Psyllid ID: psy10894

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVID
cccHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEEEccEEEcHHHHHHHHHcccccccccccccccccEEEEEcccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccEEEEEEEEcccccccccHHHHHHHHHHHcccccccccccccccEEEEcccccEEEcccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHEEEEEccccccEEEEEEccccccccHHHHHHHHHHcccccHHHHHHHHccccccHHHccccccccccccccccccccccc
ccHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEccEEEcHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHccccccccHHHccccccccEEEEcccccHHHccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccEEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHcccccHHHHccccEEEEccccEEEEEcccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHcEEEEEHHHcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHccccccccccccccccEEcc
MCDQISDAILDAhlrqdpdakvACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKhigyddsskgfdyktcsvmlcldeqspdiaagvhinrdrddvgagdqglmfgyatdeteecmPLTVVLAHKLNQKVADLRRSgefwwarpdtktqvtceycfargacvprrvHTVVVSVQHSEKIGLKELRAEVMSKVIKAVipadyldentivhinpcgnfilggpqvdagltgRKIIVdtyggwgahgggafsgkdftkvDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGvaepisitlfdygtssrsHKELLSIVQRnfdlrpgkivkdlnlrnpiyqqtstyghfgrdifpwevpkplvid
MCDQISDAILdahlrqdpdaKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIkhigyddsskgfdYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSgefwwarpdtktQVTCEYCFARGACVPRRVHTVVVSvqhsekiglkelRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVqrnfdlrpgkivkdlnlrnpIYQQtstyghfgrdiFPWEVPKPLVID
MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACvprrvhtvvvsvqhsEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYggwgahgggafsgKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVID
*********L*AHL***PDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPL***
MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLV**
MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVID
MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVI*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
P40320408 S-adenosylmethionine synt yes N/A 1.0 0.892 0.815 1e-170
Q3THS6395 S-adenosylmethionine synt yes N/A 0.991 0.913 0.745 1e-158
Q5R5H1395 S-adenosylmethionine synt yes N/A 0.991 0.913 0.745 1e-158
Q4R924395 S-adenosylmethionine synt N/A N/A 0.991 0.913 0.745 1e-158
P31153395 S-adenosylmethionine synt yes N/A 0.991 0.913 0.745 1e-158
P18298395 S-adenosylmethionine synt yes N/A 0.991 0.913 0.739 1e-158
Q00266395 S-adenosylmethionine synt no N/A 0.997 0.918 0.724 1e-155
Q91X83396 S-adenosylmethionine synt no N/A 0.997 0.916 0.727 1e-155
Q2KJC6396 S-adenosylmethionine synt no N/A 0.997 0.916 0.724 1e-155
P50306404 Probable S-adenosylmethio yes N/A 0.997 0.898 0.735 1e-154
>sp|P40320|METK_DROME S-adenosylmethionine synthase OS=Drosophila melanogaster GN=Sam-S PE=2 SV=2 Back     alignment and function desciption
 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/364 (81%), Positives = 335/364 (92%)

Query: 1   MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
           MCDQISDAILDAHL+QDP+AKVACETV KTGM+LLCGEITSKAVVDYQKV RET++HIGY
Sbjct: 44  MCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGY 103

Query: 61  DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
           DDSSKGFD+KTC+V+L LD+QSP+IAAGVH+NR  +++GAGDQG+MFGYATDETEECMPL
Sbjct: 104 DDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMFGYATDETEECMPL 163

Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
           TVVLAHKLN+K+A+LRRS  FWWARPD+KTQVTCEY F +G+ VP+RVHT+VVS+QHSEK
Sbjct: 164 TVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEK 223

Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
           I L+ LR+EVM KV+K VIPA Y+D NTIVHINPCG F++GGP  DAGLTGRKIIVDTYG
Sbjct: 224 ISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYG 283

Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
           GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLC+RCLVQVSYAIG+AEP+SIT+
Sbjct: 284 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITV 343

Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
           FDYGTS +S KELL I++RNFDLRPGKIVKDLNLR PIYQ+TSTYGHFGR  F WE  KP
Sbjct: 344 FDYGTSHKSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEEAKP 403

Query: 361 LVID 364
           L ID
Sbjct: 404 LEID 407
Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q3THS6|METK2_MOUSE S-adenosylmethionine synthase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2 Back     alignment and function description
>sp|Q5R5H1|METK2_PONAB S-adenosylmethionine synthase isoform type-2 OS=Pongo abelii GN=MAT2A PE=2 SV=1 Back     alignment and function description
>sp|Q4R924|METK2_MACFA S-adenosylmethionine synthase isoform type-2 OS=Macaca fascicularis GN=MAT2A PE=2 SV=1 Back     alignment and function description
>sp|P31153|METK2_HUMAN S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1 Back     alignment and function description
>sp|P18298|METK2_RAT S-adenosylmethionine synthase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=1 SV=1 Back     alignment and function description
>sp|Q00266|METK1_HUMAN S-adenosylmethionine synthase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2 Back     alignment and function description
>sp|Q91X83|METK1_MOUSE S-adenosylmethionine synthase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1 Back     alignment and function description
>sp|Q2KJC6|METK1_BOVIN S-adenosylmethionine synthase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1 Back     alignment and function description
>sp|P50306|METK4_CAEEL Probable S-adenosylmethionine synthase 4 OS=Caenorhabditis elegans GN=sams-4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
114052392404 S-adenosylmethionine synthetase [Bombyx 1.0 0.900 0.843 1e-178
193631865409 PREDICTED: s-adenosylmethionine synthase 0.994 0.885 0.848 1e-178
357603757398 S-adenosylmethionine synthetase [Danaus 1.0 0.914 0.837 1e-178
328719278409 PREDICTED: s-adenosylmethionine synthase 0.994 0.885 0.831 1e-176
91091770404 PREDICTED: similar to S-adenosylmethioni 1.0 0.900 0.835 1e-176
340729974404 PREDICTED: s-adenosylmethionine synthase 1.0 0.900 0.843 1e-176
383852565404 PREDICTED: S-adenosylmethionine synthase 1.0 0.900 0.846 1e-176
156554747404 PREDICTED: S-adenosylmethionine synthase 1.0 0.900 0.837 1e-175
242010122406 S-adenosylmethionine synthetase, putativ 0.994 0.891 0.831 1e-175
157106365404 s-adenosylmethionine synthetase [Aedes a 1.0 0.900 0.815 1e-175
>gi|114052392|ref|NP_001040509.1| S-adenosylmethionine synthetase [Bombyx mori] gi|95102576|gb|ABF51226.1| S-adenosylmethionine synthetase [Bombyx mori] Back     alignment and taxonomy information
 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/364 (84%), Positives = 339/364 (93%)

Query: 1   MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
           MCDQISDAILDAHL QDPDAKVACET+TKTGMVLLCGEITSKA VDYQKV RET+KHIGY
Sbjct: 41  MCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGY 100

Query: 61  DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
           DDSSKGFDYKTCSVML LD+QSP+IAAGVH NR+ ++VGAGDQGLMFGYATDETEECMPL
Sbjct: 101 DDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPL 160

Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
           TVVLAHKLNQK+A+LRR+GEFWWARPD+KTQVTCEY FA GA VP+RVHTVVVS+QHSEK
Sbjct: 161 TVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEK 220

Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
           I L+ LR E+  KVIK VIPA YLDE T++HINPCG FI+GGPQ DAGLTGRKIIVDTYG
Sbjct: 221 ITLETLRDEIREKVIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYG 280

Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
           GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRC+VQV+YAIGVAEP+SIT+
Sbjct: 281 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCMVQVAYAIGVAEPLSITV 340

Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
           FDYGTS ++ ++LLSIVQ+NFDLRPGKIVK+LNLR PIYQ+TSTYGHFGR  FPWE PKP
Sbjct: 341 FDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGFPWESPKP 400

Query: 361 LVID 364
           L+++
Sbjct: 401 LIVE 404

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193631865|ref|XP_001946709.1| PREDICTED: s-adenosylmethionine synthase-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357603757|gb|EHJ63913.1| S-adenosylmethionine synthetase [Danaus plexippus] Back     alignment and taxonomy information
>gi|328719278|ref|XP_001942800.2| PREDICTED: s-adenosylmethionine synthase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91091770|ref|XP_966678.1| PREDICTED: similar to S-adenosylmethionine synthetase isoform 1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340729974|ref|XP_003403267.1| PREDICTED: s-adenosylmethionine synthase-like isoform 1 [Bombus terrestris] gi|350396331|ref|XP_003484518.1| PREDICTED: S-adenosylmethionine synthase-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|383852565|ref|XP_003701797.1| PREDICTED: S-adenosylmethionine synthase-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|156554747|ref|XP_001601797.1| PREDICTED: S-adenosylmethionine synthase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242010122|ref|XP_002425825.1| S-adenosylmethionine synthetase, putative [Pediculus humanus corporis] gi|212509758|gb|EEB13087.1| S-adenosylmethionine synthetase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|157106365|ref|XP_001649291.1| s-adenosylmethionine synthetase [Aedes aegypti] gi|108879892|gb|EAT44117.1| AAEL004501-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
FB|FBgn0005278408 Sam-S "S-adenosylmethionine Sy 1.0 0.892 0.747 2.3e-149
UNIPROTKB|A7E3T7395 MAT2A "S-adenosylmethionine sy 0.991 0.913 0.686 2.3e-135
UNIPROTKB|D0G777395 MATA2 "S-adenosylmethionine sy 0.991 0.913 0.686 2.3e-135
UNIPROTKB|E2R431395 MAT2A "Uncharacterized protein 0.991 0.913 0.684 7.7e-135
UNIPROTKB|P31153395 MAT2A "S-adenosylmethionine sy 0.991 0.913 0.681 9.8e-135
MGI|MGI:2443731395 Mat2a "methionine adenosyltran 0.991 0.913 0.681 9.8e-135
RGD|619985395 Mat2a "methionine adenosyltran 0.991 0.913 0.675 6.9e-134
UNIPROTKB|E1C735396 MAT1A "Uncharacterized protein 0.994 0.914 0.674 1.8e-133
ZFIN|ZDB-GENE-030131-2049395 mat2aa "methionine adenosyltra 0.991 0.913 0.678 2.3e-133
UNIPROTKB|Q00266395 MAT1A "S-adenosylmethionine sy 0.994 0.916 0.665 3.4e-132
FB|FBgn0005278 Sam-S "S-adenosylmethionine Synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 272/364 (74%), Positives = 307/364 (84%)

Query:     1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
             MCDQISDAILDAHL+QDP+AKVACETV KTGM+LLCGEITSKAVVDYQKV RET++HIGY
Sbjct:    44 MCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGY 103

Query:    61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
             DDSSKGFD+KTC+V+L LD+QSP+IAAGVH+NR  +++GAGDQG+MFGYATDETEECMPL
Sbjct:   104 DDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMFGYATDETEECMPL 163

Query:   121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
             TVVLAHKLN+K+A+LRRS  FWWARPD+KTQVTCEY F +G+                EK
Sbjct:   164 TVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEK 223

Query:   181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
             I L+ LR+EVM KV+K VIPA Y+D NTIVHINPCG F++GGP  DAGLTGRKIIVDTY 
Sbjct:   224 ISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYG 283

Query:   241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
                         KDFTKVDRSAAYAARWVAKSLVKAGLC+RCLVQVSYAIG+AEP+SIT+
Sbjct:   284 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITV 343

Query:   301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
             FDYGTS +S KELL I++RNFDLRPGKIVKDLNLR PIYQ+TSTYGHFGR  F WE  KP
Sbjct:   344 FDYGTSHKSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEEAKP 403

Query:   361 LVID 364
             L ID
Sbjct:   404 LEID 407
GO:0004478 "methionine adenosyltransferase activity" evidence=ISS;NAS
GO:0006556 "S-adenosylmethionine biosynthetic process" evidence=NAS;IMP
GO:0006730 "one-carbon metabolic process" evidence=NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0035220 "wing disc development" evidence=IGI
GO:0022416 "chaeta development" evidence=IGI
UNIPROTKB|A7E3T7 MAT2A "S-adenosylmethionine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D0G777 MATA2 "S-adenosylmethionine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R431 MAT2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P31153 MAT2A "S-adenosylmethionine synthase isoform type-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443731 Mat2a "methionine adenosyltransferase II, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619985 Mat2a "methionine adenosyltransferase II, alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C735 MAT1A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2049 mat2aa "methionine adenosyltransferase II, alpha a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q00266 MAT1A "S-adenosylmethionine synthase isoform type-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38YF8METK_LACSS2, ., 5, ., 1, ., 60.56550.96970.8847yesN/A
P40320METK_DROME2, ., 5, ., 1, ., 60.81591.00.8921yesN/A
P66767METK_STAAN2, ., 5, ., 1, ., 60.53670.96970.8869yesN/A
P66766METK_STAAM2, ., 5, ., 1, ., 60.53670.96970.8869yesN/A
Q837P9METK_ENTFA2, ., 5, ., 1, ., 60.54120.96970.8959yesN/A
Q2FFV6METK_STAA32, ., 5, ., 1, ., 60.53950.96970.8891N/AN/A
A8Z4L2METK_STAAT2, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
Q4LB23METK2_HORVU2, ., 5, ., 1, ., 60.57831.00.9238N/AN/A
P31153METK2_HUMAN2, ., 5, ., 1, ., 60.74510.99170.9139yesN/A
Q6SYB9METK2_TOBAC2, ., 5, ., 1, ., 60.57600.99170.9256N/AN/A
P10659METK1_YEAST2, ., 5, ., 1, ., 60.63150.99170.9450yesN/A
Q5KW02METK_GEOKA2, ., 5, ., 1, ., 60.55160.96970.8759yesN/A
P48466METK_NEUCR2, ., 5, ., 1, ., 60.65190.99170.9139N/AN/A
Q3THS6METK2_MOUSE2, ., 5, ., 1, ., 60.74510.99170.9139yesN/A
Q8NVZ9METK_STAAW2, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
Q91X83METK1_MOUSE2, ., 5, ., 1, ., 60.72720.99720.9166noN/A
Q6G8E3METK_STAAS2, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
P18298METK2_RAT2, ., 5, ., 1, ., 60.73960.99170.9139yesN/A
Q27522METK5_CAEEL2, ., 5, ., 1, ., 60.71421.00.9009noN/A
Q65FV8METK_BACLD2, ., 5, ., 1, ., 60.54340.96970.8825yesN/A
Q54F07METK_DICDI2, ., 5, ., 1, ., 60.62630.99170.9401yesN/A
P13444METK1_RAT2, ., 5, ., 1, ., 60.73070.99720.9143noN/A
A8FGH7METK_BACP22, ., 5, ., 1, ., 60.54070.96970.8825yesN/A
P50304METK_ASCIM2, ., 5, ., 1, ., 60.64460.99170.9185N/AN/A
P50305METK3_CAEEL2, ., 5, ., 1, ., 60.73351.00.9009noN/A
P50306METK4_CAEEL2, ., 5, ., 1, ., 60.73550.99720.8985yesN/A
Q8EP05METK_OCEIH2, ., 5, ., 1, ., 60.54070.96970.8869yesN/A
Q00266METK1_HUMAN2, ., 5, ., 1, ., 60.72450.99720.9189noN/A
A2Y053METK1_ORYSI2, ., 5, ., 1, ., 60.58960.99170.9116N/AN/A
B3WCC9METK_LACCB2, ., 5, ., 1, ., 60.55730.96700.8934yesN/A
A6QHX0METK_STAAE2, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
Q4R924METK2_MACFA2, ., 5, ., 1, ., 60.74510.99170.9139N/AN/A
Q2G1W4METK_STAA82, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
O60198METK_SCHPO2, ., 5, ., 1, ., 60.64540.99170.9450yesN/A
Q95032METK_ACACA2, ., 5, ., 1, ., 60.61360.99170.9304N/AN/A
Q5HEY9METK_STAAC2, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
P19358METK2_YEAST2, ., 5, ., 1, ., 60.61210.99170.9401noN/A
O17680METK1_CAEEL2, ., 5, ., 1, ., 60.67760.99720.9007noN/A
Q4LB22METK3_HORVU2, ., 5, ., 1, ., 60.58101.00.9238N/AN/A
A9NYY0METK2_PICSI2, ., 5, ., 1, ., 60.58761.00.9262N/AN/A
Q9FUZ1METK2_BRAJU2, ., 5, ., 1, ., 60.58960.99170.9185N/AN/A
Q0DKY4METK1_ORYSJ2, ., 5, ., 1, ., 60.58960.99170.9116yesN/A
Q6GFR6METK_STAAR2, ., 5, ., 1, ., 60.53670.96970.8891yesN/A
Q2KJC6METK1_BOVIN2, ., 5, ., 1, ., 60.72450.99720.9166noN/A
Q5R5H1METK2_PONAB2, ., 5, ., 1, ., 60.74510.99170.9139yesN/A
Q2YTK1METK_STAAB2, ., 5, ., 1, ., 60.53950.96970.8891yesN/A
Q03AU4METK_LACC32, ., 5, ., 1, ., 60.55730.96700.8934yesN/A
A4IRZ1METK_GEOTN2, ., 5, ., 1, ., 60.54610.96970.8737yesN/A
Q5WDZ8METK_BACSK2, ., 5, ., 1, ., 60.53800.96970.8716yesN/A
O43938METK_LEIIN2, ., 5, ., 1, ., 60.59130.99170.9209yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.60.979
3rd Layer2.5.10.983

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
PTZ00104398 PTZ00104, PTZ00104, S-adenosylmethionine synthase; 0.0
PRK05250384 PRK05250, PRK05250, S-adenosylmethionine synthetas 0.0
TIGR01034377 TIGR01034, metK, S-adenosylmethionine synthetase 0.0
COG0192388 COG0192, MetK, S-adenosylmethionine synthetase [Co 0.0
PLN02243386 PLN02243, PLN02243, S-adenosylmethionine synthase 0.0
PRK12459386 PRK12459, PRK12459, S-adenosylmethionine synthetas 1e-175
pfam02773138 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine s 3e-94
pfam02772119 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine s 4e-69
pfam00438100 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine s 1e-47
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional Back     alignment and domain information 
 Score =  632 bits (1631), Expect = 0.0
 Identities = 240/369 (65%), Positives = 296/369 (80%), Gaps = 5/369 (1%)

Query: 1   MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
           +CDQISDA+LDA L QDP +KVACET  KTGMV++ GEIT+KAVVDYQKV R+T+K IGY
Sbjct: 26  LCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGY 85

Query: 61  DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
           DD+ KG DYKTC+V++ +++QSPDIA GVH+ +  +D+GAGDQG+MFGYATDETEE MPL
Sbjct: 86  DDTEKGLDYKTCNVLVAIEQQSPDIAQGVHVGKKEEDIGAGDQGIMFGYATDETEELMPL 145

Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEY-CFARGACVPRRVHTVVVSVQHSE 179
           T  LA KL +++++LR++G   W RPD KTQVT EY    RG   P+RVHT+++S QH E
Sbjct: 146 THELATKLAKRLSELRKNGILPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDE 205

Query: 180 KIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239
            +  +E+R ++M  VIK VIPA  LDE T  H+NP G F++GGP  DAGLTGRKIIVDTY
Sbjct: 206 GVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFVIGGPHGDAGLTGRKIIVDTY 265

Query: 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT 299
           GGWGAHGGGAFSGKD +KVDRSAAYAARW+AKSLV AGLC+RCLVQVSYAIGVAEP+SI 
Sbjct: 266 GGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIH 325

Query: 300 LFDYGTSSR--SHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGR--DIFPW 355
           +  YGT  +    ++LL IVQ+NFDLRPG I+K+L+LR PI+Q+T++YGHFGR    F W
Sbjct: 326 VNTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRPIFQKTASYGHFGRSDPEFTW 385

Query: 356 EVPKPLVID 364
           EVPK L  +
Sbjct: 386 EVPKDLEHE 394

Length = 398
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase Back     alignment and domain information
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase Back     alignment and domain information
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain Back     alignment and domain information
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain Back     alignment and domain information
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
COG0192388 MetK S-adenosylmethionine synthetase [Coenzyme met 100.0
TIGR01034377 metK S-adenosylmethionine synthetase. Tandem isozy 100.0
PRK12459386 S-adenosylmethionine synthetase; Provisional 100.0
PLN02243386 S-adenosylmethionine synthase 100.0
PTZ00104398 S-adenosylmethionine synthase; Provisional 100.0
PRK05250384 S-adenosylmethionine synthetase; Validated 100.0
KOG1506|consensus383 100.0
PF02773138 S-AdoMet_synt_C: S-adenosylmethionine synthetase, 100.0
PF02772120 S-AdoMet_synt_M: S-adenosylmethionine synthetase, 100.0
PF00438100 S-AdoMet_synt_N: S-adenosylmethionine synthetase, 100.0
PRK04439399 S-adenosylmethionine synthetase; Provisional 98.15
PF01941396 AdoMet_Synthase: S-adenosylmethionine synthetase ( 98.14
COG1812400 MetK Archaeal S-adenosylmethionine synthetase [Ami 94.55
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-178  Score=1293.08  Aligned_cols=359  Identities=57%  Similarity=0.973  Sum_probs=351.5

Q ss_pred             CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894          1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE   80 (364)
Q Consensus         1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~   80 (364)
                      |||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++++|++|++|||+++++|||+++|.|+++|++
T Consensus        20 i~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~~Gfd~~t~~vl~~i~~   99 (388)
T COG0192          20 ICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIGE   99 (388)
T ss_pred             HHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccccCcCccceEEEeeccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhhhcccCCC-CCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeec
Q psy10894         81 QSPDIAAGVHINR-DRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFA  159 (364)
Q Consensus        81 QS~dIa~gV~~~~-~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~  159 (364)
                      |||||+|||+... ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+||||||+||||||+|++ 
T Consensus       100 QSpDIaqgVd~~~~~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~~LrpD~KsQVtv~Y~~-  178 (388)
T COG0192         100 QSPDIAQGVDEADEELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELPWLRPDAKSQVTVEYED-  178 (388)
T ss_pred             CChhHHHhhhhcccchhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCcccCCCcceeEEEEEcC-
Confidence            9999999999753 34689999999999999999999999999999999999999999999999999999999999985 


Q ss_pred             CCccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecC
Q psy10894        160 RGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY  239 (364)
Q Consensus       160 ~~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTY  239 (364)
                      ++  +|++|+|||+|+||++++++++|++.++|+||+|++|+++++++|+|+||||||||||||+|||||||||||||||
T Consensus       179 ~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGGP~gD~GLTGRKIIVDTY  256 (388)
T COG0192         179 NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY  256 (388)
T ss_pred             CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCCCCccccCccceEEEEcC
Confidence            35  8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHH
Q psy10894        240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQR  319 (364)
Q Consensus       240 GG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~  319 (364)
                      |||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+||||||+++++++|.++|++
T Consensus       257 GG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~VdtfgT~kvse~~i~~~v~~  336 (388)
T COG0192         257 GGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDTFGTGKVSEEKIEEAVRK  336 (388)
T ss_pred             CCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEccCCcccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHhccCCcchhhhccccCCCCCC-CCCCCCCCCC
Q psy10894        320 NFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI-FPWEVPKPLV  362 (364)
Q Consensus       320 ~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~-fpWE~~d~~~  362 (364)
                      +|||||++||+.|+|++|||++||+||||||++ |||||||+++
T Consensus       337 ~FdlrP~gIi~~LdL~~piY~~tAaYGHFGr~~~~pWEk~dkv~  380 (388)
T COG0192         337 VFDLRPAGIIKMLDLLRPIYRKTAAYGHFGREDDFPWEKLDKVD  380 (388)
T ss_pred             hcCCCHHHHHHHhccCCccchhcccccccCCCCCCCccchhhHH
Confidence            999999999999999999999999999999995 9999999874

>TIGR01034 metK S-adenosylmethionine synthetase Back     alignment and domain information
>PRK12459 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>PLN02243 S-adenosylmethionine synthase Back     alignment and domain information
>PTZ00104 S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>PRK05250 S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>KOG1506|consensus Back     alignment and domain information
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PRK04439 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea Back     alignment and domain information
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
2p02_A396 Crystal Structure Of The Alpha Subunit Of Human S- 1e-149
1qm4_A396 Methionine Adenosyltransferase Complexed With A L-M 1e-146
2obv_A384 Crystal Structure Of The Human S-adenosylmethionine 1e-146
3so4_A415 Methionine-Adenosyltransferase From Entamoeba Histo 1e-107
1fug_A383 S-adenosylmethionine Synthetase Length = 383 2e-96
3iml_A399 Crystal Structure Of S-Adenosylmethionine Synthetas 7e-95
1xrb_A383 S-adenosylmethionine Synthetase (mat, Atp: L-methio 2e-93
3s82_A407 Structure Of A S-Adenosylmethionine Synthetase From 6e-81
3tde_A408 Crystal Structure Of S-Adenosylmethionine Synthetas 6e-80
3rv2_A407 Crystal Structure Of S-Adenosylmethionine Synthetas 2e-79
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S- Adenosylmethionine Synthetase 2 Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  525 bits (1351), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 291/361 (80%)
Query: 1   MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
           +CDQISDA+LDAHL+QDPDAKVACETV KTGM+LL GEITS+A VDYQKV RE +KHIGY
Sbjct: 34  ICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGY 93
Query: 61  DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
           DDSSKGFDYKTC+V++ L++QSPDIA GVH++R+ +D+GAGDQGLMFGYATDETEECMPL
Sbjct: 94  DDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPL 153
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
           T+VLAHKLN K+A+LRR+G   W RPD+KTQVT +Y   RGA                E+
Sbjct: 154 TIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEE 213
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
           + L E+R  +  KVIKAV+PA YLDE+TI H+ P G F++GGPQ DAGLTGRKIIVDTY 
Sbjct: 214 VCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYG 273
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
                       KD+TKVDRSAAYAARWVAKSLVK GLCRR LVQVSYAIGV+ P+SI++
Sbjct: 274 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISI 333
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
           F YGTS +S +ELL IV++NFDLRPG IV+DL+L+ PIYQ+T+ YGHFGRD FPWEVPK 
Sbjct: 334 FHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKK 393
Query: 361 L 361
           L
Sbjct: 394 L 394
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A L-Methionine Analogous Length = 396 Back     alignment and structure
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine Synthetase 1 In Complex With The Product Length = 384 Back     alignment and structure
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica Length = 415 Back     alignment and structure
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase Length = 383 Back     alignment and structure
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei Length = 399 Back     alignment and structure
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S- Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues Are Replaced With Selenomethionine Residues (mse) Length = 383 Back     alignment and structure
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From Mycobacterium Avium Length = 407 Back     alignment and structure
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase Rv1392 From Mycobacterium Tuberculosis Length = 408 Back     alignment and structure
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Mycobacterium Marinum Length = 407 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 0.0
3so4_A415 Methionine-adenosyltransferase; structural genomic 0.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 0.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 0.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Back     alignment and structure
 Score =  711 bits (1837), Expect = 0.0
 Identities = 269/361 (74%), Positives = 317/361 (87%)

Query: 1   MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
           +CDQISDA+LDAHL+QDPDAKVACETV KTGM+LL GEITS+A VDYQKV RE +KHIGY
Sbjct: 34  ICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGY 93

Query: 61  DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
           DDSSKGFDYKTC+V++ L++QSPDIA GVH++R+ +D+GAGDQGLMFGYATDETEECMPL
Sbjct: 94  DDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPL 153

Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
           T+VLAHKLN K+A+LRR+G   W RPD+KTQVT +Y   RGA +P RVHT+V+SVQH E+
Sbjct: 154 TIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEE 213

Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
           + L E+R  +  KVIKAV+PA YLDE+TI H+ P G F++GGPQ DAGLTGRKIIVDTYG
Sbjct: 214 VCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYG 273

Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
           GWGAHGGGAFSGKD+TKVDRSAAYAARWVAKSLVK GLCRR LVQVSYAIGV+ P+SI++
Sbjct: 274 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISI 333

Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
           F YGTS +S +ELL IV++NFDLRPG IV+DL+L+ PIYQ+T+ YGHFGRD FPWEVPK 
Sbjct: 334 FHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKK 393

Query: 361 L 361
           L
Sbjct: 394 L 394
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Length = 415 Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Length = 399 Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Length = 407 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
3so4_A415 Methionine-adenosyltransferase; structural genomic 100.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 100.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 100.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 100.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 100.0
4hpv_A407 S-adenosylmethionine synthase; structural genomics 96.93
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=8.4e-182  Score=1332.00  Aligned_cols=364  Identities=58%  Similarity=1.000  Sum_probs=347.4

Q ss_pred             CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894          1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE   80 (364)
Q Consensus         1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~   80 (364)
                      |||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++++|||++||+|+++|++
T Consensus        38 icDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~~~gFd~~tc~Vl~~i~~  117 (415)
T 3so4_A           38 MCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQ  117 (415)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGGGTEETTTCEEEEEEEE
T ss_pred             HHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCcccCccCCceEEEEeccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894         81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR  160 (364)
Q Consensus        81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~  160 (364)
                      |||||+|||+..+..+++||||||||||||||||||||||||+|||+|++||+++||+|.+||||||+||||||+|++++
T Consensus       118 QSpDIaqGVd~~~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l~~LrPD~KtQVTveY~~~~  197 (415)
T 3so4_A          118 QSQDIAKGVHVEKKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVE  197 (415)
T ss_dssp             ECCC-----------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSSTTEEEEEEEEEEEEEEEET
T ss_pred             CChhhhhccccccchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCCCeeccCcceEEEEEEEcCC
Confidence            99999999997544568999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894        161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG  240 (364)
Q Consensus       161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG  240 (364)
                      |.++|+||+|||||+||++++++++|+++|+|+||+||+|++|++++|+||||||||||||||+||+|||||||||||||
T Consensus       198 g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYG  277 (415)
T 3so4_A          198 GHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGPMGDAGLTGRKIIVDTYG  277 (415)
T ss_dssp             TEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSCTTTTSCEETTSCTTTTTTT
T ss_pred             CCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEECCCcccccccCceEEEEccC
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894        241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN  320 (364)
Q Consensus       241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~  320 (364)
                      ||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||||||+++++++|.++|+++
T Consensus       278 G~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~TfGT~~~~~~~i~~~v~~~  357 (415)
T 3so4_A          278 GWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKN  357 (415)
T ss_dssp             TSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEEECSCCSSCHHHHHHHHHHH
T ss_pred             CcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEEeCCCCcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhccCCcchhhhccccCCCCCC--CCCCCCCCCCCC
Q psy10894        321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEVPKPLVID  364 (364)
Q Consensus       321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~--fpWE~~d~~~~~  364 (364)
                      |||||++||++|+|++|||++||+||||||++  ||||+||+|++.
T Consensus       358 FdlrP~~Ii~~L~L~~PiY~~tAaYGHFGR~~~~f~WE~~d~l~~~  403 (415)
T 3so4_A          358 FDMRPGMIIKELGLTRPIFQKTAVGGHFGRNDPDFKWEFPKELEIP  403 (415)
T ss_dssp             CCCCHHHHHHHHTTTSSCCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred             cCCCHHHHHHHcCCCCCcchhhcccccCCCCCCCCCCcCCcccCCC
Confidence            99999999999999999999999999999965  999999999863
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Back     alignment and structure
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 364
d2p02a3144 d.130.1.1 (A:274-417) S-adenosylmethionine synthet 1e-71
d1mxaa3152 d.130.1.1 (A:232-383) S-adenosylmethionine synthet 1e-68
d2p02a2126 d.130.1.1 (A:148-273) S-adenosylmethionine synthet 5e-55
d1mxaa2124 d.130.1.1 (A:108-231) S-adenosylmethionine synthet 1e-49
d2p02a1110 d.130.1.1 (A:38-147) S-adenosylmethionine syntheta 5e-36
d1mxaa1102 d.130.1.1 (A:1-102) S-adenosylmethionine synthetas 6e-32
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 144 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

 Score =  218 bits (556), Expect = 1e-71
 Identities = 114/142 (80%), Positives = 129/142 (90%)

Query: 220 LGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLC 279
           +GGPQ DAGLTGRKIIVDTYGGWGAHGGGAFSGKD+TKVDRSAAYAARWVAKSLVK GLC
Sbjct: 1   IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60

Query: 280 RRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIY 339
           RR LVQVSYAIGV+ P+SI++F YGTS +S +ELL IV++NFDLRPG IV+DL+L+ PIY
Sbjct: 61  RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIY 120

Query: 340 QQTSTYGHFGRDIFPWEVPKPL 361
           Q+T+ YGHFGRD FPWEVPK L
Sbjct: 121 QRTAAYGHFGRDSFPWEVPKKL 142
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
d2p02a3144 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa3152 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a2126 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa2124 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a1110 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa1102 S-adenosylmethionine synthetase {Escherichia coli 100.0
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

Probab=100.00  E-value=7.3e-88  Score=589.21  Aligned_cols=144  Identities=79%  Similarity=1.366  Sum_probs=142.7

Q ss_pred             eccCCCCcccCCceeEEecCCCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEE
Q psy10894        220 LGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT  299 (364)
Q Consensus       220 iGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~  299 (364)
                      ||||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (144)
T d2p02a3           1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS   80 (144)
T ss_dssp             SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred             CCCCccccCCccceEEEEcCCCccccCCcCCCCCceehhHHHHHHHHHHHHHHHHHhCCCCeeEEEEEeecCccccceEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCcHHHHHHHHHHcCCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCCCCCCCC
Q psy10894        300 LFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVI  363 (364)
Q Consensus       300 VdtfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~~d~~~~  363 (364)
                      ||||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||++||||+||++++
T Consensus        81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~PiY~~TAaYGHFGR~~f~WEk~dkve~  144 (144)
T d2p02a3          81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY  144 (144)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSSCGGGGSSSCSSSSTTCGGGSCCCCCC
T ss_pred             EEeCCCcccCHHHHHHHHHhccCCCHHHHHHHhCCCCCcchhccCccCCCCCCCCeeccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999985
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure