Psyllid ID: psy1089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTYVW
cccccccHHHHccHHHHHcccccccEEEEEccccHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHcccHHHHccccHHHHcccccccHHHHHHHHccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHHHcc
cHHHHcHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccHHcccccccccccHHHHHHccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcccccccEEEEEEEccccccEEcccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHccccHHHHHHHHcccccEEEccccccccccHHHHHHHcc
MHNILKPFFLRRLkcdvnlnlppkkttvidcpmvpaqeLMYTKVLTKTIGENREQVAEYFNTtvntssssdssgnesyIWFSEestlsnassvkagkreqtidsnqlvqqpkrrkcslnktydlTEIDRMFDSmierddtsdtevqvedkikvepcenssnaqdvpsaeekNVDEILHHVNVKMTNVTMVLRNIishpylinkpyrivdgkkemvcdenivsssGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLenynyyrlhgsirneerndavqqfngstEWGVFLLStraggqglnltaadtcilydsdwnpqvdIQAEArchrigqtkpvcIYRLVSHSTYQVHLFTidssgsvswssqsvkeklpigfmcvtgsflksssfftYLQTYVW
mhnilkpfflrrLKCDVnlnlppkkttvidcpmvpAQELMYTKVLTKTIGENREQVAEYFNttvntssssdssgNESYIWFSEESTLSNASsvkagkreqtidsnqlvqqpkrrkcslnktydlteIDRMFDSmierddtsdtevqvedkikvepcenssnaqdvpsaeeKNVDEILHHVNVKMTNVTMVLRNIishpylinKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTgsflksssfftylqtyvw
MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFnttvntssssdssgnesYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDssgsvswssqsVKEKLPIGFMCVTGSFLKSSSFFTYLQTYVW
***ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNT****************IW*****************************************YDLT*I**********************************************DEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTYV*
MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIG*********************SSGNESYIWFSEES*************************************************************************SSNAQDVPSAEEKNVDEIL*HVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSG**********************************QTYVW
MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTV************SYIWFSEES****************IDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEP***************KNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSS*********VKEKLPIGFMCVTGSFLKSSSFFTYLQTYVW
MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTG*****************
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MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTYVW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9NRZ9838 Lymphoid-specific helicas yes N/A 0.710 0.342 0.358 7e-56
Q60848821 Lymphocyte-specific helic yes N/A 0.712 0.350 0.365 4e-55
Q9HCK8 2581 Chromodomain-helicase-DNA no N/A 0.448 0.070 0.434 8e-42
Q09XV5 2582 Chromodomain-helicase-DNA no N/A 0.448 0.070 0.434 1e-41
Q9JIX5 2581 Chromodomain-helicase-DNA no N/A 0.448 0.070 0.434 1e-41
A2AJK6 2986 Chromodomain-helicase-DNA no N/A 0.435 0.058 0.443 2e-41
Q9P2D1 2997 Chromodomain-helicase-DNA no N/A 0.435 0.058 0.443 3e-41
Q06A37 3011 Chromodomain-helicase-DNA no N/A 0.418 0.056 0.421 3e-41
Q6PGB8 1046 Probable global transcrip no N/A 0.420 0.162 0.44 6e-41
Q8TD26 2715 Chromodomain-helicase-DNA no N/A 0.450 0.067 0.424 7e-41
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1 Back     alignment and function desciption
 Score =  218 bits (555), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 189/354 (53%), Gaps = 67/354 (18%)

Query: 1   MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
           +H IL PF LRRLK DV L +PPK+  V+  P+   QE+ YT ++ +TI       A  F
Sbjct: 440 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTI-------ANMF 492

Query: 61  NTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK 120
            +                   SE+ T+  + + +  +R              R+  + +K
Sbjct: 493 GS-------------------SEKETIELSPTGRPKRR-------------TRKSINYSK 520

Query: 121 TYDL-TEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHH 179
             D   E++++   +    D     V+V                ++P   E         
Sbjct: 521 IDDFPNELEKLISQIQPEVDRERAVVEV----------------NIPVESE--------- 555

Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
           VN+K+ N+ M+LR   +HPYLI  P   V   +E   DE +V++SGK ++L+++L +LK+
Sbjct: 556 VNLKLQNIMMLLRKCCNHPYLIEYPIDPV--TQEFKIDEELVTNSGKFLILDRMLPELKK 613

Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299
             HK L+FS M  +L+ + + C L ++N+ RL GS+   ER   +  FN   E  +FL+S
Sbjct: 614 RGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVS 673

Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
           TRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV+ +T
Sbjct: 674 TRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
Plays an essential role in normal development and survival. Involved in regulation of the expansion or survival of lymphoid cells. Required for de novo or maintenance DNA methylation. May control silencing of the imprinted CDKN1C gene through DNA methylation. May play a role in formation and organization of heterochromatin, implying a functional role in the regulation of transcription and mitosis.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2 Back     alignment and function description
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=5 Back     alignment and function description
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8 PE=1 SV=1 Back     alignment and function description
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus GN=Chd8 PE=1 SV=2 Back     alignment and function description
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=1 SV=1 Back     alignment and function description
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3 Back     alignment and function description
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1 Back     alignment and function description
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1 Back     alignment and function description
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
156399887 911 predicted protein [Nematostella vectensi 0.712 0.316 0.350 2e-56
432901812 852 PREDICTED: lymphoid-specific helicase-li 0.712 0.338 0.373 3e-56
213983091 840 helicase, lymphoid-specific [Xenopus (Si 0.710 0.341 0.364 4e-56
327281454 811 PREDICTED: lymphoid-specific helicase-li 0.715 0.356 0.380 4e-56
167522321 817 hypothetical protein [Monosiga brevicoll 0.737 0.364 0.378 2e-55
348538509 853 PREDICTED: lymphoid-specific helicase [O 0.720 0.341 0.368 3e-55
296220822 837 PREDICTED: lymphoid-specific helicase is 0.710 0.342 0.370 5e-55
296220826 805 PREDICTED: lymphoid-specific helicase is 0.710 0.356 0.370 5e-55
296220832 821 PREDICTED: lymphoid-specific helicase is 0.710 0.349 0.370 6e-55
417404904 838 Putative chromatin remodeling complex sw 0.702 0.338 0.364 1e-54
>gi|156399887|ref|XP_001638732.1| predicted protein [Nematostella vectensis] gi|156225855|gb|EDO46669.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 186/357 (52%), Gaps = 69/357 (19%)

Query: 1   MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI----GENREQV 56
           +H+IL PF LRRLK DV L+LPPKK  ++  P+   Q   Y   L KTI    G+N+++ 
Sbjct: 519 LHSILTPFLLRRLKTDVELSLPPKKEVLVRAPLTSKQTEFYRAALDKTILDIVGDNKDKK 578

Query: 57  AEYFNTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKC 116
            +    +           N +Y  F +E+          G  E+  +    +++ +R  C
Sbjct: 579 EDKVEISSTGRKKRKGRRNINYKIFDDEN----------GSIEELAEELATLEKSRREIC 628

Query: 117 SLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEI 176
           +                                     P + SS                
Sbjct: 629 T-------------------------------------PSQKSST--------------- 636

Query: 177 LHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
            + +++K+TN+ M+LR   +HPYL+  P   V   ++   DE +V  SGKM++L+Q++  
Sbjct: 637 -YDISIKITNILMLLRKCCNHPYLLEYPLDPV--TQQYKIDEELVRCSGKMLLLDQMVPA 693

Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296
           LK+  HK L+FS M K+L+ +++ C L  Y Y RL GS++ E+R + +  F    E  +F
Sbjct: 694 LKRRGHKILIFSQMTKMLDILQDYCYLRGYQYSRLDGSMKVEDRREEIDAFASDPEKFIF 753

Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
           LLSTRAGG GLNL+AADT I+YDSDWNPQ D+QA+ RCHRIGQTKP+ +YRLV+ +T
Sbjct: 754 LLSTRAGGLGLNLSAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPILVYRLVTSNT 810

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota
>gi|432901812|ref|XP_004076959.1| PREDICTED: lymphoid-specific helicase-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|213983091|ref|NP_001135693.1| helicase, lymphoid-specific [Xenopus (Silurana) tropicalis] gi|197246289|gb|AAI69179.1| Unknown (protein for MGC:189674) [Xenopus (Silurana) tropicalis] gi|197246404|gb|AAI68798.1| Unknown (protein for MGC:188967) [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|327281454|ref|XP_003225463.1| PREDICTED: lymphoid-specific helicase-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|167522321|ref|XP_001745498.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775847|gb|EDQ89469.1| predicted protein [Monosiga brevicollis MX1] Back     alignment and taxonomy information
>gi|348538509|ref|XP_003456733.1| PREDICTED: lymphoid-specific helicase [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|296220822|ref|XP_002756499.1| PREDICTED: lymphoid-specific helicase isoform 1 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|296220826|ref|XP_002756501.1| PREDICTED: lymphoid-specific helicase isoform 3 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|296220832|ref|XP_002756504.1| PREDICTED: lymphoid-specific helicase isoform 6 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|417404904|gb|JAA49185.1| Putative chromatin remodeling complex swi/snf component swi2 [Desmodus rotundus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
RGD|1309820494 Hells "helicase, lymphoid spec 0.448 0.366 0.494 1.6e-55
UNIPROTKB|F1P5V4839 HELLS "Uncharacterized protein 0.425 0.205 0.488 1e-54
UNIPROTKB|Q9NRZ9838 HELLS "Lymphoid-specific helic 0.448 0.215 0.489 3.1e-54
UNIPROTKB|E2QW28839 HELLS "Uncharacterized protein 0.448 0.215 0.483 4e-54
UNIPROTKB|E1BCV0816 HELLS "Uncharacterized protein 0.425 0.210 0.494 6.9e-54
UNIPROTKB|F1SC64838 HELLS "Uncharacterized protein 0.448 0.215 0.483 1.1e-53
MGI|MGI:106209821 Hells "helicase, lymphoid spec 0.448 0.220 0.489 1.2e-53
ZFIN|ZDB-GENE-030131-9923853 hells "helicase, lymphoid-spec 0.512 0.242 0.428 4.2e-52
UNIPROTKB|I3LTT5 778 SMARCA1 "Uncharacterized prote 0.418 0.217 0.465 1e-47
UNIPROTKB|K7GNV1 1061 SMARCA1 "Uncharacterized prote 0.418 0.159 0.465 5.5e-47
RGD|1309820 Hells "helicase, lymphoid specific" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 458 (166.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 91/184 (49%), Positives = 126/184 (68%)

Query:   170 EKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIV 229
             E N+  I   VN+K+ N+ M+LR   +HPY+I  P   V   +E   DE +V++SGK ++
Sbjct:   203 EGNIP-IESEVNLKLQNIMMLLRKCCNHPYMIEYPIDPVT--QEFKIDEELVTNSGKFLI 259

Query:   230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
             L+++L +LK+  HK LVFS M  +L+ + + C L N+ + RL GS+   ER   +  FN 
Sbjct:   260 LDRMLPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSEREKNIYSFNT 319

Query:   290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
               E  +FL+STRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV
Sbjct:   320 DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 379

Query:   350 SHST 353
             + +T
Sbjct:   380 TANT 383
GO:0000775 "chromosome, centromeric region" evidence=ISO
GO:0001655 "urogenital system development" evidence=ISO
GO:0003677 "DNA binding" evidence=IEA
GO:0003682 "chromatin binding" evidence=ISO
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISO
GO:0005721 "centromeric heterochromatin" evidence=ISO
GO:0006306 "DNA methylation" evidence=ISO
GO:0006342 "chromatin silencing" evidence=ISO
GO:0006346 "methylation-dependent chromatin silencing" evidence=ISO
GO:0007275 "multicellular organismal development" evidence=ISO
GO:0010216 "maintenance of DNA methylation" evidence=ISO
GO:0031508 "centromeric heterochromatin assembly" evidence=ISO
GO:0043066 "negative regulation of apoptotic process" evidence=ISO
UNIPROTKB|F1P5V4 HELLS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRZ9 HELLS "Lymphoid-specific helicase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QW28 HELLS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCV0 HELLS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC64 HELLS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:106209 Hells "helicase, lymphoid specific" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9923 hells "helicase, lymphoid-specific" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTT5 SMARCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GNV1 SMARCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 7e-47
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 2e-34
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 4e-26
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 8e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 8e-20
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 9e-09
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 4e-08
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 9e-05
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 0.002
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information 
 Score =  171 bits (436), Expect = 7e-47
 Identities = 77/178 (43%), Positives = 112/178 (62%), Gaps = 17/178 (9%)

Query: 183 KMTNVTMVLRNIISHPYLIN-----KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKL 237
           ++ N+ M LR   +HPYL        PY            E++V +SGKM++L++LL KL
Sbjct: 433 RLLNIAMQLRKCCNHPYLFQGAEPGPPY---------TTGEHLVENSGKMVLLDKLLPKL 483

Query: 238 KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGV 295
           K+ + + L+FS M ++L+ +E+  +   Y Y R+ G+   E+R+ ++  FN  GS ++ V
Sbjct: 484 KERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKF-V 542

Query: 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
           FLLSTRAGG G+NL  AD  ILYDSDWNPQVD+QA+ R HRIGQ K V ++R  +  T
Sbjct: 543 FLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600

Length = 1033
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
KOG0385|consensus 971 100.0
KOG0384|consensus 1373 100.0
KOG0389|consensus941 100.0
KOG0387|consensus 923 100.0
KOG0392|consensus1549 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0391|consensus 1958 100.0
KOG0386|consensus 1157 100.0
KOG0388|consensus1185 100.0
KOG0390|consensus776 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1002|consensus791 100.0
KOG1015|consensus 1567 100.0
KOG4439|consensus901 100.0
KOG1000|consensus689 99.97
KOG1016|consensus 1387 99.95
KOG1001|consensus674 99.94
PRK04914 956 ATP-dependent helicase HepA; Validated 99.92
KOG0383|consensus696 99.87
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.74
PRK13766 773 Hef nuclease; Provisional 99.73
KOG0331|consensus519 99.7
KOG0328|consensus400 99.68
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.66
KOG0333|consensus673 99.65
PTZ00110545 helicase; Provisional 99.64
KOG0330|consensus476 99.64
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.61
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.61
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.6
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.57
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.55
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.55
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.53
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.53
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.52
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.5
smart0049082 HELICc helicase superfamily c-terminal domain. 99.49
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.48
KOG0326|consensus459 99.48
KOG0341|consensus610 99.47
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.47
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.46
PHA02558501 uvsW UvsW helicase; Provisional 99.45
KOG0298|consensus1394 99.45
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.43
KOG0332|consensus477 99.43
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.41
PTZ00424401 helicase 45; Provisional 99.4
KOG0335|consensus482 99.38
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.38
KOG0336|consensus629 99.36
KOG4284|consensus 980 99.36
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.36
KOG0342|consensus543 99.36
KOG0340|consensus442 99.34
KOG0345|consensus 567 99.33
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.31
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.31
KOG0348|consensus708 99.3
KOG0343|consensus 758 99.28
KOG0346|consensus 569 99.27
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.24
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.23
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.22
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.22
KOG0327|consensus397 99.21
KOG0344|consensus593 99.2
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.17
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.16
KOG0334|consensus 997 99.16
PRK13767 876 ATP-dependent helicase; Provisional 99.16
KOG0350|consensus620 99.15
KOG0339|consensus 731 99.13
KOG0338|consensus 691 99.12
PRK05298652 excinuclease ABC subunit B; Provisional 99.12
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.09
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.08
KOG1123|consensus776 99.07
PRK10689 1147 transcription-repair coupling factor; Provisional 99.05
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 99.04
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.03
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.01
KOG0347|consensus 731 99.01
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 98.94
PRK02362 737 ski2-like helicase; Provisional 98.93
KOG0354|consensus 746 98.92
PHA02653 675 RNA helicase NPH-II; Provisional 98.9
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 98.88
KOG0337|consensus 529 98.88
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.86
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 98.85
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 98.84
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.84
PRK01172 674 ski2-like helicase; Provisional 98.78
KOG0349|consensus725 98.78
COG1202 830 Superfamily II helicase, archaea-specific [General 98.76
PRK00254 720 ski2-like helicase; Provisional 98.72
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 98.62
KOG0351|consensus 941 98.61
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 98.57
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.55
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 98.51
PRK09694 878 helicase Cas3; Provisional 98.45
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.44
PRK09401 1176 reverse gyrase; Reviewed 98.41
KOG0352|consensus 641 98.41
COG1201 814 Lhr Lhr-like helicases [General function predictio 98.4
PF13871278 Helicase_C_4: Helicase_C-like 98.27
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 98.2
PRK14701 1638 reverse gyrase; Provisional 98.18
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.17
TIGR00595505 priA primosomal protein N'. All proteins in this f 98.15
KOG0953|consensus 700 98.15
PRK12326 764 preprotein translocase subunit SecA; Reviewed 98.09
PRK05580679 primosome assembly protein PriA; Validated 97.99
COG0556663 UvrB Helicase subunit of the DNA excision repair c 97.88
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.85
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.79
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 97.77
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 97.77
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 97.76
KOG0353|consensus 695 97.69
KOG0329|consensus387 97.64
COG1205 851 Distinct helicase family with a unique C-terminal 97.51
COG1200677 RecG RecG-like helicase [DNA replication, recombin 97.51
COG4098441 comFA Superfamily II DNA/RNA helicase required for 97.34
CHL00122 870 secA preprotein translocase subunit SecA; Validate 97.23
KOG4150|consensus 1034 97.22
COG1204 766 Superfamily II helicase [General function predicti 97.02
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 96.96
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 96.84
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.65
COG4096 875 HsdR Type I site-specific restriction-modification 96.53
KOG0952|consensus 1230 96.41
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 96.4
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 96.26
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 96.25
KOG0922|consensus 674 96.25
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 96.08
KOG0950|consensus 1008 96.0
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 95.93
KOG0951|consensus 1674 95.9
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 95.79
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 95.2
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 95.07
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 94.61
KOG0924|consensus 1042 94.56
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 94.53
COG4889 1518 Predicted helicase [General function prediction on 93.65
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 93.45
KOG0949|consensus 1330 93.36
smart00492141 HELICc3 helicase superfamily c-terminal domain. 92.95
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 92.65
KOG1513|consensus 1300 92.54
TIGR00595 505 priA primosomal protein N'. All proteins in this f 92.46
KOG0948|consensus 1041 92.26
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 91.97
PRK05580 679 primosome assembly protein PriA; Validated 91.77
smart00491142 HELICc2 helicase superfamily c-terminal domain. 91.74
KOG0926|consensus 1172 91.23
COG1198730 PriA Primosomal protein N' (replication factor Y) 91.21
COG1198 730 PriA Primosomal protein N' (replication factor Y) 91.19
KOG0947|consensus 1248 90.93
KOG0920|consensus 924 90.67
KOG0923|consensus 902 89.49
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 89.37
TIGR00643 630 recG ATP-dependent DNA helicase RecG. 89.35
PRK14873 665 primosome assembly protein PriA; Provisional 87.04
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 86.29
PRK10689 1147 transcription-repair coupling factor; Provisional 81.74
COG1200 677 RecG RecG-like helicase [DNA replication, recombin 80.06
>KOG0385|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.9e-56  Score=451.10  Aligned_cols=241  Identities=46%  Similarity=0.780  Sum_probs=219.7

Q ss_pred             CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089           1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW   80 (404)
Q Consensus         1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (404)
                      ||.+|+||+|||+|.+|.+.||||++.+++|+||+.|+++|..++.+.+....+.                         
T Consensus       372 Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~-------------------------  426 (971)
T KOG0385|consen  372 LHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGE-------------------------  426 (971)
T ss_pred             HHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccc-------------------------
Confidence            6899999999999999999999999999999999999999999997653322110                         


Q ss_pred             hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089          81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS  160 (404)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (404)
                                                                                                      
T Consensus       427 --------------------------------------------------------------------------------  426 (971)
T KOG0385|consen  427 --------------------------------------------------------------------------------  426 (971)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhC
Q psy1089         161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT  240 (404)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~  240 (404)
                                      .......++|++|+||+||+||||+.+..+    .......++++.+|||+.+|.++|..+.+.
T Consensus       427 ----------------~~~~k~kL~NI~mQLRKccnHPYLF~g~eP----g~pyttdehLv~nSGKm~vLDkLL~~Lk~~  486 (971)
T KOG0385|consen  427 ----------------GKGEKTKLQNIMMQLRKCCNHPYLFDGAEP----GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQ  486 (971)
T ss_pred             ----------------ccchhhHHHHHHHHHHHhcCCccccCCCCC----CCCCCcchHHHhcCcceehHHHHHHHHHhC
Confidence                            000125699999999999999999988322    135566788999999999999999999999


Q ss_pred             CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEec
Q psy1089         241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYD  319 (404)
Q Consensus       241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d  319 (404)
                      |+|||||||++.++|+|++++..+|+.|+||||+++.++|..+|+.|+..+ .+.|+|+||+|||.||||+.|++||+||
T Consensus       487 GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyD  566 (971)
T KOG0385|consen  487 GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYD  566 (971)
T ss_pred             CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEec
Confidence            999999999999999999999999999999999999999999999999987 7899999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089         320 SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS  366 (404)
Q Consensus       320 ~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~  366 (404)
                      .+|||..+.||.+|+|||||+++|.|||||+.+||||+|++++..|.
T Consensus       567 SDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL  613 (971)
T KOG0385|consen  567 SDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL  613 (971)
T ss_pred             CCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999984

>KOG0384|consensus Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>KOG1016|consensus Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1513|consensus Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0948|consensus Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-36
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 3e-21
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 4e-18
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 5e-18
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 3e-17
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 11/181 (6%)
Query: 184 MTNVTMVLRNIISHPYLI-NKPYRIV----DGK--KEMVCDENIVSSSGKMIVLNQLLHK 236
           + N+   L+   +HPYL  N   R++    DGK  +E V    ++ SSGKM++L+QLL +
Sbjct: 509 LLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL-RGLIMSSGKMVLLDQLLTR 567
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWG 294
           LK+  H+ L+FS MV++L+ + +   ++  N+ RL G++ + +R  ++  FN   S ++ 
Sbjct: 568 LKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF- 626
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
           VFLLSTRAGG G+NL  ADT +++DSDWNPQ D+QA AR HRIGQ   V +YRLVS  T 
Sbjct: 627 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686
Query: 355 Q 355
           +
Sbjct: 687 E 687
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-65
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 2e-10
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-65
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-12
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 3e-46
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-44
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 2e-05
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 2e-43
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 5e-06
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-33
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-07
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 1e-05
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 6e-04
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  219 bits (560), Expect = 1e-65
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)

Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKE---------MVCDENIVSSSGKMIVLNQLLHK 236
           +    L+ + +HP LI +     +   +                   SGKM+VL+ +L  
Sbjct: 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAM 410

Query: 237 LK-QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEW 293
            +  T+ K ++ S   + L+  E+LC    Y Y RL G++  ++R   V++FN   S E+
Sbjct: 411 TRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEF 470

Query: 294 GVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
            +F+LS++AGG GLNL  A+  +++D DWNP  D QA AR  R GQ K   IYRL+S  T
Sbjct: 471 -IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.87
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.87
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.83
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.82
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.81
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.81
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.8
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.79
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.75
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.75
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.58
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.72
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 99.69
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.68
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.67
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.67
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 99.67
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.63
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.62
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.62
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.61
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.61
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.59
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.59
4gl2_A 699 Interferon-induced helicase C domain-containing P; 99.57
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.57
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.57
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.56
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.56
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 99.52
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.49
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.49
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.48
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.48
3h1t_A590 Type I site-specific restriction-modification syst 99.45
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.43
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.36
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.36
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.35
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.33
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.31
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.31
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.28
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.27
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.23
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.21
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.2
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.19
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.18
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 99.17
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.15
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.09
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.06
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.06
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.04
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.03
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.01
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.0
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 98.97
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 98.97
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 98.84
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 98.26
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 98.18
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 98.11
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 97.29
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 96.88
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 93.88
1gm5_A 780 RECG; helicase, replication restart; HET: DNA ADP; 91.18
3oiy_A 414 Reverse gyrase helicase domain; topoisomerase, DNA 90.88
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 83.86
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 80.54
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=5e-47  Score=362.19  Aligned_cols=198  Identities=28%  Similarity=0.404  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089         182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC  261 (404)
Q Consensus       182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L  261 (404)
                      ..+++.+++||++|+||+++...             ......|+|+..|.++|..+...++|+||||++..+++.|+..|
T Consensus        66 ~~~l~~l~~Lrq~~~hP~l~~~~-------------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L  132 (271)
T 1z5z_A           66 GMILSTLLKLKQIVDHPALLKGG-------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII  132 (271)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHCS-------------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHhcCC-------------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHH
Confidence            45788899999999999987631             12355699999999999999888999999999999999999999


Q ss_pred             Hhc-CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC
Q psy1089         262 VLE-NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT  340 (404)
Q Consensus       262 ~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~  340 (404)
                      ... |+++.+++|+++..+|++++++|++++++.|+|+++++||+||||+.|++||+||+||||..+.||+||+||+||+
T Consensus       133 ~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~  212 (271)
T 1z5z_A          133 EKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT  212 (271)
T ss_dssp             HHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred             HHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCC
Confidence            875 9999999999999999999999999977889999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHHHhhh
Q psy1089         341 KPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTY  402 (404)
Q Consensus       341 ~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  402 (404)
                      ++|+||+|++.+|+||+|++++..|.          .+...++....+.+..+|.+++..|+
T Consensus       213 ~~v~v~~li~~~TiEe~i~~~~~~K~----------~l~~~~~~~~~~~~~~~~~~~l~~l~  264 (271)
T 1z5z_A          213 RNVIVHKLISVGTLEEKIDQLLAFKR----------SLFKDIISSGDSWITELSTEELRKVI  264 (271)
T ss_dssp             -CCEEEEEEETTSHHHHHHHHHHHCH----------HHHTTGGGGTTHHHHTSCHHHHHHHH
T ss_pred             CceEEEEEeeCCCHHHHHHHHHHHHH----------HHHHHHHccCchhhhcCCHHHHHHHh
Confidence            99999999999999999999987773          33444555555567788888887765
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 404
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 9e-23
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 2e-14
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 1e-13
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 2e-12
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 1e-04
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score = 96.2 bits (238), Expect = 9e-23
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 11/185 (5%)

Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD---------ENIVSSSGKMIVL 230
           ++V   +    L+ + +HP LI +     +   +   D               SGKM+VL
Sbjct: 47  ISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 106

Query: 231 NQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
           + +L   +  T+ K ++ S   + L+  E+LC    Y Y RL G++  ++R   V++FN 
Sbjct: 107 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNN 166

Query: 290 STEWGV-FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
            +     F+LS++AGG GLNL  A+  +++D DWNP  D QA AR  R GQ K   IYRL
Sbjct: 167 PSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 226

Query: 349 VSHST 353
           +S  T
Sbjct: 227 LSTGT 231
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.91
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.86
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.85
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.85
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.84
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.83
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.82
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.79
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.75
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.69
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.66
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.43
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.28
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.27
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.16
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.06
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.78
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.74
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 98.59
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.42
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.23
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.17
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 94.26
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=3.7e-46  Score=364.99  Aligned_cols=211  Identities=29%  Similarity=0.450  Sum_probs=174.4

Q ss_pred             hhHHHHHHHHHHHhCCCCccccCCcccCCC---------cccccccccccCCcHHHHHHHHHHHhh-hCCCeEEEEecch
Q psy1089         182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---------KEMVCDENIVSSSGKMIVLNQLLHKLK-QTNHKTLVFSTMV  251 (404)
Q Consensus       182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~---------~~~~~~~~~~~~S~Kl~~L~~ll~~l~-~~~~KvlIFs~~~  251 (404)
                      .++++.+++||++|+||+|+..........         ............|+|+..|.+++..+. ..|+|+||||+|+
T Consensus        49 ~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~  128 (346)
T d1z3ix1          49 VSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYT  128 (346)
T ss_dssp             HHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCH
T ss_pred             HHHHHHHHHHHHHhCCHHHhhhhhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehh
Confidence            356788999999999999875421111100         011112223456999999999998874 5789999999999


Q ss_pred             HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHH
Q psy1089         252 KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQA  330 (404)
Q Consensus       252 ~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa  330 (404)
                      .++++|+.+|...|+++.+++|+++..+|+.+++.|+++. ...|+|+++++||.||||++|++||+||++|||..+.||
T Consensus       129 ~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa  208 (346)
T d1z3ix1         129 QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQA  208 (346)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHH
T ss_pred             hhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHh
Confidence            9999999999999999999999999999999999999876 456999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHHHhhh
Q psy1089         331 EARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTY  402 (404)
Q Consensus       331 ~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  402 (404)
                      +||+||+||+++|+||+|+++|||||+||+++..|          ..+...++....+....+|.+.+..||
T Consensus       209 ~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K----------~~l~~~v~~~~~~~~~~~~~~~l~~lf  270 (346)
T d1z3ix1         209 MARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK----------KALSSCVVDEEQDVERHFSLGELRELF  270 (346)
T ss_dssp             HTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH----------HHTSCCCCSCSSSCCCSSCHHHHHHHT
T ss_pred             hhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHH----------HHHHHHHhCCchhhhhcCCHHHHHHHh
Confidence            99999999999999999999999999999997766          344445555555566667777766654
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure