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.84
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.83
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.83
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.82
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.82
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.82
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.82
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.81
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.81
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.81
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.81
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.81
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.68
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.8
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.79
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.77
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.77
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.76
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.76
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.74
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.74
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.73
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.73
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.73
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.72
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.69
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.69
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.68
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.68
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.68
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.67
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.66
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.65
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.64
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.6
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.6
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.59
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.58
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.58
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.58
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.58
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.58
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.58
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.56
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.56
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.55
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.54
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.53
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.53
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.51
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.51
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.5
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.5
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.49
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.49
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.49
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.49
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.48
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.47
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.46
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.46
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.44
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.44
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.43
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.43
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.42
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.42
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.41
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.4
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.39
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.39
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.38
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.38
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.36
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.35
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.35
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.34
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.32
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.32
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.31
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.31
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.31
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.3
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.29
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.28
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.25
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.21
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.21
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.18
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.18
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.17
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.15
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.13
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.13
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.12
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.11
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.04
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.03
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.03
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.02
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.97
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.97
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.95
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.95
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.92
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.91
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.84
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.84
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.79
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.74
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.71
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.68
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.63
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.59
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.57
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.5
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.47
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.43
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.41
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.34
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.23
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.09
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.08
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.8
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.83
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.76
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.82
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.81
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.49
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	91.7
3cwq_A	209	Para family chromosome partitioning protein; alpha	89.52
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	88.63
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	88.26
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	85.79
3end_A	307	Light-independent protochlorophyllide reductase ir	84.62
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	84.4
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	82.13

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=5.9e-28  Score=166.78  Aligned_cols=111  Identities=38%  Similarity=0.528  Sum_probs=98.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||||+|..+++.|+++++++++|||++++.||+.+..|+..+....    .+++|+||||||+|+.. +.+..+++..
T Consensus        68 DtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~----~~~~piilVgNK~Dl~~~r~V~~~e~~~  143 (216)
T 4dkx_A           68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGNKTDLADKRQVSIEEGER  143 (216)
T ss_dssp             CCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc----CCCCeEEEEeeccchHhcCcccHHHHhh
Confidence            899999999999999999999999999999999999999999886433    36799999999999977 7899999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+.....
T Consensus       144 ~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          144 KAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             HHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             HHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            999999 469999999999999999999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.90  E-value=8.3e-23  Score=139.07  Aligned_cols=112  Identities=32%  Similarity=0.539  Sum_probs=100.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|++||+||+|+.. +.+..+++..
T Consensus        84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~  159 (201)
T 2hup_A           84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGNKSDLSELREVSLAEAQS  159 (201)
T ss_dssp             CCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35799999999999976 6678888999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...++.++++|||+++.|++++|.+|+..+.++..
T Consensus       160 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          160 LAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999986479999999999999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.89  E-value=1.9e-22  Score=132.66  Aligned_cols=110  Identities=16%  Similarity=0.244  Sum_probs=82.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++.+|++++|||++++.++..+..|+..+...   ....++|+++|+||+|+.+ +.+..+....
T Consensus        55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  131 (166)
T 3q72_A           55 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA---RQTDDVPIILVGNKSDLVRSREVSVDEGRA  131 (166)
T ss_dssp             ECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHC---C---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred             ECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEeccccccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999888632   2346899999999999976 6778888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++...+ .+++++||++|.|++++|.+|.+.+.++
T Consensus       132 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          132 CAVVFD-CKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHTT-CEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            999988 5799999999999999999999998765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=136.47  Aligned_cols=112  Identities=34%  Similarity=0.571  Sum_probs=99.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+.......
T Consensus        71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  146 (196)
T 3tkl_A           71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTTKKVVDYTTAKE  146 (196)
T ss_dssp             EECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             ECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886443    35789999999999976 6677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ++..++ .+++++||+++.|++++|.+|.+.+.++...
T Consensus       147 ~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          147 FADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHTT-CCEEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             HHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            999998 5699999999999999999999999987653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.89  E-value=3.6e-22  Score=133.40  Aligned_cols=109  Identities=30%  Similarity=0.449  Sum_probs=98.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+....   ...++|+++|+||+|+.. +.+..+.+..
T Consensus        72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~  148 (183)
T 3kkq_A           72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMILVANKVDLMHLRKVTRDQGKE  148 (183)
T ss_dssp             ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence            899999999999999999999999999999999999999998886433   446899999999999976 6788899999


Q ss_pred             HHHHcCCceEEEeecc-CCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++||+ ++.|++++|..|.+.+.+
T Consensus       149 ~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          149 MATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            999998 569999999 999999999999998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.89  E-value=4.4e-22  Score=133.25  Aligned_cols=112  Identities=28%  Similarity=0.501  Sum_probs=98.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+..+.+..+.+..+
T Consensus        58 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~  134 (189)
T 4dsu_A           58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDLPSRTVDTKQAQDL  134 (189)
T ss_dssp             ECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTSSSCSSCHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccCcccccCHHHHHHH
Confidence            899999999999999999999999999999999999999998887433   44689999999999998767788899999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +..++ .+++++||++|.|++++|.+|...+.++..
T Consensus       135 ~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  169 (189)
T 4dsu_A          135 ARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKE  169 (189)
T ss_dssp             HHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence            99998 569999999999999999999999987653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.89  E-value=2.7e-22  Score=136.04  Aligned_cols=111  Identities=18%  Similarity=0.342  Sum_probs=98.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+. .|+..+....     +++|+++|+||+|+..          
T Consensus        74 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~  148 (201)
T 2q3h_A           74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-----PKAPIILVGTQSDLREDVKVLIELDK  148 (201)
T ss_dssp             ECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSSCEEEEEECGGGGGCHHHHHHHHT
T ss_pred             ECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhchhhhhhhcc
Confidence            89999999999999999999999999999999999986 7998887544     5899999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                         +.+..+....++..++..++++|||+++.|++++|.+|+..+.++..
T Consensus       149 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          149 CKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence               34677888889988886579999999999999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.89  E-value=5.3e-22  Score=134.59  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=97.4

Q ss_pred             CCCcchhhhh-hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||+|++++.. ++..+++++|++|+|||++++.||..+..|+..+....   ...++|+|+|+||+|+.. +.+..+++.
T Consensus        78 Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~  154 (195)
T 3cbq_A           78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGR  154 (195)
T ss_dssp             CCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCTTTCCSCHHHHH
T ss_pred             ecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeechhccccCCcCHHHHH
Confidence            8999998875 88899999999999999999999999999998886432   235799999999999976 667888888


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .++..++ .++++|||+++.|++++|..|+..+.++.
T Consensus       155 ~~a~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          155 HLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhC-CEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999888 57999999999999999999999987544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.89  E-value=2.3e-22  Score=136.95  Aligned_cols=111  Identities=32%  Similarity=0.532  Sum_probs=99.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+....
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  138 (206)
T 2bcg_Y           63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA----TSTVLKLLVGNKCDLKDKRVVEYDVAKE  138 (206)
T ss_dssp             CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .+++++||++|.|++++|.+|...+.+...
T Consensus       139 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          139 FADANK-MPFLETSALDSTNVEDAFLTMARQIKESMS  174 (206)
T ss_dssp             HHHHTT-CCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            998888 469999999999999999999999987643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.89  E-value=8.4e-23  Score=140.41  Aligned_cols=110  Identities=15%  Similarity=0.251  Sum_probs=98.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++|+|||++++.|+.. +..|+..+....     +++|++||+||+|+..          
T Consensus        81 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  155 (214)
T 3q3j_B           81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-----PSTRVLLIGCKTDLRTDLSTLMELSH  155 (214)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-----TTSEEEEEEECGGGGGCHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccchhhhhhhcc
Confidence            899999999999999999999999999999999998 689999987554     6899999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHHHHh
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~~~~  115 (142)
                         +.+..+.+..++..+++.++++|||+++.| ++++|..++..+.+..
T Consensus       156 ~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          156 QKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             cccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence               458889999999999964799999999998 9999999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.88  E-value=2e-22  Score=134.66  Aligned_cols=111  Identities=32%  Similarity=0.527  Sum_probs=85.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~  138 (183)
T 2fu5_C           63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA----SADVEKMILGNKCDVNDKRQVSKERGEK  138 (183)
T ss_dssp             EC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred             cCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccCCccCcCCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    25789999999999976 5677888899


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .+++++||+++.|++++|.+|...+.++..
T Consensus       139 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          139 LALDYG-IKFMETSAKANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             HHHHHT-CEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999988 569999999999999999999999987643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.88  E-value=4.4e-22  Score=132.30  Aligned_cols=112  Identities=28%  Similarity=0.444  Sum_probs=99.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+....
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~  139 (181)
T 2fn4_A           63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQRQVPRSEASA  139 (181)
T ss_dssp             ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998885332   345799999999999976 6677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .+++++||+++.|++++|.+|...+.+...
T Consensus       140 ~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          140 FGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            888888 569999999999999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.88  E-value=4.8e-22  Score=133.99  Aligned_cols=111  Identities=32%  Similarity=0.520  Sum_probs=99.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        76 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~  151 (191)
T 2a5j_A           76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIMLIGNKSDLESRRDVKREEGEA  151 (191)
T ss_dssp             CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCCccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35799999999999976 5677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .+++++||+++.|++++|.+|+..+.++..
T Consensus       152 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          152 FAREHG-LIFMETSAKTACNVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999888 469999999999999999999999987643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.88  E-value=2.5e-22  Score=135.57  Aligned_cols=110  Identities=20%  Similarity=0.379  Sum_probs=98.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~   76 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+ ..|+..+....     .++|+++|+||+|+..   +.+..+.
T Consensus        77 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~  151 (194)
T 3reg_A           77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKVDLRKDGSDDVTKQE  151 (194)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTSEEEEEEECGGGCCTTTTCCCHHH
T ss_pred             ECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccCCCCcccHHH
Confidence            8999999999999999999999999999999999996 78888886544     6799999999999864   5678889


Q ss_pred             HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +..++..+++.++++|||++|.|++++|.+|++.+.+++
T Consensus       152 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          152 GDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999655999999999999999999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.88  E-value=3.1e-22  Score=133.05  Aligned_cols=110  Identities=32%  Similarity=0.587  Sum_probs=99.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++.++|++++|||++++.++..+..|+..+....     +++|+++|+||+|+.. +.+..+....
T Consensus        64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~  138 (181)
T 3tw8_B           64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILVGNKNDDPERKVVETEDAYK  138 (181)
T ss_dssp             EETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----TTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCCCchhcccCHHHHHH
Confidence            899999999999999999999999999999999999999999987544     6899999999999876 5677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .+++++||++|.|++++|.+|...+.+...
T Consensus       139 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          139 FAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             HHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999988 469999999999999999999999987654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=8e-22  Score=133.03  Aligned_cols=107  Identities=19%  Similarity=0.304  Sum_probs=96.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+. .|+..+....     +++|+++|+||+|+..          
T Consensus        72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  146 (194)
T 2atx_A           72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-----PNVPFLLIGTQIDLRDDPKTLARLND  146 (194)
T ss_dssp             CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECTTSTTCHHHHHHHTT
T ss_pred             ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhcccccchhhccc
Confidence            89999999999999999999999999999999999987 7988887544     5899999999999964          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                         +.+..++...++..++..++++|||+++.|++++|.+|++.++
T Consensus       147 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          147 MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence               2567788889999988657999999999999999999998876

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.88  E-value=1.3e-21  Score=129.85  Aligned_cols=114  Identities=25%  Similarity=0.491  Sum_probs=99.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+..........++|+++|+||+|+..+.+..+.+..+
T Consensus        62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~  141 (177)
T 1wms_A           62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW  141 (177)
T ss_dssp             ECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred             eCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHH
Confidence            89999999999999999999999999999999999999999888755432233678999999999997666788888888


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +......+++++||+++.|++++|.++++.+++.
T Consensus       142 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          142 CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            8855546799999999999999999999988753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.3e-21  Score=129.46  Aligned_cols=112  Identities=17%  Similarity=0.288  Sum_probs=91.0

Q ss_pred             CCCcchh--hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHH
Q psy10891          1 MTEGQER--FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~--~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~   77 (142)
                      ||||+++  +..++..+++.+|++++|||++++.++..+..|+..+...   ....++|+++|+||+|+.. +.+..++.
T Consensus        58 D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~~piilv~NK~Dl~~~~~v~~~~~  134 (175)
T 2nzj_A           58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT---HQADHVPIILVGNKADLARCREVSVEEG  134 (175)
T ss_dssp             CCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHC---C----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred             ecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hccCCCCEEEEEEChhhccccccCHHHH
Confidence            8999998  6778889999999999999999999999999999888632   2335799999999999976 66778888


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ..++..++ .++++|||++|.|++++|.+|...+..+..
T Consensus       135 ~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          135 RACAVVFD-CKFIETSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            88888888 579999999999999999999999987653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.88  E-value=1.3e-21  Score=130.16  Aligned_cols=115  Identities=25%  Similarity=0.442  Sum_probs=89.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~   78 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+..........++|+++|+||+|+..  +.+..+.+.
T Consensus        64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~  143 (182)
T 1ky3_A           64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ  143 (182)
T ss_dssp             CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred             ECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence            899999999999999999999999999999999999999998887554323346899999999999954  456788888


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .++......+++++||+++.|++++|.+|...++++.
T Consensus       144 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          144 ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            8888555467999999999999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.88  E-value=7.7e-22  Score=130.03  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=92.0

Q ss_pred             CCCcchhhhh-hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||++++.. ++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.+ +.+..+...
T Consensus        57 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  133 (169)
T 3q85_A           57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGR  133 (169)
T ss_dssp             CCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             ECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcc---cCCCCCEEEEeeCcchhhcccCCHHHHH
Confidence            8999999987 78888999999999999999999999999998887443   334899999999999975 678889999


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .++...+. +++++||+++.|++++|.++++.+..+
T Consensus       134 ~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          134 HLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCC-cEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            99999984 799999999999999999999988654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.88  E-value=6.1e-22  Score=134.43  Aligned_cols=112  Identities=24%  Similarity=0.409  Sum_probs=100.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+.+..
T Consensus        68 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  144 (206)
T 2bov_A           68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN  144 (206)
T ss_dssp             ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeccCccccccccHHHHHH
Confidence            899999999999999999999999999999999999999998887543   345899999999999976 5678888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .+++++||++|.|++++|.+|+..+.+++.
T Consensus       145 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  180 (206)
T 2bov_A          145 RAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKM  180 (206)
T ss_dssp             HHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence            998888 479999999999999999999999987643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=3.1e-22  Score=136.50  Aligned_cols=111  Identities=30%  Similarity=0.461  Sum_probs=98.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~  156 (201)
T 2ew1_A           81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNKIDLAERREVSQQRAEE  156 (201)
T ss_dssp             EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999975 6677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .++++|||++|.|++++|.+|+..+.++..
T Consensus       157 ~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          157 FSEAQD-MYYLETSAKESDNVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            888888 569999999999999999999999987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.88  E-value=3.1e-22  Score=133.52  Aligned_cols=112  Identities=23%  Similarity=0.338  Sum_probs=97.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+.+..
T Consensus        60 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  136 (181)
T 3t5g_A           60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDLHMERVISYEEGKA  136 (181)
T ss_dssp             ECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             eCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcceecHHHHHH
Confidence            899999999999999999999999999999999999999998886443   345799999999999976 6788899999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .+++++||+++.|++++|..|+..+.+...
T Consensus       137 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          137 LAESWN-AAFLESSAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             HHHHTT-CEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            999998 469999999999999999999999987643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=3.1e-22  Score=134.94  Aligned_cols=110  Identities=30%  Similarity=0.544  Sum_probs=99.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...    ...++|+++|+||+|+.. +.+..+....
T Consensus        78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~  153 (191)
T 3dz8_A           78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNKCDMEEERVVPTEKGQL  153 (191)
T ss_dssp             CHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             eCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999998643    235799999999999976 6678888899


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..+++ +++++||+++.|++++|.+|++.+.++.
T Consensus       154 ~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          154 LAEQLGF-DFFEASAKENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            9999984 6999999999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.88  E-value=1.1e-21  Score=131.96  Aligned_cols=107  Identities=14%  Similarity=0.208  Sum_probs=94.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~   77 (142)
                      ||||+++|.     +++++|++++|||++++.||..+..|+..+...   ....++|+++|+||+|+..   +.+..+++
T Consensus        73 Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~v~~~~~  144 (184)
T 3ihw_A           73 DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF---RNASEVPMVLVGTQDAISAANPRVIDDSRA  144 (184)
T ss_dssp             ECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTT---SCGGGSCEEEEEECTTCBTTBCCCSCHHHH
T ss_pred             ECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECcccccccccccCHHHH
Confidence            899999987     888999999999999999999999999998632   2335799999999999842   66888899


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ..++..++..++++|||+++.|++++|.+|++.+.+..
T Consensus       145 ~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999987667999999999999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=3.6e-22  Score=134.50  Aligned_cols=110  Identities=17%  Similarity=0.254  Sum_probs=96.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~   74 (142)
                      ||||+++|..++..+++++|++|+|||++      +..++..+..|+..+..     ...++|+++|+||+|+.. .+..
T Consensus        80 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~-~~~~  153 (198)
T 3t1o_A           80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPD-ALPV  153 (198)
T ss_dssp             ECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTT-CCCH
T ss_pred             eCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhccc-ccCH
Confidence            89999999999999999999999999999      55677777888877631     336899999999999975 4778


Q ss_pred             HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++..++..+++.+++++||+++.|++++|.+|...+.++..
T Consensus       154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            889999999886479999999999999999999999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.88  E-value=6e-22  Score=131.90  Aligned_cols=109  Identities=32%  Similarity=0.492  Sum_probs=96.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    .+++|+++|+||+|+.. +.+..+.+..
T Consensus        67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~  142 (181)
T 2efe_B           67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALAGNKSDLLDARKVTAEDAQT  142 (181)
T ss_dssp             ECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             eCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccccCCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999976 6677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++...+ .+++++||+++.|++++|.+|...+...
T Consensus       143 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          143 YAQENG-LFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            998888 5699999999999999999999877554

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.3e-21  Score=131.66  Aligned_cols=111  Identities=30%  Similarity=0.475  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...   ....++|+++|+||+|+..+.+..+....+
T Consensus        70 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  146 (195)
T 1x3s_A           70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY---CTRNDIVNMLVGNKIDKENREVDRNEGLKF  146 (195)
T ss_dssp             EECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC---CSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred             eCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence            89999999999999999999999999999999999999999988532   233579999999999996666778888889


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +...+ .+++++||+++.|++++|.+|...+.+..
T Consensus       147 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          147 ARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             HHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             HHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence            99888 56999999999999999999999998643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.88  E-value=6.1e-22  Score=132.47  Aligned_cols=111  Identities=28%  Similarity=0.470  Sum_probs=98.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+...+...
T Consensus        65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  140 (186)
T 2bme_A           65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILCGNKKDLDADREVTFLEASR  140 (186)
T ss_dssp             EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998875432    35789999999999965 5677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .+++++||+++.|++++|.++...+.++..
T Consensus       141 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          141 FAQENE-LMFLETSALTGENVEEAFVQCARKILNKIE  176 (186)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence            998888 569999999999999999999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.88  E-value=6.4e-22  Score=131.29  Aligned_cols=108  Identities=29%  Similarity=0.486  Sum_probs=96.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  145 (179)
T 1z0f_A           70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKADLEAQRDVTYEEAKQ  145 (179)
T ss_dssp             ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999975 5677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++||+++.|++++|.+|.+.+.+
T Consensus       146 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          146 FAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            999988 569999999999999999999988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.87  E-value=1.2e-21  Score=128.69  Aligned_cols=108  Identities=26%  Similarity=0.427  Sum_probs=96.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+.+..
T Consensus        57 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1c1y_A           57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQN  133 (167)
T ss_dssp             EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CcCCCcEEEEEECccccccccCCHHHHHH
Confidence            899999999999999999999999999999999999999998886443   346899999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++..++..+++++||++|.|++++|.+|.+.+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             HHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            98888447799999999999999999999876

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.6e-21  Score=134.07  Aligned_cols=111  Identities=16%  Similarity=0.256  Sum_probs=94.8

Q ss_pred             CCCcchh-hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQER-FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||+|++. +..+.+.|++.+|++|+|||++++.||..+..|+..+...   ....++|+|||+||+|+.. +.+..++..
T Consensus        93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~---~~~~~~piilVgNK~DL~~~r~v~~~e~~  169 (211)
T 2g3y_A           93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA---RQTEDIPIILVGNKSDLVRCREVSVSEGR  169 (211)
T ss_dssp             CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTS---GGGTTSCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCcEEEEEEChHHhcCceEeHHHHH
Confidence            8999888 6667888899999999999999999999999998877521   1235799999999999975 667778888


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .++..++ .++++|||++|.||+++|.+|++.+..+.
T Consensus       170 ~~a~~~~-~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          170 ACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            8888888 56999999999999999999999987653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=134.01  Aligned_cols=111  Identities=28%  Similarity=0.466  Sum_probs=98.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+...++..
T Consensus        80 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~  155 (200)
T 2o52_A           80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA----SPNIVVILCGNKKDLDPEREVTFLEASR  155 (200)
T ss_dssp             CCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCcccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998885432    25799999999999965 5677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .++++|||+++.|++++|.+|.+.+.++..
T Consensus       156 ~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  191 (200)
T 2o52_A          156 FAQENE-LMFLETSALTGENVEEAFLKCARTILNKID  191 (200)
T ss_dssp             HHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            898888 569999999999999999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.87  E-value=3.4e-22  Score=135.77  Aligned_cols=112  Identities=19%  Similarity=0.352  Sum_probs=97.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...   ....++|+++|+||+|+.. +.+.......
T Consensus        78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  154 (201)
T 3oes_A           78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPVVLVGNKADLSPEREVQAVEGKK  154 (201)
T ss_dssp             EECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccCccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999988632   2345799999999999976 6778888899


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .+++++||+++.|++++|.+|...+.+...
T Consensus       155 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          155 LAESWG-ATFMESSARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            999998 479999999999999999999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.87  E-value=1.7e-21  Score=130.80  Aligned_cols=112  Identities=29%  Similarity=0.521  Sum_probs=99.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+.+..
T Consensus        76 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (195)
T 3bc1_A           76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSENPDIVLCGNKSDLEDQRAVKEEEARE  152 (195)
T ss_dssp             EECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---SSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             eCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886433   335799999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...++ +++++||+++.|++++|.+|...+.++..
T Consensus       153 ~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          153 LAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9988884 69999999999999999999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.87  E-value=9e-22  Score=129.60  Aligned_cols=109  Identities=32%  Similarity=0.508  Sum_probs=97.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+..+.+..+....+
T Consensus        58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (170)
T 1g16_A           58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDMETRVVTADQGEAL  133 (170)
T ss_dssp             CCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTTCCSCHHHHHHH
T ss_pred             eCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCCcCccCHHHHHHH
Confidence            899999999999999999999999999999999999999998886432    3578999999999996566788888889


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++.++ .+++++||+++.|++++|.+|...+.++
T Consensus       134 ~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          134 AKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99888 4699999999999999999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.87  E-value=5.4e-22  Score=134.00  Aligned_cols=110  Identities=29%  Similarity=0.504  Sum_probs=96.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        81 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilV~NK~Dl~~~~~v~~~~~~~  156 (192)
T 2il1_A           81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETDREITRQQGEK  156 (192)
T ss_dssp             EECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999988885432    35799999999999976 6677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++......+++++||+++.|++++|.+|.+.+.++
T Consensus       157 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          157 FAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            88876446799999999999999999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.87  E-value=1.1e-21  Score=128.78  Aligned_cols=109  Identities=25%  Similarity=0.421  Sum_probs=94.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+++..
T Consensus        58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  134 (168)
T 1u8z_A           58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccccccCccCHHHHHH
Confidence            899999999999999999999999999999999999999998887544   335799999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++||+++.|++++|.++.+.+.+
T Consensus       135 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          135 RADQWN-VNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            998888 469999999999999999999988753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-21  Score=133.11  Aligned_cols=110  Identities=28%  Similarity=0.506  Sum_probs=98.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  138 (203)
T 1zbd_A           63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS----WDNAQVLLVGNKCDMEDERVVSSERGRQ  138 (203)
T ss_dssp             EECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CSSCEEEEEEECTTCTTSCCSCHHHHHH
T ss_pred             ECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCcccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999976 5677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..++ .+++++||+++.|++++|.+|...+.++.
T Consensus       139 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  173 (203)
T 1zbd_A          139 LADHLG-FEFFEASAKDNINVKQTFERLVDVICEKM  173 (203)
T ss_dssp             HHHHHT-CEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             HHHHCC-CeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            999988 47999999999999999999999988754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=131.82  Aligned_cols=110  Identities=27%  Similarity=0.474  Sum_probs=98.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+..    ....++|+++|+||+|+.. +.+..+....
T Consensus        80 Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  155 (193)
T 2oil_A           80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD----HAEATIVVMLVGNKSDLSQAREVPTEEARM  155 (193)
T ss_dssp             EESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT----TSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             eCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCeEEEEEECCCcccccccCHHHHHH
Confidence            8999999999999999999999999999999999999999988853    2235789999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++...+ .++++|||+++.|++++|.+|...+.++.
T Consensus       156 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          156 FAENNG-LLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            998888 46999999999999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.87  E-value=1.9e-22  Score=137.96  Aligned_cols=111  Identities=23%  Similarity=0.378  Sum_probs=94.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+. .|+..+....     +++|+++|+||+|+.. +        
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  137 (212)
T 2j0v_A           63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLRDDKGYLADHTN  137 (212)
T ss_dssp             CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHTCSS
T ss_pred             ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHHhhhCccccccccC
Confidence            89999999999999999999999999999999999986 8998886543     5899999999999865 2        


Q ss_pred             CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      .+..+.+..++..++..++++|||+++.|++++|.+|+..+.++..
T Consensus       138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          138 VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence            2367788888998886579999999999999999999999986543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.87  E-value=2e-21  Score=129.68  Aligned_cols=111  Identities=24%  Similarity=0.423  Sum_probs=99.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++.+|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+++..
T Consensus        72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  148 (187)
T 2a9k_A           72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN  148 (187)
T ss_dssp             ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHH
Confidence            899999999999999999999999999999999999999998887544   334799999999999876 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..++ .+++++||+++.|++++|.+|.+.+.+++
T Consensus       149 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          149 RAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            999988 46999999999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.87  E-value=8.1e-22  Score=130.94  Aligned_cols=111  Identities=25%  Similarity=0.302  Sum_probs=95.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+.....  ...+.| +++|+||+|+.. +.+..+...
T Consensus        62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~iilv~nK~Dl~~~~~~~~~~~~  139 (178)
T 2hxs_A           62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE--ESETQPLVALVGNKIDLEHMRTIKPEKHL  139 (178)
T ss_dssp             ECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH--HHTCCCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred             ECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc--ccCCCCeEEEEEEccccccccccCHHHHH
Confidence            8999999999999999999999999999999999999999988864320  012456 899999999976 567788888


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .++...+ .+++++||+++.|++++|.+|...+.+.
T Consensus       140 ~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          140 RFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            8998888 5699999999999999999999988654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.87  E-value=1.2e-21  Score=131.67  Aligned_cols=110  Identities=31%  Similarity=0.528  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (189)
T 2gf9_A           77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS----WDNAQVILVGNKCDLEDERVVPAEDGRR  152 (189)
T ss_dssp             ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccCCCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999976 5677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..++ .+++++||+++.|++++|.+|...+.++.
T Consensus       153 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          153 LADDLG-FEFFEASAKENINVKQVFERLVDVICEKM  187 (189)
T ss_dssp             HHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            999988 46999999999999999999999987753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.87  E-value=1.3e-21  Score=128.65  Aligned_cols=107  Identities=31%  Similarity=0.556  Sum_probs=96.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....     .+.|+++|+||+|+.. +.+..+.+..
T Consensus        60 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~  134 (168)
T 1z2a_A           60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDSCIKNEEAEG  134 (168)
T ss_dssp             CCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             cCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCcccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886544     6899999999999876 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++...+ .+++++||+++.|++++|.+|.+.+.+
T Consensus       135 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          135 LAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHT-CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             HHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            999888 479999999999999999999988763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.87  E-value=4.2e-22  Score=133.55  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=95.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+ ..|+..+....     +++|+++|+||+|+..          
T Consensus        61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  135 (184)
T 1m7b_A           61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSN  135 (184)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHT
T ss_pred             ECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEEcchhhcchhhHhhhhh
Confidence            8999999999999999999999999999999999998 78988886544     5899999999999863          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeecc-CCCCHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~  113 (142)
                         +.+..+++..++..++..++++|||+ ++.|++++|..+.+.+++
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          136 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence               35778888889988886679999999 689999999999998864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-21  Score=130.55  Aligned_cols=109  Identities=38%  Similarity=0.561  Sum_probs=89.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+....
T Consensus        66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  141 (180)
T 2g6b_A           66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNKVDSAHERVVKREDGEK  141 (180)
T ss_dssp             ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECCSTTSCCCSCHHHHHH
T ss_pred             eCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccCcccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886433    25789999999999976 6677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++...++ +++++||+++.|++++|.+|...+.++
T Consensus       142 ~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          142 LAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9988884 699999999999999999999988654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.87  E-value=6.3e-21  Score=128.73  Aligned_cols=108  Identities=27%  Similarity=0.503  Sum_probs=96.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....      +.|+++|+||+|...+.+..+++..+
T Consensus        99 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~D~~~~~~~~~~~~~~  172 (208)
T 3clv_A           99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY  172 (208)
T ss_dssp             ECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECTTCC-CCSCHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECCCcccccCCHHHHHHH
Confidence            899999999999999999999999999999999999999998886543      49999999999943367788899999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +...+ .+++++||+++.|++++|.+|...+.++.
T Consensus       173 ~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          173 AQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            99988 47999999999999999999999988763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=134.57  Aligned_cols=110  Identities=23%  Similarity=0.410  Sum_probs=82.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------   70 (142)
                      ||||+++|..++..++.++|++++|||++++.++..+. .|+..+....     .++|+++|+||+|+...         
T Consensus        88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  162 (214)
T 2j1l_A           88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKTDLRKDKSLVNKLRR  162 (214)
T ss_dssp             EC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECGGGGSCHHHHHHHHH
T ss_pred             ECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhhccchhhhhhcc
Confidence            89999999999999999999999999999999999986 7988886544     57999999999998652         


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                          .+..+++..+++.++..++++|||++|.|++++|.+|+..+++..
T Consensus       163 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          163 NGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             cccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence                466778888999988657999999999999999999999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.87  E-value=6.4e-22  Score=131.86  Aligned_cols=107  Identities=24%  Similarity=0.363  Sum_probs=93.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC-------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ-------   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~-------   71 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+. .|+..+....     .++|+++|+||+|+.. +.       
T Consensus        62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  136 (182)
T 3bwd_D           62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTKLDLRDDKQFFIDHPG  136 (182)
T ss_dssp             CCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHHC--
T ss_pred             ECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhhcCccccccccc
Confidence            89999999999999999999999999999999999987 7988887543     4899999999999864 22       


Q ss_pred             ---CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         72 ---VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        72 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                         +..+....++..++..++++|||+++.|++++|..|.+.++
T Consensus       137 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          137 AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence               46777888888888657999999999999999999998774

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.87  E-value=3.2e-21  Score=131.04  Aligned_cols=115  Identities=31%  Similarity=0.546  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+..........++|+++|+||+|+..+.+..+.+..+
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  142 (207)
T 1vg8_A           63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW  142 (207)
T ss_dssp             EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH
T ss_pred             eCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHH
Confidence            89999999999999999999999999999999999999999887654321122478999999999997666777888888


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +......+++++||++|.|++++|.+|.+.+.+..
T Consensus       143 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          143 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             HHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            87444467999999999999999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.87  E-value=1.3e-21  Score=128.64  Aligned_cols=106  Identities=30%  Similarity=0.556  Sum_probs=94.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    .+++|+++|+||+|+.. +.+..+....
T Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iilv~nK~Dl~~~~~~~~~~~~~  136 (170)
T 1r2q_A           61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIALSGNKADLANKRAVDFQEAQS  136 (170)
T ss_dssp             EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             eCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35799999999999865 5677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...+ .+++++||+++.|++++|.+|.+.+
T Consensus       137 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          137 YADDNS-LLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            888888 5699999999999999999998765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.86  E-value=1.5e-21  Score=133.87  Aligned_cols=112  Identities=34%  Similarity=0.544  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+.   ......++|+++|+||+|+.. +.+..+.+..
T Consensus        90 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~---~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~  166 (217)
T 2f7s_A           90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCENPDIVLIGNKADLPDQREVNERQARE  166 (217)
T ss_dssp             EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCC---CCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH---HhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999988774   211226799999999999976 5677888899


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .++++|||+++.|++++|.+|...+.++..
T Consensus       167 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          167 LADKYG-IPYFETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             HHHHTT-CCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCC-CcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999988 469999999999999999999999987543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.86  E-value=5.4e-21  Score=129.90  Aligned_cols=107  Identities=23%  Similarity=0.380  Sum_probs=94.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------   70 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+ ..|+..+....     +++|+++|+||+|+...         
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  153 (201)
T 2gco_A           79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRQDEHTRRELAK  153 (201)
T ss_dssp             CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGTTCHHHHHHHHT
T ss_pred             ECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEecHHhhcCccchhhhcc
Confidence            8999999999999999999999999999999999998 68888876543     58999999999998652         


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                          .+..++...++...+..++++|||+++.|++++|.+|.+.++
T Consensus       154 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          154 MKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence                366778888898988657999999999999999999998875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=4.8e-21  Score=130.70  Aligned_cols=110  Identities=31%  Similarity=0.483  Sum_probs=98.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++.++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+..+.+..+....+
T Consensus        75 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  150 (213)
T 3cph_A           75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDMETRVVTADQGEAL  150 (213)
T ss_dssp             CCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT----TTCSEEEEEEECTTCSSCCSCHHHHHHH
T ss_pred             eCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccccCHHHHHHH
Confidence            899999999999999999999999999999999999999998886433    2478999999999996566778888889


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +..+++ +++++||+++.|++++|.+|...+.+..
T Consensus       151 ~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          151 AKELGI-PFIESSAKNDDNVNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             HHHHTC-CEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             HHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            988884 6999999999999999999999988754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.4e-22  Score=135.96  Aligned_cols=111  Identities=28%  Similarity=0.525  Sum_probs=95.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+.+..
T Consensus        68 Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~  143 (223)
T 3cpj_B           68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA----DDNVAVGLIGNKSDLAHLRAVPTEESKT  143 (223)
T ss_dssp             CCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC----C--CEEEEEECCGGGGGGCCSCHHHHHH
T ss_pred             ECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .+++++||+++.|++++|.+|...+.++..
T Consensus       144 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          144 FAQENQ-LLFTETSALNSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             HHHHTT-CEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            998888 569999999999999999999999986543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.86  E-value=4.7e-22  Score=131.06  Aligned_cols=108  Identities=29%  Similarity=0.514  Sum_probs=89.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+....
T Consensus        61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  136 (170)
T 1z08_A           61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKIDLEKERHVSIQEAES  136 (170)
T ss_dssp             ECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH----GGGSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998875432    24789999999999976 5677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++...+ .+++++||+++.|++++|.+|.+.+.+
T Consensus       137 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          137 YAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence            999988 569999999999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.86  E-value=2.7e-21  Score=127.28  Aligned_cols=106  Identities=25%  Similarity=0.470  Sum_probs=95.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...    ..+.+|+++|+||+|+.. +.+..+....
T Consensus        61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~~v~~~~~~~  136 (170)
T 1z0j_A           61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVREVMERDAKD  136 (170)
T ss_dssp             EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCccccccccCHHHHHH
Confidence            89999999999999999999999999999999999999999888643    236789999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...+ .+++++||+++.|++++|.+|.+.+
T Consensus       137 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          137 YADSIH-AIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            998888 5799999999999999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.86  E-value=3.6e-21  Score=129.37  Aligned_cols=108  Identities=32%  Similarity=0.479  Sum_probs=93.5

Q ss_pred             CCCcchhhh-hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||||+++|. .++..+++++|++|+|||++++.|+..+..|+..+....   ...++|+++|+||+|+.. +.+..+...
T Consensus        75 Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~  151 (189)
T 1z06_A           75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAIQVPTDLAQ  151 (189)
T ss_dssp             ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             ECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceeCHHHHH
Confidence            899999999 899999999999999999999999999999998887543   346799999999999976 567788888


Q ss_pred             HHHHHcCCceEEEeeccCC---CCHHHHHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEG---LMVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~---~~i~~l~~~l~~~~~  112 (142)
                      .++..+++ +++++||+++   .|+.++|.+|+..+.
T Consensus       152 ~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          152 KFADTHSM-PLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             HHHHHcCC-EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            89998884 6999999999   999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.86  E-value=3.7e-21  Score=128.42  Aligned_cols=108  Identities=22%  Similarity=0.344  Sum_probs=95.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+. .|+..+....     +++|+++|+||+|+..          
T Consensus        59 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  133 (186)
T 1mh1_A           59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE  133 (186)
T ss_dssp             CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTSCEEEEEECHHHHTCHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-----CCCCEEEEeEcccccccchhhhhhcc
Confidence            89999999999999999999999999999999999987 7888886543     4899999999999854          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                         +.+..+....++..++..++++|||++|.|++++|..|.+.+++
T Consensus       134 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          134 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence               24667788888998886579999999999999999999998853

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=3.7e-21  Score=132.00  Aligned_cols=112  Identities=26%  Similarity=0.405  Sum_probs=97.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++.++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+....
T Consensus        67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  142 (218)
T 4djt_A           67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVCANKIDIKNRQKISKKLVME  142 (218)
T ss_dssp             EECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----CSSSCEEEEEECTTCC----CCHHHHHH
T ss_pred             ecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886543    24589999999999976 5677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL  117 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  117 (142)
                      ++...+ .++++|||++|.|++++|.+|.+.+.++...
T Consensus       143 ~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          143 VLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             HTTTCC-CEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            888877 5699999999999999999999999876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.86  E-value=1.1e-21  Score=134.06  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=95.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+ ..|+..+....     +++|+++|+||+|+..          
T Consensus        82 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  156 (205)
T 1gwn_A           82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSN  156 (205)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHT
T ss_pred             eCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEechhhccchhhhhhhcc
Confidence            8999999999999999999999999999999999998 78988886544     5799999999999862          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeecc-CCCCHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~  113 (142)
                         +.+..+++..+++.++..++++|||+ ++.|++++|..|++.+++
T Consensus       157 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          157 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence               34677888889988875679999999 688999999999998875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.86  E-value=8.1e-21  Score=127.59  Aligned_cols=112  Identities=28%  Similarity=0.449  Sum_probs=88.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++.+|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+..+.+..+.+..+
T Consensus        75 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  151 (190)
T 3con_A           75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNKCDLPTRTVDTKQAHEL  151 (190)
T ss_dssp             ECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred             ECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECCcCCcccCCHHHHHHH
Confidence            899999999999999999999999999999999999999998886543   33479999999999997666778888899


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++.+++ +++++||+++.|++++|.+|.+.+.+...
T Consensus       152 ~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          152 AKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             HHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999884 69999999999999999999999987643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.86  E-value=2.3e-21  Score=127.03  Aligned_cols=109  Identities=27%  Similarity=0.410  Sum_probs=96.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+....
T Consensus        57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1kao_A           57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEGRA  133 (167)
T ss_dssp             ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcccccccCCHHHHHH
Confidence            899999999999999999999999999999999999999988886443   345899999999999865 6677888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++||+++.|++++|.+|...+.+
T Consensus       134 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          134 LAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            888888 469999999999999999999988753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=1.1e-21  Score=132.38  Aligned_cols=109  Identities=28%  Similarity=0.456  Sum_probs=96.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+++..
T Consensus        78 Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~~v~~~~~~~  153 (192)
T 2fg5_A           78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMAIAGNKCDLSDIREVPLKDAKE  153 (192)
T ss_dssp             EECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccccccCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    35799999999999976 6677888999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++...+ .++++|||+++.|++++|.+|.+.+.+.
T Consensus       154 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          154 YAESIG-AIVVETSAKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             HHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred             HHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence            999888 5699999999999999999999877543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.4e-21  Score=129.30  Aligned_cols=111  Identities=26%  Similarity=0.306  Sum_probs=98.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++ ..++..+++++|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+.. +.+..+++..
T Consensus        82 Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~  157 (196)
T 2atv_A           82 DTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSRQVSTEEGEK  157 (196)
T ss_dssp             ECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhh---CCCCCcEEEEEECcccccccccCHHHHHH
Confidence            8999998 7889999999999999999999999999999998886443   346899999999999976 6678888888


Q ss_pred             HHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~~~~  116 (142)
                      ++..++ .++++|||+++. |++++|.+|+..+.++..
T Consensus       158 ~~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~~  194 (196)
T 2atv_A          158 LATELA-CAFYECSACTGEGNITEIFYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhC-CeEEEECCCcCCcCHHHHHHHHHHHHHhhcc
Confidence            998888 569999999999 999999999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.86  E-value=4.5e-21  Score=130.23  Aligned_cols=111  Identities=20%  Similarity=0.349  Sum_probs=89.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCC--CCCCCEEEEEeCCCCCC--CCCCHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD--GSPIPCMLLANKCDLPH--RQVDIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~--~~~~~~~   76 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....   .  ..++|+++|+||+|+..  +.+..+.
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~~piilv~nK~Dl~~~~~~v~~~~  155 (208)
T 2yc2_C           79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR---PDRERPLRAVLVANKTDLPPQRHQVRLDM  155 (208)
T ss_dssp             ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC---SCTTSCCEEEEEEECC-------CCCHHH
T ss_pred             ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh---cccccCCcEEEEEECcccchhhccCCHHH
Confidence            899999999999999999999999999999999999999999986543   1  14799999999999975  4677888


Q ss_pred             HHHHHHHcCCceEEEeeccC-CCCHHHHHHHHHHHHHHHh
Q psy10891         77 IECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~Sa~~-~~~i~~l~~~l~~~~~~~~  115 (142)
                      +..++..++ .++++|||++ +.|++++|.+|...+.+..
T Consensus       156 ~~~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          156 AQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             HHHHHHHTT-CEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence            999999998 5799999999 9999999999999888654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.86  E-value=9.2e-21  Score=123.90  Aligned_cols=108  Identities=26%  Similarity=0.436  Sum_probs=96.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++..+|++++|||++++.++..+..|+..+....   ...++|+++|+||+|+..+.+..+....+
T Consensus        57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  133 (166)
T 2ce2_X           57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKSDLAARTVESRQAQDL  133 (166)
T ss_dssp             ECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred             ECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEchhhhhcccCHHHHHHH
Confidence            899999999999999999999999999999999999999998887543   33479999999999997666778888889


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ++.++ .+++++||+++.|++++|.+|...+.
T Consensus       134 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHHHT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            99888 46999999999999999999998875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=132.01  Aligned_cols=108  Identities=27%  Similarity=0.427  Sum_probs=93.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC------C-CCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP------H-RQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~------~-~~~~   73 (142)
                      ||||+++|..++..+++++|++|+|||++++.++..+..|+..+....    ..++|+++|+||+|+.      . +.+.
T Consensus        83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~~~~~~~v~  158 (199)
T 2p5s_A           83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLVGNKADIRDTAATEGQKCVP  158 (199)
T ss_dssp             ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCC
T ss_pred             ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccccccccccC
Confidence            899999999999999999999999999999999999999998885432    2478999999999985      2 5677


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .+....++...+ .++++|||+++.|++++|.+|+..+.+
T Consensus       159 ~~~~~~~~~~~~-~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          159 GHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            888888998888 479999999999999999999988753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.86  E-value=2.8e-21  Score=130.02  Aligned_cols=109  Identities=18%  Similarity=0.212  Sum_probs=91.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+ ..+++++|++++|||++++.|+..+..|+..+..... ....++|+++|+||+|+.. +.+..+++..
T Consensus        75 Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  152 (187)
T 3c5c_A           75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK-ETQRSIPALLLGNKLDMAQYRQVTKAEGVA  152 (187)
T ss_dssp             ECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             ECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhh-ccCCCCCEEEEEECcchhhcCccCHHHHHH
Confidence            89999999886 6799999999999999999999999999988864420 0114799999999999976 6678888999


Q ss_pred             HHHHcCCceEEEeec-cCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETST-KEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa-~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .++++||| +++.|++++|..|+..+.
T Consensus       153 ~~~~~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          153 LAGRFG-CLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHT-CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CcEEEEeecCccccHHHHHHHHHHHHh
Confidence            999998 47999999 899999999999998875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.86  E-value=1.2e-21  Score=133.54  Aligned_cols=106  Identities=22%  Similarity=0.332  Sum_probs=94.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------   70 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+. .|+..+....     .++|+++|+||+|+...         
T Consensus        84 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  158 (204)
T 4gzl_A           84 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE  158 (204)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECHHHHTCHHHHHHHHH
T ss_pred             ECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhccchhhhhhhhc
Confidence            89999999999999999999999999999999999986 8888886543     68999999999998641         


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                          .+..+....+++..+..++++|||++|.|++++|.+|.+.+
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          159 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             cccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                26778888899999977899999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.85  E-value=1.8e-20  Score=124.57  Aligned_cols=109  Identities=15%  Similarity=0.183  Sum_probs=90.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC--C-CCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP--H-RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~--~-~~~~~~~~   77 (142)
                      ||||+++     ..|++++|++++|||++++.|+..+..|+..+.... .....++|+++|+||+|+.  . +.+..+++
T Consensus        60 Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~  133 (178)
T 2iwr_A           60 EEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLR-GEGRGGLALALVGTQDRISASSPRVVGDARA  133 (178)
T ss_dssp             ECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-CSSSCCCEEEEEEECTTCBTTBCCCSCHHHH
T ss_pred             ECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccccCcCCHHHH
Confidence            8999987     458899999999999999999999999766654332 1223579999999999984  2 56788888


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ..++...+..++++|||++|.|++++|.+++..+.+..
T Consensus       134 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            88888875477999999999999999999999998754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.85  E-value=5e-21  Score=130.02  Aligned_cols=106  Identities=10%  Similarity=0.159  Sum_probs=85.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++.....|+..+...   ....++|+++|+||+|+.. .+..+++..+
T Consensus        75 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~~~~~  150 (198)
T 1f6b_A           75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKIDRPE-AISEERLREM  150 (198)
T ss_dssp             EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEEECCCccc-cCCHHHHHHH
Confidence            89999999999999999999999999999999999999999887522   1235799999999999965 5567777776


Q ss_pred             HHHc----------------CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEH----------------NFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +...                ...++++|||++|.|++++|++|.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          151 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             HTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            6532                23569999999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=4.6e-21  Score=126.06  Aligned_cols=106  Identities=30%  Similarity=0.463  Sum_probs=93.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----CCCCHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----RQVDIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~   76 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+..    +.+..+.
T Consensus        58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~v~~~~  133 (170)
T 1ek0_A           58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIALVGNKIDXLQEGGERKVAREE  133 (170)
T ss_dssp             EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGSSCCCCSCHHH
T ss_pred             ECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCccccccccCCCHHH
Confidence            899999999999999999999999999999999999999998886432    35789999999999864    4567788


Q ss_pred             HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ...++...+ .+++++||+++.|++++|.+|.+.+
T Consensus       134 ~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          134 GEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            888888888 4699999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.85  E-value=2.6e-20  Score=125.98  Aligned_cols=111  Identities=16%  Similarity=0.253  Sum_probs=92.0

Q ss_pred             CCCcchh-hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQER-FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      ||+|++. +..++..|++.+|++++|||++++.||..+..|+..+....   ...++|+|+|+||+|+.. +.+..+...
T Consensus        62 Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~r~v~~~~~~  138 (192)
T 2cjw_A           62 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRXREVSVSEGR  138 (192)
T ss_dssp             CCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCeEEEEEechhhhccccccHHHHH
Confidence            7888877 56678889999999999999999999999999988775322   335799999999999865 667777777


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .++..++ .++++|||++|.||+++|.++++.+..+.
T Consensus       139 ~~a~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          139 AXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence            8888887 56999999999999999999999987654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.85  E-value=2.7e-21  Score=128.27  Aligned_cols=107  Identities=38%  Similarity=0.530  Sum_probs=94.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++.++|++++|||++++.++..+..|+..+....    ..++|+++|+||+|+.. +.+..+....
T Consensus        69 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~  144 (179)
T 2y8e_A           69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLVGNKTDLSDKRQVSTEEGER  144 (179)
T ss_dssp             EECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccCcCCHHHHHH
Confidence            899999999999999999999999999999999999999998886432    25789999999999876 5677788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ++...+ .+++++||+++.|++++|.+|...+.
T Consensus       145 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          145 KAKELN-VMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            888888 56999999999999999999987663

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.2e-20  Score=128.70  Aligned_cols=109  Identities=24%  Similarity=0.367  Sum_probs=95.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+ ..|+..+....     +++|+++|+||+|+..          
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  153 (207)
T 2fv8_A           79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANKKDLRSDEHVRTELAR  153 (207)
T ss_dssp             ECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGGGCHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhhhccccchhhhhh
Confidence            8999999999999999999999999999999999988 68888886543     5899999999999854          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                         +.+..+....++...+..++++|||+++.|++++|.+|.+.++++
T Consensus       154 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          154 MKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence               235677788888888865799999999999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=7.3e-21  Score=128.45  Aligned_cols=111  Identities=28%  Similarity=0.387  Sum_probs=95.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....  ....++|+++|+||+|+..+.+..+....+
T Consensus        62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  139 (199)
T 2gf0_A           62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK--GSVEDIPVMLVGNKCDETQREVDTREAQAV  139 (199)
T ss_dssp             ECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH--SCGGGSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred             eCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECccCCccccCHHHHHHH
Confidence            899999999999999999999999999999999999888887765432  112478999999999997766778888888


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +..++ .+++++||+++.|++++|.+|...+.++
T Consensus       140 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          140 AQEWK-CAFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             HHHHT-CEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             HHHhC-CeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence            88888 4699999999999999999999877554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.84  E-value=1.5e-20  Score=126.84  Aligned_cols=114  Identities=17%  Similarity=0.260  Sum_probs=89.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc----CCCCCCCEEEEEeCCCCCCCCCCHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL----SDGSPIPCMLLANKCDLPHRQVDIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK~D~~~~~~~~~~   76 (142)
                      ||||+++|..++..+++++|++|+|||++++.||..+..|+..+......    ....++|+|+|+||+|+... ...+.
T Consensus        69 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~  147 (199)
T 4bas_A           69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA-KTAAE  147 (199)
T ss_dssp             EECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC-CCHHH
T ss_pred             ECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC-CCHHH
Confidence            89999999999999999999999999999999999999998887532100    00137999999999999752 22222


Q ss_pred             HHHHH------HHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         77 IECFY------KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        77 ~~~~~------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +....      +..+ .++++|||+++.|++++|.+|.+.+.++..
T Consensus       148 ~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          148 LVEILDLTTLMGDHP-FVIFASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             HHHHHTHHHHHTTSC-EEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhcchhhccCCe-eEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            22221      2244 579999999999999999999999988754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.84  E-value=1.2e-20  Score=127.24  Aligned_cols=106  Identities=13%  Similarity=0.154  Sum_probs=87.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|+.....|+..+...   ....++|+++|+||+|+.. .+..+++..+
T Consensus        73 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~~~~~  148 (190)
T 1m2o_B           73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI---AELKDVPFVILGNKIDAPN-AVSEAELRSA  148 (190)
T ss_dssp             ECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcc---hhhcCCCEEEEEECCCCcC-CCCHHHHHHH
Confidence            89999999999999999999999999999999999999998887632   2336799999999999975 4556666655


Q ss_pred             HHHc-----------CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEH-----------NFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +...           ...++++|||++|.|++++|.+|.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          149 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            4421           22569999999999999999998753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.84  E-value=7.9e-21  Score=130.75  Aligned_cols=108  Identities=31%  Similarity=0.529  Sum_probs=94.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....     .++|+++|+||+|+..+.+.. ....+
T Consensus        70 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~-~~~~~  143 (221)
T 3gj0_A           70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVKA-KSIVF  143 (221)
T ss_dssp             EECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-----TTCCEEEEEECTTSSSCSSCG-GGCCH
T ss_pred             eCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCccccccccH-HHHHH
Confidence            899999999999999999999999999999999999999999997654     589999999999997643333 45557


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +...+ .++++|||+++.|++++|.+|...+....
T Consensus       144 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          144 HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             HHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            77777 56999999999999999999999998654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.84  E-value=2.4e-20  Score=122.26  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=84.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|+.....|+..+..   .....++|+++|+||+|+... .....+...
T Consensus        50 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~  125 (164)
T 1r8s_A           50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANKQDLPNA-MNAAEITDK  125 (164)
T ss_dssp             ECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             EcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCeEEEEEECcCCcCC-CCHHHHHHH
Confidence            8999999999999999999999999999999999999899888752   223357999999999999652 222332222


Q ss_pred             HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ..     ..+ .++++|||+++.|++++|.+|...+.++
T Consensus       126 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          126 LGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             TTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             hCcccccCcc-EEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence            11     122 4689999999999999999999887543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.1e-20  Score=123.05  Aligned_cols=108  Identities=26%  Similarity=0.385  Sum_probs=92.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++.++|++++|||++++.++..+..|+..+....  ....++|+++|+||+|+.. +.+.......
T Consensus        57 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~--~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~  134 (172)
T 2erx_A           57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGNKCDESPSREVQSSEAEA  134 (172)
T ss_dssp             ECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH--C---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCCCEEEEEEccccccccccCHHHHHH
Confidence            899999999999999999999999999999999999888887776432  1224799999999999876 5677778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++..++ .+++++||+++.|++++|.+|.+.+
T Consensus       135 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          135 LARTWK-CAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             HHHHHT-CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHHHhC-CeEEEecCCCCcCHHHHHHHHHHHH
Confidence            888888 5699999999999999999998765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.83  E-value=5e-22  Score=134.78  Aligned_cols=108  Identities=34%  Similarity=0.579  Sum_probs=85.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+..    ....++|+++|+||+|+.. +.+..+....
T Consensus        88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~  163 (199)
T 3l0i_B           88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR----YASENVNKLLVGNKCDLTTKKVVDYTTAKE  163 (199)
T ss_dssp             CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS----CC-CCSEEEEC-CCSSCC--CCCCSCC-CH
T ss_pred             ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH----hccCCCCEEEEEECccCCccccCCHHHHHH
Confidence            8999999999999999999999999999999999999999998852    2335799999999999976 5555566777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++ .+++++||+++.|++++|.+|...+.+
T Consensus       164 ~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          164 FADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             HHHTTT-CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            888888 569999999999999999999877643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.82  E-value=5e-20  Score=123.31  Aligned_cols=109  Identities=19%  Similarity=0.200  Sum_probs=84.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+..   .....++|+++|+||+|+... ...+++...
T Consensus        66 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~  141 (181)
T 1fzq_A           66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE---EEKLSCVPVLIFANKQDLLTA-APASEIAEG  141 (181)
T ss_dssp             ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTT---CGGGTTCCEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEECcCcccC-CCHHHHHHH
Confidence            8999999999999999999999999999999999998889887742   112357999999999999752 223333222


Q ss_pred             HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ..     ..+ .++++|||++|.|++++|.+|.+.+.++
T Consensus       142 ~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          142 LNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             hCchhccCCc-eEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            11     122 4699999999999999999999877543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=6.6e-20  Score=122.99  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|+.....|+..+...   ....++|+++|+||+|+.. ....+++...
T Consensus        66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~i~~~  141 (187)
T 1zj6_A           66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKE-CMTVAEISQF  141 (187)
T ss_dssp             ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS---GGGTTCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc---hhhCCCeEEEEEECCCCcC-CCCHHHHHHH
Confidence            89999999999999999999999999999999999999999888632   1235799999999999965 3344454444


Q ss_pred             HHH-----cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKE-----HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ...     .+ .++++|||++|.|++++|.+|++.+...
T Consensus       142 ~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          142 LKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             HTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred             hChhhhcCCC-cEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence            322     23 4699999999999999999999987544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.82  E-value=6.6e-20  Score=120.81  Aligned_cols=108  Identities=16%  Similarity=0.190  Sum_probs=86.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++.....|+..+..   .....++|+++|+||+|+... .....+...
T Consensus        57 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~  132 (171)
T 1upt_A           57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE---EEELRKAILVVFANKQDMEQA-MTSSEMANS  132 (171)
T ss_dssp             EECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhCCCEEEEEEECCCCcCC-CCHHHHHHH
Confidence            8999999999999999999999999999999999998888877752   212357999999999999652 222332222


Q ss_pred             H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .     ...+ .+++++||+++.|++++|.+|.+.+.+
T Consensus       133 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          133 LGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HTGGGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hCchhccCCc-eEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            1     1223 469999999999999999999988754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.82  E-value=1.8e-19  Score=121.12  Aligned_cols=109  Identities=18%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCC--CCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCMLLANKCDLPHRQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~   78 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+....   ..  .++|+++|+||+|+.. ....+.+.
T Consensus        73 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~~~  148 (190)
T 2h57_A           73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP---DIKHRRIPILFFANKMDLRD-AVTSVKVS  148 (190)
T ss_dssp             EECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST---TTTTSCCCEEEEEECTTSTT-CCCHHHHH
T ss_pred             ECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh---hhccCCCeEEEEEeCcCccc-CCCHHHHH
Confidence            899999999999999999999999999999999999999988876321   22  5799999999999965 34455565


Q ss_pred             HHHH--Hc--CCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         79 CFYK--EH--NFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        79 ~~~~--~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .++.  ..  ...++++|||+++.|++++|.+|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          149 QLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            5553  11  12569999999999999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.82  E-value=9.8e-20  Score=121.88  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=87.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+...   ....++|+++|+||+|+... ...+.+...
T Consensus        68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~-~~~~~~~~~  143 (186)
T 1ksh_A           68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE---ERLAGATLLIFANKQDLPGA-LSCNAIQEA  143 (186)
T ss_dssp             EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhC---hhcCCCcEEEEEeCccCCCC-CCHHHHHHH
Confidence            89999999999999999999999999999999999998998887532   22357999999999999652 233333332


Q ss_pred             HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ..     ..+ .+++++||+++.|++++|.+|.+.+.++
T Consensus       144 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          144 LELDSIRSHH-WRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             hChhhccCCc-eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            22     123 4699999999999999999999988643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.82  E-value=9e-20  Score=131.98  Aligned_cols=108  Identities=20%  Similarity=0.318  Sum_probs=95.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+. .|+..+....     .++|+++|+||+|+..          
T Consensus       209 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~  283 (332)
T 2wkq_A          209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE  283 (332)
T ss_dssp             EECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTSCEEEEEECHHHHTCHHHHHHHHH
T ss_pred             eCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-----CCCcEEEEEEchhcccccchhhhccc
Confidence            89999999999999999999999999999999999886 7888886543     4899999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                         +.+..+.+..++...+..++++|||++|.|++++|..|.+.+++
T Consensus       284 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          284 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence               35677888889999986579999999999999999999998864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.81  E-value=4.4e-20  Score=124.96  Aligned_cols=104  Identities=12%  Similarity=0.092  Sum_probs=84.5

Q ss_pred             CCCcchhhhhhh---HhhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC------
Q psy10891          1 MTEGQERFTWMT---RVYYKDAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~---~~~~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------   69 (142)
                      ||||+++|..+.   ..+++++|++|+|||++++  .++..+..|+..+....     .++|++||+||+|+..      
T Consensus        75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~  149 (196)
T 3llu_A           75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSDDHKIE  149 (196)
T ss_dssp             ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-----TTCEEEEEEECGGGSCHHHHHH
T ss_pred             ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeccccCchhhhhH
Confidence            899999998887   8999999999999999997  67777778877764333     6899999999999754      


Q ss_pred             --CCCCHHHHHHHHH----HcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         70 --RQVDINDIECFYK----EHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        70 --~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                        +.+.......++.    ..+ .++++|||++ .|++++|..+++.+
T Consensus       150 ~~~~v~~~~~~~~~~~~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          150 TQRDIHQRANDDLADAGLEKLH-LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHhhhhcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence              2334444556666    455 5799999999 99999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.81  E-value=2.1e-19  Score=119.79  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|+|++++.++..+..|+..+..   .....++|+++|+||+|+.. ....+.+...
T Consensus        68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~  143 (183)
T 1moz_A           68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ---EEELQDAALLVFANKQDQPG-ALSASEVSKE  143 (183)
T ss_dssp             EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTT---SSTTSSCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHc---ChhhCCCeEEEEEECCCCCC-CCCHHHHHHH
Confidence            8999999999999999999999999999999999999999888752   22346899999999999865 2334444433


Q ss_pred             HHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ....    ...++++|||+++.|++++|++|.+.+.++
T Consensus       144 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          144 LNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             hCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            3221    113699999999999999999999988765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.81  E-value=1.2e-19  Score=121.24  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...   ....++|+++|+||+|+.. ....+.+...
T Consensus        71 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~i~~~  146 (181)
T 2h17_A           71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKE-CMTVAEISQF  146 (181)
T ss_dssp             EESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC---hhhCCCeEEEEEECCCccc-CCCHHHHHHH
Confidence            89999999999999999999999999999999999998898877522   1236799999999999965 2334444443


Q ss_pred             HH-----HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ..     ..+ .++++|||+++.|++++|.+|.+.
T Consensus       147 ~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          147 LKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             hCcccccCCc-eEEEEccCCCCcCHHHHHHHHHhh
Confidence            32     122 469999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.81  E-value=1.2e-19  Score=122.06  Aligned_cols=109  Identities=22%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+...   ....++|+++|+||+|+... ...+.+...
T Consensus        73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~-~~~~~~~~~  148 (188)
T 1zd9_A           73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK---PQLQGIPVLVLGNKRDLPGA-LDEKELIEK  148 (188)
T ss_dssp             EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCCEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCCEEEEEECCCCccC-CCHHHHHHH
Confidence            89999999999999999999999999999999999999998887522   12367999999999999652 223332222


Q ss_pred             HHH----cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKE----HNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ...    ....++++|||+++.|++++|.+|...+.+
T Consensus       149 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          149 MNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             hChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            111    112468999999999999999999887644

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.81  E-value=1.1e-19  Score=122.74  Aligned_cols=107  Identities=16%  Similarity=0.249  Sum_probs=80.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+..|+..+..   .....++|+++|+||+|+... ...+.+...
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~  154 (192)
T 2b6h_A           79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFANKQDMPNA-MPVSELTDK  154 (192)
T ss_dssp             ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEECCCCCCC-CCHHHHHHH
Confidence            8999999999999999999999999999999999999999888752   223357999999999999652 222332221


Q ss_pred             HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ..     ..+ .++++|||+++.|++++|.+|++.+.
T Consensus       155 ~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          155 LGLQHLRSRT-WYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             hCcccccCCc-eEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            11     112 46899999999999999999998763

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.68  E-value=2.7e-21  Score=131.52  Aligned_cols=107  Identities=22%  Similarity=0.360  Sum_probs=90.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--------   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--------   70 (142)
                      ||||+++|..++..+++++|++++|||++++.++..+. .|+..+....     .++|+++|+||+|+.. .        
T Consensus        84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~  158 (204)
T 3th5_A           84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE  158 (204)
Confidence            89999999999999999999999999999999999886 7888775322     4799999999999865 2        


Q ss_pred             ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                          .+..+....++...+..++++|||++|.|++++|..|.+.++
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il  204 (204)
T 3th5_A          159 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  204 (204)
Confidence                345566677788887547999999999999999999987653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.80  E-value=1.4e-19  Score=121.55  Aligned_cols=109  Identities=20%  Similarity=0.207  Sum_probs=87.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.++.....|+..+.   ......++|+++|+||+|+... .....+...
T Consensus        72 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~  147 (189)
T 2x77_A           72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL---DEDELRKSLLLIFANKQDLPDA-ASEAEIAEQ  147 (189)
T ss_dssp             EECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHH---TCSTTTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH---hhhhcCCCeEEEEEECCCCcCC-CCHHHHHHH
Confidence            899999999999999999999999999999999999888887775   2223468999999999999652 222332222


Q ss_pred             H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .     ...+ .++++|||+++.|++++|++|.+.+.++
T Consensus       148 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          148 LGVSSIMNRT-WTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             hChhhccCCc-eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            1     1122 3699999999999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.79  E-value=5.2e-20  Score=123.46  Aligned_cols=109  Identities=13%  Similarity=0.222  Sum_probs=87.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC---HH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD---IN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~---~~   75 (142)
                      ||||+++|..+++.|+++++++++|||++++ .++..+..|+..+....     +++|+++|+||+|+.. +.+.   .+
T Consensus        62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~  136 (184)
T 2zej_A           62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVILVGTHLDVSDEKQRKACMSK  136 (184)
T ss_dssp             EECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-----TTCEEEEEEECGGGCCHHHHHHHHHH
T ss_pred             ecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-----CCCcEEEEEECCCcccchhhHHHHHH
Confidence            8999999999999999999999999999997 58999999998886433     5789999999999865 2211   22


Q ss_pred             HHHHHHHHcCCc---eEEEeeccCCC-CHHHHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNFI---GWTETSTKEGL-MVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        76 ~~~~~~~~~~~~---~~~~~Sa~~~~-~i~~l~~~l~~~~~~~  114 (142)
                      ....++..+++.   +++++||+++. ++.+++..|.+.+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          137 ITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             HHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence            334455555643   38999999997 9999999998887654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.78  E-value=1.3e-19  Score=133.08  Aligned_cols=113  Identities=14%  Similarity=0.072  Sum_probs=92.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |||||++|+.+|..||++++++|||||+++          ..++.....|+..+..   .....++|+||++||+|+.. 
T Consensus       199 Dt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~---~~~~~~~piiLv~NK~DL~~~  275 (353)
T 1cip_A          199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN---NKWFTDTSIILFLNKKDLFEE  275 (353)
T ss_dssp             EECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT---CGGGTTSEEEEEEECHHHHHH
T ss_pred             eCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc---CccccCCcEEEEEECcCchhh
Confidence            899999999999999999999999999998          5678888888888752   11235799999999999843 


Q ss_pred             C---------------CCCHHHHHHHHHH----------cCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         70 R---------------QVDINDIECFYKE----------HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 ~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +               .+..+++..++..          .....+++|||+++.||.++|.++...+++...
T Consensus       276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            1               3567777777762          122568899999999999999999999987643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.77  E-value=6.7e-18  Score=114.42  Aligned_cols=113  Identities=30%  Similarity=0.549  Sum_probs=97.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..++.+++++++|+|+++..++..+..|+..+...    ...+.|+++|+||+|+.. +.+....+..
T Consensus        60 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~  135 (199)
T 2f9l_A           60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARA  135 (199)
T ss_dssp             ECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccCcCHHHHHH
Confidence            79999999999999999999999999999999999988898877532    224689999999999976 5667778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ  118 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~  118 (142)
                      ++...++ .++++||+++.+++++|..|...+.+.....
T Consensus       136 l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~  173 (199)
T 2f9l_A          136 FAEKNNL-SFIETSALDSTNVEEAFKNILTEIYRIVSQK  173 (199)
T ss_dssp             HHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            8888884 5999999999999999999999998765433

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.77  E-value=7.7e-19  Score=127.95  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++|+|||++++.+|..+..|+..+.   ......++|+|||+||+|+... ...+.+...
T Consensus       215 Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~---~~~~~~~~piilV~NK~Dl~~~-~~~~~i~~~  290 (329)
T 3o47_A          215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML---AEDELRDAVLLVFANKQDLPNA-MNAAEITDK  290 (329)
T ss_dssp             ECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHH---TCGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHH---hhhccCCCeEEEEEECccCCcc-cCHHHHHHH
Confidence            899999999999999999999999999999999999888877765   2223458999999999999752 223333222


Q ss_pred             HHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ....    ...++++|||++|.||+++|..|++.+.+
T Consensus       291 ~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          291 LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             HTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             hchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            2111    11468999999999999999999988754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.76  E-value=9.9e-20  Score=131.94  Aligned_cols=106  Identities=13%  Similarity=0.089  Sum_probs=78.5

Q ss_pred             CCCcchhhhh---hhHhhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-----
Q psy10891          1 MTEGQERFTW---MTRVYYKDAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-----   70 (142)
Q Consensus         1 Dt~G~e~~~~---~~~~~~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----   70 (142)
                      ||||||+|..   +++.||++++++|+|||++++  .++.....|+..+....     +++|+++++||+|+...     
T Consensus        52 DTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~~R~~  126 (331)
T 3r7w_B           52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVD  126 (331)
T ss_dssp             ECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSHHHHH
T ss_pred             ECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchhhhhh
Confidence            8999999975   579999999999999999997  23333333455443322     68999999999999651     


Q ss_pred             ---CCCHHHHHHHHHH----cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         71 ---QVDINDIECFYKE----HNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        71 ---~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                         .+..+....+++.    ++ ++|++|||++ .+|.+.|..+++.++.
T Consensus       127 ~~R~V~~~~~~~la~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          127 AQRDIMQRTGEELLELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             HHHHHHHHHHHTTSSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             HHHHhhHHHHHHHHhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence               2344445555554    44 5699999998 5899999999876653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.76  E-value=6.1e-19  Score=129.48  Aligned_cols=113  Identities=18%  Similarity=0.145  Sum_probs=88.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |||||++|+.+|..||++++++|||||++          +..++.....|+..+...   ....++|+|||+||+|+.. 
T Consensus       189 DtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~---~~~~~~piiLvgNK~DL~~~  265 (354)
T 2xtz_A          189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFMLFLNKFDIFEK  265 (354)
T ss_dssp             EECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---GGGSSCEEEEEEECHHHHHH
T ss_pred             ECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---cccCCCeEEEEEECcchhhh
Confidence            89999999999999999999999999998          778999988998888521   1235799999999999843 


Q ss_pred             C--CCC-------------------HHHHHHHHHH---------------cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         70 R--QVD-------------------INDIECFYKE---------------HNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ~--~~~-------------------~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +  .+.                   .+....++..               .....+++|||+++.||.++|..+...+++
T Consensus       266 k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          266 KVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             HTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence            1  111                   3445555332               122346899999999999999999999987


Q ss_pred             HhC
Q psy10891        114 QEG  116 (142)
Q Consensus       114 ~~~  116 (142)
                      ...
T Consensus       346 ~~l  348 (354)
T 2xtz_A          346 RNL  348 (354)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.76  E-value=7.2e-19  Score=123.91  Aligned_cols=105  Identities=17%  Similarity=0.314  Sum_probs=84.2

Q ss_pred             CCcchhhhhhhHhhhc---------------------cCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCE
Q psy10891          2 TEGQERFTWMTRVYYK---------------------DAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPC   58 (142)
Q Consensus         2 t~G~e~~~~~~~~~~~---------------------~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~   58 (142)
                      ++|+++|..++..++.                     ++|++|+|||++++  .||..+..|+..+....   ...++|+
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~---~~~~~pi  201 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPI  201 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHH---HHTTCCE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHh---ccCCCCE
Confidence            5688888888888888                     89999999999998  89999999998886431   1257999


Q ss_pred             EEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         59 MLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        59 ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +||+||+|+.. +.+  +....++......++++|||+++.|++++|.+|+..+
T Consensus       202 ilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          202 VVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             EEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999865 322  4666677664235699999999999999999998876

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.74  E-value=1.2e-17  Score=114.11  Aligned_cols=108  Identities=16%  Similarity=0.186  Sum_probs=73.6

Q ss_pred             CCCcchhhhh-hhHhhhccCCEEEEEEeCCChh-hHHHHHHH-HHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH
Q psy10891          1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQN-SFKNTLKW-KKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~   77 (142)
                      ||||+++|.. ++..|++++|++++|||+++.. ++.....| ...+...  .....++|+++|+||+|+..........
T Consensus        60 Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~  137 (214)
T 2fh5_B           60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS--MALKNSPSLLIACNKQDIAMAKSAKLIQ  137 (214)
T ss_dssp             ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH--HTSTTCCEEEEEEECTTSTTCCCHHHHH
T ss_pred             ECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh--hhcccCCCEEEEEECCCCCCcccHHHHH
Confidence            8999999998 8999999999999999999854 45554444 4433211  0123578999999999997522111111


Q ss_pred             HHHHHH------------------------cC-------------CceEEEeeccCC------CCHHHHHHHHHHH
Q psy10891         78 ECFYKE------------------------HN-------------FIGWTETSTKEG------LMVNDSMKFLLDV  110 (142)
Q Consensus        78 ~~~~~~------------------------~~-------------~~~~~~~Sa~~~------~~i~~l~~~l~~~  110 (142)
                      ..+...                        .+             ..+|++|||++|      .||+++|.+|.+.
T Consensus       138 ~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          138 QQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            111110                        11             356999999999      9999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.74  E-value=2.2e-18  Score=128.09  Aligned_cols=112  Identities=15%  Similarity=0.110  Sum_probs=88.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |||||++|+.+|..||++++++|||||+++          ..+|.....|+..+.   +.....++|+|||+||+|+.. 
T Consensus       223 DtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~---~~~~~~~~piiLvgNK~DL~~~  299 (402)
T 1azs_C          223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW---NNRWLRTISVILFLNKQDLLAE  299 (402)
T ss_dssp             EECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH---TCTTCSSCCEEEEEECHHHHHH
T ss_pred             ccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH---hcccCCCCeEEEEEEChhhhhh
Confidence            899999999999999999999999999999          889999999998886   222346899999999999843 


Q ss_pred             CC---C---------------------------CHHHHHHHH-----HHc-------CCceEEEeeccCCCCHHHHHHHH
Q psy10891         70 RQ---V---------------------------DINDIECFY-----KEH-------NFIGWTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        70 ~~---~---------------------------~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~l~~~l  107 (142)
                      +.   +                           ..+....++     ...       ....+++|||+++.||.++|..+
T Consensus       300 ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v  379 (402)
T 1azs_C          300 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC  379 (402)
T ss_dssp             HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHH
Confidence            11   1                           023344442     221       12447799999999999999999


Q ss_pred             HHHHHHHh
Q psy10891        108 LDVLMRQE  115 (142)
Q Consensus       108 ~~~~~~~~  115 (142)
                      ...+++..
T Consensus       380 ~~~I~~~~  387 (402)
T 1azs_C          380 RDIIQRMH  387 (402)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.73  E-value=1.4e-18  Score=128.03  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |||||++|+.+|..|+++++++|||||+++          ..++.....|+..+..   .....++|+||++||+|+.. 
T Consensus       207 Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~---~~~~~~~piILv~NK~DL~~~  283 (362)
T 1zcb_A          207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN---NRVFSNVSIILFLNKTDLLEE  283 (362)
T ss_dssp             EECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT---CGGGTTSEEEEEEECHHHHHH
T ss_pred             eccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc---chhhCCCCEEEEEEChhhhhh
Confidence            899999999999999999999999999999          7789988889888752   21235799999999999853 


Q ss_pred             C----------------CCCHHHHHHHHH-----------HcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         70 R----------------QVDINDIECFYK-----------EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 ~----------------~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +                .+..+.+..++.           ..+ ..+++|||+++.||.++|..+...+++...
T Consensus       284 ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          284 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            1                255666666652           223 458899999999999999999999987653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.73  E-value=2.4e-18  Score=124.96  Aligned_cols=112  Identities=15%  Similarity=0.099  Sum_probs=89.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      ||+||++|+.+|..||++++++|||||++          +..++.....|+..+.   +.....++|++|++||+|+.. 
T Consensus       173 DtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~---~~~~~~~~~iiL~~NK~DL~~~  249 (327)
T 3ohm_A          173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII---TYPWFQNSSVILFLNKKDLLEE  249 (327)
T ss_dssp             EECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH---TSGGGTTCEEEEEEECHHHHHH
T ss_pred             EcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh---hhhccCCceEEEEEECchhhhh
Confidence            89999999999999999999999999654          6678887778887775   222336799999999999854 


Q ss_pred             C----------------CCCHHHHHHHHH----------HcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         70 R----------------QVDINDIECFYK----------EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 ~----------------~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +                .++.+....+..          ..+ ..+++|||+++.||..+|..+...+++...
T Consensus       250 ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          250 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             HTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence            2                356667666632          334 457899999999999999999999998653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.73  E-value=2e-17  Score=109.53  Aligned_cols=106  Identities=18%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..++..+|++++|+|++++...... .++..+.       ..++|+++|+||+|+..  ...+.....
T Consensus        61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~-------~~~~p~ilv~nK~Dl~~--~~~~~~~~~  130 (178)
T 2lkc_A           61 DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAK-------AANVPIIVAINKMDKPE--ANPDRVMQE  130 (178)
T ss_dssp             CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHG-------GGSCCEEEEEETTTSSC--SCHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH-------hCCCCEEEEEECccCCc--CCHHHHHHH
Confidence            8999999999999999999999999999884322222 1222221       14789999999999964  233344333


Q ss_pred             HHHcCC--------ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         81 YKEHNF--------IGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        81 ~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ....+.        .++++|||+++.|++++|.+|...+...+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          131 LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            333221        479999999999999999999998876544

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.72  E-value=1e-17  Score=121.00  Aligned_cols=108  Identities=18%  Similarity=0.172  Sum_probs=87.1

Q ss_pred             CCCcchhh-----hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CC-
Q psy10891          1 MTEGQERF-----TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQ-   71 (142)
Q Consensus         1 Dt~G~e~~-----~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~-   71 (142)
                      ||||+++|     ..++..+++++|++|+|||++++.|+..+..|...+.....  ..+++|+++|+||+|+..   +. 
T Consensus        58 Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~--~~~~~piilv~NK~Dl~~~~~r~~  135 (307)
T 3r7w_A           58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK--YSPDAKIFVLLHKMDLVQLDKREE  135 (307)
T ss_dssp             EECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHH
T ss_pred             ECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEecccccchhhhhH
Confidence            89999999     78899999999999999999999999988777544432111  126899999999999865   22 


Q ss_pred             ---CCHHHHHHHHHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 ---VDINDIECFYKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ---~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                         +..+++..++..+|+  .+++++||++ .++.++|..++..+
T Consensus       136 ~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          136 LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence               455777888888874  6799999999 89999998887644

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.69  E-value=2.1e-16  Score=109.22  Aligned_cols=109  Identities=17%  Similarity=0.125  Sum_probs=80.3

Q ss_pred             CCCcc------hh----hhhhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQ------ER----FTWMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~------e~----~~~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+      ++    +..+ ..++..+|++|+|||++++.++..  ...|+..+...     ..++|+++|+||+|+.
T Consensus        82 DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~  155 (228)
T 2qu8_A           82 DTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKC  155 (228)
T ss_dssp             ECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGC
T ss_pred             ECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccC
Confidence            89999      55    3333 446788999999999999877642  33566666421     2479999999999997


Q ss_pred             C-CCCCHH---HHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         69 H-RQVDIN---DIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        69 ~-~~~~~~---~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      . +.+...   .+..++...+ ..++++|||++|.|++++|.+|...+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          156 NMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             C--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            6 444443   4555666654 246999999999999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.69  E-value=2.1e-17  Score=110.58  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             CCCc-----------chhhhhhhHhhhcc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHHhcccCCCCCCCEE
Q psy10891          1 MTEG-----------QERFTWMTRVYYKD-AHGCIIMFDLTNQNSFKNT-LKWKKD--------VDLKCTLSDGSPIPCM   59 (142)
Q Consensus         1 Dt~G-----------~e~~~~~~~~~~~~-ad~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~p~i   59 (142)
                      ||||           +++|..++..|+++ ++++++|+++.+..++..+ ..|...        +....   ...++|++
T Consensus        50 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pii  126 (190)
T 2cxx_A           50 DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTI  126 (190)
T ss_dssp             ECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEE
T ss_pred             ECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH---HhcCCceE
Confidence            7899           89999999999887 7777777777777777765 566542        21111   12579999


Q ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHcCCc------eEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         60 LLANKCDLPHRQVDINDIECFYKEHNFI------GWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        60 lv~nK~D~~~~~~~~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +|+||+|+....  .+....++..++..      ++++|||++|.|++++|.+|.+.+.+...
T Consensus       127 lv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          127 VAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             EEEECGGGCSCH--HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             EEeehHhccCcH--HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            999999986522  56677888888742      37999999999999999999999877543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=4.8e-17  Score=107.15  Aligned_cols=99  Identities=17%  Similarity=0.136  Sum_probs=77.4

Q ss_pred             CCCcchhhh------hhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFT------WMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~------~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||+++|.      .+...|++  ++|++++|+|+++..+   ...|+..+..       .++|+++|+||+|+.. +.
T Consensus        56 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~~~  125 (165)
T 2wji_A           56 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME-------MGANLLLALNKMDLAKSLG  125 (165)
T ss_dssp             ECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH-------TTCCEEEEEECHHHHHHTT
T ss_pred             ECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh-------cCCCEEEEEEchHhccccC
Confidence            899999885      45577775  8999999999988543   3457766642       3689999999999854 33


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +.. ....++..++ .+++++||++|.|++++|.++.+.+
T Consensus       126 ~~~-~~~~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          126 IEI-DVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CCC-CHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             hhh-HHHHHHHHhC-CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            332 3566778888 5699999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.69  E-value=7.3e-17  Score=108.19  Aligned_cols=102  Identities=15%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             CCCc----------chhhhhhhHhhhccC---CEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891          1 MTEG----------QERFTWMTRVYYKDA---HGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKC   65 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~   65 (142)
                      ||||          ++.|..++..+++.+   |++++|+|.++..+..  .+..|+...          ++|+++|+||+
T Consensus        74 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~  143 (195)
T 3pqc_A           74 DLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKM  143 (195)
T ss_dssp             ECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECG
T ss_pred             ECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEECh
Confidence            7999          899999999999877   9999999998764433  333444332          68999999999


Q ss_pred             CCCC---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         66 DLPH---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        66 D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      |+..   .....+.+..++...+..++++|||+++.|++++|.+|.+.+.
T Consensus       144 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          144 DKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             GGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             hcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            9865   1223345555666655567999999999999999999998874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.68  E-value=4.1e-17  Score=117.54  Aligned_cols=95  Identities=15%  Similarity=0.145  Sum_probs=79.2

Q ss_pred             chhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHH
Q psy10891          5 QERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYK   82 (142)
Q Consensus         5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~   82 (142)
                      |++|+.+++.|++++|++|+|||++++. ++..+..|+..+..       .++|++||+||+|+.+ +.+  +++..++.
T Consensus        71 qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-------~~~piilv~NK~DL~~~~~v--~~~~~~~~  141 (301)
T 1u0l_A           71 LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-------NELETVMVINKMDLYDEDDL--RKVRELEE  141 (301)
T ss_dssp             CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHHHH--HHHHHHHH
T ss_pred             ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEeHHHcCCchhH--HHHHHHHH
Confidence            8999999999999999999999999987 78888999987742       4799999999999965 221  34566776


Q ss_pred             HcCC-ceEEEeeccCCCCHHHHHHHHH
Q psy10891         83 EHNF-IGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        83 ~~~~-~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      .++. .++++|||+++.|++++|..+.
T Consensus       142 ~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          142 IYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            6652 3599999999999999998874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.68  E-value=2.8e-16  Score=105.94  Aligned_cols=106  Identities=28%  Similarity=0.540  Sum_probs=91.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++.++++++|+|+++..++..+..|+..+...    ...+.|+++++||+|+.. +.+.......
T Consensus        84 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~  159 (191)
T 1oix_A           84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARA  159 (191)
T ss_dssp             EECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHH
Confidence            78999999999999999999999999999999999888898776432    224689999999999876 5567788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ++...++ .++++||+++.++.++|+.|.+.+
T Consensus       160 l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          160 FAEKNGL-SFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            8988884 599999999999999999998765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.68  E-value=1.7e-17  Score=121.01  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=86.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |||||++|+.+|..||++++++|||||++          +..++.....|+..+...   ....++|+||++||+|+.. 
T Consensus       167 DtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~---~~~~~~piiLv~NK~DL~~e  243 (340)
T 4fid_A          167 DVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN---EFLKGAVKLIFLNKMDLFEE  243 (340)
T ss_dssp             ECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC---GGGTTSEEEEEEECHHHHHH
T ss_pred             cCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh---hccCCCeEEEEEECchhhhh
Confidence            89999999999999999999999999998          678888888888877532   2336799999999999743 


Q ss_pred             C---------------CCCHHHHHHHHH-Hc-------------------------CCceEEEeeccCCCCHHHHHHHHH
Q psy10891         70 R---------------QVDINDIECFYK-EH-------------------------NFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        70 ~---------------~~~~~~~~~~~~-~~-------------------------~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      +               ....+.+..++. .+                         ..+.+++|||++..+|..+|..+.
T Consensus       244 ki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~  323 (340)
T 4fid_A          244 KLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV  323 (340)
T ss_dssp             HHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             hcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence            0               023444444332 22                         124578999999999999999999


Q ss_pred             HHHHH
Q psy10891        109 DVLMR  113 (142)
Q Consensus       109 ~~~~~  113 (142)
                      ..+++
T Consensus       324 ~~Il~  328 (340)
T 4fid_A          324 DVIMK  328 (340)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.67  E-value=1.1e-16  Score=123.32  Aligned_cols=105  Identities=16%  Similarity=0.223  Sum_probs=85.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||++.|..++..+++++|++|+|+|+++.   +....|+..+....     +++|+|+|+||+|+.. +.+..+.+..
T Consensus       104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-----~~~pvilV~NK~Dl~~~~~v~~~~~~~  175 (535)
T 3dpu_A          104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-----GKSPVIVVMNKIDENPSYNIEQKKINE  175 (535)
T ss_dssp             CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-----SSCCEEEEECCTTTCTTCCCCHHHHHH
T ss_pred             ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-----CCCCEEEEEECCCcccccccCHHHHHH
Confidence            8999999999999999999999999999765   55567888887554     5799999999999976 6667788888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++...+ .++++|||++|.|++++|..+...+.+.
T Consensus       176 ~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          176 RFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             HCGGGT-TCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred             HHHhcC-CceEEEecCcccCHHHHHHHHHHHHhcc
Confidence            888887 4699999999999999999999888653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.66  E-value=2.9e-16  Score=113.36  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             CCCcchh----------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC-C
Q psy10891          1 MTEGQER----------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP-H   69 (142)
Q Consensus         1 Dt~G~e~----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~   69 (142)
                      ||||+.+          +...+..++.++|++++|+|++++.++.....|+..+..       .++|+++|+||+|+. .
T Consensus        65 DTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~~  137 (308)
T 3iev_A           65 DTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIGP  137 (308)
T ss_dssp             ECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSSS
T ss_pred             ECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCCC
Confidence            8999844          446778889999999999999998888887777777742       468999999999997 4


Q ss_pred             CCCCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 RQVDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +....+.+..+...++ +.+++++||++|.|++++|..|...+.
T Consensus       138 ~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          138 AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            5556677777888773 567999999999999999999998874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.65  E-value=1e-15  Score=102.85  Aligned_cols=103  Identities=13%  Similarity=0.092  Sum_probs=76.4

Q ss_pred             CCCc----------chhhhhhhHhhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEG----------QERFTWMTRVYYKDA---HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||          ++.|..++..++..+   |++++|+|++++.++.... ++..+..       .++|+++|+||+|+
T Consensus        75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl  146 (195)
T 1svi_A           75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADK  146 (195)
T ss_dssp             ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGG
T ss_pred             ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECccc
Confidence            8999          999999999999888   9999999999887776643 2222221       47899999999999


Q ss_pred             CCCCCCHHHHHHHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         68 PHRQVDINDIECFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        68 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ............+.+.+   ...+++++||+++.|++++|.+|.+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          147 IPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            76221122222333322   235799999999999999999998876

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.64  E-value=2.2e-16  Score=102.85  Aligned_cols=99  Identities=16%  Similarity=0.083  Sum_probs=73.2

Q ss_pred             CCCcchh-------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQER-------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~-------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~   73 (142)
                      ||||++.       +...+..+++.+|++++|+|++++.+...  .|+..+...      .++|+++|+||+|+...   
T Consensus        55 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~---  123 (161)
T 2dyk_A           55 DTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH---  123 (161)
T ss_dssp             ECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG---
T ss_pred             ECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc---
Confidence            8999987       45567788999999999999998644432  233222211      36899999999998652   


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .+.+..++ .+++.+++++||+++.|++++|.++.+.+
T Consensus       124 ~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          124 ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            23333444 56754799999999999999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.60  E-value=5.2e-15  Score=111.95  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             CCCc----------chhhhhhhHh-hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEG----------QERFTWMTRV-YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~-~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||          +|+|..++.. +++.+|++++|+|+++..+... ..|+..+..       .++|+|+|+||+|+.+
T Consensus       249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~  320 (456)
T 4dcu_A          249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVD  320 (456)
T ss_dssp             TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSC
T ss_pred             ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCC
Confidence            8999          8999988764 7899999999999998654333 345555531       4789999999999976


Q ss_pred             -CCCCHHHHHHHHHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         70 -RQVDINDIECFYKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        70 -~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                       +.+..+++...+...    +..++++|||++|.|++++|..+...+.....
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence             445555555555543    34679999999999999999999998876643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=5.4e-16  Score=103.62  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             CCCcchhhh------hhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFT------WMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~------~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||+++|.      .++..|+.  .+|++++|+|.++   +.....|+..+..       .+.|+++|+||+|+.. +.
T Consensus        60 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~  129 (188)
T 2wjg_A           60 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLG  129 (188)
T ss_dssp             ECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTT
T ss_pred             ECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhcccccc
Confidence            899999885      45677775  5999999999875   4555678777741       4789999999999865 33


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +. .....+++.++ .+++++||+++.|++++|+++...+...
T Consensus       130 ~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          130 IE-IDVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             CC-CCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             ch-HHHHHHHHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            33 34567778888 4699999999999999999999887543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.59  E-value=1.4e-16  Score=105.69  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||++++...        ...+++++|++++|||++++.++.. ..|+..+...    ...++|+++|+||+|+.....
T Consensus        58 Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~----~~~~~p~ilv~NK~Dl~~~~~  132 (172)
T 2gj8_A           58 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR----LPAKLPITVVRNKADITGETL  132 (172)
T ss_dssp             ECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH----SCTTCCEEEEEECHHHHCCCC
T ss_pred             ECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh----cccCCCEEEEEECccCCcchh
Confidence            89998754211        1246899999999999999888764 4677666432    224799999999999853111


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                            .++...+ .++++|||+++.|++++|.+|.+.+.
T Consensus       133 ------~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          133 ------GMSEVNG-HALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             ------EEEEETT-EEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             ------hhhhccC-CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence                  0111223 57999999999999999999987763

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.58  E-value=4.8e-15  Score=115.24  Aligned_cols=105  Identities=16%  Similarity=0.160  Sum_probs=86.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|...+..+++.+|++|+|+|+++..+......|.....        .++|+|+|+||+|+.... .......+
T Consensus        77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~-~~~v~~ei  147 (599)
T 3cb4_D           77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD-PERVAEEI  147 (599)
T ss_dssp             ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc-HHHHHHHH
Confidence            899999999999999999999999999999877777777876664        478999999999996521 23445566


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ...+++.  +++++||++|.|++++|+.|...+...
T Consensus       148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             HHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            6666642  489999999999999999999887543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.58  E-value=1.4e-15  Score=108.05  Aligned_cols=99  Identities=16%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             CCCcchhhh------hhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFT------WMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~------~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||++.|.      .++..|+.  ++|++++|+|+++..++   ..|...+..       .++|+++|+||+|+.. +.
T Consensus        55 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~  124 (272)
T 3b1v_A           55 DLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQG  124 (272)
T ss_dssp             ECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTT
T ss_pred             ECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCC
Confidence            899999887      56677776  69999999999886544   346555532       4799999999999854 33


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +. .....++..++ .+++++||++|.|++++|.++...+
T Consensus       125 ~~-~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          125 KK-INVDKLSYHLG-VPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             CC-CCHHHHHHHHT-SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             cH-HHHHHHHHHcC-CCEEEEEccCCCCHHHHHHHHHHHH
Confidence            33 34566778888 5699999999999999999998764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.58  E-value=2.7e-15  Score=111.92  Aligned_cols=106  Identities=11%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC---HHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD---INDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~   77 (142)
                      ||||+++|...+..++..+|++++|+|++++.++.....|+..+...      ...|+++|+||+|+.+....   .+.+
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~~~i  154 (403)
T 3sjy_A           81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYRQI  154 (403)
T ss_dssp             ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc------CCCCEEEEEECccccchHHHHHHHHHH
Confidence            89999999999999999999999999999876666666676655422      23589999999998652111   1122


Q ss_pred             HHHHHHcC--CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         78 ECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        78 ~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ..++...+  ..+++++||++|.|++++++.|...+.
T Consensus       155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            22222221  256999999999999999999987664

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.58  E-value=4e-16  Score=109.99  Aligned_cols=99  Identities=10%  Similarity=-0.013  Sum_probs=74.7

Q ss_pred             CCCcchhhhh----------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTW----------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~----------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+..+..          ++..|+  .++|++++|+|+++..++..+   ...+.       ..++|+++|+||+|+.
T Consensus        54 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l---~~~l~-------~~~~pvilv~NK~Dl~  123 (256)
T 3iby_A           54 DLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL---TSQLF-------ELGKPVVVALNMMDIA  123 (256)
T ss_dssp             ECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH---HHHHT-------TSCSCEEEEEECHHHH
T ss_pred             eCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH---HHHHH-------HcCCCEEEEEEChhcC
Confidence            8999988874          567777  899999999999986655443   33332       1379999999999986


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         69 HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ...........+...++ .|++++||++|.|++++|.++...
T Consensus       124 ~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          124 EHRGISIDTEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHTTCEECHHHHHHHHC-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CcCCcHHHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence            51111223455777778 579999999999999999999876

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.58  E-value=1.2e-14  Score=112.97  Aligned_cols=104  Identities=15%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|...+..+++.+|++|+|+|+++..+......|.....        .++|+|+|+||+|+.... .......+
T Consensus        79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~-~~~v~~el  149 (600)
T 2ywe_A           79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD-VDRVKKQI  149 (600)
T ss_dssp             CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC-HHHHHHHH
Confidence            899999999999999999999999999999888888778876653        478999999999996522 23345556


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ...+++.  +++++||++|.|+.++|+.|+..+..
T Consensus       150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            6666642  48999999999999999999887753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.58  E-value=4.5e-15  Score=101.74  Aligned_cols=106  Identities=15%  Similarity=0.117  Sum_probs=75.8

Q ss_pred             CCCc----------chhhhhhhHhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEG----------QERFTWMTRVYYKD---AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G----------~e~~~~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||          ++.|..++..|++.   +|++++|+|++++.+... ..|+..+..       .++|+++|+||+|+
T Consensus        85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A           85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDK  156 (223)
T ss_dssp             ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGG
T ss_pred             cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEecccc
Confidence            8999          68888888888877   778999999987644332 345555531       46899999999998


Q ss_pred             CCCCC---CHHHHHHHHHHc------CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         68 PHRQV---DINDIECFYKEH------NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        68 ~~~~~---~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .....   ....+......+      ...+++++||+++.|++++|.+|...+...
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          157 LTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            65111   112222233332      446799999999999999999999988654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.56  E-value=2.5e-15  Score=106.07  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=78.1

Q ss_pred             CCCcchhhhh------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFTW------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~~------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||+..+..      +...|+  .++|++++|+|+++..+..   .|...+..       .++|+++|+||+|+.. +.
T Consensus        58 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~-------~~~pvilv~NK~Dl~~~~~  127 (258)
T 3a1s_A           58 DLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILE-------MEKKVILAMTAIDEAKKTG  127 (258)
T ss_dssp             ECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT-------TTCCEEEEEECHHHHHHTT
T ss_pred             ECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh-------cCCCEEEEEECcCCCCccc
Confidence            8999998875      336666  5899999999999865543   46555531       3799999999999865 33


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +.. ....+++.++ .+++++||++|.|++++|..+...+.
T Consensus       128 i~~-~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          128 MKI-DRYELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CCB-CHHHHHHHHC-SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHcC-CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            332 3567788888 57999999999999999999988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.56  E-value=1.3e-14  Score=109.31  Aligned_cols=107  Identities=9%  Similarity=0.091  Sum_probs=81.5

Q ss_pred             CCCcc----------hhhhhhhH-hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQ----------ERFTWMTR-VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~----------e~~~~~~~-~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+          |+|..++. .+++++|++++|+|++++.++.+. .|+..+..       .++|+++|+||+|+.+
T Consensus       229 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~  300 (436)
T 2hjg_A          229 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVD  300 (436)
T ss_dssp             THHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSC
T ss_pred             ECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCC
Confidence            89998          77877755 488999999999999998888775 57666531       4789999999999876


Q ss_pred             -CCCCHHHH-HHHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 -RQVDINDI-ECFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 -~~~~~~~~-~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                       +....++. ..+...+   ...+++++||++|.|++++|..+...+....
T Consensus       301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          301 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence             33322332 2233332   3367999999999999999999998887654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.56  E-value=3.9e-15  Score=107.23  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=78.9

Q ss_pred             cchhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCC-HHHHHHH
Q psy10891          4 GQERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVD-INDIECF   80 (142)
Q Consensus         4 G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~-~~~~~~~   80 (142)
                      .+++|+.+.+.+++++|++++|+|++++. ++..+..|+..+..       .++|+++|+||+|+.+. .+. .+....+
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~~~v~~~~~~~~~  137 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNEEEKKELERWISI  137 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCccccHHHHHHHHH
Confidence            48899999999999999999999999986 88888999987742       47999999999998652 111 3344555


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLL  108 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  108 (142)
                      ++..+ .+++++||+++.|+++++..+.
T Consensus       138 ~~~~g-~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          138 YRDAG-YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence            66677 4699999999999999998763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.55  E-value=1.5e-15  Score=103.86  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             CCCcchhhhhhhHhhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKD----AHGCIIMFDLT-NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD-   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~----ad~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~-   73 (142)
                      ||||+++|..++..|+++    +|++|+|+|++ ++.++.....|+..+..........++|+++|+||+|+.. +.+. 
T Consensus        61 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  140 (218)
T 1nrj_B           61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK  140 (218)
T ss_dssp             ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHH
T ss_pred             ECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHH
Confidence            899999999999999987    89999999999 8889998888887775432100235799999999999976 2222 


Q ss_pred             -----HHHHHHHHHHcCCceEEEeeccCCCC
Q psy10891         74 -----INDIECFYKEHNFIGWTETSTKEGLM   99 (142)
Q Consensus        74 -----~~~~~~~~~~~~~~~~~~~Sa~~~~~   99 (142)
                           .+.+..++...+ .+++++||+++.+
T Consensus       141 ~~~~l~~~~~~~~~~~~-~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          141 IKDALESEIQKVIERRK-KSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHh-ccccccccccccc
Confidence                 344566666666 4689999998865

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.54  E-value=5.6e-15  Score=106.39  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||+.+        |......+++++|++++|+|++++.+...  .|+ ..+...     ..++|+++|+||+|+....
T Consensus        61 DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-----~~~~p~ilV~NK~Dl~~~~  133 (301)
T 1wf3_A           61 DTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL-----VGKVPILLVGNKLDAAKYP  133 (301)
T ss_dssp             ECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-----TTTSCEEEEEECGGGCSSH
T ss_pred             cCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-----cCCCCEEEEEECcccCCch
Confidence            8999876        56667888999999999999998755443  444 455321     1479999999999986421


Q ss_pred             CCHHHHHHHHHH-cCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKE-HNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                         ..+...... .++.+++++||+++.|++++|+.|...+
T Consensus       134 ---~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          134 ---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             ---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence               102233333 3555789999999999999999998765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.53  E-value=1.5e-15  Score=107.96  Aligned_cols=100  Identities=16%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             CCCcchhhhh----------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTW----------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~----------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+..+..          ++..|+  .++|++++|+|+++..+...+..|+.+.          ++|+++|+||+|+.
T Consensus        56 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~  125 (274)
T 3i8s_A           56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIA  125 (274)
T ss_dssp             ECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHH
T ss_pred             ECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccch
Confidence            8999988773          234444  7999999999999866554433443332          68999999999986


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         69 HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ...........+++.++ .+++++||++|.|++++|..|...+
T Consensus       126 ~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          126 EKQNIRIEIDALSARLG-CPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             HHTTEEECHHHHHHHHT-SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             hhhhHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            41111223456777788 5799999999999999999887655

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.53  E-value=2e-14  Score=109.22  Aligned_cols=100  Identities=15%  Similarity=0.047  Sum_probs=65.8

Q ss_pred             CCCcchhhhhhh--------HhhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMT--------RVYYKDAHGCIIMFDLTNQNSFKNT---LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~--------~~~~~~ad~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||++++...+        ..++.++|++++|+|++++.++...   ..|+..+         .++|+|+|+||+|+..
T Consensus       287 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---------~~~piIvV~NK~Dl~~  357 (476)
T 3gee_A          287 DTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---------PAAKFLTVANKLDRAA  357 (476)
T ss_dssp             C--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---------TTSEEEEEEECTTSCT
T ss_pred             ECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---------CCCCEEEEEECcCCCC
Confidence            899998877554        3468899999999999998877533   3344433         3789999999999965


Q ss_pred             CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ..  ......+... ++.++++|||+++.|++++|.+|...+.
T Consensus       358 ~~--~~~~~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          358 NA--DALIRAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TT--HHHHHHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             cc--chhHHHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            21  1122334333 2356999999999999999999999885

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.51  E-value=1.4e-13  Score=101.22  Aligned_cols=107  Identities=17%  Similarity=0.196  Sum_probs=80.1

Q ss_pred             CCCcchhhh---------hhhHhhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFT---------WMTRVYYKDAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~---------~~~~~~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+..+.         .....+...+|++++|+|++++.  ++.....|+..+....     .+.|+++|+||+|+..
T Consensus       220 Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-----~~~piilV~NK~Dl~~  294 (357)
T 2e87_A          220 DTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-----KDLPFLVVINKIDVAD  294 (357)
T ss_dssp             ECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-----TTSCEEEEECCTTTCC
T ss_pred             eCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-----CCCCEEEEEECcccCC
Confidence            799975532         12224456799999999998876  6777778888886433     3799999999999865


Q ss_pred             CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      .. ..+....++...+ .++++|||++|.|+++++.+|...+...
T Consensus       295 ~~-~~~~~~~~~~~~~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          295 EE-NIKRLEKFVKEKG-LNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             HH-HHHHHHHHHHHTT-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHhcC-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            11 1234455566666 5699999999999999999999988654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.51  E-value=1.2e-13  Score=106.06  Aligned_cols=61  Identities=18%  Similarity=0.094  Sum_probs=51.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+++|...+..+++.+|++|+|+|+++..+......|.....        .++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--------~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--------RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--------TTCCEEEEEECTTSCC
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999998877777665543321        4789999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.50  E-value=4.4e-14  Score=96.18  Aligned_cols=109  Identities=7%  Similarity=-0.057  Sum_probs=68.6

Q ss_pred             CCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCC-CCCCCEEEEEeCC-CCCCCCCCHHHHHH
Q psy10891          2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD-GSPIPCMLLANKC-DLPHRQVDINDIEC   79 (142)
Q Consensus         2 t~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~   79 (142)
                      .+||++++.+|+.||.++|++|||+|++|..-++ ...-+.++........ ..++|+++.+||. |+.. ..+..++..
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams~~EI~e  186 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLAH  186 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCCHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCCHHHHHH
Confidence            4699999999999999999999999999874333 2222222222112221 3689999999995 6753 455555554


Q ss_pred             HHHHc--C-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEH--N-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~--~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .....  . .-.+..|||.+|+|+.+.++||+..+.
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            43221  1 122778999999999999999987663

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.50  E-value=1.1e-13  Score=105.41  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~   74 (142)
                      ||||+++|...+..++..+|++++|+|+++   +.+.+.+.    .+..       .++|+|+|+||+|+.+.   ....
T Consensus        79 DtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~-------~~ip~IvviNK~Dl~~~~~~~~~~  147 (482)
T 1wb1_A           79 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH-------FNIPIIVVITKSDNAGTEEIKRTE  147 (482)
T ss_dssp             CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH-------TTCCBCEEEECTTSSCHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH-------cCCCEEEEEECCCcccchhHHHHH
Confidence            899999999999999999999999999988   44544332    2211       36889999999998651   1122


Q ss_pred             HHHHHHHHHc-C--CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         75 NDIECFYKEH-N--FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        75 ~~~~~~~~~~-~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++..++... +  ..+++++||++|.|+.++++.|...+.
T Consensus       148 ~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          148 MIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            3344455554 2  256999999999999999999998876

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.49  E-value=1.2e-14  Score=108.87  Aligned_cols=101  Identities=15%  Similarity=0.046  Sum_probs=77.9

Q ss_pred             CCCcchhhhhh-------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTWM-------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~-------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~   73 (142)
                      ||||+++|..+       +..++.++|++++|+|++...   ....|+..+..       .++|+++|+||+|+.... .
T Consensus        89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~-------~~~piIvV~NK~Dl~~~~-~  157 (423)
T 3qq5_A           89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKE-------MEIPFVVVVNKIDVLGEK-A  157 (423)
T ss_dssp             ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHH-------TTCCEEEECCCCTTTTCC-C
T ss_pred             ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHh-------cCCCEEEEEeCcCCCCcc-H
Confidence            89999988765       455889999999999994332   23467766642       278999999999997622 2


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .+....++..++ .+++++||+++.|++++|..|.+.+.+
T Consensus       158 ~~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          158 EELKGLYESRYE-AKVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             THHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            255556666667 469999999999999999999988843

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.49  E-value=7.3e-14  Score=105.23  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=73.9

Q ss_pred             CCCcchh---------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQER---------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e~---------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||++.         +..++..++++||++++|+|++++.+..+  .|+..+.+.      .++|+++|+||+|+... 
T Consensus        55 DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~------~~~p~ilv~NK~D~~~~-  125 (439)
T 1mky_A           55 DTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK------STVDTILVANKAENLRE-  125 (439)
T ss_dssp             ECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH------HTCCEEEEEESCCSHHH-
T ss_pred             ECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH------cCCCEEEEEeCCCCccc-
Confidence            8999764         45567889999999999999988665543  222222211      26899999999997421 


Q ss_pred             CCHHHH-HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         72 VDINDI-ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        72 ~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      . .... ..+. ..++.+++++||++|.|+.++++.+...+.+.
T Consensus       126 ~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          126 F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence            0 1222 3333 45654689999999999999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.49  E-value=1.8e-13  Score=104.13  Aligned_cols=100  Identities=11%  Similarity=0.057  Sum_probs=75.4

Q ss_pred             CCCcch-hhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQE-RFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e-~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||++ ++..        .+..+++.+|++|+|+|++++.++.... ++..+         .++|+++|+||+|+.. .
T Consensus       297 DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l---------~~~piivV~NK~DL~~-~  365 (482)
T 1xzp_A          297 DTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI---------KNKRYLVVINKVDVVE-K  365 (482)
T ss_dssp             ESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH---------TTSSEEEEEEECSSCC-C
T ss_pred             ECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh---------cCCCEEEEEECccccc-c
Confidence            899998 6542        2456889999999999999987776643 33333         3789999999999964 2


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +..+.+..++. .+ .++++|||+++.|+++++.+|...+..
T Consensus       366 ~~~~~~~~~~~-~~-~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          366 INEEEIKNKLG-TD-RHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             CCHHHHHHHHT-CS-TTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             cCHHHHHHHhc-CC-CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34445444432 22 469999999999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.49  E-value=4.8e-14  Score=103.11  Aligned_cols=108  Identities=12%  Similarity=0.142  Sum_probs=82.6

Q ss_pred             CCCcchh----hhhhhHhhhc---cCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQER----FTWMTRVYYK---DAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~----~~~~~~~~~~---~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||||+..    +..++..|++   .+|++|+|+|+++   +.++..+..|+.++..+.  ....++|+++|+||+|+.. 
T Consensus       212 DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~--~~l~~~p~ilV~NK~Dl~~-  288 (342)
T 1lnz_A          212 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN--LRLTERPQIIVANKMDMPE-  288 (342)
T ss_dssp             EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC--SSTTTSCBCBEEECTTSTT-
T ss_pred             cCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh--hhhcCCCEEEEEECccCCC-
Confidence            7888654    4446566655   4999999999998   778888889998886432  1125799999999999864 


Q ss_pred             CCCHHHHHHHHHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         71 QVDINDIECFYKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                        ..+....+++.+.. .+++++||+++.|+++++.+|...+.+
T Consensus       289 --~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          289 --AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             --HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             --CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence              12445666666652 358999999999999999999988853

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.48  E-value=1.3e-13  Score=102.99  Aligned_cols=102  Identities=15%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC--CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ--VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~--~~   73 (142)
                      |||||++|...+...+..+|++|+|+|+++    +.+++.+..| ..+         ...|+|+|+||+|+.. ..  ..
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l---------~~~~iivv~NK~Dl~~~~~~~~~  156 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL---------GIDKIIIVQNKIDLVDEKQAEEN  156 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT---------TCCCEEEEEECTTSSCTTTTTTH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc---------CCCeEEEEEEccCCCCHHHHHHH
Confidence            899999999988888889999999999995    4455544322 111         2358999999999976 21  22


Q ss_pred             HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .+++..++...  ...+++++||+++.|++++++.|...+.
T Consensus       157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            34555555542  2256999999999999999999987654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.47  E-value=2.6e-14  Score=101.30  Aligned_cols=102  Identities=21%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             CCCcchhhhh------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFTW------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~~------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||+..|..      ++..|+  .++|++++|+|+++...   ...|...+...      ..+|+++|+||+|+.. +.
T Consensus        56 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~~  126 (271)
T 3k53_A           56 DLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFEM------EVKNIILVLNKFDLLKKKG  126 (271)
T ss_dssp             ECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHHT------TCCSEEEEEECHHHHHHHT
T ss_pred             eCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHhc------CCCCEEEEEEChhcCcccc
Confidence            8999998877      667777  68999999999988532   22344444311      2399999999999754 22


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ... ....+.+.++ .+++++||++|.|+.++|..+...+..
T Consensus       127 ~~~-~~~~l~~~lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          127 AKI-DIKKMRKELG-VPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             CCC-CHHHHHHHHS-SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             cHH-HHHHHHHHcC-CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            222 2566777888 579999999999999999999988744

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.46  E-value=5.9e-13  Score=103.55  Aligned_cols=103  Identities=19%  Similarity=0.214  Sum_probs=75.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC---
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD---   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~---   73 (142)
                      ||||+++|..++..+++.+|++|+|+|+++   +.|+..+..    +..       .++|+|+++||+|+.. ....   
T Consensus        76 DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~  144 (594)
T 1g7s_A           76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGR  144 (594)
T ss_dssp             CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCC
Confidence            899999999999999999999999999999   666654432    211       4789999999999854 1100   


Q ss_pred             ----------HH----------HHHHHHHHcC--------------CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         74 ----------IN----------DIECFYKEHN--------------FIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        74 ----------~~----------~~~~~~~~~~--------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                                ..          .+.......+              ..+++.+||++|.|+.+++++|...+...
T Consensus       145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                      00          1111122222              23799999999999999999999887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.46  E-value=1e-14  Score=112.03  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=76.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~   78 (142)
                      ||||+++|..++..++..+|++++|+|+++..+......|. .+.       ..++|+|+|+||+|+..  .......+.
T Consensus        58 DTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~-~~~-------~~~vPiIVViNKiDl~~~~~~~v~~~l~  129 (537)
T 3izy_P           58 DTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQ-HAK-------DAHVPIVLAINKCDKAEADPEKVKKELL  129 (537)
T ss_dssp             ECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHH-HHH-------TTTCCEEECCBSGGGTTTSCCSSSSHHH
T ss_pred             ECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHH-HHH-------HcCCcEEEEEecccccccchHHHHHHHH
Confidence            89999999999999999999999999999876555544442 221       14789999999999865  111112221


Q ss_pred             HH---HHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         79 CF---YKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        79 ~~---~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .+   +..++ ..+++++||++|.|++++|+.|...+.
T Consensus       130 ~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          130 AYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             HTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             hhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            11   11221 247899999999999999999987763

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.44  E-value=6.8e-14  Score=105.31  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             CCCcch--------hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQE--------RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e--------~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||++        ++..++..++++||++++|+|++++.++.+  .|+..+.      ...++|+++|+||+|+.....
T Consensus        57 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l------~~~~~pvilv~NK~D~~~~~~  128 (436)
T 2hjg_A           57 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKIL------YRTKKPVVLAVNKLDNTEMRA  128 (436)
T ss_dssp             C---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHH------TTCCSCEEEEEECCCC-----
T ss_pred             ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHH------HHcCCCEEEEEECccCccchh
Confidence            899986        788888999999999999999998777654  3443332      124789999999999864111


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                         ....+. ..++.+++++||++|.|+.++++++...+.
T Consensus       129 ---~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          129 ---NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             ---CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             ---hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence               111122 345446899999999999999999988775

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.44  E-value=9.3e-14  Score=103.66  Aligned_cols=91  Identities=11%  Similarity=0.093  Sum_probs=68.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~   75 (142)
                      ||||+++|...+..++..+|++|+|+|+++...... ..|+..+..       .++| +++|+||+|+.. ..   ....
T Consensus        81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-------~~ip~iivviNK~Dl~~~~~~~~~~~~  152 (405)
T 2c78_A           81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-------VGVPYIVVFMNKVDMVDDPELLDLVEM  152 (405)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-------TTCCCEEEEEECGGGCCCHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEEECccccCcHHHHHHHHH
Confidence            899999999999999999999999999988654433 445544431       3678 899999999863 11   1123


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCCC
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGLM   99 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~~   99 (142)
                      ++..++..+++    .+++++||+++.|
T Consensus       153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          153 EVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            45566777664    5799999999987

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.43  E-value=3.6e-13  Score=101.52  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=69.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC--
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNS---FK---NTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ--   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~--   71 (142)
                      |||||++|...+..+++.+|++++|+|+++...   |.   .....+..+.       ..++| +|+|+||+|+....  
T Consensus       101 DTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-------~~~v~~iIvviNK~Dl~~~~~~  173 (439)
T 3j2k_7          101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-------TAGVKHLIVLINKMDDPTVNWS  173 (439)
T ss_pred             ECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-------HcCCCeEEEEeecCCCcccchH
Confidence            899999999999999999999999999988532   11   1112222221       13577 99999999985311  


Q ss_pred             -----CCHHHHHHHHHHcCC-----ceEEEeeccCCCCHHHHHH
Q psy10891         72 -----VDINDIECFYKEHNF-----IGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        72 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  105 (142)
                           ...+.+..+++..++     .+++++||++|.|+.++++
T Consensus       174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                 122334445555553     4699999999999999765

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.43  E-value=1.6e-13  Score=102.18  Aligned_cols=103  Identities=12%  Similarity=0.075  Sum_probs=75.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~   75 (142)
                      ||||+++|...+..+++.+|++|+|+|+++.......+.| ..+..       .++| +|+++||+|+.. ..   ...+
T Consensus        72 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-------~~vp~iivviNK~Dl~~~~~~~~~~~~  143 (397)
T 1d2e_A           72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-------IGVEHVVVYVNKADAVQDSEMVELVEL  143 (397)
T ss_dssp             ECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-------TTCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             ECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCeEEEEEECcccCCCHHHHHHHHH
Confidence            8999999999999999999999999999986444433333 33321       3688 689999999863 11   1123


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCCCC----------HHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEGLM----------VNDSMKFLLDVL  111 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~~~----------i~~l~~~l~~~~  111 (142)
                      ++..+++.+++    .+++++||+++.+          +.++++.|...+
T Consensus       144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            55567777764    4799999999764          778887777655

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.42  E-value=3.4e-13  Score=100.75  Aligned_cols=102  Identities=13%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~   73 (142)
                      ||||+++|...+...+..+|++++|+|+++    +.+.+.+..| ..+         ...|+|+|+||+|+....   ..
T Consensus        89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~---------~~~~iivviNK~Dl~~~~~~~~~  158 (410)
T 1kk1_A           89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII---------GQKNIIIAQNKIELVDKEKALEN  158 (410)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH---------TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc---------CCCcEEEEEECccCCCHHHHHHH
Confidence            899999999988888889999999999995    3455544322 222         235899999999986511   11


Q ss_pred             HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      .+++..++...  ...+++++||+++.|++++++.|...+.
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            23334444431  2357999999999999999999987664

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.42  E-value=9.4e-14  Score=104.55  Aligned_cols=104  Identities=12%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCCCCC-------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPHRQV-------   72 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~-------   72 (142)
                      ||||+++|...+..+++.+|++|+|+|+++ .+|+....|......+.......++ |+|+|+||+|+.....       
T Consensus        90 DtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~  168 (435)
T 1jny_A           90 DAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE  168 (435)
T ss_dssp             CCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred             ECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence            899999999999999999999999999998 6776544333222211100011244 6899999999864111       


Q ss_pred             CHHHHHHHHHHcCC----ceEEEeeccCCCCHHHHHH
Q psy10891         73 DINDIECFYKEHNF----IGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        73 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~~  105 (142)
                      ..+++..++..+++    .+++++||++|.|+.+++.
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            13445666777663    5699999999999976554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.41  E-value=2.4e-13  Score=96.56  Aligned_cols=107  Identities=7%  Similarity=-0.038  Sum_probs=72.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHHhcccC-CCCCCCEEEEEeC-CCCCCCCCCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK---NTLKWKKDVDLKCTLS-DGSPIPCMLLANK-CDLPHRQVDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK-~D~~~~~~~~~   75 (142)
                      |.+||++++.+|+.||.++|++|||+|++|...++   .+..+...+    ... ...++|++|.+|| .|+.. ..+..
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL----~e~~~l~~apLLVfANKkQDlp~-Ams~~  267 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMT----DPAFGSSGRPLLVLSCISQGDVK-RMPCF  267 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHH----CHHHHCTTCCEEEEEEESSTTSC-BCCHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHh----cchhhcCCCeEEEEeCCcccccC-CCCHH
Confidence            35799999999999999999999999999875433   222111111    111 1258999999997 57754 45555


Q ss_pred             HHHHHHHHc--C-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         76 DIECFYKEH--N-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        76 ~~~~~~~~~--~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ++.......  . .-.+..|||.+|+|+.+.++||...+.
T Consensus       268 EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          268 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            555443221  1 123778999999999999999998774

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.40  E-value=2e-12  Score=95.40  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=75.3

Q ss_pred             chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH----
Q psy10891          5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF----   80 (142)
Q Consensus         5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----   80 (142)
                      +++|..+++.+++.++++++|+|++++.     ..|...+.+..     .+.|+++|+||+|+.+.....+....+    
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~  125 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS  125 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHH
Confidence            6889999999999999999999999863     35666665443     478999999999997644444444444    


Q ss_pred             HHHcCCc--eEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ++..++.  +++.+||+++.|+++++..+...
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            5666752  68999999999999999988654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.39  E-value=6.3e-13  Score=100.70  Aligned_cols=99  Identities=15%  Similarity=0.132  Sum_probs=64.9

Q ss_pred             CCCcchhhhhhhH--------hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFTWMTR--------VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~--------~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~   71 (142)
                      ||||+..+...++        .++..+|++++|+|++++.+... ..|+..+         ...|+++|+||+|+.. ..
T Consensus       278 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l---------~~~piivV~NK~Dl~~~~~  347 (462)
T 3geh_A          278 DTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV---------KHRPLILVMNKIDLVEKQL  347 (462)
T ss_dssp             C--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH---------TTSCEEEEEECTTSSCGGG
T ss_pred             ECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc---------cCCcEEEEEECCCCCcchh
Confidence            8999877665433        36789999999999998776655 4566666         3579999999999976 22


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +.  ....+.   ...+++++||+++.|+++++..|...+...
T Consensus       348 ~~--~~~~~~---~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          348 IT--SLEYPE---NITQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             ST--TCCCCT---TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             hH--HHHHhc---cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            21  111111   225699999999999999999999987543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.39  E-value=8.6e-13  Score=97.45  Aligned_cols=103  Identities=8%  Similarity=-0.065  Sum_probs=75.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEe-CCCCCCCC-CC--HH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLAN-KCDLPHRQ-VD--IN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~-~~--~~   75 (142)
                      ||||+++|...+..+++.+|++|+|+| +.. .+.....|+..+..       .++|. |+++| |+|+ ... +.  .+
T Consensus        66 DtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~-------~~i~~~ivvvNNK~Dl-~~~~~~~~~~  135 (370)
T 2elf_A           66 DAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDL-------LGFKHGIIALTRSDST-HMHAIDELKA  135 (370)
T ss_dssp             ECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHH-------TTCCEEEEEECCGGGS-CHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHH-------cCCCeEEEEEEeccCC-CHHHHHHHHH
Confidence            899999999888888999999999999 543 33344555544431       35787 89999 9998 511 11  13


Q ss_pred             HHHHHHHHcC--CceEEE--eeccC---CCCHHHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHN--FIGWTE--TSTKE---GLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        76 ~~~~~~~~~~--~~~~~~--~Sa~~---~~~i~~l~~~l~~~~~~  113 (142)
                      ++..++...+  ..++++  +||++   +.|++++++.|...+..
T Consensus       136 ~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          136 KLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            4444444433  257999  99999   99999999999988754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.38  E-value=4.3e-13  Score=96.51  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=73.2

Q ss_pred             CCCcch-h--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C
Q psy10891          1 MTEGQE-R--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R   70 (142)
Q Consensus         1 Dt~G~e-~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~   70 (142)
                      ||||+. .        +......+++.+|++++|+|.++ .+..  ..|+.....      ..+.|+++|+||+|+.. +
T Consensus        62 DTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~------~~~~P~ilvlNK~D~~~~~  132 (301)
T 1ega_A           62 DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPD--DEMVLNKLR------EGKAPVILAVNKVDNVQEK  132 (301)
T ss_dssp             SSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHH--HHHHHHHHH------SSSSCEEEEEESTTTCCCH
T ss_pred             ECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHH------hcCCCEEEEEECcccCccH
Confidence            899987 3        33445677889999999999977 3322  234433221      14789999999999864 2


Q ss_pred             CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ....+.+..+...+++.+++++||+++.|++++++.+...+.
T Consensus       133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          133 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            222344555555566556999999999999999999987653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.38  E-value=9.8e-13  Score=100.17  Aligned_cols=96  Identities=17%  Similarity=0.100  Sum_probs=63.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH------HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN------TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~   73 (142)
                      ||||+++|...+..+++.+|++|+|+|++++.++..      ....+.... ..     .-.|+|+|+||+|+.+ ....
T Consensus       117 DTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~-----~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          117 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SL-----GIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH-HT-----TCCCEEEEEECGGGGTTCHHH
T ss_pred             ECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH-Hc-----CCCcEEEEEECcCcccchHHH
Confidence            899999999999999999999999999998644321      111111111 11     2346999999999865 1111


Q ss_pred             ----HHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891         74 ----INDIECFYKEHNF----IGWTETSTKEGLMVND  102 (142)
Q Consensus        74 ----~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  102 (142)
                          .+.+..++...++    .+++++||++|.|+.+
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence                2223333444443    5789999999999875

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.36  E-value=7.5e-14  Score=106.46  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCCHH--
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVDIN--   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~--   75 (142)
                      |||||+.|..++..++..+|++++|+|+++.......+.| ..+.       ..++|+|+++||+|+...   .+...  
T Consensus        57 DTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~-------~~~vPiIVviNKiDl~~~~~~~v~~~l~  128 (501)
T 1zo1_I           57 DTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI-QHAK-------AAQVPVVVAVNKIDKPEADPDRVKNELS  128 (501)
T ss_dssp             CCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHH-------HTTCCEEEEEECSSSSTTCCCCTTCCCC
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-HHHH-------hcCceEEEEEEeccccccCHHHHHHHHH
Confidence            8999999999999999999999999999884222222222 2221       147899999999998641   11000  


Q ss_pred             HHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHH
Q psy10891         76 DIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        76 ~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ....++..++ ..+++++||++|.|++++|+.|..
T Consensus       129 ~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          129 QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            0000112222 257999999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.35  E-value=9.3e-12  Score=93.75  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             CCCcchhhhhhh------------HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMT------------RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~------------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.++..+.            ..+++.+|++++|+|+++..+..+. .+...+.       ..++|+++|+||+|+.
T Consensus       234 Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-------~~~~~~ilv~NK~Dl~  305 (439)
T 1mky_A          234 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-------RRGRASVVVFNKWDLV  305 (439)
T ss_dssp             SCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-------HTTCEEEEEEECGGGS
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-------HcCCCEEEEEECccCC
Confidence            899986544321            3467899999999999987666542 2333332       1478999999999987


Q ss_pred             C-CCCCHHHHH-HHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         69 H-RQVDINDIE-CFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        69 ~-~~~~~~~~~-~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      + +....+... .+...+   +..+++++||++|.|++++|..+...+...
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          306 VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             TTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            5 333333332 222332   345799999999999999999999877664

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.35  E-value=3.1e-12  Score=96.27  Aligned_cols=97  Identities=19%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCCCC-C----CH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPHRQ-V----DI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~-~----~~   74 (142)
                      ||||+++|...+..++..+|++|+|+|+++...... ..|+..+..       .++ |+|+|+||+|+.... .    ..
T Consensus       110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-------~~~~~iIvviNK~Dl~~~~~~~~~~i~  181 (434)
T 1zun_B          110 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-------LGIKHIVVAINKMDLNGFDERVFESIK  181 (434)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-------TTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence            899999999999999999999999999998643332 334433321       244 599999999986411 0    12


Q ss_pred             HHHHHHHHHcC--C--ceEEEeeccCCCCHHHHHH
Q psy10891         75 NDIECFYKEHN--F--IGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        75 ~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~l~~  105 (142)
                      +++..+++.++  .  .+++++||++|.|+.+++.
T Consensus       182 ~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          182 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            34455566666  2  5699999999999988543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.34  E-value=2.1e-13  Score=103.52  Aligned_cols=100  Identities=15%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC---
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD---   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---   73 (142)
                      |||||++|...+..++..+|++|+|+|+++..   +|.....|...+...    ...++| +|+|+||+|+......   
T Consensus       127 DtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----~~~~vp~iivviNK~Dl~~~~~~~~~  202 (467)
T 1r5b_A          127 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----RTQGINHLVVVINKMDEPSVQWSEER  202 (467)
T ss_dssp             CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----HHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred             ECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----HHcCCCEEEEEEECccCCCccccHHH
Confidence            89999999999999999999999999999862   332211222222110    013677 9999999998541111   


Q ss_pred             ----HHHHHHHHHHc-CC-----ceEEEeeccCCCCHHHHH
Q psy10891         74 ----INDIECFYKEH-NF-----IGWTETSTKEGLMVNDSM  104 (142)
Q Consensus        74 ----~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~l~  104 (142)
                          ..++..++... ++     .+++++||++|.|+.+++
T Consensus       203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                22355566655 43     469999999999998766

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.32  E-value=4.8e-12  Score=93.42  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=74.7

Q ss_pred             cchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---
Q psy10891          4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---   80 (142)
Q Consensus         4 G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---   80 (142)
                      .|++|..+++.++.+++++++|+|++++.+     .|...+.+..     .+.|+++|+||+|+.+.....+....|   
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~  126 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR  126 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence            488999999999999999999999999764     3544444333     478999999999997644444444444   


Q ss_pred             -HHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 -YKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 -~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                       ++..+.  .+++.+||+++.|+++++..+....
T Consensus       127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence             555665  2589999999999999999887654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.32  E-value=1.7e-12  Score=106.50  Aligned_cols=103  Identities=13%  Similarity=0.137  Sum_probs=75.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCC-C---CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHR-Q---VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~-~---~~~~   75 (142)
                      |||||++|...+..++..+|++|+|+|+++....+. ..|+..+..       .++| +|+|+||+|+... .   ...+
T Consensus       365 DTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~-------lgIP~IIVVINKiDLv~d~e~le~i~e  436 (1289)
T 3avx_A          365 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ-------VGVPYIIVFLNKCDMVDDEELLELVEM  436 (1289)
T ss_dssp             ECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH-------HTCSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH-------cCCCeEEEEEeecccccchhhHHHHHH
Confidence            899999999999999999999999999998643333 334444321       2688 7999999999641 1   1123


Q ss_pred             HHHHHHHHcCC----ceEEEeeccCC--------CCHHHHHHHHHHHH
Q psy10891         76 DIECFYKEHNF----IGWTETSTKEG--------LMVNDSMKFLLDVL  111 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~~--------~~i~~l~~~l~~~~  111 (142)
                      ++..++..+++    .+++++||++|        .|+.++++.|...+
T Consensus       437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            45566777663    57999999999        35777777776544

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.31  E-value=1.5e-11  Score=90.61  Aligned_cols=110  Identities=15%  Similarity=0.031  Sum_probs=75.8

Q ss_pred             CCCcc---------hhhhhhhHhhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQ---------ERFTWMTRVYYKDAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~---------e~~~~~~~~~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||+|.         +.|..+++ .+..+|++++|+|++++.  +......|...+...    ...+.|+|+|+||+|+..
T Consensus       232 DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~  306 (364)
T 2qtf_A          232 DTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKIN  306 (364)
T ss_dssp             ECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCC
T ss_pred             eCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCC
Confidence            78996         45655555 578999999999999876  555555555444321    225789999999999865


Q ss_pred             CCCC--HHHHHHHHHHc-C-CceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 RQVD--INDIECFYKEH-N-FIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 ~~~~--~~~~~~~~~~~-~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ....  ...+..++..+ . ..+++++||+++.|+++++..|...+....
T Consensus       307 ~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          307 GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             SCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence            2210  11222233444 2 135889999999999999999998877653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.31  E-value=8e-13  Score=94.38  Aligned_cols=105  Identities=17%  Similarity=0.062  Sum_probs=72.2

Q ss_pred             CCCcch-------------hhhhhhHhhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891          1 MTEGQE-------------RFTWMTRVYYKDAHGCI-IMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus         1 Dt~G~e-------------~~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      ||||+.             .+..++..|++.++.++ +|+|+++..+......|+..+.       ..+.|+++|+||+|
T Consensus       131 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~i~V~NK~D  203 (299)
T 2aka_B          131 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD-------PQGQRTIGVITKLD  203 (299)
T ss_dssp             ECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC-------TTCSSEEEEEECGG
T ss_pred             eCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC-------CCCCeEEEEEEccc
Confidence            899963             57778888999998777 7999987655444334555552       24789999999999


Q ss_pred             CCC-CCCCHHHHHHHHHH--cCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         67 LPH-RQVDINDIECFYKE--HNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        67 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +.. .....+.+......  .++.+++++||+++.|+++++..+.....
T Consensus       204 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          204 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             GSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             cCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            875 22222222210001  13346889999999999999999987443

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.31  E-value=3e-12  Score=96.91  Aligned_cols=95  Identities=12%  Similarity=0.053  Sum_probs=68.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hH----HHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SF----KNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~   71 (142)
                      |||||++|...+..++..+|++|+|+|+++..   +|    ...+.| ..+..       .++| +|+|+||+|+.. ..
T Consensus        91 DtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~-------~~v~~iivviNK~Dl~~~~~  162 (458)
T 1f60_A           91 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-------LGVRQLIVAVNKMDSVKWDE  162 (458)
T ss_dssp             ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-------TTCCEEEEEEECGGGGTTCH
T ss_pred             ECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH-------cCCCeEEEEEEccccccCCH
Confidence            89999999999999999999999999999763   22    222222 22211       3566 899999999863 11


Q ss_pred             ----CCHHHHHHHHHHcCC----ceEEEeeccCCCCHHHH
Q psy10891         72 ----VDINDIECFYKEHNF----IGWTETSTKEGLMVNDS  103 (142)
Q Consensus        72 ----~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l  103 (142)
                          ...+++..++..+++    .+++++||++|.|+.++
T Consensus       163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence                122345556666664    57999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.30  E-value=3.3e-12  Score=85.48  Aligned_cols=69  Identities=22%  Similarity=0.259  Sum_probs=56.3

Q ss_pred             CCCcchhhhhhhHhhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKD----AHGCIIMFDLT-NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~----ad~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||++.|...+..++.+    +|++++|||++ ++.++.....|+..+..........++|+++|+||+|+..
T Consensus        97 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A           97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             EETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            899999999988888876    89999999999 8899999888887775322100225799999999999976

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.29  E-value=1.7e-11  Score=96.54  Aligned_cols=60  Identities=13%  Similarity=0.085  Sum_probs=48.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+++|...+..+++.+|++++|+|+++....... .|+..+..       .++|+|+|+||+|+.
T Consensus        80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-------~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-------LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-------TTCCEEEEEECGGGC
T ss_pred             eCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-------ccCCEEEEecCCchh
Confidence            8999999999999999999999999999876554443 34344321       478999999999985

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.28  E-value=4.4e-12  Score=95.96  Aligned_cols=100  Identities=17%  Similarity=0.115  Sum_probs=70.0

Q ss_pred             CCCc--------chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEG--------QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G--------~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||        ++++..++..+++++|++|||+|..+..+..+  .|+..+.      ...++|+++|+||+|+.... 
T Consensus        77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l------~~~~~pvilV~NK~D~~~~~-  147 (456)
T 4dcu_A           77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKIL------YRTKKPVVLAVNKLDNTEMR-  147 (456)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH--HHHHHHH------TTCCSCEEEEEECC-------
T ss_pred             ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH--HHHHHHH------HHcCCCEEEEEECccchhhh-
Confidence            8999        99999999999999999999999887544333  3443333      12579999999999985411 


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                        .....+ ...++..++.+||++|.|+.++++.+...+.
T Consensus       148 --~~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          148 --ANIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             -----CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             --hhHHHH-HHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence              111111 1234445789999999999999999987664

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.25  E-value=4.9e-11  Score=94.33  Aligned_cols=61  Identities=23%  Similarity=0.337  Sum_probs=52.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+..+++.+|++|+|+|+++..++.....|.....        .++|+++|+||+|+..
T Consensus        83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEECTTSTT
T ss_pred             ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence            899999999999999999999999999999877777666654332        4799999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.21  E-value=1.3e-10  Score=92.18  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=50.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+..+++.+|++|+|+|+++..+......|.....        .++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--------~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--------YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCEEEEEeCCCccc
Confidence            899999999999999999999999999998766665555533321        4799999999999854

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.21  E-value=8e-12  Score=97.57  Aligned_cols=96  Identities=19%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCC-CCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SF---KNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPH-RQV   72 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~-~~~   72 (142)
                      ||||+++|...+..+++.+|++|+|+|++++.   ++   ......+..+.       ..++ |+|+|+||+|+.. ...
T Consensus       251 DTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-------~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          251 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-------SLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             ECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-------TTTCCEEEEEEECTTTTTTCHH
T ss_pred             ECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-------HcCCCeEEEEEecccccchhHH
Confidence            89999999999999999999999999998742   11   01111111111       1244 4999999999865 111


Q ss_pred             C----HHHHHHHHHHcCC----ceEEEeeccCCCCHHHH
Q psy10891         73 D----INDIECFYKEHNF----IGWTETSTKEGLMVNDS  103 (142)
Q Consensus        73 ~----~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l  103 (142)
                      .    ...+..++...++    .++++|||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1    2334444555553    47999999999999876

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.18  E-value=1.9e-10  Score=88.49  Aligned_cols=61  Identities=20%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+++|...+..+++.+|++|+|+|+++...... ..++...       ...++|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~-------~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT-------RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH-------TTTTCCEEEEEECTTSCC
T ss_pred             ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH-------HHcCCCEEEEEcCcCCcc
Confidence            899999999999999999999999999988643322 2222222       224789999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.18  E-value=2.2e-11  Score=85.50  Aligned_cols=110  Identities=13%  Similarity=0.059  Sum_probs=69.0

Q ss_pred             CCCcchhhhh-----------hhHhhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHHhcccCCCCCCCEEEEEe-CCCC
Q psy10891          1 MTEGQERFTW-----------MTRVYYKDAHGCIIMFDLTNQNSF-KNTLKWKKDVDLKCTLSDGSPIPCMLLAN-KCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~-----------~~~~~~~~ad~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~   67 (142)
                      ||||+..+..           ....+++++|++++|+|+++.... ..+..|+..+..     .....|+++|+| |+|+
T Consensus        77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-----~~~~~~~i~vv~nK~Dl  151 (260)
T 2xtp_A           77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG-----EDAMGHTIVLFTHKEDL  151 (260)
T ss_dssp             ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC-----GGGGGGEEEEEECGGGG
T ss_pred             ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC-----chhhccEEEEEEccccc
Confidence            8999876532           233477899999999999863222 122233333320     011456666666 9998


Q ss_pred             CCCCCCH-------HHHHHHHHHcCCc--eE--EEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         68 PHRQVDI-------NDIECFYKEHNFI--GW--TETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        68 ~~~~~~~-------~~~~~~~~~~~~~--~~--~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ....+..       ..+..++...+..  ++  +++||+++.|++++|..|...+....
T Consensus       152 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          152 NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            6422111       2244466665532  12  68999999999999999999887643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.5e-12  Score=95.93  Aligned_cols=104  Identities=17%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             CCCcc-------hhhhhhhH-------hhhccCC-------------EEEEEEeCCChhhHHHHH-HHHHHHHHhcccCC
Q psy10891          1 MTEGQ-------ERFTWMTR-------VYYKDAH-------------GCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSD   52 (142)
Q Consensus         1 Dt~G~-------e~~~~~~~-------~~~~~ad-------------~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~   52 (142)
                      ||||+       +.|..++.       .|+++++             +++++++.. ..++..+. .|+..+.       
T Consensus       101 DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~-------  172 (361)
T 2qag_A          101 DTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH-------  172 (361)
T ss_dssp             C--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC-------
T ss_pred             EeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc-------
Confidence            89999       88888886       7776554             455555431 23344433 4544441       


Q ss_pred             CCCCCEEEEEeCCCCCC-CCCCH--HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         53 GSPIPCMLLANKCDLPH-RQVDI--NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        53 ~~~~p~ilv~nK~D~~~-~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                       .++|+|+|+||+|+.. +.+..  +.+..++..++ .+++++||+++.+ ++.|..+...+.+.-
T Consensus       173 -~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          173 -NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             -S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTC
T ss_pred             -cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence             5799999999999875 22222  35555666666 4699999999999 888989888887654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.15  E-value=2.7e-10  Score=90.14  Aligned_cols=61  Identities=18%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|...+..+++.+|++|+|+|+++..+......|.....        .++|+++|+||+|+..
T Consensus        81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--------~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--------YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCCEEEEEECTTSTT
T ss_pred             ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence            899999999999999999999999999998877777666644321        4789999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.13  E-value=2.4e-12  Score=100.16  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=55.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~   69 (142)
                      ||||+++|...+..+++.+|++|+|+|++++          .+...   + ..+. .      .++| +|+|+||+|+..
T Consensus       261 DTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~---l-~~~~-~------lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH---A-YLLR-A------LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             EEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH---H-HHHH-H------SSCCCEEEEEECGGGGT
T ss_pred             ECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH---H-HHHH-H------cCCCeEEEEEecccccc
Confidence            8999999999999999999999999999853          22222   1 1121 1      2565 999999999854


Q ss_pred             -CC-C---CHHHHHHHH-HHcCC----ceEEEeeccCCCCHH
Q psy10891         70 -RQ-V---DINDIECFY-KEHNF----IGWTETSTKEGLMVN  101 (142)
Q Consensus        70 -~~-~---~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~  101 (142)
                       .. .   ....+..++ ...++    .+++++||++|.|+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence             11 0   112233333 34454    369999999999997

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.13  E-value=9.6e-11  Score=92.74  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=74.7

Q ss_pred             CCCcchhh---hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHH-
Q psy10891          1 MTEGQERF---TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDIN-   75 (142)
Q Consensus         1 Dt~G~e~~---~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~-   75 (142)
                      ||||....   ...+..|+.++|++++|+|++++.+......|...+.       ..+.|+++|+||+|+.. ..+..+ 
T Consensus       180 DTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~-------~~~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          180 DSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK-------GRGLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             ECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT-------TSCCCEEEEEECGGGGGGGCSSTTC
T ss_pred             ECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH-------hhCCCEEEEEECcccccccccChhh
Confidence            89997663   3566788999999999999998888777666655442       13678999999999864 211111 


Q ss_pred             ---------HHHHH----HHHc-C-------CceEEEeecc--------------CCCCHHHHHHHHHHHHHH
Q psy10891         76 ---------DIECF----YKEH-N-------FIGWTETSTK--------------EGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        76 ---------~~~~~----~~~~-~-------~~~~~~~Sa~--------------~~~~i~~l~~~l~~~~~~  113 (142)
                               .+...    ...+ +       ..++++|||+              ++.|+.+++..|...+..
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                     11111    1111 1       1358999999              999999999999887754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.12  E-value=2e-10  Score=77.75  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             CCCcch----------hhhhhhHhhh---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891          1 MTEGQE----------RFTWMTRVYY---KDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKC   65 (142)
Q Consensus         1 Dt~G~e----------~~~~~~~~~~---~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~   65 (142)
                      ||||+.          .|......++   ..++++++|+|++++.++..  +..|+..          .+.|+++|+||+
T Consensus        78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~  147 (210)
T 1pui_A           78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKA  147 (210)
T ss_dssp             ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECG
T ss_pred             ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecc
Confidence            789973          4555555555   47899999999988765532  2333322          368999999999


Q ss_pred             CCCCC---CCCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         66 DLPHR---QVDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        66 D~~~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      |+...   ......+..++...+ ...++++||+++.++++++..|.+.+.
T Consensus       148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            98651   111234444454444 345789999999999999999887753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.11  E-value=5.7e-10  Score=77.36  Aligned_cols=109  Identities=10%  Similarity=0.048  Sum_probs=70.5

Q ss_pred             CCCc-----------chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEG-----------QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G-----------~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||           ++.+...+..++.++|++|+|+|+++.....  ..|+..+.....  .....|+++|+||+|+..
T Consensus        84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~--~~~~~~~iiv~nK~D~~~  159 (239)
T 3lxx_A           84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFG--ERARSFMILIFTRKDDLG  159 (239)
T ss_dssp             ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHH--HHHGGGEEEEEECGGGC-
T ss_pred             ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhh--hhccceEEEEEeCCccCC
Confidence            8999           5566677777788999999999987543321  223333321110  002469999999999865


Q ss_pred             -CCCC------HHHHHHHHHHcCCceEEEeeccCC-----CCHHHHHHHHHHHHHHH
Q psy10891         70 -RQVD------INDIECFYKEHNFIGWTETSTKEG-----LMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 -~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~~  114 (142)
                       ..+.      .+.+..+++.++.. ++.++...+     .++.++|..+...+.++
T Consensus       160 ~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          160 DTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             -----------CHHHHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHhchHHHHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence             2222      24577778888843 777766643     68899999888777554

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.04  E-value=7.1e-11  Score=83.73  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=45.6

Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-C--CCHHHHHHHHHHcCCceEEEeecc
Q psy10891         19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-Q--VDINDIECFYKEHNFIGWTETSTK   95 (142)
Q Consensus        19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~--~~~~~~~~~~~~~~~~~~~~~Sa~   95 (142)
                      +|+++++++.+..........++..+.        .++|+|+|+||+|+... .  .....+...+...+ .+++.+|+.
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~--------~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~  186 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLH--------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK-IKIYEFPET  186 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHT--------TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTT-CCCCCC---
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHh--------ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcC-CeEEcCCCC
Confidence            789999997665221122234555552        27999999999998641 1  11123344455566 458889999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy10891         96 EGLMVNDSMKFLLDVL  111 (142)
Q Consensus        96 ~~~~i~~l~~~l~~~~  111 (142)
                      ++.|+.+++.+|...+
T Consensus       187 ~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          187 DDEEENKLVKKIKDRL  202 (274)
T ss_dssp             --------CHHHHHTC
T ss_pred             CChhHHHHHHHHhcCC
Confidence            9999999998887654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.03  E-value=1.4e-10  Score=83.31  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             CCCcchh-------------hhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891          1 MTEGQER-------------FTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus         1 Dt~G~e~-------------~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      ||||..+             +..++..++.++|++++|+|..+.. +......++..+       ...+.|+++|+||+|
T Consensus       137 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-------~~~~~~~i~v~NK~D  209 (315)
T 1jwy_B          137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-------DPEGKRTIGVITKLD  209 (315)
T ss_dssp             ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-------CSSCSSEEEEEECTT
T ss_pred             ECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-------CCCCCcEEEEEcCcc
Confidence            8999753             6677888999999999999974322 211212333444       224789999999999


Q ss_pred             CCC-CCCCHHHHHHHHHHcCCceEEEe---eccC---CCCHHHHHHHHHHHHHH
Q psy10891         67 LPH-RQVDINDIECFYKEHNFIGWTET---STKE---GLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---Sa~~---~~~i~~l~~~l~~~~~~  113 (142)
                      +.. .....+.+......++ .+++.+   |+.+   +.|+.+++..+...+..
T Consensus       210 l~~~~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          210 LMDKGTDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             SSCSSCCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cCCcchHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            875 2212222221001111 235544   5555   78999999988887754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.03  E-value=4.9e-11  Score=87.63  Aligned_cols=104  Identities=15%  Similarity=0.089  Sum_probs=69.9

Q ss_pred             CCCcchhh-------------hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERF-------------TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||+.++             ..+...|+.++|++|+|+|..+.....  ..|+..+.    .....+.|+|+|+||+|+
T Consensus       142 DtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~----~~~~~~~~~i~V~nK~Dl  215 (360)
T 3t34_A          142 DLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISR----EVDPSGDRTFGVLTKIDL  215 (360)
T ss_dssp             ECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHH----HSCTTCTTEEEEEECGGG
T ss_pred             ECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHH----HhcccCCCEEEEEeCCcc
Confidence            89998887             667889999999999999875432221  23443332    113357899999999998


Q ss_pred             CC-CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         68 PH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        68 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .. .....+.+..+...++ .+|+.+|+.++.++++.+..+....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          216 MDKGTDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             CCTTCCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             CCCcccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHHHHH
Confidence            76 3334444433333444 5699999999888877665544433

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.02  E-value=2.7e-09  Score=82.46  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|..-....++-+|++|+|+|+.....-.....|.....        .++|+|+++||+|...
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--------~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--------RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCCEEEEEECTTSCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--------hCCceEEEEecccchh
Confidence            999999999999999999999999999998766565556655543        5899999999999754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.97  E-value=2e-09  Score=80.51  Aligned_cols=110  Identities=12%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             CCCcchh----hhhhhHhh---hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQER----FTWMTRVY---YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~----~~~~~~~~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~   73 (142)
                      ||||...    +..+...+   ...++.+++|+|++ ..++..+..|..++..+..  .....|.|+|+||+|+... ..
T Consensus       211 DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~--aL~~~P~ILVlNKlDl~~~-~~  286 (416)
T 1udx_A          211 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEE-EA  286 (416)
T ss_dssp             ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCH-HH
T ss_pred             eccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH--HhhcCCEEEEEECCChhhH-HH
Confidence            6788632    22233333   35799999999997 4456666666666543210  0126899999999998642 22


Q ss_pred             HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ...+...+...+ .+++.+||+++.|+++++..|...+.+..
T Consensus       287 ~~~l~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          287 VKALADALAREG-LAVLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcC-CeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence            233334444445 45999999999999999999999987643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.95  E-value=2.3e-09  Score=76.43  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             CCcch-hhhhhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891          2 TEGQE-RFTWMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE   78 (142)
Q Consensus         2 t~G~e-~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~   78 (142)
                      .||+. +....+...+..+|+++.|+|+.+|.+...  +..|+            .+.|+++|+||+|+.+    .+...
T Consensus         6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~----~~~~~   69 (282)
T 1puj_A            6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKAD----AAVTQ   69 (282)
T ss_dssp             ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSC----HHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCC----HHHHH
Confidence            47754 455566778899999999999999977653  32321            4789999999999964    23333


Q ss_pred             HH---HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         79 CF---YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        79 ~~---~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .|   .+..+ .+++.+||+++.|+.+++..+...+..
T Consensus        70 ~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           70 QWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            33   33445 468999999999999999988877653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.95  E-value=1.6e-09  Score=75.80  Aligned_cols=105  Identities=13%  Similarity=-0.023  Sum_probs=64.5

Q ss_pred             CCCcchhhhhhhH------hhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQERFTWMTR------VYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||+..+.....      .++.+ +++++++|.....+.....   .+......      ..+.|+++|+||+|+....
T Consensus       115 DtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          115 DTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL------RLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             ECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH------HHTSCEEEEECCGGGCCHH
T ss_pred             eCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc------ccCCCeEEEEecccccccc
Confidence            8999988754432      24566 8999999875432222211   11111111      1368999999999986411


Q ss_pred             CCHHHHHHH----------------------------HHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECF----------------------------YKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        72 ~~~~~~~~~----------------------------~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       ....+..+                            +..++. .+++++||+++.|+++++.+|.+.+..
T Consensus       188 -~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 -EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             -HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence             01111111                            233332 368999999999999999999887754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.92  E-value=8.6e-10  Score=75.27  Aligned_cols=86  Identities=17%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcC-CceEEEeec
Q psy10891         17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHN-FIGWTETST   94 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~~Sa   94 (142)
                      ..++.+++|+|++.....  ...+....          +.|+++|+||+|+.. .....+.+..++...+ ..+++++||
T Consensus       128 ~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  195 (221)
T 2wsm_A          128 LGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDL  195 (221)
T ss_dssp             CSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBT
T ss_pred             cccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeec
Confidence            367889999998765321  11121211          578999999999854 2245566666665543 357999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHH
Q psy10891         95 KEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        95 ~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++|.|++++|++|...+...
T Consensus       196 ~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          196 KTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             TTTBTHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999887554

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.91  E-value=3.1e-10  Score=83.32  Aligned_cols=98  Identities=10%  Similarity=-0.049  Sum_probs=62.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||...   .....+..+|++++|+|......+..+.   ..         ....|+++|+||+|+............+
T Consensus       178 DTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---~~---------~~~~p~ivVlNK~Dl~~~~~~~~~~~~l  242 (355)
T 3p32_A          178 ETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---KG---------VLELADIVVVNKADGEHHKEARLAAREL  242 (355)
T ss_dssp             EECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---TT---------SGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred             eCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---Hh---------HhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence            7888322   2334458999999999987654332211   11         1246999999999985411111111222


Q ss_pred             HHH---c-----C-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKE---H-----N-FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~---~-----~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ...   .     + ..+++.+||++|.|+++++++|...+..
T Consensus       243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            221   2     1 2569999999999999999999988765

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.84  E-value=5.2e-10  Score=82.02  Aligned_cols=102  Identities=18%  Similarity=0.071  Sum_probs=63.6

Q ss_pred             CCCcc-------------hhhhhhhHhhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891          1 MTEGQ-------------ERFTWMTRVYYKDAHGCI-IMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus         1 Dt~G~-------------e~~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      ||||.             +.+..++..|+.+++.++ +|.+.+...+-.....++..+       ...+.|+++|+||+|
T Consensus       136 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~-------~~~~~~~i~V~NK~D  208 (353)
T 2x2e_A          136 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV-------DPQGQRTIGVITKLD  208 (353)
T ss_dssp             ECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH-------CTTCTTEEEEEECGG
T ss_pred             ECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh-------CcCCCceEEEecccc
Confidence            89995             367778888887666555 556665432222222344444       235789999999999


Q ss_pred             CCCCCC-CHHHHHHH--HHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         67 LPHRQV-DINDIECF--YKEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        67 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +.+... ....+...  ....++.+++.+||+++.|+++++..+..
T Consensus       209 l~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          209 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            875221 12221100  00123345778999999999999999876

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.84  E-value=2.9e-09  Score=83.59  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=49.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+.+|..-....++-+|++|+|+|+.....-+....|.....        .++|.|+++||+|...
T Consensus        73 DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--------~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           73 DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--------MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             ECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--------HTCSCEECCEECCSSS
T ss_pred             ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCeEEEEecccccc
Confidence            899999999999999999999999999998754444445544443        4789999999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.79  E-value=7e-09  Score=75.73  Aligned_cols=98  Identities=12%  Similarity=-0.001  Sum_probs=60.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCC--HHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVD--INDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~--~~~~   77 (142)
                      ||||...+...   ....+|++++|+|.+....+..+..   ..         .+.|.++|+||+|+... ...  ...+
T Consensus       155 DTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~~~~~~~l  219 (341)
T 2p67_A          155 ETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNVAIARHMY  219 (341)
T ss_dssp             EEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHHHHHHHHH
Confidence            78996544332   4689999999999975533211111   11         14688999999998541 110  0122


Q ss_pred             HHHHHHcC------CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         78 ECFYKEHN------FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        78 ~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .......+      ..+++.+||++|.|++++++.|...+..
T Consensus       220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            22222222      2468899999999999999999987653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.77  E-value=4.6e-09  Score=84.78  Aligned_cols=60  Identities=13%  Similarity=0.216  Sum_probs=52.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.+|...+..+++.+|++|+|+|+++..++.....|.....        .++|+|+|+||+|+.
T Consensus       104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHH
T ss_pred             ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcc
Confidence            899999999999999999999999999999888887766755442        478999999999975

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.74  E-value=3.1e-09  Score=76.39  Aligned_cols=60  Identities=17%  Similarity=0.072  Sum_probs=39.4

Q ss_pred             CCCCEEEEEeCCCCCC-CC--CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         54 SPIPCMLLANKCDLPH-RQ--VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ..+|+++|+||+|+.. +.  ...+.+..++..++ .+++++||+++ +++++|..+...+.+..
T Consensus       154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTC
T ss_pred             hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            4689999999999875 22  22356677888888 46999999999 99999999999887543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.71  E-value=9.8e-08  Score=75.81  Aligned_cols=60  Identities=20%  Similarity=0.280  Sum_probs=50.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      |||||-+|..-....++=+|++|+|+|+......+....|.....        .++|.|+++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--------~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--------YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------HTCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--------cCCCeEEEEcccccc
Confidence            999999999999999999999999999998765555555655553        479999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.68  E-value=8.4e-09  Score=82.11  Aligned_cols=96  Identities=20%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             hhhhhhHhhh-ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---
Q psy10891          7 RFTWMTRVYY-KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYK---   82 (142)
Q Consensus         7 ~~~~~~~~~~-~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~---   82 (142)
                      .+..++..|+ ..+|++++|+|++...+..+...++..+       ...+.|+|+|+||+|+.........+.. ..   
T Consensus       175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L-------~~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~  246 (772)
T 3zvr_A          175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-------DPQGQRTIGVITKLDLMDEGTDARDVLE-NKLLP  246 (772)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH-------CTTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC
T ss_pred             HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH-------HhcCCCEEEEEeCcccCCcchhhHHHHH-HHhhh
Confidence            4555666666 5789999999998754333322344555       2247899999999999762221222111 01   


Q ss_pred             -HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         83 -EHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        83 -~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                       ..++.+++.+||+++.|+++|++.+...
T Consensus       247 l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          247 LRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             CSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             hhccCCceEEecccccccchhHHHHHHHH
Confidence             1244567789999999999999998864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.63  E-value=6.5e-08  Score=70.84  Aligned_cols=97  Identities=7%  Similarity=-0.033  Sum_probs=56.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|.-.   ........+|++++|+|+..+.....+.   ..+         -..|.++|+||+|+............+
T Consensus       173 DT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i---------l~~~~ivVlNK~Dl~~~~~~~~~~~~l  237 (349)
T 2www_A          173 ETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIK---RGI---------IEMADLVAVTKSDGDLIVPARRIQAEY  237 (349)
T ss_dssp             ECCCC-----CHHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHHHHHHHHH
T ss_pred             ECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhH---HHH---------HhcCCEEEEeeecCCCchhHHHHHHHH
Confidence            6888421   1234567899999999998653322111   112         246889999999985310000112222


Q ss_pred             HHHc---------CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         81 YKEH---------NFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        81 ~~~~---------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      ....         ...+++.+||+++.|+++++++|...+.
T Consensus       238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            2111         1246889999999999999999988764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.59  E-value=6.3e-08  Score=68.05  Aligned_cols=66  Identities=6%  Similarity=-0.034  Sum_probs=45.4

Q ss_pred             CCCcchhhhhhhHhhhc---------cCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYK---------DAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~---------~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+++|..+.+.+++         ++|++++|++++... +.. ...|+..+.....  .....|+++|+||+|+..
T Consensus        90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~--~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A           90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG--KEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC--GGGGGGEEEEEECTTCCC
T ss_pred             ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc--hhhhcCEEEEEeCcccCC
Confidence            89999988776655554         889999999987643 322 2356666653320  111249999999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.58  E-value=1.8e-08  Score=74.96  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             CCCEEEEEeCCCCCCCCCCHHHHHHHHHHc---CCceEEEeeccCCCCHHHHHH
Q psy10891         55 PIPCMLLANKCDLPHRQVDINDIECFYKEH---NFIGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~  105 (142)
                      .+|+|+|+||+|+..    .+....+.+.+   + .+++.+||+.+.++.+++.
T Consensus       214 ~kP~i~v~NK~D~~~----~~~l~~l~~~~~~~~-~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAAS----DEQIKRLVREEEKRG-YIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSC----HHHHHHHHHHHHHTT-CEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccc----hHHHHHHHHHHhhcC-CcEEEEeccchhhHHHHHh
Confidence            489999999999752    23334443332   4 5699999999988876543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.57  E-value=9e-09  Score=77.06  Aligned_cols=88  Identities=18%  Similarity=0.182  Sum_probs=42.8

Q ss_pred             hhhccCCE--EEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCH--HHHHHHHHHcCCc
Q psy10891         14 VYYKDAHG--CIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDI--NDIECFYKEHNFI   87 (142)
Q Consensus        14 ~~~~~ad~--ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~--~~~~~~~~~~~~~   87 (142)
                      .++.++++  ++++.+.+. .++.... .|+..+.        .++|+|+|+||+|+.. +.+..  ..+..++...+ .
T Consensus       132 al~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~-i  201 (418)
T 2qag_C          132 RQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK-I  201 (418)
T ss_dssp             CCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT--------TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT-C
T ss_pred             HhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh--------ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC-C
Confidence            34555554  455444431 2333333 5777663        4789999999999875 32222  55666777777 5


Q ss_pred             eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         88 GWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        88 ~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +++++|++++.++.++|..+...+
T Consensus       202 ~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          202 KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             CCCCCC-----------------C
T ss_pred             eEEeCCCCCCcCHHHHHHHHHhhC
Confidence            599999999999998887776543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.50  E-value=3.1e-08  Score=71.33  Aligned_cols=92  Identities=17%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             hhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHHHHHHHH
Q psy10891          7 RFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DINDIECFYK   82 (142)
Q Consensus         7 ~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~   82 (142)
                      |-+.+.+..++++|.+++|+|+.+|. +...++.++....       ..++|.+||.||+|+.+...   .......+..
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~-------~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~  147 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-------ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR  147 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-------TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEECCccCchhhhHHHHHHHHHHHH
Confidence            33445566789999999999999775 4445566654442       25789999999999965211   0122333344


Q ss_pred             HcCCceEEEeeccCCCCHHHHHHH
Q psy10891         83 EHNFIGWTETSTKEGLMVNDSMKF  106 (142)
Q Consensus        83 ~~~~~~~~~~Sa~~~~~i~~l~~~  106 (142)
                      ..| .+++.+||.++.|+++|+..
T Consensus       148 ~~g-~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          148 NIG-YDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHT-CCEEECCHHHHTTCTTTGGG
T ss_pred             hCC-CeEEEEecCCCCCHHHHHhh
Confidence            456 46889999988887766543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.47  E-value=9e-08  Score=74.00  Aligned_cols=62  Identities=18%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             CCCcchh-----------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQER-----------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~-----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+..           |..++..++.++|++++|+|+++.........|+..+.       ..+.|+++|+||+|+..
T Consensus       160 DTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          160 DTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-------GHEDKIRVVLNKADMVE  232 (550)
T ss_dssp             ECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-------TCGGGEEEEEECGGGSC
T ss_pred             ECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-------hcCCCEEEEEECCCccC
Confidence            8999875           66778888999999999999987544455556766653       23589999999999865

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.43  E-value=7.9e-08  Score=67.77  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=59.2

Q ss_pred             Ccchhhh-hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891          3 EGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY   81 (142)
Q Consensus         3 ~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~   81 (142)
                      |||.... ..+...+.++|+++.|+|+.+|.+.....  +. +       -  ++|.++|+||+|+.+... .+....+.
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-------l--~k~~iivlNK~DL~~~~~-~~~~~~~~   71 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-------S--RKETIILLNKVDIADEKT-TKKWVEFF   71 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-------T--TSEEEEEEECGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-------c--CCCcEEEEECccCCCHHH-HHHHHHHH
Confidence            5654322 34566788999999999999987654310  01 1       1  689999999999965111 11222334


Q ss_pred             HHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         82 KEHNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        82 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      +..+ .++ .+||+++.|+++++..+..
T Consensus        72 ~~~g-~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQG-KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence            4556 457 9999999999999877643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.41  E-value=3.7e-07  Score=64.31  Aligned_cols=66  Identities=11%  Similarity=0.016  Sum_probs=42.9

Q ss_pred             CCCcchhhhhhhH-------hh--hccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTR-------VY--YKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~-------~~--~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||++++..+..       .+  ..++|++++|+|++.. ++.. ...|+..+.....  ....+|+++|+||+|+..
T Consensus        93 DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~--~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A           93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG--KGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECCSCCC
T ss_pred             ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC--cccccCEEEEEECcccCC
Confidence            8999987764322       12  3479999999998753 2332 2367766653320  001269999999999865

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.34  E-value=4.9e-07  Score=61.63  Aligned_cols=59  Identities=20%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             CCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLPH-RQVDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        55 ~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..|+++|+||+|+.. +....+.+..++..++ ..+++++||++|.|++++|..+...+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            356799999999864 2345666666766643 3579999999999999999999887754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.23  E-value=1.6e-06  Score=63.15  Aligned_cols=97  Identities=10%  Similarity=-0.032  Sum_probs=56.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||.-.-   .......+|++++|+|.........+..+   +         ...+.++++||+|+.. ..........
T Consensus       154 DT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i---------~~~~~ivvlNK~Dl~~~~~~s~~~~~~  218 (337)
T 2qm8_A          154 ETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---I---------FELADMIAVNKADDGDGERRASAAASE  218 (337)
T ss_dssp             EECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---H---------HHHCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred             ECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---H---------hccccEEEEEchhccCchhHHHHHHHH
Confidence            67774321   12345789999999998644221111111   1         1246678889999743 1111112233


Q ss_pred             HHHHc---C------CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEH---N------FIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~---~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +....   .      ..+++.+||+++.|++++++.|.....
T Consensus       219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            32211   1      245888999999999999999988754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.12  E-value=6.2e-06  Score=60.53  Aligned_cols=83  Identities=11%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCCceEE
Q psy10891         15 YYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNFIGWT   90 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~   90 (142)
                      ...++|.+++|... .|. +...++.++.....       .++|.+||.||+|+.+.. ..+....|   ....| .+++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~-------~~~~~iivlNK~DL~~~~-~~~~~~~~~~~y~~~G-~~v~  196 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET-------LQVEPLIVLNKIDLLDDE-GMDFVNEQMDIYRNIG-YRVL  196 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH-------HTCEEEEEEECGGGCCHH-HHHHHHHHHHHHHTTT-CCEE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCch-hHHHHHHHHHHHHhCC-CcEE
Confidence            36899999988765 454 44556666544321       368889999999996521 11113333   34456 4589


Q ss_pred             EeeccCCCCHHHHHHHH
Q psy10891         91 ETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        91 ~~Sa~~~~~i~~l~~~l  107 (142)
                      .+||.++.|++++...+
T Consensus       197 ~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          197 MVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             ECBTTTTBTHHHHHHHH
T ss_pred             EEecCCCcCHHHHHHhc
Confidence            99999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.09  E-value=5.7e-06  Score=60.99  Aligned_cols=52  Identities=10%  Similarity=0.008  Sum_probs=36.8

Q ss_pred             CCCEEEEEeCCCCC--CC--CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHH
Q psy10891         55 PIPCMLLANKCDLP--HR--QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        55 ~~p~ilv~nK~D~~--~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  107 (142)
                      ..|+++++||.|..  +.  ....+.+..+++..+ .+++.+||+...++.++...-
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g-~~vv~iSAk~E~el~eL~~~~  256 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG-AEVVVVSARLEAELAELSGEE  256 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT-CEEEEECHHHHHHHHTSCHHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC-CeEEEeechhHHHHHHhchHH
Confidence            48999999999742  21  334566777887777 569999999866666555443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.08  E-value=6.4e-05  Score=55.26  Aligned_cols=42  Identities=10%  Similarity=0.029  Sum_probs=30.4

Q ss_pred             CCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891         54 SPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE   96 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~   96 (142)
                      ...|+++++|+.|..- .....+.+..++...+ .+++.+||+.
T Consensus       198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~-~~~i~~sA~~  240 (363)
T 1jal_A          198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEG-AVVVPVCAAI  240 (363)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTT-CEEEEECHHH
T ss_pred             cCCcEEEEEecccccccccHHHHHHHHHHHHcC-CCEEEechHH
Confidence            4599999999998642 2234566677777777 5699999764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.013  Score=43.32  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=42.9

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---------CCCCHHHHHHHHHHcC
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------RQVDINDIECFYKEHN   85 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------~~~~~~~~~~~~~~~~   85 (142)
                      .++.+|++++|+|.++|..  ..+.+..++....  ......|.+++.||.|...         .....++...+...+.
T Consensus       146 ~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~  221 (376)
T 4a9a_A          146 VARTCNLLFIILDVNKPLH--HKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR  221 (376)
T ss_dssp             HHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred             HHHhcCccccccccCccHH--HHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence            4578999999999998743  3333333333211  1124578889999999643         2355667776666665


Q ss_pred             C
Q psy10891         86 F   86 (142)
Q Consensus        86 ~   86 (142)
                      +
T Consensus       222 l  222 (376)
T 4a9a_A          222 I  222 (376)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.49  E-value=0.0023  Score=49.01  Aligned_cols=79  Identities=8%  Similarity=0.013  Sum_probs=48.2

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCCHHHHHHHHHHcCC----------
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVDINDIECFYKEHNF----------   86 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~~~~~~~~~~~~~----------   86 (142)
                      .+|.+++|+|........   .....+.        ..+|+ ++|.||+|...+.  ... ..+....+.          
T Consensus       213 ~pd~vllVvDa~~g~~~~---~~a~~~~--------~~~~i~gvVlNK~D~~~~~--g~~-l~~~~~~g~PI~fig~ge~  278 (504)
T 2j37_W          213 QPDNIVYVMDASIGQACE---AQAKAFK--------DKVDVASVIVTKLDGHAKG--GGA-LSAVAATKSPIIFIGTGEH  278 (504)
T ss_dssp             CCSEEEEEEETTCCTTHH---HHHHHHH--------HHHCCCCEEEECTTSCCCC--THH-HHHHHHHCCCEEEEECSSS
T ss_pred             cCceEEEEEeccccccHH---HHHHHHH--------hhcCceEEEEeCCccccch--HHH-HHHHHHhCCCeEEeccccc
Confidence            789999999998754311   2222232        12575 8899999986421  111 123333331          


Q ss_pred             -------ceEEEeeccCCCC-HHHHHHHHHHH
Q psy10891         87 -------IGWTETSTKEGLM-VNDSMKFLLDV  110 (142)
Q Consensus        87 -------~~~~~~Sa~~~~~-i~~l~~~l~~~  110 (142)
                             .|.+++|+..|.| +.++++++...
T Consensus       279 ~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             hhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence                   1223478889988 98888888765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.83  E-value=0.073  Score=40.13  Aligned_cols=67  Identities=13%  Similarity=-0.041  Sum_probs=39.2

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891         17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE   96 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   96 (142)
                      ..+|.+++|+|+........   ....+..       .-.+..+|.||.|...   .......+....+ .|+.+++.  
T Consensus       211 ~~pd~vlLVvDA~~gq~a~~---~a~~f~~-------~~~i~gVIlTKlD~~~---~gG~~ls~~~~~g-~PI~fig~--  274 (443)
T 3dm5_A          211 IHPHEVILVIDGTIGQQAYN---QALAFKE-------ATPIGSIIVTKLDGSA---KGGGALSAVAATG-APIKFIGT--  274 (443)
T ss_dssp             HCCSEEEEEEEGGGGGGHHH---HHHHHHH-------SCTTEEEEEECCSSCS---SHHHHHHHHHTTC-CCEEEEEC--
T ss_pred             hcCceEEEEEeCCCchhHHH---HHHHHHh-------hCCCeEEEEECCCCcc---cccHHHHHHHHHC-CCEEEEEc--
Confidence            36899999999986543222   2233321       1234568999999753   2223334455566 56777774  


Q ss_pred             CCC
Q psy10891         97 GLM   99 (142)
Q Consensus        97 ~~~   99 (142)
                      |++
T Consensus       275 Ge~  277 (443)
T 3dm5_A          275 GEK  277 (443)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.76  E-value=0.012  Score=43.77  Aligned_cols=33  Identities=6%  Similarity=-0.056  Sum_probs=19.4

Q ss_pred             CCCcchhhhh-------hhHhhhccCCEEEEEEeCCChhh
Q psy10891          1 MTEGQERFTW-------MTRVYYKDAHGCIIMFDLTNQNS   33 (142)
Q Consensus         1 Dt~G~e~~~~-------~~~~~~~~ad~ii~v~d~~~~~s   33 (142)
                      ||||+.++.+       .+..+++++|++++|+|+++..+
T Consensus        92 DtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           92 DIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             ECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            8999888665       45677899999999999986433

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.82  E-value=0.26  Score=36.96  Aligned_cols=60  Identities=12%  Similarity=-0.002  Sum_probs=35.1

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-C-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-P-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET   92 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (142)
                      .+|.+++|+|......   .......+.        ... | ..+|.||+|...+   ......+....+ .|+.++
T Consensus       210 ~~d~vllVvda~~g~~---~~~~~~~~~--------~~~~~i~gvVlnK~D~~~~---~g~~l~~~~~~~-~pi~~i  271 (432)
T 2v3c_C          210 NPDEIILVIDGTIGQQ---AGIQAKAFK--------EAVGEIGSIIVTKLDGSAK---GGGALSAVAETK-APIKFI  271 (432)
T ss_dssp             CCSEEEEEEEGGGGGG---HHHHHHHHH--------TTSCSCEEEEEECSSSCST---THHHHHHHHHSS-CCEEEE
T ss_pred             cCcceeEEeeccccHH---HHHHHHHHh--------hcccCCeEEEEeCCCCccc---hHHHHHHHHHHC-CCEEEe
Confidence            6899999999876532   222223332        345 6 7899999997431   122333556666 345444

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.81  E-value=0.13  Score=36.66  Aligned_cols=86  Identities=7%  Similarity=-0.008  Sum_probs=49.2

Q ss_pred             CCCcchh--hh-hhhH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC
Q psy10891          1 MTEGQER--FT-WMTR-----VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e~--~~-~~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~   71 (142)
                      ||||...  .. .++.     .....+|.+++|+|....   .........+.        ...+ ..+|.||.|...  
T Consensus       187 DTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~--------~~~~i~gvVlnk~D~~~--  253 (297)
T 1j8m_F          187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFN--------QASKIGTIIITKMDGTA--  253 (297)
T ss_dssp             ECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHH--------HTCTTEEEEEECGGGCT--
T ss_pred             eCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHH--------hhCCCCEEEEeCCCCCc--
Confidence            7888655  21 1221     123479999999998643   22222223332        2356 678999999743  


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDS  103 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  103 (142)
                       .......+....+ .|+.+++  +|++++++
T Consensus       254 -~~g~~~~~~~~~~-~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          254 -KGGGALSAVAATG-ATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -THHHHHHHHHTTT-CCEEEEE--CSSSTTCE
T ss_pred             -chHHHHHHHHHHC-cCEEEEe--CCCChhhc
Confidence             2233445566666 5677766  56666543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.49  E-value=0.36  Score=36.27  Aligned_cols=67  Identities=9%  Similarity=-0.036  Sum_probs=40.2

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      ..+.+++|+|........   .....+...       -.+..+|.||.|...   .......+....+ .|+.+++.  |
T Consensus       211 ~pd~vlLVlDa~~gq~a~---~~a~~f~~~-------~~~~gVIlTKlD~~a---~~G~als~~~~~g-~Pi~fig~--G  274 (433)
T 3kl4_A          211 KPDDVILVIDASIGQKAY---DLASRFHQA-------SPIGSVIITKMDGTA---KGGGALSAVVATG-ATIKFIGT--G  274 (433)
T ss_dssp             CCSEEEEEEEGGGGGGGH---HHHHHHHHH-------CSSEEEEEECGGGCS---CHHHHHHHHHHHT-CEEEEEEC--C
T ss_pred             CCcceEEEEeCccchHHH---HHHHHHhcc-------cCCcEEEEecccccc---cchHHHHHHHHHC-CCEEEEEC--C
Confidence            579999999997653322   222333211       135688999999743   2233444555566 67877775  6


Q ss_pred             CCH
Q psy10891         98 LMV  100 (142)
Q Consensus        98 ~~i  100 (142)
                      +++
T Consensus       275 e~v  277 (433)
T 3kl4_A          275 EKI  277 (433)
T ss_dssp             SSS
T ss_pred             CCh
Confidence            554

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=91.70  E-value=0.55  Score=30.66  Aligned_cols=77  Identities=10%  Similarity=-0.093  Sum_probs=46.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||.-  .......+..+|.+++++..+.. + ..+..++..+.....  ..++.++.+|.|+.+...  ........+
T Consensus        82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~--~~~~~~~~vv~N~~~~~~--~~~~~~~~~  153 (206)
T 4dzz_A           82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQA--YSRKVEARFLITRKIEMA--TMLNVLKES  153 (206)
T ss_dssp             ECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSC--GGGCCEEEEEECSBCTTE--EEEHHHHHH
T ss_pred             ECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHH--hCCCCcEEEEEeccCCCc--hHHHHHHHH
Confidence            566544  23445566779999999987654 4 566666666642210  124567799999998532  223445555


Q ss_pred             HHHcC
Q psy10891         81 YKEHN   85 (142)
Q Consensus        81 ~~~~~   85 (142)
                      ++.++
T Consensus       154 l~~~~  158 (206)
T 4dzz_A          154 IKDTG  158 (206)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            55565

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=89.52  E-value=2.1  Score=28.38  Aligned_cols=66  Identities=5%  Similarity=-0.114  Sum_probs=41.5

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN   85 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~   85 (142)
                      ....+..+|.+|+++..+ ..+...+...+..+...      .+.++.+|.|+.+.... ..........+.++
T Consensus        84 ~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~-~~~~~~~~~l~~~g  149 (209)
T 3cwq_A           84 LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL------GNNRFRILLTIIPPYPS-KDGDEARQLLTTAG  149 (209)
T ss_dssp             HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT------CSSSEEEEECSBCCTTS-CHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc------cCCCEEEEEEecCCccc-hHHHHHHHHHHHcC
Confidence            445667899999999865 45666666666666421      15678899999986320 12344445555565

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=88.63  E-value=0.12  Score=38.81  Aligned_cols=40  Identities=13%  Similarity=0.011  Sum_probs=24.4

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         21 GCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        21 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      +++|+.|...+.+..++ .++..+.        .++|+|+|.||+|...
T Consensus       151 ~v~fI~d~~~~l~~~Di-eilk~L~--------~~~~vI~Vi~KtD~Lt  190 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDL-VTMKKLD--------SKVNIIPIIAKADAIS  190 (427)
T ss_dssp             EEEEECCCC---CHHHH-HHHHHTC--------SCSEEEEEESCGGGSC
T ss_pred             EEEEEeCCCCCCCHHHH-HHHHHHh--------hCCCEEEEEcchhccc
Confidence            46677777655443332 3333331        5789999999999865

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=88.26  E-value=0.018  Score=42.27  Aligned_cols=73  Identities=8%  Similarity=-0.003  Sum_probs=42.4

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891         17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE   96 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   96 (142)
                      ...+.++++++.....-+..+..    +    ......+.|+++++||.|...+.........+.+..+. .+...++..
T Consensus       244 ~~i~~~~~~l~~~~~~~~g~l~~----l----~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~  314 (369)
T 3ec1_A          244 REIHPRVYQLNEGQTLFFGGLAR----L----DYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRY  314 (369)
T ss_dssp             SCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGG
T ss_pred             cccCceEEEEcCCceEEECCEEE----E----EEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchh
Confidence            67899999998742211111110    1    11123468999999999987633345555566677774 355555554


Q ss_pred             CC
Q psy10891         97 GL   98 (142)
Q Consensus        97 ~~   98 (142)
                      ..
T Consensus       315 ~~  316 (369)
T 3ec1_A          315 AA  316 (369)
T ss_dssp             TT
T ss_pred             hh
Confidence            33

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=85.79  E-value=1.9  Score=29.47  Aligned_cols=49  Identities=10%  Similarity=-0.011  Sum_probs=33.8

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD   66 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   66 (142)
                      ....+..+|.+|+++..+. .+...+..++..+...     ..+.++.+|.|+..
T Consensus       160 ~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-----~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          160 LKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-----NLFLPIFLIITRFK  208 (267)
T ss_dssp             HHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-----TCCCCEEEEEEEEC
T ss_pred             HHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-----hccCCEEEEEeccc
Confidence            4455667999999998754 4666666666666422     13567889999984

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=84.40  E-value=3.7  Score=27.43  Aligned_cols=72  Identities=8%  Similarity=-0.029  Sum_probs=44.8

Q ss_pred             hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEE
Q psy10891         11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWT   90 (142)
Q Consensus        11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~   90 (142)
                      .....+..+|.+++++..+ ..+...+..++..+..    ...+...+-+|.|+.+... ....+   .+.+.++. +++
T Consensus       133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~~~~~v~N~~~~~~-~~~~~---~~~~~~~~-~v~  202 (245)
T 3ea0_A          133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE----FEKPISRIEIILNRADTNS-RITSD---EIEKVIGR-PIS  202 (245)
T ss_dssp             THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT----CSSCCSCEEEEEESTTSCT-TSCHH---HHHHHHTS-CEE
T ss_pred             HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH----hCCCccceEEEEecCCCCC-CCCHH---HHHHHhCC-CeE
Confidence            3455677899999999865 5677777777777642    1223455789999998643 23333   34455663 355


Q ss_pred             Ee
Q psy10891         91 ET   92 (142)
Q Consensus        91 ~~   92 (142)
                      .+
T Consensus       203 ~~  204 (245)
T 3ea0_A          203 KR  204 (245)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=82.13  E-value=2.2  Score=31.37  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH--hCCCCCCCCCCCccccc
Q psy10891         54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ--EGLQNFPNNDDENMVKL  131 (142)
Q Consensus        54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~  131 (142)
                      ...|++++.||+|..    ..+++..+.   ....++.+|+..+.|++.|...+...+--.  ......+.+.++....+
T Consensus       248 ~~~p~i~v~nKid~~----~~eele~l~---~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~  320 (376)
T 4a9a_A          248 RYMPAIYVLNKIDSL----SIEELELLY---RIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVL  320 (376)
T ss_dssp             EEECEEEEEECGGGS----CHHHHHHHT---TSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEE
T ss_pred             hccceEEEEeccccc----CHHHHHHHh---cccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccc
Confidence            467999999999964    344443332   223478899999999999888877666321  11123333345555555


Q ss_pred             cCC
Q psy10891        132 SGP  134 (142)
Q Consensus       132 ~~~  134 (142)
                      ..|
T Consensus       321 ~a~  323 (376)
T 4a9a_A          321 RSD  323 (376)
T ss_dssp             BTT
T ss_pred             cCC
Confidence            544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-15
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-14
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	9e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-13
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-12
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-12
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-12
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-12
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-11
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-11
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-11
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-11
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-10
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-10
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-09
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-09
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-09
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-09
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-09
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-09
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	9e-09
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-08
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-07
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-06
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-06
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-06
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-06
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	8e-06
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	8e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-05
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-05
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-05
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-05
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-05
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-05
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-04
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-04
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.001
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.002
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	0.004

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 7e-15
 Identities = 28/112 (25%), Positives = 56/112 (50%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +   +Y+ +  C++ F + +  SF+N   WKK+      + +    P ++
Sbjct: 61  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
           L NK D+  RQV   + + + +++    + ETS K+   V  + +  +  ++
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 3e-14
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQER+  +T  YY+ A G ++++D+    +++N  +W K++         S I  ML
Sbjct: 59  DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIML 114

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           + NK DL H +    D    + E N + + ETS  +   V ++ K +L  + R 
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (151), Expect = 9e-14
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T++ +F N  +W K V+             +L+
Sbjct: 58  TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLV 113

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK D+  R V  +  E   KE   I + E+S K    VN+    L  ++  +
Sbjct: 114 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (150), Expect = 2e-13
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ +HG II++D+T+Q SF     W +++D   T    S +  +L+
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 117

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
            NKCDL  ++V   D+   + + N + + ETS  +   V D+   +   +      QN  
Sbjct: 118 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 177

Query: 122 N----NDDENMVKLSG 133
                 +D+  V L G
Sbjct: 178 ETTQKKEDKGNVNLKG 193

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-12
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G I+++D+T +++F         ++   T    + I  ML+
Sbjct: 63  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK---LDNWLNELETYCTRNDIVNMLV 119

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
            NK D  +R+VD N+   F ++H+ + + E S K    V  + + L++ +++  GL 
Sbjct: 120 GNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 2e-12
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +T  YY+ A G I+M+D+TN+ SF     W   +              +L+
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLV 116

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NKCD+   +V  ++      +H    + E S K+ + V  + + L+DV+  +
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (140), Expect = 4e-12
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+ A G ++++D+TN+ SF N   W ++++   +    + +  M+L
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 117

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            NKCD+  ++    +          I + ETS K  + V ++   L   +  + 
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 5e-12
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T+ YY+ A+  I+ +D+T + SF+   +W ++++   +    + +  +L+
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLV 116

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL  R+         + E   + + ETS KE   V      L   L+ +
Sbjct: 117 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +T  +++DA G ++MFDLT+Q SF N   W   +              +L
Sbjct: 70  DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVL 126

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           + NK DLP ++           +   I + ETS   G  V  +++ LLD++M++
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-11
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T ++++ +   W  D               +L+
Sbjct: 60  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIILI 115

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL  ++    +    + E N + + E S K G  V D+     
Sbjct: 116 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (131), Expect = 7e-11
 Identities = 38/126 (30%), Positives = 63/126 (50%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +   +Y+ A  C+++FD+T  N+FK    W+ +  ++ +  D    P ++
Sbjct: 57  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 116

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
           L NK DL +RQV     + +    N I + ETS KE + V  + + +    ++QE     
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176

Query: 121 PNNDDE 126
            N   E
Sbjct: 177 YNEFPE 182

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 8e-11
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +   Y +D+   ++++D+TN NSF+ T KW  DV  +     GS +  ML
Sbjct: 55  DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIML 110

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
           + NK DL  ++    +      +   + + ETS K G  V    + +
Sbjct: 111 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 157

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-10
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE F  +TR YY+ A G ++++D+T + +F +   W +D          S +  ML
Sbjct: 58  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIML 113

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGL 117
           + NK DL  R+    +    +   + + + ETS K    V ++       + R  Q+GL
Sbjct: 114 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +T  YY+DAH  ++++D+TN+ SF N   W  ++              +L 
Sbjct: 63  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA---QHDVALMLLG 119

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
                   R V   D E   KE+  + + ETS K GL V+ +   +   L R
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-09
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+F  M  +Y K+  G I+++ L NQ SF++    +  +           +P +L+
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILV 114

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
            NK DL   +   +       E     + ETS K   MV++    ++
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-09
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +  +YY+D++G I+++D+T+++SF+    W K++         + I   +
Sbjct: 58  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCI 113

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
           + NK DL   +         Y E        TS K+   + +    L   ++
Sbjct: 114 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 50.7 bits (120), Expect = 2e-09
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE +  +   Y++   G + +F +T   SF  T  +++ +       +   +P +L
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLL 114

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           + NK DL  ++    +      +   + + ETS K    V+     L+  +  +
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.5 bits (119), Expect = 3e-09
 Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +   +Y+ A  C++++D+TN +SF+N   W+ +  +   ++     P ++
Sbjct: 58  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 117

Query: 61  LANKCDLPHRQVDINDI--ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           L NK D    +  +++   +   K    I    TS K  + V+ + + +    ++Q
Sbjct: 118 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-09
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQERF  +TR YY+ A G ++++D+T++ ++     W  D  +         I  +L 
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILC 116

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
            NK DL   +         + + N + + ETS   G  V ++       ++ +
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 5e-09
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T GQER+  +  +YY+ A   I+++D+TN+ SF     W K++  +        I   L 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIALS 117

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
            NK DL +++         Y + N + + ETS K  + VN+    +   L +
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 9e-09
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE F  M   Y +  HG +++F + ++ SF    K    +     + D    P +L
Sbjct: 60  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVL 116

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
           + NK DL  ++         +   + + + E S K  L V+++ + L+  + + +
Sbjct: 117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 3e-08
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQERF  +  +YY++A   ++++D+T   SF     W K++  + +      +    
Sbjct: 58  DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
           +    +   R+V   + E   +E   + + ETS K G  VND    + 
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIG 164

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE ++ M   Y +   G + +F + N  SF++  ++++ +     + D   +P +L
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVL 113

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           + NKCDL  R V+    +   + +  I + ETS K    V D+   L+  + +
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 4e-07
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
           GQE F  M   Y +   G +++F +T++ SF+   K+++ +       D    P +L+ N
Sbjct: 62  GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK---DRDEFPMILIGN 118

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
           K DL H++    +          + + E S K  + V+ +   L+ V+ + +
Sbjct: 119 KADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
           T G E+FT M  +Y K+  G  +++ +T Q++F +    ++ +     + D   +P +L+
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILV 114

Query: 62  ANKCDLPHRQV-DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
            NKCDL   +V      +   ++     + E+S K  + VN+    L+  + R
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 2/114 (1%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T G  +F  M R+     H  I+++ +T++ S +      + +       D   IP ML
Sbjct: 56  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC--EIKGDVESIPIML 113

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
           + NKCD    +   +             + ETS K    V +  + LL++  R+
Sbjct: 114 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 3e-06
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T G ERF  +  +YY+ +   II++D+T + +F     W +++           I   +
Sbjct: 59  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG----PPSIVVAI 114

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
             NKCDL   +  +      Y +     + ETS K  + +N+
Sbjct: 115 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 156

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 5   QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
           QE +  +  + Y      +I F + N  SF+N  +       +        +P +L+  +
Sbjct: 67  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA----PNVPFLLIGTQ 122

Query: 65  CDLP-------------HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
            DL               + + +   +   KE     + E S      +  
Sbjct: 123 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 8e-06
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 17/115 (14%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE +  +  + Y      +I F L +  SF+N                    P +L
Sbjct: 59  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH----CPNTPIIL 114

Query: 61  LANKCDLPHRQVDINDI-------------ECFYKEHNFIGWTETSTKEGLMVND 102
           +  K DL   +  I  +                 KE   + + E S      +  
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 8e-06
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE F+ M   Y +   G +I++ +T++ SF++  ++ + +       D    P +L
Sbjct: 58  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMIL 114

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG-LMVNDSMKFLLDVLMRQ 114
           +ANK DL H +    D          I + ETS K+  L V+ +   L+ V+ +Q
Sbjct: 115 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 17/106 (16%)

Query: 5   QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
              +  +  + Y D+   +I FD++   +  + LK  K    +           +L+  K
Sbjct: 60  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF----CPNTKMLLVGCK 115

Query: 65  CDLPH-------------RQVDINDIECFYKEHNFIGWTETSTKEG 97
            DL                 V  +      K+     + E S  + 
Sbjct: 116 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 17/114 (14%), Positives = 40/114 (35%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
             GQ       R YY D    I + D T+++      K    +  +  L D + +     
Sbjct: 68  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 127

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
            ++           ++     +        +S  +G  + + + +L+DV+  ++
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
              GQ++   + R YY    G I + D  +++      +    +     + D      ++
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD---AIILI 118

Query: 61  LANKCDLPHRQVDINDIECFYKE---HNFIGWTETSTKEGLMVNDSMKFL 107
            ANK DLP         E                +    G  + + + +L
Sbjct: 119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE F  +T+ YY+ A  C+++F  T++ SF+    W++ V  +        IP  L
Sbjct: 57  DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTAL 111

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
           + NK DL       N+      +   + +  TS KE L V++  K+L +  ++
Sbjct: 112 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-05
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE+F  +   YY  A   IIMFD+T++ ++KN   W +D+   C       IP +L
Sbjct: 58  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVL 112

Query: 61  LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
             NK D+  R+V    I    K++  + + + S K          +L   L+    L+
Sbjct: 113 CGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 17/128 (13%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T GQE +  +  + Y      ++ F + + +SF+N  +                 P +L
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC----PKTPFLL 112

Query: 61  LANKCDLPHRQVDIN-------------DIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
           +  + DL      I                E   ++   + + E S      + +     
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

Query: 108 LDVLMRQE 115
           +   +   
Sbjct: 173 ILAALEPP 180

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 13/122 (10%), Positives = 36/122 (29%)

Query: 4   GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
            +     +   +   A   + + D          +       L  +++  +    ++  N
Sbjct: 57  HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 116

Query: 64  KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
           K D+   +      +   KE N +  T ++    L  + +    L    ++      P  
Sbjct: 117 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK 176

Query: 124 DD 125
            +
Sbjct: 177 VE 178

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
              GQ+      R Y++   G I + D  ++   ++  +  + + ++  L+       ++
Sbjct: 52  DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG---ATLLI 108

Query: 61  LANKCDLP-HRQVDINDIECFYKEHNFIGWT--ETSTKEGLMVNDSMKFLLDVLMRQ 114
            ANK DLP     +               W     S   G  +   + +LLD +  +
Sbjct: 109 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 10  WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69
              R Y+++    I + D  ++  F+ T +   ++  +  LS    +P ++ ANK DL  
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC---VPVLIFANKQDLLT 131

Query: 70  RQVDINDIECF---YKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
                   E                 S   G  V D M ++  
Sbjct: 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 6e-04
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 5   QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCMLLAN 63
           +E        +   A   I +F L ++NSF+   +    +  L+     G  +  +   +
Sbjct: 57  REEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 64  K-CDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
           +      R V          +     + ET    GL V+   + +   ++   
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 14/110 (12%), Positives = 37/110 (33%)

Query: 2   TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
             GQ++   + R Y+++  G I + D  ++       +    +  +  L D   +     
Sbjct: 51  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110

Query: 62  ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
            +  +  +     + +      H       T    G  + + + +L + L
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 17/126 (13%)

Query: 1   MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
            T G E +  +  + Y D    ++ F + + +S +N  +                +P +L
Sbjct: 56  DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIIL 111

Query: 61  LANKCDLPHRQVDINDIEC-------------FYKEHNFIGWTETSTKEGLMVNDSMKFL 107
           + NK DL + +    ++                       G+ E S K    V +  +  
Sbjct: 112 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

Query: 108 LDVLMR 113
               ++
Sbjct: 172 TRAALQ 177

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 8   FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67
            T     + +   G ++++D+T++ SF+  L  K  +D      + + I      NK DL
Sbjct: 62  DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV---GNKADL 118

Query: 68  PHRQVDINDIECFYKEHNFIGWTETSTKEG-LMVNDSMKFLLDVLMRQ 114
            H +    +            + E S   G   + +    L   + R+
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.92
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.92
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.91
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.91
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.89
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.87
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.85
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.85
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.82
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.81
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.8
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.79
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.78
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.71
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.63
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.58
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.56
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.55
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.54
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.5
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.49
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.47
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.45
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.43
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.42
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.42
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.38
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.36
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.31
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.29
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.26
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.23
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.18
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.15
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.13
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.11
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.1
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.07
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.9
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.87
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.86
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.85
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.85
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.67
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.62
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.59
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.58
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.45
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.4
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.66
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.59
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.37
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.99
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.89
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.93
d1okkd2	207	GTPase domain of the signal recognition particle r	88.9
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.6
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.69
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.03
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	81.93
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.76

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-26  Score=150.31  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=92.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..|++++|++|+|||++++.|++.+..|+..+...   .....+|+++|+||+|+.. +.+...++..
T Consensus        54 D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~---~~~~~~piilvgnK~Dl~~~~~v~~~~~~~  130 (168)
T d2gjsa1          54 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA---RQTDDVPIILVGNKSDLVRSREVSVDEGRA  130 (168)
T ss_dssp             ECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHH---CC--CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ecccccccceecccchhhhhhhceeccccccccccccccccchhhcc---cccccceEEEeecccchhhhcchhHHHHHH
Confidence            89999999999999999999999999999999999999999988643   2456789999999999977 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+..++
T Consensus       131 ~~~~~~-~~~~e~Sak~~~~v~~~f~~l~~~i~~~~  165 (168)
T d2gjsa1         131 CAVVFD-CKFIETSAALHHNVQALFEGVVRQIRLRR  165 (168)
T ss_dssp             HHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcC-CEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            999999 56999999999999999999999887764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-24  Score=143.41  Aligned_cols=115  Identities=25%  Similarity=0.442  Sum_probs=93.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~   78 (142)
                      ||+|++++..++..+++.++++++|||++++.||..+..|+.++..........++|+++|+||+|+..  +.+..+++.
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~  137 (175)
T d1ky3a_          58 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ  137 (175)
T ss_dssp             CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred             ccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH
Confidence            899999999999999999999999999999999999999999887654444556899999999999876  447788899


Q ss_pred             HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .+++.++..+|++|||++|.||+++|.+|++.+++++
T Consensus       138 ~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         138 ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            9999998778999999999999999999999998875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.2e-24  Score=143.14  Aligned_cols=109  Identities=28%  Similarity=0.431  Sum_probs=99.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++++..+++.+++++|++++|||++++.||..+..|+..+.+..   ...++|+|+|+||+|+.. +.+..+++..
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~---~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~  134 (169)
T d1x1ra1          58 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMILVANKVDLMHLRKVTRDQGKE  134 (169)
T ss_dssp             ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             ccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhc---cccCccEEEEecccchhhhceeehhhHHH
Confidence            799999999999999999999999999999999999999999987543   446799999999999977 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~  113 (142)
                      +++.+++ +|++|||+++. ||+++|..|++.+.+
T Consensus       135 ~~~~~~~-~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         135 MATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHTC-CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-EEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            9999995 69999999986 999999999998875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=5.5e-25  Score=144.05  Aligned_cols=106  Identities=31%  Similarity=0.554  Sum_probs=98.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..+++.+++++|++++|||++++.|++.+..|+..+....     +++|++||+||+|+.+ +.+..+++..
T Consensus        57 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~iilVgnK~Dl~~~~~v~~~~~~~  131 (164)
T d1z2aa1          57 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDSCIKNEEAEG  131 (164)
T ss_dssp             CCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             ccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC-----CCceEEEeeccCCcccceeeeehhhHH
Confidence            899999999999999999999999999999999999999999987665     6899999999999876 7788899999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.+++ +|++|||++|.||+++|..|++.++
T Consensus       132 ~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         132 LAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             HHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             HHHHcCC-EEEEeccCCCcCHHHHHHHHHHHHh
Confidence            9999995 7999999999999999999999876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=143.93  Aligned_cols=112  Identities=28%  Similarity=0.444  Sum_probs=101.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++++|++++|||++++.||..+..|+..+.+..   ...++|++||+||+|+.. +.+..+.+..
T Consensus        60 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~  136 (173)
T d2fn4a1          60 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQRQVPRSEASA  136 (173)
T ss_dssp             ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHh---ccCCCceEEEEEeechhhccccchhhhhH
Confidence            799999999999999999999999999999999999999998886432   446899999999999876 6778889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+.+++.
T Consensus       137 ~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         137 FGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcC-CEEEEEeCCCCcCHHHHHHHHHHHHHHHhc
Confidence            999998 569999999999999999999999987753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.9e-25  Score=145.42  Aligned_cols=112  Identities=33%  Similarity=0.535  Sum_probs=100.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++|+|||++++.+++.+..|+..+.   ........|++||+||+|+.. +.+..+++..
T Consensus        70 dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~  146 (186)
T d2f7sa1          70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCENPDIVLIGNKADLPDQREVNERQARE  146 (186)
T ss_dssp             EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCC---CCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhh---hhccCCCceEEEEeeeccchhhhcchHHHHHH
Confidence            789999999999999999999999999999999999999988774   223456788999999999976 7789999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++.+++ ++++|||++|.||+++|.+|++.+.++..
T Consensus       147 ~~~~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         147 LADKYGI-PYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             HHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999984 69999999999999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-24  Score=141.89  Aligned_cols=109  Identities=17%  Similarity=0.288  Sum_probs=96.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+||++|  ++..+++++|++|+|||++++.|+..+..|+..+..   ....+++|+++|+||+|+.. +.++.+++..
T Consensus        62 ~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~---~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~  136 (172)
T d2g3ya1          62 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR---ARQTEDIPIILVGNKSDLVRCREVSVSEGRA  136 (172)
T ss_dssp             TTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHT---SGGGTTSCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhh---ccccCCceEEEEeccccccccccccHHHHHH
Confidence            57899988  577899999999999999999999999999988862   22446899999999999876 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++..++ ++|++|||++|.||+++|..|++.+..++
T Consensus       137 ~a~~~~-~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         137 CAVVFD-CKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHHcC-CeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            999999 57999999999999999999999987663

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.91  E-value=3.7e-24  Score=140.74  Aligned_cols=109  Identities=25%  Similarity=0.421  Sum_probs=96.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++++..++..+++++|++++|||++++.|+..+..|+..+.+..   ...++|+++|+||+|+.. +.+..+++..
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiivgnK~Dl~~~~~v~~~~~~~  134 (168)
T d1u8za_          58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhh---CCCCCcEEEEeccccccccccccHHHHHH
Confidence            799999999999999999999999999999999999999999887443   457899999999999876 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +++.++ .++++|||++|.||+++|.+|++.+.+
T Consensus       135 ~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         135 RADQWN-VNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHcC-CeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            999999 569999999999999999999988753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3e-24  Score=141.21  Aligned_cols=108  Identities=30%  Similarity=0.532  Sum_probs=97.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++|+|||++++.|+.....|+..+...    .....|+++|+||+|+.. +.+..+++..
T Consensus        60 Dt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~v~~~~~~~  135 (169)
T d3raba_          60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNKCDMEDERVVSSERGRQ  135 (169)
T ss_dssp             EECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----CCSCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcc----cCCcceEEEEEeecccccccccchhhhHH
Confidence            89999999999999999999999999999999999999888776432    346789999999999876 6788889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +++.++ .++++|||++|.||+++|++|++.+++
T Consensus       136 ~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         136 LADHLG-FEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             HHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             HHHHcC-CEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            999998 569999999999999999999998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.9e-24  Score=140.80  Aligned_cols=109  Identities=30%  Similarity=0.467  Sum_probs=98.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.++++++++++|||++++.++..+..|+..+.+.    ....+|++||+||+|+.. +.+..+++..
T Consensus        60 Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~ilvgnK~D~~~~~~v~~~~~~~  135 (171)
T d2ew1a1          60 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGNKIDLAERREVSQQRAEE  135 (171)
T ss_dssp             EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCSSCHHHHHH
T ss_pred             ECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc----ccccccEEEEEeecccccccchhhhHHHH
Confidence            89999999999999999999999999999999999999998887532    335789999999999876 6788889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++..++ ++++|||++|.||+++|..|+..++..
T Consensus       136 ~~~~~~~-~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         136 FSEAQDM-YYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHhCCC-EEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            9999984 699999999999999999999888765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.9e-24  Score=140.28  Aligned_cols=108  Identities=23%  Similarity=0.316  Sum_probs=98.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..++.++|++++|||++++.||..+..|+..+.+..   ...++|++||+||+|+.. +.++.+++..
T Consensus        58 d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~r~v~~~~~~~  134 (167)
T d1xtqa1          58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDLHMERVISYEEGKA  134 (167)
T ss_dssp             ECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHH---CSSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcc---cccccceeeeccccccccccchhHHHHHH
Confidence            799999999999999999999999999999999999999998887543   446799999999999876 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .+|++|||++|.||+++|..|+..+.
T Consensus       135 ~a~~~~-~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         135 LAESWN-AAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            999999 56999999999999999999998775

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-24  Score=141.48  Aligned_cols=108  Identities=20%  Similarity=0.307  Sum_probs=94.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|++.|..+++.|++++|++|+|||++++.||+.+..|+ ..+....     +++|++||+||+|+..          
T Consensus        56 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~  130 (177)
T d1kmqa_          56 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAK  130 (177)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTSCEEEEEECGGGTTCHHHHHHHHH
T ss_pred             ccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC-----CCCceEEeeecccccchhhHHHHHHH
Confidence            79999999999999999999999999999999999877654 4444332     6799999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                         +.+..+++..+++.++..+|++|||++|.||+++|+.+++.+++
T Consensus       131 ~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         131 MKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             hhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence               34778889999999997789999999999999999999998763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=138.31  Aligned_cols=111  Identities=32%  Similarity=0.521  Sum_probs=100.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++.|..+++.++.++|++++|||++++.||+.+..|+..+.+.    ...++|++||+||+|+.. +.+..++...
T Consensus        58 d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~----~~~~~piilv~nK~D~~~~~~~~~~~~~~  133 (173)
T d2a5ja1          58 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSDLESRRDVKREEGEA  133 (173)
T ss_dssp             CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh----CCCCCeEEEEecCCchhhhhhhHHHHHHH
Confidence            89999999999999999999999999999999999999999888543    336799999999999876 6788889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++.++ .+|++|||++|.||+++|..+++.++++..
T Consensus       134 ~a~~~~-~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         134 FAREHG-LIFMETSAKTACNVEEAFINTAKEIYRKIQ  169 (173)
T ss_dssp             HHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999998 569999999999999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=138.00  Aligned_cols=109  Identities=26%  Similarity=0.417  Sum_probs=97.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      |++|++.+..+++.|++++|++++|||++++.||+.+..|+..+.+..   ..+++|++||+||+|+.. +.+..++...
T Consensus        57 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~---~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~  133 (167)
T d1c1ya_          57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQN  133 (167)
T ss_dssp             EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             cccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhc---CCCCCeEEEEEEecCcccccccchhHHHH
Confidence            789999999999999999999999999999999999999998886432   456899999999999976 6678888888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.+...+|++|||++|.||+++|..|++.+.
T Consensus       134 ~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             HHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            888876578999999999999999999998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-23  Score=136.39  Aligned_cols=110  Identities=27%  Similarity=0.470  Sum_probs=95.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..+++.+++++|++++|||++++.||..+..|+..+.+..   .....|+|+|+||+|+.. +.+..+++..
T Consensus        59 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~  135 (171)
T d2erya1          59 DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK---DRDEFPMILIGNKADLDHQRQVTQEEGQQ  135 (171)
T ss_dssp             ECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCSEEEEEECTTCTTSCSSCHHHHHH
T ss_pred             cccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhc---ccCCCCEEEEEeccchhhhccchHHHHHH
Confidence            789999999999999999999999999999999999999998876433   446799999999999876 6788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+.++
T Consensus       136 ~~~~~~-~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         136 LARQLK-VTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            999999 5699999999999999999999998655

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-24  Score=141.38  Aligned_cols=108  Identities=29%  Similarity=0.514  Sum_probs=90.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++++..+++.+++++|++++|||++++.||..+..|+..+....    ....|++||+||+|+.. +.++.+++..
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~----~~~~~~ilvgnK~Dl~~~~~v~~~e~~~  133 (167)
T d1z08a1          58 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKIDLEKERHVSIQEAES  133 (167)
T ss_dssp             ECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH----GGGSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc----ccccceeeeccccccccccccchHHHHH
Confidence            799999999999999999999999999999999999999988775332    35788999999999876 7789999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+++
T Consensus       134 ~a~~~~-~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         134 YAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHHHcC-CeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            999999 569999999999999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=140.02  Aligned_cols=107  Identities=19%  Similarity=0.304  Sum_probs=93.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|+++|..++..+++++|++++|||++++.||+.... |...+....     +++|+++|+||+|+.+          
T Consensus        63 D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-----~~~~~ilvgnK~Dl~~~~~~~~~~~~  137 (185)
T d2atxa1          63 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-----PNVPFLLIGTQIDLRDDPKTLARLND  137 (185)
T ss_dssp             CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECTTSTTCHHHHHHHTT
T ss_pred             cccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC-----CCCCeeEeeeccccccchhhhhhhhh
Confidence            899999999999999999999999999999999987654 445554333     6899999999999853          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                         +.++.+++..+++.++..+|++|||++|.||+++|+.+++.++
T Consensus       138 ~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         138 MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence               4678889999999998777999999999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-24  Score=141.57  Aligned_cols=109  Identities=26%  Similarity=0.377  Sum_probs=95.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++++|++++|||++++.|+..+..|+..+....  ....++|++||+||+|+.. +.+..+++..
T Consensus        56 d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilVgnK~Dl~~~~~v~~~e~~~  133 (171)
T d2erxa1          56 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGNKCDESPSREVQSSEAEA  133 (171)
T ss_dssp             ECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH--C---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhh--ccCCCCcEEEEeecccccccccccHHHHHH
Confidence            799999999999999999999999999999999999999987775432  1346799999999999876 7788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+.
T Consensus       134 ~~~~~~-~~~~e~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         134 LARTWK-CAFMETSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             HHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHHcC-CeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            999999 56999999999999999999987653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-23  Score=135.53  Aligned_cols=109  Identities=26%  Similarity=0.462  Sum_probs=99.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |++|++.+..+++.++++++++++|||++++.||+.+..|+..+.+..   ..+++|+++|+||+|+..+.+..+++..+
T Consensus        57 d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (166)
T d1ctqa_          57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCDLAARTVESRQAQDL  133 (166)
T ss_dssp             EECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TCSSCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred             eccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhc---CCCCCeEEEEecccccccccccHHHHHHH
Confidence            689999999999999999999999999999999999999999887433   45679999999999997777889999999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++.+++ +|++|||++|.||+++|..|++.+.+
T Consensus       134 ~~~~~~-~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         134 ARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHhCC-eEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            999994 69999999999999999999988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.5e-23  Score=136.40  Aligned_cols=106  Identities=25%  Similarity=0.470  Sum_probs=96.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++++..++..++++++++|+|||++++.||..+..|+..+...    .....|+++|+||+|+.+ +.+..+++..
T Consensus        59 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~~~~~~  134 (167)
T d1z0ja1          59 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVREVMERDAKD  134 (167)
T ss_dssp             EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhc----cCCcceEEEecccchhccccchhHHHHHH
Confidence            78999999999999999999999999999999999999998777533    346899999999999976 7788999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+
T Consensus       135 ~~~~~~-~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         135 YADSIH-AIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHcC-CEEEEEecCCCCCHHHHHHHHHHhC
Confidence            999998 4699999999999999999998876

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-22  Score=133.63  Aligned_cols=113  Identities=25%  Similarity=0.495  Sum_probs=101.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|+.++...+..++..+++++++||.+++.|+..+..|+..+.+........++|++||+||+|+.++.+..+++..+
T Consensus        61 d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~  140 (174)
T d1wmsa_          61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW  140 (174)
T ss_dssp             ECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred             cccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHH
Confidence            78999999999999999999999999999999999999999888765544555689999999999997778899999999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ++..+..+|++|||++|.||+++|..|++.++.
T Consensus       141 ~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         141 CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            998776779999999999999999999998863

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=136.18  Aligned_cols=106  Identities=40%  Similarity=0.567  Sum_probs=96.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..++.++|++++|||++++.|+..+..|+..+....    ..++|++||+||+|+.+ +.+..+++..
T Consensus        55 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~----~~~~~iilvgnK~Dl~~~~~~~~~~~~~  130 (164)
T d1yzqa1          55 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGNKTDLADKRQVSIEEGER  130 (164)
T ss_dssp             EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhc----CCCceEEEEecccchhhhhhhhHHHHHH
Confidence            789999999999999999999999999999999999999998876432    35799999999999976 6778889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +++.++ .+|++|||++|.||+++|.+|++.+
T Consensus       131 ~~~~~~-~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         131 KAKELN-VMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             HHHHcC-CEEEEecCCCCcCHHHHHHHHHHhh
Confidence            999998 4699999999999999999998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4e-23  Score=135.29  Aligned_cols=106  Identities=29%  Similarity=0.492  Sum_probs=95.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||+++..|+..+..|+..+.+.    .....|+++|+||+|+.. ..+..+++..
T Consensus        59 D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~~~~~~~~~  134 (166)
T d1z0fa1          59 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQ  134 (166)
T ss_dssp             ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhh----ccccceEEEEcccccchhhcccHHHHHHH
Confidence            79999999999999999999999999999999999999998887532    346789999999999866 6677888999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +++..+ .++++|||++|.||+++|..|++.+
T Consensus       135 ~~~~~~-~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         135 FAEENG-LLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999998 5799999999999999999998876

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-23  Score=138.86  Aligned_cols=107  Identities=31%  Similarity=0.537  Sum_probs=93.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|++++..+++.+++++|++++|||++++.||+.+..|+..+.+.+     +++|+++|+||+|+...... +....+
T Consensus        58 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~-~~~~~~  131 (170)
T d1i2ma_          58 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVK-AKSIVF  131 (170)
T ss_dssp             ECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-----CSCCEEEEEECCCCSCSCCT-TTSHHH
T ss_pred             ccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc-----CCCceeeecchhhhhhhhhh-hHHHHH
Confidence            799999999999999999999999999999999999999999887665     68999999999999763333 334467


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      +...+ .+|++|||++|.||+++|.+|++.++.+
T Consensus       132 ~~~~~-~~~~e~Sak~~~~v~e~f~~l~~~l~~~  164 (170)
T d1i2ma_         132 HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD  164 (170)
T ss_dssp             HSSCS-SEEEEEBTTTTBTTTHHHHHHHHHHHTC
T ss_pred             HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            77777 5699999999999999999999998754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.6e-23  Score=137.52  Aligned_cols=111  Identities=32%  Similarity=0.530  Sum_probs=99.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+|..+++++|++|+|||++++.++.....|+..+.+.    ...++|+++|+||+|+.. ..+..+....
T Consensus        61 Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~~~~~~~~~~  136 (194)
T d2bcgy1          61 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNKCDLKDKRVVEYDVAKE  136 (194)
T ss_dssp             CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhc----ccCCceEEEEEeccccccccchhHHHHhh
Confidence            89999999999999999999999999999999999999888777532    346889999999999987 6788888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ++...+ .++++|||++|.||+++|..|++.+.+...
T Consensus       137 ~~~~~~-~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         137 FADANK-MPFLETSALDSTNVEDAFLTMARQIKESMS  172 (194)
T ss_dssp             HHHHTT-CCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             hhhccC-cceEEEecCcCccHHHHHHHHHHHHHHHhh
Confidence            999888 459999999999999999999999987543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-23  Score=138.08  Aligned_cols=107  Identities=30%  Similarity=0.541  Sum_probs=96.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..+++.+++++|++++|||+++..|+..+..|+..+.+.    ..+++|++||+||+|+.. +.++.+.+..
T Consensus        61 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~e~~~~  136 (170)
T d1r2qa_          61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGNKADLANKRAVDFQEAQS  136 (170)
T ss_dssp             EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc----cCCCceEEeecccccccccccccHHHHHH
Confidence            78999999999999999999999999999999999999998887532    336899999999999876 7789999999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .+|++|||++|.||+++|..|++.+.
T Consensus       137 ~~~~~~-~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         137 YADDNS-LLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             HHHhcC-CEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            999988 56999999999999999999987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=136.64  Aligned_cols=108  Identities=27%  Similarity=0.419  Sum_probs=97.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++.+..++..+++++|++++|||++++.||..+..|+..+....   ..+++|++||+||+|+.. +.+..+++..
T Consensus        57 d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~~~~~~~~~~~  133 (167)
T d1kaoa_          57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEGRA  133 (167)
T ss_dssp             ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhc---cCCCCCEEEEEEccchhhcccchHHHHHH
Confidence            789999999999999999999999999999999999999998876332   456899999999999876 6788889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .++++|||++|.||+++|..|++.+.
T Consensus       134 ~~~~~~-~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         134 LAEEWG-CPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            999998 46999999999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-22  Score=134.38  Aligned_cols=111  Identities=31%  Similarity=0.564  Sum_probs=97.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|+++|..++..+++++|++|+|||++++.||..+..|+..+..+.    .+++|++||+||+|+.+ +....+....
T Consensus        59 d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~  134 (175)
T d2f9la1          59 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLRAVPTDEARA  134 (175)
T ss_dssp             ECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhc----CCCCcEEEEEeeecccccccchHHHHHH
Confidence            799999999999999999999999999999999999999998886443    36789999999999976 5566677777


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +....+ .++++|||++|.|++++|..++..+.+...
T Consensus       135 ~~~~~~-~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         135 FAEKNN-LSFIETSALDSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             hhcccC-ceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            777777 579999999999999999999999876543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.3e-23  Score=135.24  Aligned_cols=111  Identities=28%  Similarity=0.468  Sum_probs=99.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++++|||++++.++..+..|+..+.+.    ...++|+++|+||+|+.. ..+.......
T Consensus        60 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~D~~~~~~~~~~~~~~  135 (174)
T d2bmea1          60 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGNKKDLDADREVTFLEASR  135 (174)
T ss_dssp             EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccc----cCCceEEEEEEecccccchhchhhhHHHH
Confidence            89999999999999999999999999999999999999999887643    236799999999999866 6677888889


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +++..+ .++++|||++|.|++++|.++++.++++..
T Consensus       136 ~~~~~~-~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         136 FAQENE-LMFLETSALTGENVEEAFVQCARKILNKIE  171 (174)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCC-CEEEEeeCCCCcCHHHHHHHHHHHHHHHHh
Confidence            999988 569999999999999999999999987643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.4e-23  Score=135.97  Aligned_cols=110  Identities=32%  Similarity=0.529  Sum_probs=84.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..+++.+++++|++|+|||++++.|+..+..|+..+...    ...+.|+++|+||.|+.. +....+++..
T Consensus        61 D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~~k~D~~~~~~~~~~~~~~  136 (173)
T d2fu5c1          61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKRQVSKERGEK  136 (173)
T ss_dssp             EC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh----ccCCceEEEEEecccchhhcccHHHHHHH
Confidence            89999999999999999999999999999999999999998887532    346799999999999987 5667778888


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++...+ .++++|||++|.||.++|.+|++.+.++.
T Consensus       137 ~~~~~~-~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         137 LALDYG-IKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             HHHHHT-CEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            899888 56999999999999999999999997764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.9e-23  Score=133.73  Aligned_cols=110  Identities=25%  Similarity=0.309  Sum_probs=95.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||+|++.+. .+..+++++|++++|||++++.||..+..|+..+....   ...+.|+++|+||+|+.. +.++.+++..
T Consensus        56 D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~r~V~~~e~~~  131 (168)
T d2atva1          56 DTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSRQVSTEEGEK  131 (168)
T ss_dssp             ECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccc---cccCcceeeeccchhhhhhccCcHHHHHH
Confidence            799999885 56778999999999999999999999998876554322   446899999999999976 6789999999


Q ss_pred             HHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHHHh
Q psy10891         80 FYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~~~  115 (142)
                      +++.++ .+|++|||++|. +|+++|..|++.+.+++
T Consensus       132 ~a~~~~-~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         132 LATELA-CAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            999999 569999999998 59999999999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-22  Score=134.27  Aligned_cols=109  Identities=16%  Similarity=0.296  Sum_probs=94.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKW-KKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|+++|..++..+++++|++++|||++++.||+.+..| ...+....     .++|+++|+||+|+.+          
T Consensus        57 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-----~~~~i~lvgnK~Dl~~~~~~~~~~~~  131 (191)
T d2ngra_          57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAK  131 (191)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECGGGGGCHHHHHHHHT
T ss_pred             ccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcC-----CCCceEEEeccccccccchhhhhhhh
Confidence            7999999999999999999999999999999999998765 45454333     6899999999999742          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                         +.+..+++..+++.++..+|++|||++|.||+++|+.++..+++.
T Consensus       132 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             cccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence               358889999999998767799999999999999999999887544

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.3e-22  Score=132.91  Aligned_cols=116  Identities=31%  Similarity=0.538  Sum_probs=102.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|++.+..++..++..+|++++|||++++.++..+..|+..+..........++|+++|+||+|+.++.+..+....+
T Consensus        57 d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~  136 (184)
T d1vg8a_          57 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW  136 (184)
T ss_dssp             EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH
T ss_pred             ecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHH
Confidence            78999999999999999999999999999999999999999888765433344578999999999997777888888888


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      +......++++|||++|.||.++|.+|++.++++..
T Consensus       137 ~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         137 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             HHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccc
Confidence            877655789999999999999999999999887643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-22  Score=130.60  Aligned_cols=110  Identities=30%  Similarity=0.488  Sum_probs=99.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++++..+++.++.++|++++|||++++.++..+..|+..+.+   .......|+++++||.|...+.+..+++..+
T Consensus        62 Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~  138 (177)
T d1x3sa1          62 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET---YCTRNDIVNMLVGNKIDKENREVDRNEGLKF  138 (177)
T ss_dssp             EECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTT---CCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred             ECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcc---cccccceeeEEEeeccccccccccHHHHHHH
Confidence            7999999999999999999999999999999999999999998863   2345678999999999987778889999999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++.++ .++++|||++|.||+++|+++++.++++
T Consensus       139 ~~~~~-~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         139 ARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             HHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHCC-CEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            99999 4699999999999999999999999865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.6e-22  Score=131.14  Aligned_cols=107  Identities=37%  Similarity=0.552  Sum_probs=88.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~   79 (142)
                      ||||+++|..++..+++++|++++|||++++.|+..+..|+..+...    .....|+++|+||+|+.. ..+..+.+..
T Consensus        62 Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~~k~d~~~~~~v~~~~~~~  137 (170)
T d2g6ba1          62 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALMLLGNKVDSAHERVVKREDGEK  137 (170)
T ss_dssp             ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECCSTTSCCCSCHHHHHH
T ss_pred             ECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhc----cCCCceEEEEEeeechhhcccccHHHHHH
Confidence            89999999999999999999999999999999999999888776432    235789999999999887 6788889999


Q ss_pred             HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                      +++.++ .++++|||++|.||+++|.+|++.+.
T Consensus       138 ~~~~~~-~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         138 LAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            999998 46999999999999999999998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.3e-22  Score=134.49  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      ||+|++.|..+++.+++++|++++|||++++.||+.+..|+ ..+....     .++|++|||||+|+..          
T Consensus        56 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-----~~~~iilVgnK~Dl~~~~~~~~~~~~  130 (179)
T d1m7ba_          56 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSN  130 (179)
T ss_dssp             EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHT
T ss_pred             cccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC-----CcceEEEEEecccccccchhhHHHhh
Confidence            78999999999999999999999999999999999877654 4444333     6899999999999742          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~  113 (142)
                         +.++.++...+++.++..+|++|||++|. +++++|+.++..+++
T Consensus       131 ~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         131 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence               45788999999999987789999999998 599999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.9e-22  Score=128.71  Aligned_cols=109  Identities=32%  Similarity=0.506  Sum_probs=97.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||+++|..++..+++++|++++|||++++.|++.+..|+..+...    .....|++++++|.|+..+....+.+..+
T Consensus        57 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~i~~~~k~d~~~~~~~~~~~~~~  132 (166)
T d1g16a_          57 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRVVTADQGEAL  132 (166)
T ss_dssp             CCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTCCSCHHHHHHH
T ss_pred             ECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc----ccCcceeeeecchhhhhhhhhhHHHHHHH
Confidence            89999999999999999999999999999999999999888776432    34678899999999988777889999999


Q ss_pred             HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ++.++ .++++|||++|.||+++|.+|++.+.++
T Consensus       133 ~~~~~-~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         133 AKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHhcC-CeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            99998 5799999999999999999999988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-21  Score=129.47  Aligned_cols=107  Identities=21%  Similarity=0.342  Sum_probs=92.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------   69 (142)
                      |++|++.|..++..+++++|++++|||++++.||+.+.. |...+....     .++|++||+||+|+..          
T Consensus        59 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~  133 (183)
T d1mh1a_          59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE  133 (183)
T ss_dssp             CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTSCEEEEEECHHHHTCHHHHHHHHH
T ss_pred             cccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC-----CCCcEEEEeecccchhhhhhhhhhhh
Confidence            799999999999999999999999999999999999875 555554433     6799999999999742          


Q ss_pred             ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891         70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM  112 (142)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  112 (142)
                         +.....+...+++.++..+|++|||++|.||+++|..|++.++
T Consensus       134 ~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         134 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             ccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence               2356778888899988778999999999999999999999885

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.8e-21  Score=125.45  Aligned_cols=104  Identities=33%  Similarity=0.492  Sum_probs=88.7

Q ss_pred             CCCcchhhhh-hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891          1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE   78 (142)
Q Consensus         1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~   78 (142)
                      |++|++.+.. .++.|++++|++|+|||++++.||+.+..|+..+.+..   ...++|++|||||+|+.. +.++.+++.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pi~lvgnK~Dl~~~~~v~~~~~~  133 (165)
T d1z06a1          57 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAIQVPTDLAQ  133 (165)
T ss_dssp             ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhc---cCCCCeEEEEeccccchhccchhHHHHH
Confidence            4677666654 57889999999999999999999999999999887433   456899999999999976 678999999


Q ss_pred             HHHHHcCCceEEEeeccCC---CCHHHHHHHHH
Q psy10891         79 CFYKEHNFIGWTETSTKEG---LMVNDSMKFLL  108 (142)
Q Consensus        79 ~~~~~~~~~~~~~~Sa~~~---~~i~~l~~~l~  108 (142)
                      .+++.+++ +|++|||+++   .||+++|.+|+
T Consensus       134 ~~~~~~~~-~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         134 KFADTHSM-PLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             HHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             HHHHHCCC-EEEEEecccCCcCcCHHHHHHHhC
Confidence            99999995 6999999974   59999998763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=124.97  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=91.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~   77 (142)
                      ||+|++++.     |++++|++|+|||++++.||+.+..|+..+... +......+|+++|+||.|+..   +.+..+++
T Consensus        58 Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~-~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~  131 (175)
T d2bmja1          58 EEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL-RGEGRGGLALALVGTQDRISASSPRVVGDARA  131 (175)
T ss_dssp             ECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH-CC--CCCCEEEEEEECTTCCSSSCCCSCHHHH
T ss_pred             ecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHH-hhcccCCccEEEEeeecCcchhhhcchhHHHH
Confidence            789988764     789999999999999999999999998887543 223346789999999988754   56778888


Q ss_pred             HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891         78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG  116 (142)
Q Consensus        78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  116 (142)
                      ..++......+|++|||++|.|++++|..+++.++..+.
T Consensus       132 ~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         132 RALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             HHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhh
Confidence            888777655789999999999999999999999987653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.6e-21  Score=128.01  Aligned_cols=106  Identities=30%  Similarity=0.472  Sum_probs=93.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----CCCCHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----RQVDIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~   76 (142)
                      ||+|++++..+++.++.++|++++|||++++.||..+..|+..+...    .....|+++|+||+|+..    +.+..++
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~v~nk~d~~~~~~~~~v~~~~  133 (170)
T d1ek0a_          58 DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKIDMLQEGGERKVAREE  133 (170)
T ss_dssp             EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGSSCCCCSCHHH
T ss_pred             ccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccc----cccccceeeeecccccccccchhhhhHHH
Confidence            79999999999999999999999999999999999999998776432    335789999999999753    5788899


Q ss_pred             HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +..+++..++ +|++|||++|.||+++|..|++.+
T Consensus       134 ~~~~~~~~~~-~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         134 GEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHHh
Confidence            9999999995 799999999999999999987654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.82  E-value=4.2e-20  Score=122.28  Aligned_cols=110  Identities=19%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.|..++..++.++|++++|||++++.++.....|+..+.   ......+.|+++|+||+|+.. .....++...
T Consensus        67 D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~---~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~  142 (182)
T d1moza_          67 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML---QEEELQDAALLVFANKQDQPG-ALSASEVSKE  142 (182)
T ss_dssp             EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHT---TSSTTSSCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHH---HhhccCCcceEEEEEeecccc-ccCHHHHHHH
Confidence            799999999999999999999999999999999998888876654   333456799999999999864 2334443332


Q ss_pred             H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      .     ...+ .++++|||++|+|++++|++|++.+.+++
T Consensus       143 ~~~~~~~~~~-~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         143 LNLVELKDRS-WSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             TTTTTCCSSC-EEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCC-CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            1     1222 46899999999999999999999987753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.81  E-value=1.1e-19  Score=119.43  Aligned_cols=106  Identities=20%  Similarity=0.213  Sum_probs=84.0

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |++|+++|..++..++..+|++++|||+++..++.....|+..+.   ......++|+++|+||+|+... .........
T Consensus        66 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~---~~~~~~~~pillv~nK~Dl~~~-~~~~~~~~~  141 (176)
T d1fzqa_          66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL---EEEKLSCVPVLIFANKQDLLTA-APASEIAEG  141 (176)
T ss_dssp             ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHT---TCGGGTTCCEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             eccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhh---hhhccCCCeEEEEEEecccccc-ccHHHHHHH
Confidence            789999999999999999999999999999999999888887765   2234467999999999999752 223333222


Q ss_pred             HH----HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891         81 YK----EHNFIGWTETSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        81 ~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  110 (142)
                      ..    .....++++|||++|+|++++|++|+++
T Consensus       142 ~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         142 LNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            11    1122568999999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.80  E-value=2.4e-19  Score=116.70  Aligned_cols=109  Identities=18%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.|..++..++.+++++++|||+++..++.....|+....   ......++|+++|+||+|+.+ ..........
T Consensus        52 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~---~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~  127 (165)
T d1ksha_          52 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL---VEERLAGATLLIFANKQDLPG-ALSCNAIQEA  127 (165)
T ss_dssp             EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHH---TCGGGTTCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             ecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhh---hhcccCCCceEEEEecccccc-ccCHHHHHHH
Confidence            899999999999999999999999999999999988777765554   223446899999999999865 2233333332


Q ss_pred             HH--HcC--CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 YK--EHN--FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ~~--~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..  ...  ..++++|||++|.|+.++|++|+.++.+
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         128 LELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             TTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            21  111  2468999999999999999999988754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.79  E-value=2.7e-20  Score=121.42  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=84.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.|...+..++.+++++++|||+++..++.....|+..+.   +....+++|++||+||.|+.. ......+...
T Consensus        53 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~pi~lv~nK~Dl~~-~~~~~~i~~~  128 (164)
T d1zd9a1          53 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPVLVLGNKRDLPG-ALDEKELIEK  128 (164)
T ss_dssp             EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHH---TCGGGTTCCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             eccccccccccccccccccchhhcccccccccccchhhhhhhhhh---hhhcccCCcEEEEEeccccch-hhhHHHHHHH
Confidence            799999999999999999999999999999999999888887775   323456899999999999865 2233333222


Q ss_pred             H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .     ...+ .++++|||++|.|++++|++|++++
T Consensus       129 ~~~~~~~~~~-~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         129 MNLSAIQDRE-ICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHhCC-CEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            1     1222 4689999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.78  E-value=5.3e-19  Score=116.09  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=83.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||||++.+...+..++++++++++|+|+++..++..+..|+....   +.......|+++|+||+|+.. ......+...
T Consensus        62 D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~---~~~~~~~~piiiv~NK~Dl~~-~~~~~~i~~~  137 (173)
T d1e0sa_          62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII---NDREMRDAIILIFANKQDLPD-AMKPHEIQEK  137 (173)
T ss_dssp             EESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHH---TSGGGTTCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             cCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHh---hhcccccceeeeeeecccccc-cccHHHHHHH
Confidence            799999999999999999999999999999999999888876664   222446899999999999864 2233333322


Q ss_pred             H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .     ...+ .++++|||++|+||.++|++|..++
T Consensus       138 ~~~~~~~~~~-~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         138 LGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHhCC-CEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            1     1122 3588999999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.71  E-value=5.7e-18  Score=108.95  Aligned_cols=106  Identities=18%  Similarity=0.252  Sum_probs=84.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC-   79 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-   79 (142)
                      |++|++.+...+..++..+++++++||.+++.++.....|+..+.   .......+|+++++||.|+.... ....+.. 
T Consensus        50 d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~v~~k~d~~~~~-~~~~i~~~  125 (160)
T d1r8sa_          50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML---AEDELRDAVLLVFANKQDLPNAM-NAAEITDK  125 (160)
T ss_dssp             ECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHH---TCGGGTTCEEEEEEECTTSTTCC-CHHHHHHH
T ss_pred             cCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHH---HhhcccCceEEEEeecccccccc-cHHHHHHH
Confidence            789999999999999999999999999999999999888887775   33344678999999999986522 2222221 


Q ss_pred             ----HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         80 ----FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        80 ----~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                          +++..+ .++++|||++|+||+++|++|++.+
T Consensus       126 ~~~~~~~~~~-~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         126 LGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             TTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHhhCC-CEEEEeECCCCCCHHHHHHHHHhcC
Confidence                222334 5699999999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=2.4e-16  Score=103.56  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891          1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV   72 (142)
Q Consensus         1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~   72 (142)
                      ||||+..        +......++++||++++|+|++++.+... ..|...+....     .+.|+++|+||+|+...  
T Consensus        59 DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-----~~~piilv~NK~Dl~~~--  130 (178)
T d1wf3a1          59 DTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-----GKVPILLVGNKLDAAKY--  130 (178)
T ss_dssp             ECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-----TTSCEEEEEECGGGCSS--
T ss_pred             ccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccc-----cchhhhhhhcccccccC--
Confidence            7899643        33334556789999999999998755443 34555553222     57899999999998642  


Q ss_pred             CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ..+....+....+...++++||+++.|+++|+++|++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         131 PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            234455566666766789999999999999999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.58  E-value=1.6e-14  Score=94.24  Aligned_cols=107  Identities=18%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |++|++.+...+..++..++++++++|.++..++.....+.....   ........|+++|+||+|+... ....++...
T Consensus        65 d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~---~~~~~~~~p~iiv~nK~Dl~~~-~~~~~i~~~  140 (177)
T d1zj6a1          65 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML---AHEDLRKAGLLIFANKQDVKEC-MTVAEISQF  140 (177)
T ss_dssp             ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHH---TSGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred             ccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhh---hcccccceEEEEEEEccccccc-CcHHHHHHH
Confidence            578889999999999999999999999999999988766655554   2224468999999999998652 233333333


Q ss_pred             HHH----cCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKE----HNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ...    ....++++|||++|+|++++|++|++++
T Consensus       141 ~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         141 LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            221    1124699999999999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2.6e-15  Score=99.23  Aligned_cols=110  Identities=13%  Similarity=0.037  Sum_probs=78.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH-----------HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK-----------NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~-----------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||+||++|..+|..|+++++++++|+|+++..++.           ....|...+    ........|+++++||+|+..
T Consensus        48 D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~----~~~~~~~~~~~lv~Nk~d~~~  123 (195)
T d1svsa1          48 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC----NNKWFTDTSIILFLNKKDLFE  123 (195)
T ss_dssp             EECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH----TCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHh----cccccCCCCEEEEeccchhhh
Confidence            79999999999999999999999999999887663           223344443    334457899999999998521


Q ss_pred             ----------------CCCCHHHHHH----HHHHc------CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         70 ----------------RQVDINDIEC----FYKEH------NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        70 ----------------~~~~~~~~~~----~~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                                      ..........    .....      +...+++|||+++.||+++|..+...++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         124 EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                            0011111111    11111      113467899999999999999999988765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.55  E-value=2.4e-14  Score=94.11  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=76.7

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~   77 (142)
                      ||||+.+|...+...+..+|++++|+|+++.........|. .+..       .++|+++|+||+|+....   ......
T Consensus        65 d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~-~~~~-------~~~p~iiv~NKiD~~~~~~~~~~~~~~  136 (179)
T d1wb1a4          65 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML-ILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIM  136 (179)
T ss_dssp             CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhccccccccccccccchhhhhhhh-hhhh-------cCCcceeccccccccCHHHHHHHHHHH
Confidence            79999999999999999999999999999865444333332 2211       478999999999986511   011222


Q ss_pred             HHHHHHc-C--CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         78 ECFYKEH-N--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        78 ~~~~~~~-~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                      ..+.+.. +  ..+++++||++|.|+++|++.|.+.+.+.
T Consensus       137 ~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         137 KSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            2233322 2  24689999999999999999999888654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=1.3e-14  Score=98.87  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=74.1

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC--CC-----
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ--VD-----   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~-----   73 (142)
                      ||||+++|...+...+..+|++|+|+|+.+..+......|.....        .++|+|+|+||+|+....  ..     
T Consensus        76 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--------~~~p~iivlNK~D~~~~~~~~~~~~~~  147 (227)
T d1g7sa4          76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--------YRTPFVVAANKIDRIHGWRVHEGRPFM  147 (227)
T ss_dssp             CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--------TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred             cccceecccccchhcccccceEEEEEecccCcccchhHHHHHhhc--------CCCeEEEEEECccCCCchhhhhhHHHH
Confidence            899999999998888999999999999988655444333322221        478999999999986511  00     


Q ss_pred             -------HH-------HH----HHHHHH-------------cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891         74 -------IN-------DI----ECFYKE-------------HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ  114 (142)
Q Consensus        74 -------~~-------~~----~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  114 (142)
                             ..       ..    ..+...             .+..+++.+||.+|.|+++|++.|....-+.
T Consensus       148 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                   00       00    001110             1224688999999999999999988776444

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=88.98  Aligned_cols=109  Identities=16%  Similarity=0.185  Sum_probs=82.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |++|.+.+...+..++...+++++++|+.+..++.....++....   ........|+++|+||.|+.......+.....
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~  131 (169)
T d1upta_          55 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAML---EEEELRKAILVVFANKQDMEQAMTSSEMANSL  131 (169)
T ss_dssp             EECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHH---TCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             eccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhh---hhhccccceEEEEEeeccccccccHHHHHHHH
Confidence            467888899999999999999999999998888877666654443   33344678999999999997632222222222


Q ss_pred             ----HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         81 ----YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        81 ----~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                          +.... .++++|||++|.||+++|.+|++.+.+
T Consensus       132 ~~~~~~~~~-~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         132 GLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TGGGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                22233 579999999999999999999988743

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=3.5e-13  Score=86.04  Aligned_cols=105  Identities=13%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      ||+|...+..+++.++..++++++++|.++..++.....|+....   ......+.|+++++||.|+.. ......+...
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~~~k~d~~~-~~~~~~i~~~  125 (166)
T d2qtvb1          50 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALF---NIAELKDVPFVILGNKIDAPN-AVSEAELRSA  125 (166)
T ss_dssp             ECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHH---TCTTTTTCCEEEEEECTTSSS-CCCHHHHHHH
T ss_pred             eeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhh---hhhccCCceEEEEeccccccc-cCCHHHHHHH
Confidence            578888999999999999999999999999988888777776665   334557899999999999864 3334443332


Q ss_pred             HHH-----------cCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891         81 YKE-----------HNFIGWTETSTKEGLMVNDSMKFLLD  109 (142)
Q Consensus        81 ~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~  109 (142)
                      ...           ....++++|||++|+|++++|++|.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         126 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             HTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             hhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            211           11145899999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=7e-15  Score=97.44  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=80.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-----------hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-----------SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||+||+++..+|..++.+++++++++|.++..           .++....|...+.    .....++|+++++||+|+..
T Consensus        51 d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~----~~~~~~~~~~~v~NK~Dl~~  126 (200)
T d2bcjq2          51 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT----YPWFQNSSVILFLNKKDLLE  126 (200)
T ss_dssp             ECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHH----CGGGSSSEEEEEEECHHHHH
T ss_pred             cccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHh----hhhccCccEEEecchhhhhh
Confidence            79999999999999999999999999998753           3455566766663    33346899999999999733


Q ss_pred             -C----------------CCCHHHHHHH----HHHcC-----CceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         70 -R----------------QVDINDIECF----YKEHN-----FIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        70 -~----------------~~~~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                       +                .........+    +....     ...+++|||+++.||.++|+.+...++++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         127 EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence             1                1112222222    11111     133678999999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.6e-14  Score=93.02  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEE
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTE   91 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   91 (142)
                      ...++.++|++++++|..+..++.....|...+....     .++|+++|+||+|+.......       .+.+..++++
T Consensus        74 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~  141 (161)
T d2gj8a1          74 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-----AKLPITVVRNKADITGETLGM-------SEVNGHALIR  141 (161)
T ss_dssp             HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-----TTCCEEEEEECHHHHCCCCEE-------EEETTEEEEE
T ss_pred             HHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-----cccceeeccchhhhhhhHHHH-------HHhCCCcEEE
Confidence            4566889999999999998877777666655554322     579999999999986522111       1234467999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q psy10891         92 TSTKEGLMVNDSMKFLLDV  110 (142)
Q Consensus        92 ~Sa~~~~~i~~l~~~l~~~  110 (142)
                      +||+++.|+++|+++|++.
T Consensus       142 iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         142 LSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCTTTCTTHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=3.4e-13  Score=88.33  Aligned_cols=106  Identities=11%  Similarity=0.033  Sum_probs=70.3

Q ss_pred             CCCcchhh-------hhhhHhhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQERF-------TWMTRVYYKDAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e~~-------~~~~~~~~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||..+.       ....-..+..++++++++|....  .+......|+.......     .++|+|+|+||+|+..+.
T Consensus        55 DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~D~~~~~  129 (180)
T d1udxa2          55 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-----LRRPSLVALNKVDLLEEE  129 (180)
T ss_dssp             ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-----HHSCEEEEEECCTTSCHH
T ss_pred             CCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccccc-----chhhhhhhhhhhhhhhHH
Confidence            78994321       11233456789999999998654  23344444544332111     368999999999997521


Q ss_pred             CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       ..+.....+...+ .+++.+||++|.|+++|+..|...+..
T Consensus       130 -~~~~~~~~~~~~~-~~~~~iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         130 -AVKALADALAREG-LAVLPVSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             -HHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHhcC-CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence             1233334444445 579999999999999999999888743

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.43  E-value=6e-13  Score=86.72  Aligned_cols=107  Identities=11%  Similarity=0.164  Sum_probs=76.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF   80 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~   80 (142)
                      |+.|+..+...+..++...+++++++|.++...+.....++....   ......++|+++++||.|+.. .+....+...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~K~D~~~-~~~~~~i~~~  138 (186)
T d1f6ba_          63 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLM---TDETIANVPILILGNKIDRPE-AISEERLREM  138 (186)
T ss_dssp             EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHH---TCGGGTTSCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred             cccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhh---cccccCCCceEEEEeccCccc-cCCHHHHHHH
Confidence            467788888889999999999999999999988877665544443   223446899999999999864 3344444443


Q ss_pred             HHHcC----------------CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         81 YKEHN----------------FIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        81 ~~~~~----------------~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .....                ..++++|||++|+|++++|++|++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         139 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             HTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            32111                13588999999999999999998754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.42  E-value=2e-13  Score=90.79  Aligned_cols=105  Identities=13%  Similarity=0.108  Sum_probs=71.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDINDI   77 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~   77 (142)
                      ||||+++|...+...+..+|++++|+|+.+........+-+..+...      .-.++|++.||+|+.+..   .....+
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~------~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII------GQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh------cCccceeeeecccchhhHHHHHHHHHH
Confidence            89999999999988899999999999998763222222222222211      234578899999986611   112223


Q ss_pred             HHHHHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         78 ECFYKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        78 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      ..+......  .|++++||++|.|+++|++.+...+
T Consensus       158 ~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            333333322  4689999999999999999887754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.42  E-value=1.8e-13  Score=91.73  Aligned_cols=104  Identities=11%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH---HH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI---ND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~   76 (142)
                      ||||++.|...+-..+..+|++|+|+|+.+.- .-..-+.|. .+.. .     .-.|+|++.||+|+.......   ..
T Consensus        92 D~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~-~~~~-~-----~i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          92 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGI-I-----GVKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             ECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHH-HHHH-T-----TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             ccchHHHHHhhhhcceeccccccccccccccccchhHHHHHH-HHHH-c-----CCceeeeccccCCCccchHHHHHHHH
Confidence            89999999998888889999999999998753 222222332 2211 0     234889999999997611111   12


Q ss_pred             HHHHHHHcC--CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         77 IECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        77 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      +..+.....  ..|++.+||++|.||++|++.|..++
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            222222222  24689999999999999999888765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=7.6e-15  Score=97.51  Aligned_cols=112  Identities=12%  Similarity=0.111  Sum_probs=71.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhh----------HHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNS----------FKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR   70 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~   70 (142)
                      ||+||+.+...|..++++++++++++|.++..+          +.....|+..+.   +.....++|++|++||+|+.+.
T Consensus        50 D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~piilv~NK~Dl~~~  126 (200)
T d1zcba2          50 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV---NNRVFSNVSIILFLNKTDLLEE  126 (200)
T ss_dssp             EECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH---TCGGGTTSEEEEEEECHHHHHH
T ss_pred             cccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHh---hChhhcCceEEEEeccchhhhh
Confidence            799999999999999999999999999987543          333334444443   3334568999999999997320


Q ss_pred             -----------------CCCHHHHHHH----HHHc------CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         71 -----------------QVDINDIECF----YKEH------NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        71 -----------------~~~~~~~~~~----~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                                       .-..+....+    +...      ..+.++++||+++.+|.++|+.+...+++++
T Consensus       127 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         127 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence                             0111222222    2211      0122567999999999999999998887764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=2.1e-12  Score=83.83  Aligned_cols=95  Identities=12%  Similarity=0.108  Sum_probs=65.8

Q ss_pred             hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEE
Q psy10891         11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWT   90 (142)
Q Consensus        11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~   90 (142)
                      .+..++..+|+++++++.+...+... ..|+..+..       .++|+|+|+||+|+.. .... .........+..+++
T Consensus        73 ~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~-------~~~pviiv~NK~Dl~~-~~~~-~~~~~~~~~~~~~~i  142 (171)
T d1mkya1          73 VTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK-------STVDTILVANKAENLR-EFER-EVKPELYSLGFGEPI  142 (171)
T ss_dssp             HHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH-------HTCCEEEEEESCCSHH-HHHH-HTHHHHGGGSSCSCE
T ss_pred             ccccccccCcEEEEeecccccccccc-ccccccccc-------ccccccccchhhhhhh-hhhh-HHHHHHHhcCCCCeE
Confidence            34555789999999999987654443 344444432       3689999999999854 1111 111122234555688


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891         91 ETSTKEGLMVNDSMKFLLDVLMRQE  115 (142)
Q Consensus        91 ~~Sa~~~~~i~~l~~~l~~~~~~~~  115 (142)
                      ++||++|.|+++++++|...+.+..
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.31  E-value=8.8e-13  Score=87.86  Aligned_cols=104  Identities=11%  Similarity=0.038  Sum_probs=73.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC----CCHHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ----VDIND   76 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----~~~~~   76 (142)
                      ||||++.|...+...+..+|++++|+|+.+...-+..+.|..... .      ...|+|++.||+|+....    ....+
T Consensus        72 DtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~-~------~~~~iIv~iNK~D~~~~~~~~~~i~~~  144 (196)
T d1d2ea3          72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-I------GVEHVVVYVNKADAVQDSEMVELVELE  144 (196)
T ss_dssp             ECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-T------TCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHH-h------cCCcEEEEEecccccccHHHHHHHHHH
Confidence            899999999999888999999999999998654443333433221 1      235789999999986411    11223


Q ss_pred             HHHHHHHcCC----ceEEEeeccCC----------CCHHHHHHHHHHHH
Q psy10891         77 IECFYKEHNF----IGWTETSTKEG----------LMVNDSMKFLLDVL  111 (142)
Q Consensus        77 ~~~~~~~~~~----~~~~~~Sa~~~----------~~i~~l~~~l~~~~  111 (142)
                      +..++..+++    .|++.+||++|          .++.+|++.|..++
T Consensus       145 i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            4445555665    56899999998          47788887776553

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=2.1e-11  Score=79.51  Aligned_cols=93  Identities=13%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHH----------HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTL----------KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY   81 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~   81 (142)
                      ....++.+|++++|+|...+.......          .++..+.       ..++|+|+|+||+|+.+.  .......+.
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~-------~~~~p~iiv~NK~D~~~~--~~~~~~~~~  145 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-------ELDIPTIVAVNKLDKIKN--VQEVINFLA  145 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-------HTTCCEEEEEECGGGCSC--HHHHHHHHH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH-------HcCCCEEEEEeeeehhhh--HHHHHHHHH
Confidence            345567899999999997653322211          1222221       137899999999997641  122223233


Q ss_pred             HHcCC------ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         82 KEHNF------IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        82 ~~~~~------~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ...+.      ..++++||++|.|+++|++.|.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         146 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            33221      237889999999999999999988865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=1.2e-11  Score=79.04  Aligned_cols=83  Identities=10%  Similarity=0.077  Sum_probs=59.4

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST   94 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa   94 (142)
                      .+.++|++++|+|++++.+......+ ..+         ...++++++||.|+.++ ...+.+....  ....+++++||
T Consensus        77 ~~~~ad~ii~v~d~~~~~~~~~~~~~-~~~---------~~~~~i~~~~k~d~~~~-~~~~~~~~~~--~~~~~~~~vSA  143 (160)
T d1xzpa2          77 EIEKADIVLFVLDASSPLDEEDRKIL-ERI---------KNKRYLVVINKVDVVEK-INEEEIKNKL--GTDRHMVKISA  143 (160)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHHHH-HHH---------TTSSEEEEEEECSSCCC-CCHHHHHHHH--TCSTTEEEEEG
T ss_pred             HHHhCCEEEEEEeCCCCcchhhhhhh-hhc---------ccccceeeeeeccccch-hhhHHHHHHh--CCCCcEEEEEC
Confidence            46789999999999988665543322 222         46789999999998763 2333332222  22256999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q psy10891         95 KEGLMVNDSMKFLLDV  110 (142)
Q Consensus        95 ~~~~~i~~l~~~l~~~  110 (142)
                      ++|.|+++|++.|.++
T Consensus       144 ~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         144 LKGEGLEKLEESIYRE  159 (160)
T ss_dssp             GGTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=6e-11  Score=77.55  Aligned_cols=94  Identities=14%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHH----cCC
Q psy10891         12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKE----HNF   86 (142)
Q Consensus        12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~----~~~   86 (142)
                      ...++..+|++++|+|++.+..... ..++..+..       .+.|+|+|+||+|+.. ..............    .++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~-------~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER-------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH-------cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            4455688999999999987644332 233333321       4689999999999865 22233333333222    344


Q ss_pred             ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         87 IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        87 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      .+++++||++|.|+++|++.|...+-.
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            579999999999999999999665543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.18  E-value=5.1e-11  Score=80.56  Aligned_cols=93  Identities=19%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC----CCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ----VDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~----~~~   74 (142)
                      ||||++.|...+......+|++++|+|+.....-+..+.|.....        .+++ +|++.||+|+.+ ..    ...
T Consensus        95 D~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~--------~gv~~iiv~vNK~D~~~~~~~~~~~~~  166 (222)
T d1zunb3          95 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--------LGIKHIVVAINKMDLNGFDERVFESIK  166 (222)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred             eccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHH--------cCCCEEEEEEEccccccccceehhhhH
Confidence            899999999999888999999999999988654444444432221        3665 789999999975 11    112


Q ss_pred             HHHHHHHHHcCC----ceEEEeeccCCCCHH
Q psy10891         75 NDIECFYKEHNF----IGWTETSTKEGLMVN  101 (142)
Q Consensus        75 ~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  101 (142)
                      .++..+++..++    .+++++||.+|.|+.
T Consensus       167 ~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         167 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             HHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            233445555544    357899999999873

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=4.2e-12  Score=85.85  Aligned_cols=112  Identities=15%  Similarity=0.120  Sum_probs=75.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh----------hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN----------SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-   69 (142)
                      |++||+.++..|..++.+++++++|+|.++..          .......++..+.   ......++|++|++||+|+.+ 
T Consensus        53 D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il---~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW---NNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             ECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH---TCGGGSSCEEEEEEECHHHHHH
T ss_pred             ecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHh---cChhhCCCcEEEEechhhhhhh
Confidence            79999999999999999999999999998642          2222222233332   333446899999999999743 


Q ss_pred             C----CCC--------------------------HHHHHH-----HHHHc-------CCceEEEeeccCCCCHHHHHHHH
Q psy10891         70 R----QVD--------------------------INDIEC-----FYKEH-------NFIGWTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        70 ~----~~~--------------------------~~~~~~-----~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~l  107 (142)
                      +    ...                          ......     +....       ..+.+.++||.++.+|..+|+.+
T Consensus       130 k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v  209 (221)
T d1azta2         130 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC  209 (221)
T ss_dssp             HHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTT
T ss_pred             hhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHH
Confidence            1    010                          111111     11111       11224579999999999999999


Q ss_pred             HHHHHHHh
Q psy10891        108 LDVLMRQE  115 (142)
Q Consensus       108 ~~~~~~~~  115 (142)
                      ...|++..
T Consensus       210 ~d~I~~~~  217 (221)
T d1azta2         210 RDIIQRMH  217 (221)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.13  E-value=2.2e-10  Score=75.50  Aligned_cols=90  Identities=10%  Similarity=0.049  Sum_probs=61.4

Q ss_pred             hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc---CCceEE
Q psy10891         14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH---NFIGWT   90 (142)
Q Consensus        14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~   90 (142)
                      ..+..+|++++|+|++.+..-.. ..++..+..       .++|+++|+||+|+.......+....+.+.+   ...+++
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~-------~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             ccccchhhhhhhhhccccccccc-ccccccccc-------ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEE
Confidence            34457899999999987644322 244444431       3689999999999865322233333333332   334689


Q ss_pred             EeeccCCCCHHHHHHHHHHHH
Q psy10891         91 ETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        91 ~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .+||++|.|+++++.+|.+.+
T Consensus       173 ~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998876

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=4.4e-11  Score=79.91  Aligned_cols=88  Identities=10%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC----CCHH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ----VDIN   75 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~----~~~~   75 (142)
                      ||||+++|...+-..++.+|++|+|+|+.+....+..+.|.....        .++| +|++.||+|+.+..    ....
T Consensus        73 DtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~--------~gi~~iiv~iNK~D~~~~~~~~~~~~~  144 (204)
T d2c78a3          73 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--------VGVPYIVVFMNKVDMVDDPELLDLVEM  144 (204)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--------TTCCCEEEEEECGGGCCCHHHHHHHHH
T ss_pred             eCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--------cCCCeEEEEEEecccCCCHHHHHHHHH
Confidence            899999999999889999999999999998776666555644432        4676 67789999986411    1123


Q ss_pred             HHHHHHHHcCC----ceEEEeeccC
Q psy10891         76 DIECFYKEHNF----IGWTETSTKE   96 (142)
Q Consensus        76 ~~~~~~~~~~~----~~~~~~Sa~~   96 (142)
                      .+..+...+++    .+++..|+..
T Consensus       145 ~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         145 EVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHHhcCCCcccceeeeeechh
Confidence            34444454443    4578888754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=6.8e-10  Score=73.69  Aligned_cols=68  Identities=13%  Similarity=0.175  Sum_probs=49.5

Q ss_pred             CCCcchhhh-hhhHhhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSF-KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||+|++++. .++..++..++++++|+|+++..++ .....|+..+.... ......+|+++|+||+|+..
T Consensus        53 d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~-~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          53 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS-MALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH-HTSTTCCEEEEEEECTTSTT
T ss_pred             eccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhH-HHhhcCCcEEEEEECcccCC
Confidence            789999986 5678889999999999999997654 44444443332111 11235689999999999975

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=2.3e-10  Score=74.68  Aligned_cols=107  Identities=11%  Similarity=-0.005  Sum_probs=65.6

Q ss_pred             CCCcchhhhh----hh---HhhhccCCEEEEEEeCCChhhHHHHH--HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891          1 MTEGQERFTW----MT---RVYYKDAHGCIIMFDLTNQNSFKNTL--KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ   71 (142)
Q Consensus         1 Dt~G~e~~~~----~~---~~~~~~ad~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~   71 (142)
                      ||||..+...    +.   -..+..++.++++++...........  .+....... ......++|+++|+||+|+.+  
T Consensus        55 DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kp~ivv~NK~Dl~~--  131 (185)
T d1lnza2          55 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE-YNLRLTERPQIIVANKMDMPE--  131 (185)
T ss_dssp             EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH-SCSSTTTSCBCBEEECTTSTT--
T ss_pred             cCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccch-hhhhccCCcchhhccccchHh--
Confidence            7888643222    11   22346789998888776543222111  111111111 222335789999999999865  


Q ss_pred             CCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 VDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                       ..+....+...++ ..+++.+||++|.|+++|+..|.+.+
T Consensus       132 -~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         132 -AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             -HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence             1233444555442 25689999999999999999998877

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.90  E-value=1.8e-09  Score=73.86  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFK---NTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD   73 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~   73 (142)
                      ||||+..|...+.....-+|++++|+|+....   ++.   ....-+..+..       .++| ++++.||+|+......
T Consensus       108 DtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-------~~i~~iiv~iNKmD~~~~~~~  180 (245)
T d1r5ba3         108 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-------QGINHLVVVINKMDEPSVQWS  180 (245)
T ss_dssp             CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-------TTCSSEEEEEECTTSTTCSSC
T ss_pred             cccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-------cCCCeEEEEEEcCCCCccchh
Confidence            89999999999988899999999999998742   110   11111111110       2455 7899999998642223


Q ss_pred             HHHHHH-------HHHHc-CC-----ceEEEeeccCCCCHHHHHH
Q psy10891         74 INDIEC-------FYKEH-NF-----IGWTETSTKEGLMVNDSMK  105 (142)
Q Consensus        74 ~~~~~~-------~~~~~-~~-----~~~~~~Sa~~~~~i~~l~~  105 (142)
                      ......       +.... +.     .+++++||++|.||.++++
T Consensus       181 e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         181 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            322222       22222 21     3689999999999976543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=2e-09  Score=69.55  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEee
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETS   93 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S   93 (142)
                      +...+++++++.|..+.....  ..+...+.       ....|+++|+||+|... +.........+...++..+++++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~-------~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vS  152 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDD--EMVLNKLR-------EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  152 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHH--HHHHHHHH-------SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             chhhcceeEEEEecCccchhH--HHHHHHhh-------hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEe
Confidence            345778888999887643222  23333332       14678999999999866 222334455566677777899999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q psy10891         94 TKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        94 a~~~~~i~~l~~~l~~~~  111 (142)
                      |++|.|+++|++.|.+.+
T Consensus       153 A~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         153 AETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTTHHHHHHHHHTTC
T ss_pred             CcCCCCHHHHHHHHHHhC
Confidence            999999999999987765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=6.3e-09  Score=72.13  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=50.6

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL   67 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~   67 (142)
                      ||||+..|...+...++-+|++|+|+|..+.........|-....        .++|.|+++||.|.
T Consensus        77 DtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~--------~~lP~i~fINKmDr  135 (276)
T d2bv3a2          77 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------YKVPRIAFANKMDK  135 (276)
T ss_dssp             CCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHT--------TTCCEEEEEECTTS
T ss_pred             cCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHH--------cCCCEEEEEecccc
Confidence            999999999999999999999999999998876666566644332        58999999999997

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.8e-09  Score=73.52  Aligned_cols=94  Identities=12%  Similarity=0.035  Sum_probs=63.8

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhh-------HHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC-
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNS-------FKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ-   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-   71 (142)
                      ||||+..|...+....+-+|++|+|+|+....-       .+..+.|+....        -++| +|++.||+|+.+.. 
T Consensus        90 DtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~--------~gv~~iiv~iNKmD~~~~d~  161 (239)
T d1f60a3          90 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--------LGVRQLIVAVNKMDSVKWDE  161 (239)
T ss_dssp             ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--------TTCCEEEEEEECGGGGTTCH
T ss_pred             ECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH--------cCCCeEEEEEECCCCCCCCH
Confidence            899999999999999999999999999986421       122233432221        3676 78899999986511 


Q ss_pred             ----CCHHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891         72 ----VDINDIECFYKEHNF----IGWTETSTKEGLMVND  102 (142)
Q Consensus        72 ----~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  102 (142)
                          .....+..++...++    .+++.+|+..|.|+-+
T Consensus       162 ~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         162 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence                112334445555554    4578999999988643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.85  E-value=1.5e-08  Score=69.92  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP   68 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~   68 (142)
                      ||||+.+|...+...++-+|++|+|+|+.+.........|.....        .++|.+++.||+|..
T Consensus        73 DtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~--------~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          73 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--------LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEECGGGC
T ss_pred             ccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh--------ccccccccccccccc
Confidence            899999999999999999999999999998766666566644432        579999999999963

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.77  E-value=1.5e-08  Score=68.18  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK------NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI   74 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~   74 (142)
                      ||||++.|...+....+-+|++|+|+|+.+...-.      ...+-+.... .     ..-.++|++.||.|+.......
T Consensus        87 DtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~-----~~~~~iIv~iNK~D~~~~~~~~  160 (224)
T d1jnya3          87 DAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-T-----MGLDQLIVAVNKMDLTEPPYDE  160 (224)
T ss_dssp             CCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-H-----TTCTTCEEEEECGGGSSSTTCH
T ss_pred             eCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-H-----hCCCceEEEEEcccCCCccccH
Confidence            89999999999999999999999999998753111      1111111111 0     0234688899999986422222


Q ss_pred             H-------HHHHHHHHcCC----ceEEEeeccCCCCHH
Q psy10891         75 N-------DIECFYKEHNF----IGWTETSTKEGLMVN  101 (142)
Q Consensus        75 ~-------~~~~~~~~~~~----~~~~~~Sa~~~~~i~  101 (142)
                      .       .+..+...++.    .+++.+||.+|.|+.
T Consensus       161 ~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         161 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            2       23334444443    357899999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=3.4e-08  Score=66.36  Aligned_cols=87  Identities=15%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             HhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc-CCceEE
Q psy10891         13 RVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH-NFIGWT   90 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~   90 (142)
                      +-.+++.|.+++|+.+..|. +...++.|+.....       .+++.+||.||+|+.+.. ..+....+...+ ...+++
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~-------~~i~pvIvlnK~DL~~~~-~~~~~~~~~~~~~~~~~v~   76 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-------NELETVMVINKMDLYDED-DLRKVRELEEIYSGLYPIV   76 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHTTTSCEE
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEeCcccCCHH-HHHHHHHhhcccccceeEE
Confidence            34568999999999988764 66667777766532       589999999999996521 122233333332 335689


Q ss_pred             EeeccCCCCHHHHHHHH
Q psy10891         91 ETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        91 ~~Sa~~~~~i~~l~~~l  107 (142)
                      .+|++++.|++++...+
T Consensus        77 ~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          77 KTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             ECCTTTCTTHHHHHHHH
T ss_pred             EeccccchhHhhHHHHh
Confidence            99999999999988766

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=1.1e-07  Score=65.69  Aligned_cols=89  Identities=16%  Similarity=0.085  Sum_probs=64.0

Q ss_pred             hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---HcCC
Q psy10891         10 WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYK---EHNF   86 (142)
Q Consensus        10 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~---~~~~   86 (142)
                      ......+..+|+|++|+|+.+|.+...  ..+..+.        .+.|+|+|.||+|+.+    .+....|.+   ..+ 
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~--------~~Kp~IlVlNK~DLv~----~~~~~~w~~~f~~~~-   71 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL--------KNKPRIMLLNKADKAD----AAVTQQWKEHFENQG-   71 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC--------SSSCEEEEEECGGGSC----HHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH--------cCCCeEEEEECccCCc----hHHHHHHHHHHHhcC-
Confidence            345667899999999999999977654  2333332        3689999999999965    333344433   334 


Q ss_pred             ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         87 IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        87 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ...+.+|+.++.++..+...+...+.+
T Consensus        72 ~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          72 IRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             CccceeecccCCCccccchhhhhhhhh
Confidence            458899999999988887777665554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=4.3e-08  Score=64.48  Aligned_cols=69  Identities=22%  Similarity=0.216  Sum_probs=48.9

Q ss_pred             CCCcchhhhhhhHhhh----ccCCEEEEEEeCCC-hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYY----KDAHGCIIMFDLTN-QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~----~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||++++...+..++    ..++.+++++|..+ ..++.....|+..+....+.....++|+++|+||+|+..
T Consensus        52 D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          52 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            8999999887766554    45588888888764 556666666654443222223456899999999999875

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=3.1e-08  Score=70.54  Aligned_cols=61  Identities=13%  Similarity=0.202  Sum_probs=52.4

Q ss_pred             CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ||||+..|.......++-+|++++|+|+...........|.....        .++|+++++||+|...
T Consensus       102 DtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~--------~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2         102 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRAL  162 (341)
T ss_dssp             CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHHH
T ss_pred             cCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH--------cCCCeEEEEECccccc
Confidence            999999999999999999999999999999877776666655553        5899999999999643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.45  E-value=2.2e-08  Score=67.48  Aligned_cols=87  Identities=17%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             HhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCCce
Q psy10891         13 RVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNFIG   88 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~~   88 (142)
                      +-.+.+.|.+++|+++.+|. +...++.++....       ..+++.+||.||+|+.......+.+..+   ....| .+
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~-------~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~   76 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-------ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YD   76 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-------TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHH-------HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhcc-cc
Confidence            33568999999999988764 6777778876653       2578999999999997532223333333   34456 56


Q ss_pred             EEEeeccCCCCHHHHHHHH
Q psy10891         89 WTETSTKEGLMVNDSMKFL  107 (142)
Q Consensus        89 ~~~~Sa~~~~~i~~l~~~l  107 (142)
                      ++.+|+.++.|++++...+
T Consensus        77 v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          77 VYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             EEECCHHHHTTCTTTGGGG
T ss_pred             ceeeecCChhHHHHHHHhh
Confidence            9999999999988877654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.43  E-value=1.2e-06  Score=58.49  Aligned_cols=105  Identities=15%  Similarity=0.033  Sum_probs=61.6

Q ss_pred             CCCcchhhhhhhHh---hh--ccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-C
Q psy10891          1 MTEGQERFTWMTRV---YY--KDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-Q   71 (142)
Q Consensus         1 Dt~G~e~~~~~~~~---~~--~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~   71 (142)
                      ||||+..+......   ..  ...+.+++++|...   +.++.........+...      -..|.++|.||+|+... .
T Consensus       101 d~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~------~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1         101 DTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR------LGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             ECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH------HTSCEEEEECCGGGCCHHH
T ss_pred             ccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH------hCCCceeeeeccccccHHH
Confidence            68898776543222   12  24678999999753   33332221111111111      26899999999998651 0


Q ss_pred             C--------CHHHHH------------------H-HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891         72 V--------DINDIE------------------C-FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        72 ~--------~~~~~~------------------~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  111 (142)
                      .        ......                  . .....+..+++.+||++|+|+++|+..|.++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            0        000000                  0 01123446799999999999999999988764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=5.1e-07  Score=57.90  Aligned_cols=86  Identities=13%  Similarity=0.032  Sum_probs=52.3

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHHHHHHHHHc-CCceEEEee
Q psy10891         18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DINDIECFYKEH-NFIGWTETS   93 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~-~~~~~~~~S   93 (142)
                      .++.++.+.+......... ..++..+..       ...++++++||+|+.....   ..+.+......+ +..+++.+|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vS  169 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLD-QQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS  169 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHH-HHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred             heeEEEEeecccccchhHH-HHHHHHhhh-------ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            4455566666655433333 234444321       4678999999999876111   112222222222 335689999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q psy10891         94 TKEGLMVNDSMKFLLDVL  111 (142)
Q Consensus        94 a~~~~~i~~l~~~l~~~~  111 (142)
                      |++|.|+++|+..|...+
T Consensus       170 A~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         170 SLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999886653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=4.1e-05  Score=53.81  Aligned_cols=87  Identities=10%  Similarity=0.027  Sum_probs=50.6

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHHHHHHHHHHcC-----C
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDINDIECFYKEHN-----F   86 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~~~-----~   86 (142)
                      +...+|.+++|.++...........   .+.         .++-++|+||+|.....   ............+.     +
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~---------e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w  231 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKK---GLM---------EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEW  231 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCH---HHH---------HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTB
T ss_pred             hhhccceEEEEecCCCchhhhhhch---hhh---------ccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCC
Confidence            4567999999987755433333222   232         23448899999986511   11111222221111     1


Q ss_pred             -ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         87 -IGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        87 -~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                       .|++.|||.+|.|++++++.|..+.-.
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence             368999999999999999999876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.59  E-value=7e-05  Score=52.51  Aligned_cols=86  Identities=10%  Similarity=-0.023  Sum_probs=51.5

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCCHHHHHHHHHHc---------C
Q psy10891         16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVDINDIECFYKEH---------N   85 (142)
Q Consensus        16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~---------~   85 (142)
                      ...+|..++|...........   ....+.         .+.-++|+||+|+... .........+....         .
T Consensus       162 ~~~~D~~v~v~~p~~GD~iQ~---~k~gil---------E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  229 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGDELQG---IKKGIF---------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATW  229 (323)
T ss_dssp             HTTSSEEEEEECSCC---------CCTTHH---------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTB
T ss_pred             hcccceEEEEeeccchhhhhh---hhhhHh---------hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCC
Confidence            456899999998876543332   222221         2445999999998651 11111111122211         1


Q ss_pred             CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891         86 FIGWTETSTKEGLMVNDSMKFLLDVLMR  113 (142)
Q Consensus        86 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  113 (142)
                      ..|++.+||+++.|++++++.|..+.-.
T Consensus       230 ~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         230 TPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            1469999999999999999999877654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00016  Score=52.11  Aligned_cols=103  Identities=14%  Similarity=0.049  Sum_probs=59.3

Q ss_pred             CCCcchhhhhhh-----HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC------
Q psy10891          1 MTEGQERFTWMT-----RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH------   69 (142)
Q Consensus         1 Dt~G~e~~~~~~-----~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------   69 (142)
                      ||||........     ...+..+|+++++.|..-.  -.+. .++..+..       .++|+++|.||+|...      
T Consensus       113 DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~--~~d~-~l~~~l~~-------~~k~~~~V~nK~D~~~~~~~~~  182 (400)
T d1tq4a_         113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK--KNDI-DIAKAISM-------MKKEFYFVRTKVDSDITNEADG  182 (400)
T ss_dssp             ECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCC--HHHH-HHHHHHHH-------TTCEEEEEECCHHHHHHHHHTT
T ss_pred             eCCCcccccccHHHHHHHhhhhcceEEEEecCCCCC--HHHH-HHHHHHHH-------cCCCEEEEEeCcccccchhhhc
Confidence            899965443322     3335678999998875432  2222 33344431       3789999999999521      


Q ss_pred             --CCCCHHH----H----HHHHHHcCC--ceEEEeeccCCC--CHHHHHHHHHHHHHH
Q psy10891         70 --RQVDIND----I----ECFYKEHNF--IGWTETSTKEGL--MVNDSMKFLLDVLMR  113 (142)
Q Consensus        70 --~~~~~~~----~----~~~~~~~~~--~~~~~~Sa~~~~--~i~~l~~~l~~~~~~  113 (142)
                        .....+.    +    .......+.  .+++.+|..+..  ++..|.+.+.+.+.+
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence              1111111    1    122233332  347888876543  788888888777654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.0075  Score=40.94  Aligned_cols=53  Identities=17%  Similarity=0.095  Sum_probs=35.9

Q ss_pred             hhhHhhhccCC-EEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         10 WMTRVYYKDAH-GCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        10 ~~~~~~~~~ad-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      .++..|+...+ ++++|.+.....+-.....|...+       .....++++|.||+|...
T Consensus       153 ~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~-------~~~~~r~i~Vltk~D~~~  206 (299)
T d2akab1         153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-------DPQGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH-------CTTCSSEEEEEECGGGSC
T ss_pred             HHHHHHhcCccceeeeecccccchhhhHHHHHHHHh-------CcCCCceeeEEecccccc
Confidence            45677777776 455667666555545555666666       234568999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.89  E-value=0.0072  Score=41.23  Aligned_cols=54  Identities=20%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             hhhhHhhhccCCEEEEEE-eCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891          9 TWMTRVYYKDAHGCIIMF-DLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus         9 ~~~~~~~~~~ad~ii~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ..++..|+..++.+++++ +......-.....+...+       .....++++|.||+|...
T Consensus       158 ~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-------~~~~~r~i~Vitk~D~~~  212 (306)
T d1jwyb_         158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-------DPEGKRTIGVITKLDLMD  212 (306)
T ss_dssp             HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-------CSSCSSEEEEEECTTSSC
T ss_pred             HHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-------CcCCCeEEEEEecccccc
Confidence            346788899999866665 444332333344555555       234568999999999865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.93  E-value=0.11  Score=34.30  Aligned_cols=50  Identities=8%  Similarity=-0.047  Sum_probs=27.8

Q ss_pred             ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891         17 KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH   69 (142)
Q Consensus        17 ~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~   69 (142)
                      ...++++||++++.. .+..+. ..+..+...+.  ..--.++|+|.||+|...
T Consensus       111 ~~~~~il~v~~~~~~r~~~~~~-~~l~~l~~~fg--~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         111 KTIDVLLYVDRLDAYRVDNLDK-LVAKAITDSFG--KGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             CEECEEEEEEESSCCCCCHHHH-HHHHHHHHHHC--GGGGGGEEEEEECCSCCC
T ss_pred             CCCCeEEEEEECCCCCCCHHHH-HHHHHHHHHcc--hhhhhCEEEEEECcccCC
Confidence            467899999888653 122221 12222221110  111257899999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=88.90  E-value=0.72  Score=29.41  Aligned_cols=69  Identities=10%  Similarity=0.069  Sum_probs=39.6

Q ss_pred             cCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891         18 DAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE   96 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   96 (142)
                      ..+-+++|+|++... ....+...+..+          + +-=++.||.|...   ..-.+-.++...+ .|+.+++  +
T Consensus       124 ~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI~TKlDet~---~~G~~l~~~~~~~-~Pi~~i~--~  186 (207)
T d1okkd2         124 EPKEVWLVLDAVTGQNGLEQAKKFHEAV----------G-LTGVIVTKLDGTA---KGGVLIPIVRTLK-VPIKFVG--V  186 (207)
T ss_dssp             CCSEEEEEEETTBCTHHHHHHHHHHHHH----------C-CSEEEEECTTSSC---CCTTHHHHHHHHC-CCEEEEE--C
T ss_pred             CCceEEEEeecccCchHHHHHHHhhhcc----------C-CceEEEeccCCCC---CccHHHHHHHHHC-CCEEEEe--C
Confidence            457788888887543 444444444444          2 2245899999643   2223334566666 5676666  4


Q ss_pred             CCCHHHH
Q psy10891         97 GLMVNDS  103 (142)
Q Consensus        97 ~~~i~~l  103 (142)
                      |++.+++
T Consensus       187 Gq~p~Dl  193 (207)
T d1okkd2         187 GEGPDDL  193 (207)
T ss_dssp             SSSTTCE
T ss_pred             CCChHhC
Confidence            6555444

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.60  E-value=1.7  Score=27.20  Aligned_cols=58  Identities=9%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCCCCCHHHHH
Q psy10891         13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHRQVDINDIE   78 (142)
Q Consensus        13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~~~~~   78 (142)
                      ...+..+|.++++...+ ..+.......+..+.+       .++|++ +|.|+.+.....+.....+
T Consensus       128 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~-------~~~~~~giv~N~~~~~~~~~~~~~~~  186 (237)
T d1g3qa_         128 MSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK-------AGLAILGFVLNRYGRSDRDIPPEAAE  186 (237)
T ss_dssp             HHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH-------TTCEEEEEEEEEETSCTTCCCHHHHH
T ss_pred             hhhhhhhhccccccccc-ceecchhhHHHHHHhh-------hhhhhhhhhhcccccccchhhhHHHH
Confidence            34456799999999764 5566666666655532       356765 7899998655444444443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.69  E-value=0.98  Score=28.88  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=39.0

Q ss_pred             CCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891         19 AHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG   97 (142)
Q Consensus        19 ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   97 (142)
                      .+-+++|.|.+... ....+...+..+          + +-=++.||.|-..   ..-.+-.++...+ .|+.+++  +|
T Consensus       128 p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lIlTKlDe~~---~~G~~l~~~~~~~-~Pi~~i~--~G  190 (211)
T d2qy9a2         128 PHEVMLTIDASTGQNAVSQAKLFHEAV----------G-LTGITLTKLDGTA---KGGVIFSVADQFG-IPIRYIG--VG  190 (211)
T ss_dssp             CSEEEEEEEGGGTHHHHHHHHHHHHHS----------C-CCEEEEECCTTCT---TTTHHHHHHHHHC-CCEEEEE--CS
T ss_pred             cceeeeehhcccCcchHHHHhhhhhcc----------C-CceEEEeecCCCC---CccHHHHHHHHHC-CCEEEEe--CC
Confidence            46788889887542 333333332222          2 3356799999643   2233444566667 5677777  77


Q ss_pred             CCHHH
Q psy10891         98 LMVND  102 (142)
Q Consensus        98 ~~i~~  102 (142)
                      +++++
T Consensus       191 q~v~D  195 (211)
T d2qy9a2         191 ERIED  195 (211)
T ss_dssp             SSGGG
T ss_pred             CCccc
Confidence            77754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.03  E-value=1.2  Score=28.51  Aligned_cols=69  Identities=14%  Similarity=0.041  Sum_probs=38.6

Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891         19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGL   98 (142)
Q Consensus        19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~   98 (142)
                      .+-+++|+|.+...  ..+.........       -+ +-=++.||.|...   ..-.+-.++...+ .|+.+++  +|+
T Consensus       130 p~~~~LVl~a~~~~--~~~~~~~~~~~~-------~~-~~~lI~TKlDe~~---~~G~~l~~~~~~~-~Pi~~i~--~Gq  193 (213)
T d1vmaa2         130 PHETLLVIDATTGQ--NGLVQAKIFKEA-------VN-VTGIILTKLDGTA---KGGITLAIARELG-IPIKFIG--VGE  193 (213)
T ss_dssp             CSEEEEEEEGGGHH--HHHHHHHHHHHH-------SC-CCEEEEECGGGCS---CTTHHHHHHHHHC-CCEEEEE--CSS
T ss_pred             cceeEEeeccccCc--chhhhhhhhccc-------cC-CceEEEecccCCC---cccHHHHHHHHHC-CCEEEEe--CCC
Confidence            46788999986542  222223222210       12 3356899999642   2233444566666 5677777  677


Q ss_pred             CHHHH
Q psy10891         99 MVNDS  103 (142)
Q Consensus        99 ~i~~l  103 (142)
                      +++++
T Consensus       194 ~v~Dl  198 (213)
T d1vmaa2         194 KAEDL  198 (213)
T ss_dssp             SGGGE
T ss_pred             CcccC
Confidence            77553

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=81.93  E-value=1.7  Score=26.44  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=28.5

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891         15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK   64 (142)
Q Consensus        15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK   64 (142)
                      .+.+||++|.++|...+.+....+--+...         .++|+|++..-
T Consensus        78 ~i~~sD~vIA~ldg~~~D~GTa~EiG~A~a---------~gKPvi~~~~d  118 (167)
T d1s2da_          78 GISNATCGVFLYDMDQLDDGSAFEIGFMRA---------MHKPVILVPFT  118 (167)
T ss_dssp             HHHHCSEEEEEEESSSCCHHHHHHHHHHHH---------TTCCEEEEEEC
T ss_pred             HHHHCCEEEEEeCCCCCCccHHHHHHHHHH---------CCCeEEEEecC
Confidence            456899999999988766666554333333         48999887653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=4.4  Score=25.59  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=39.9

Q ss_pred             cCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC-CceEEEeecc
Q psy10891         18 DAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN-FIGWTETSTK   95 (142)
Q Consensus        18 ~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~   95 (142)
                      ..+++|.|+|+......-.. ..+...+.          .--++|.||+|+..   ..+.+....+... ..++++++ .
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~----------~AD~ivlNK~Dl~~---~~~~~~~~l~~lNP~a~Ii~~~-~  186 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVG----------YADRILLTKTDVAG---EAEKLHERLARINARAPVYTVT-H  186 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHH----------TCSEEEEECTTTCS---CTHHHHHHHHHHCSSSCEEECC-S
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHH----------hCCccccccccccc---HHHHHHHHHHHHhCCCeEEEee-C
Confidence            46889999999876432221 12223331          23378899999864   1344555555544 23455433 2


Q ss_pred             CCCCHHHHH
Q psy10891         96 EGLMVNDSM  104 (142)
Q Consensus        96 ~~~~i~~l~  104 (142)
                      -.-.+..+|
T Consensus       187 g~v~~~~ll  195 (222)
T d1nija1         187 GDIDLGLLF  195 (222)
T ss_dssp             SCCCGGGGS
T ss_pred             CccCHHHhh
Confidence            233555554