Psyllid ID: psy10901

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
MFSLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKSSMKVLL
ccccHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccc
ccHHHHcccHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHccccccccccc
mfslqpassfrellkdplgrdhftkfldkefsgenLKFWEAVQELkclpladvpakAEEIWSEFLavdascpinvdsrsheltrknienptrwsfDTAAAHVYHLMKsdsysrylrSDIYRDFlngskkkssmkvll
mfslqpassfrellkdplgrDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHEltrknienptrwsFDTAAAHVYHLMKSDSYSRYLRSDIYRdflngskkkssmkvll
MFSLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKSSMKVLL
*****************LGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL*************
MFSLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK************EIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY*****************
*********FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGS**********
*FSLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGS**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKSSMKVLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query137 2.2.26 [Sep-21-2011]
P49758472 Regulator of G-protein si no N/A 0.912 0.264 0.544 1e-34
Q9Z2H2472 Regulator of G-protein si yes N/A 0.912 0.264 0.536 4e-34
O46470469 Regulator of G-protein si no N/A 0.890 0.260 0.508 6e-33
P49809555 Regulator of G-protein si yes N/A 0.912 0.225 0.531 1e-32
P49802495 Regulator of G-protein si no N/A 0.883 0.244 0.504 2e-32
O54829469 Regulator of G-protein si no N/A 0.890 0.260 0.491 2e-32
P49803477 Regulator of G-protein si no N/A 0.912 0.262 0.48 2e-32
O94810467 Regulator of G-protein si no N/A 0.919 0.269 0.484 6e-29
Q9Z2H1443 Regulator of G-protein si no N/A 0.846 0.261 0.517 1e-28
O46469484 Regulator of G-protein si no N/A 0.919 0.260 0.477 9e-28
>sp|P49758|RGS6_HUMAN Regulator of G-protein signaling 6 OS=Homo sapiens GN=RGS6 PE=1 SV=5 Back     alignment and function desciption
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 91/125 (72%)

Query: 9   SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
           SF E+LKD +GRD F +FL+ EFS ENL+FW AVQ+LK  PL DV  + EEIW EFLA  
Sbjct: 336 SFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPG 395

Query: 69  ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSK 128
           A   IN+DS S+E+T +N+++  R++F+ A  H+Y LMKSDSY+R+LRS+ Y+D L   K
Sbjct: 396 APSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKK 455

Query: 129 KKSSM 133
           K  S+
Sbjct: 456 KGKSL 460
Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Activity on G(o)-alpha is specifically enhanced by the RGS6/Gbeta5 dimer.
Homo sapiens (taxid: 9606)
>sp|Q9Z2H2|RGS6_MOUSE Regulator of G-protein signaling 6 OS=Mus musculus GN=Rgs6 PE=1 SV=2 Back     alignment and function description
>sp|O46470|RGS7_BOVIN Regulator of G-protein signaling 7 OS=Bos taurus GN=RGS7 PE=1 SV=1 Back     alignment and function description
>sp|P49809|EGL10_CAEEL Regulator of G-protein signaling egl-10 OS=Caenorhabditis elegans GN=egl-10 PE=2 SV=1 Back     alignment and function description
>sp|P49802|RGS7_HUMAN Regulator of G-protein signaling 7 OS=Homo sapiens GN=RGS7 PE=1 SV=3 Back     alignment and function description
>sp|O54829|RGS7_MOUSE Regulator of G-protein signaling 7 OS=Mus musculus GN=Rgs7 PE=1 SV=2 Back     alignment and function description
>sp|P49803|RGS7_RAT Regulator of G-protein signaling 7 OS=Rattus norvegicus GN=Rgs7 PE=2 SV=2 Back     alignment and function description
>sp|O94810|RGS11_HUMAN Regulator of G-protein signaling 11 OS=Homo sapiens GN=RGS11 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z2H1|RGS11_MOUSE Regulator of G-protein signaling 11 OS=Mus musculus GN=Rgs11 PE=1 SV=2 Back     alignment and function description
>sp|O46469|RGS9_BOVIN Regulator of G-protein signaling 9 OS=Bos taurus GN=RGS9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
307186263 747 Regulator of G-protein signaling 7 [Camp 0.934 0.171 0.742 8e-52
91075938 492 PREDICTED: similar to regulator of g pro 0.948 0.264 0.730 1e-51
307197651 519 Regulator of G-protein signaling 7 [Harp 0.948 0.250 0.730 2e-51
322789706 540 hypothetical protein SINV_01794 [Solenop 0.934 0.237 0.734 2e-50
383861962 520 PREDICTED: regulator of G-protein signal 0.948 0.25 0.7 1e-49
332030007 592 Regulator of G-protein signaling 6 [Acro 0.948 0.219 0.715 2e-49
345490308 525 PREDICTED: regulator of G-protein signal 0.948 0.247 0.707 2e-48
350421426 517 PREDICTED: regulator of G-protein signal 0.934 0.247 0.687 7e-48
340726932 517 PREDICTED: regulator of G-protein signal 0.934 0.247 0.687 8e-48
328789178 519 PREDICTED: regulator of G-protein signal 0.934 0.246 0.679 2e-47
>gi|307186263|gb|EFN71926.1| Regulator of G-protein signaling 7 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/128 (74%), Positives = 110/128 (85%)

Query: 7   ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
           A S +ELL+DP+GR+ F +FLDKEFSGENLKFWE VQELK LP  DV  K EEIW EFL 
Sbjct: 603 AFSLQELLQDPVGREQFIRFLDKEFSGENLKFWETVQELKTLPQKDVQTKVEEIWREFLD 662

Query: 67  VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNG 126
            DASCPINVDSRS+E+T+KN+E P +W FD AAAHVYHLMKSDSYSRYLRS++Y+DFLNG
Sbjct: 663 TDASCPINVDSRSYEITKKNLEKPDQWCFDVAAAHVYHLMKSDSYSRYLRSEMYKDFLNG 722

Query: 127 SKKKSSMK 134
           SKKK+S+K
Sbjct: 723 SKKKTSVK 730

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91075938|ref|XP_967637.1| PREDICTED: similar to regulator of g protein signaling [Tribolium castaneum] gi|270014646|gb|EFA11094.1| hypothetical protein TcasGA2_TC004691 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307197651|gb|EFN78830.1| Regulator of G-protein signaling 7 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322789706|gb|EFZ14872.1| hypothetical protein SINV_01794 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383861962|ref|XP_003706453.1| PREDICTED: regulator of G-protein signaling 7-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332030007|gb|EGI69832.1| Regulator of G-protein signaling 6 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345490308|ref|XP_001605419.2| PREDICTED: regulator of G-protein signaling 7-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350421426|ref|XP_003492839.1| PREDICTED: regulator of G-protein signaling 7-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340726932|ref|XP_003401805.1| PREDICTED: regulator of G-protein signaling 7-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328789178|ref|XP_393403.3| PREDICTED: regulator of G-protein signaling 7-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
FB|FBgn0024941647 RSG7 "Regulator of G-protein s 0.905 0.191 0.629 3.4e-41
ZFIN|ZDB-GENE-040718-276459 rgs7 "regulator of G-protein s 0.875 0.261 0.55 4.6e-34
ZFIN|ZDB-GENE-030131-31489 rgs6 "regulator of G-protein s 0.883 0.247 0.570 4.1e-33
UNIPROTKB|P49758472 RGS6 "Regulator of G-protein s 0.912 0.264 0.544 6.7e-33
UNIPROTKB|Q7Z4K3475 RGS6 "Regulator of G-protein-s 0.905 0.261 0.548 8.5e-33
UNIPROTKB|Q7Z4K4477 RGS6 "RGS6 protein delta isofo 0.905 0.259 0.548 8.5e-33
UNIPROTKB|Q7Z4K5480 RGS6 "Regulator of G-protein-s 0.905 0.258 0.548 8.5e-33
UNIPROTKB|F1MM21 528 F1MM21 "Uncharacterized protei 0.905 0.234 0.548 1.1e-32
UNIPROTKB|J9P0T7455 RGS6 "Uncharacterized protein" 0.905 0.272 0.548 1.1e-32
UNIPROTKB|B7Z7N5 539 RGS6 "cDNA FLJ53896, highly si 0.905 0.230 0.548 1.4e-32
FB|FBgn0024941 RSG7 "Regulator of G-protein signalling 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 439 (159.6 bits), Expect = 3.4e-41, P = 3.4e-41
 Identities = 80/127 (62%), Positives = 103/127 (81%)

Query:     7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
             A S RELL D +GR+ FTKFL+KE+SGENLKFWE+VQE+K LP +++    ++IW EFLA
Sbjct:   509 AFSLRELLNDAIGREQFTKFLEKEYSGENLKFWESVQEMKALPQSEIKEAIQKIWQEFLA 568

Query:    67 VDASCPINVDSRSHELTRKNIENPT---RWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
              +A CP+NVDS+S EL R+ + +P+   RW FD AA+HVYHLMKSDSYSRYLRSD+Y+D+
Sbjct:   569 PEAPCPVNVDSKSVELAREAVNSPSGPNRWCFDVAASHVYHLMKSDSYSRYLRSDMYKDY 628

Query:   124 LNGSKKK 130
             LN S+KK
Sbjct:   629 LNCSRKK 635
GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=ISS
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005834 "heterotrimeric G-protein complex" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA
GO:0005886 "plasma membrane" evidence=IBA
GO:0005096 "GTPase activator activity" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
ZFIN|ZDB-GENE-040718-276 rgs7 "regulator of G-protein signalling 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-31 rgs6 "regulator of G-protein signalling 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P49758 RGS6 "Regulator of G-protein signaling 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4K3 RGS6 "Regulator of G-protein-signaling 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4K4 RGS6 "RGS6 protein delta isoform" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4K5 RGS6 "Regulator of G-protein-signaling 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MM21 F1MM21 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0T7 RGS6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z7N5 RGS6 "cDNA FLJ53896, highly similar to Regulator of G-protein signaling 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9Z2H2RGS6_MOUSENo assigned EC number0.5360.91240.2648yesN/A
P49809EGL10_CAEELNo assigned EC number0.53170.91240.2252yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
cd08705121 cd08705, RGS_R7-like, Regulator of G protein signa 3e-66
cd08737125 cd08737, RGS_RGS6, Regulator of G protein signalin 2e-45
cd08738121 cd08738, RGS_RGS7, Regulator of G protein signalin 1e-40
cd08740126 cd08740, RGS_RGS11, Regulator of G protein signali 1e-38
pfam00615117 pfam00615, RGS, Regulator of G protein signaling d 2e-38
smart00315118 smart00315, RGS, Regulator of G protein signalling 2e-38
cd08739121 cd08739, RGS_RGS9, Regulator of G protein signalin 7e-35
cd08706113 cd08706, RGS_R12-like, Regulator of G protein sign 2e-32
cd08713114 cd08713, RGS_RGS3, Regulator of G protein signalin 2e-26
cd07440113 cd07440, RGS, Regulator of G protein signaling (RG 4e-26
cd08743129 cd08743, RGS_RGS14, Regulator of G protein signali 1e-25
cd08712114 cd08712, RGS_RGS18, Regulator of G protein signali 3e-25
cd08715114 cd08715, RGS_RGS1, Regulator of G protein signalin 9e-25
cd08711125 cd08711, RGS_RGS8, Regulator of G protein signalin 1e-23
cd08718118 cd08718, RGS_RZ-like, Regulator of G protein signa 3e-23
cd08714114 cd08714, RGS_RGS4, Regulator of G protein signalin 4e-23
cd08745118 cd08745, RGS_RGS19, Regulator of G protein signali 2e-21
cd08746167 cd08746, RGS_RGS20, Regulator of G protein signali 2e-21
cd08723111 cd08723, RGS_RGS21, Regulator of G protein signali 1e-20
cd08742115 cd08742, RGS_RGS12, Regulator of G protein signali 1e-20
cd08710114 cd08710, RGS_RGS16, Regulator of G protein signali 2e-20
cd08717114 cd08717, RGS_RGS5, Regulator of G protein signalin 2e-19
cd08741113 cd08741, RGS_RGS10, Regulator of G protein signali 7e-19
cd08709114 cd08709, RGS_RGS2, Regulator of G protein signalin 2e-18
cd08744118 cd08744, RGS_RGS17, Regulator of G protein signali 8e-17
cd08716114 cd08716, RGS_RGS13, Regulator of G protein signali 2e-13
cd08720110 cd08720, RGS_SNX25, Regulator of G protein signali 4e-07
cd08708148 cd08708, RGS_FLBA, Regulator of G protein signalin 2e-06
cd08734109 cd08734, RGS-like_1, Uncharacterized Regulator of 4e-05
cd08707117 cd08707, RGS_Axin, Regulator of G protein signalin 4e-05
cd08721121 cd08721, RGS_AKAP2_2, Regulator of G protein signa 9e-05
>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain found in the R7 subfamily of proteins Back     alignment and domain information 
 Score =  196 bits (500), Expect = 3e-66
 Identities = 68/114 (59%), Positives = 89/114 (78%)

Query: 9   SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
           SF ELLKDP+GR+ F KFL+KEFSGENL+FWEA Q+LK  P + VP K +EI+ EFLA  
Sbjct: 8   SFSELLKDPVGREQFLKFLEKEFSGENLRFWEACQDLKYGPQSQVPEKVQEIYQEFLAPG 67

Query: 69  ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
           A   IN+DS++ E+T KN+++P R++FD A  H+Y LMK DSY R+LRSDIY++
Sbjct: 68  APSWINIDSKTMEITLKNLKDPHRYTFDAAQEHIYMLMKKDSYPRFLRSDIYKE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the R7 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R7 subfamily includes RGS6, RGS7, RGS9, and RGS11, all of which, in humans, are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes. In addition, R7 proteins were found to bind many other proteins outside of the G protein signaling pathways including: m-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, guanylyl cyclase, among others. Length = 121
>gnl|CDD|188691 cd08737, RGS_RGS6, Regulator of G protein signaling (RGS) domain found in the RGS6 protein Back     alignment and domain information
>gnl|CDD|188692 cd08738, RGS_RGS7, Regulator of G protein signaling (RGS) domain found in the RGS7 protein Back     alignment and domain information
>gnl|CDD|188694 cd08740, RGS_RGS11, Regulator of G protein signaling (RGS) domain found in the RGS11 protein Back     alignment and domain information
>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain Back     alignment and domain information
>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain Back     alignment and domain information
>gnl|CDD|188693 cd08739, RGS_RGS9, Regulator of G protein signaling (RGS) domain found in the RGS9 protein Back     alignment and domain information
>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS) domain found in the R12 subfamily of proteins Back     alignment and domain information
>gnl|CDD|188668 cd08713, RGS_RGS3, Regulator of G protein signaling (RGS) domain found in the RGS3 protein Back     alignment and domain information
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain superfamily Back     alignment and domain information
>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain found in the RGS14 protein Back     alignment and domain information
>gnl|CDD|188667 cd08712, RGS_RGS18, Regulator of G protein signaling (RGS) domain found in the RGS18 protein Back     alignment and domain information
>gnl|CDD|188670 cd08715, RGS_RGS1, Regulator of G protein signaling (RGS) domain found in the RGS1 protein Back     alignment and domain information
>gnl|CDD|188666 cd08711, RGS_RGS8, Regulator of G protein signaling (RGS) domain found in the RGS8 protein Back     alignment and domain information
>gnl|CDD|188673 cd08718, RGS_RZ-like, Regulator of G protein signaling (RGS) domain found in the RZ protein Back     alignment and domain information
>gnl|CDD|188669 cd08714, RGS_RGS4, Regulator of G protein signaling (RGS) domain found in the RGS4 protein Back     alignment and domain information
>gnl|CDD|188699 cd08745, RGS_RGS19, Regulator of G protein signaling (RGS) domain found in the RGS19 protein Back     alignment and domain information
>gnl|CDD|188700 cd08746, RGS_RGS20, Regulator of G protein signaling (RGS) domain found in the RGS20 protein Back     alignment and domain information
>gnl|CDD|188678 cd08723, RGS_RGS21, Regulator of G protein signaling (RGS) domain found in the RGS21 protein Back     alignment and domain information
>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain found in the RGS12 protein Back     alignment and domain information
>gnl|CDD|188665 cd08710, RGS_RGS16, Regulator of G protein signaling (RGS) domain found in the RGS16 protein Back     alignment and domain information
>gnl|CDD|188672 cd08717, RGS_RGS5, Regulator of G protein signaling (RGS) domain found in the RGS5 protein Back     alignment and domain information
>gnl|CDD|188695 cd08741, RGS_RGS10, Regulator of G protein signaling (RGS) domain found in the RGS10 protein Back     alignment and domain information
>gnl|CDD|188664 cd08709, RGS_RGS2, Regulator of G protein signaling (RGS) domain found in the RGS2 protein Back     alignment and domain information
>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain found in the RGS17 protein Back     alignment and domain information
>gnl|CDD|188671 cd08716, RGS_RGS13, Regulator of G protein signaling (RGS) domain found in the RGS13 protein Back     alignment and domain information
>gnl|CDD|188675 cd08720, RGS_SNX25, Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein Back     alignment and domain information
>gnl|CDD|188663 cd08708, RGS_FLBA, Regulator of G protein signaling (RGS) domain found in the FLBA (Fluffy Low BrlA) protein Back     alignment and domain information
>gnl|CDD|188688 cd08734, RGS-like_1, Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 1 Back     alignment and domain information
>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain found in the Axin protein Back     alignment and domain information
>gnl|CDD|188676 cd08721, RGS_AKAP2_2, Regulator of G protein signaling (RGS) domain 2 found in the A-kinase anchoring protein, D-AKAP2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 137
smart00315118 RGS Regulator of G protein signalling domain. RGS 99.97
PF00615118 RGS: Regulator of G protein signaling domain; Inte 99.95
KOG3589|consensus221 99.95
KOG3590|consensus 602 99.63
KOG3590|consensus 602 99.59
KOG0986|consensus 591 99.32
PF09128188 RGS-like: Regulator of G protein signalling-like d 98.82
>smart00315 RGS Regulator of G protein signalling domain Back     alignment and domain information 
Probab=99.97  E-value=2.5e-30  Score=172.56  Aligned_cols=115  Identities=44%  Similarity=0.707  Sum_probs=109.7

Q ss_pred             hHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCC-cchHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHhh
Q psy10901          9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNI   87 (137)
Q Consensus         9 sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~-~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~~   87 (137)
                      +|++||.||.|+.+|++||+.++|.|+|.||++|++|+.... .++...|..||++||.++||.++|||+.+++.+...+
T Consensus         1 ~l~~il~d~~~~~~F~~fl~~~~~~e~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~yi~~~s~~~~ni~~~~~~~i~~~~   80 (118)
T smart00315        1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENL   80 (118)
T ss_pred             CHHHHhcChHHHHHHHHHHHHhcchHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCceeCCHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999987 7799999999999999999999999999999999998


Q ss_pred             cC--CCHHHHHHHHHHHHHHhhcCcccchhccHHHHHH
Q psy10901         88 EN--PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF  123 (137)
Q Consensus        88 ~~--~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~  123 (137)
                      +.  |++++|++|+.+|+..|+.+.||+|+.|+.|.++
T Consensus        81 ~~~~~~~~~F~~~~~~v~~~l~~~~~~~F~~S~~y~~~  118 (118)
T smart00315       81 ESEEPPPDLFDEAQEEVYELLEKDSFPRFLESDYYLRF  118 (118)
T ss_pred             hcCCCChHHHHHHHHHHHHHHhcCchHHHhCCHhhccC
Confidence            86  8899999999999999999999999999999763

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways [] Back     alignment and domain information
>KOG3589|consensus Back     alignment and domain information
>KOG3590|consensus Back     alignment and domain information
>KOG3590|consensus Back     alignment and domain information
>KOG0986|consensus Back     alignment and domain information
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2es0_A148 Structure Of The Regulator Of G-Protein Signaling D 5e-36
2a72_A146 Structure Of The Regulator Of G-Protein Signaling D 1e-33
2d9j_A139 Solution Structure Of The Rgs Domain Of Regulator O 3e-33
1fqj_B147 Crystal Structure Of The Heterotrimeric Complex Of 3e-28
2pbi_A424 The Multifunctional Nature Of Gbeta5RGS9 REVEALED F 1e-27
1fqi_A147 Rgs9 Rgs Domain Length = 147 3e-27
2bv1_A145 Regulator Of G-Protein Signalling 1 (Human) Length 3e-22
2ode_D141 Crystal Structure Of The Heterodimeric Complex Of H 5e-21
2dlv_A140 Solution Structure Of The Rgs Domain Of Human Regul 2e-20
2jm5_A151 Solution Structure Of The Rgs Domain From Human Rgs 3e-20
2jnu_A154 Solution Structure Of The Rgs Domain Of Human Rgs14 4e-20
2oj4_A127 Crystal Structure Of Rgs3 Rgs Domain Length = 127 4e-20
2ihd_A155 Crystal Structure Of Human Regulator Of G-Protein S 5e-20
2ebz_A155 Solution Structure Of The Rgs Domain From Human Reg 4e-18
2crp_A150 Solution Structure Of The Rgs Domain Of Regulator O 1e-17
2i59_A138 Solution Structure Of Rgs10 Length = 138 2e-17
2dlr_A149 Solution Structure Of The Rgs Domain Of Human Regul 2e-17
2ihb_B153 Crystal Structure Of The Heterodimeric Complex Of H 3e-17
2bt2_A161 Structure Of The Regulator Of G-Protein Signaling 1 3e-17
2ik8_B140 Crystal Structure Of The Heterodimeric Complex Of H 3e-17
1agr_E205 Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4 Leng 4e-17
1ezt_A166 High-Resolution Solution Structure Of Free Rgs4 By 4e-17
2v4z_B142 The Crystal Structure Of The Human G-Protein Subuni 1e-16
1cmz_A152 Solution Structure Of Gaip (Galpha Interacting Prot 5e-16
3c7l_A137 Molecular Architecture Of Galphao And The Structura 1e-15
3c7k_B129 Molecular Architecture Of Galphao And The Structura 1e-15
2af0_A146 Structure Of The Regulator Of G-Protein Signaling D 2e-15
4ekc_B137 Structure Of Human Regulator Of G Protein Signaling 2e-15
1zv4_X158 Structure Of The Regulator Of G-Protein Signaling 1 2e-15
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs6 Length = 148 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (367), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 91/125 (72%)
Query: 9   SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
           SF E+LKD +GRD F +FL+ EFS ENL+FW AVQ+LK  PL DV  + EEIW EFLA  
Sbjct: 14  SFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPG 73
Query: 69  ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSK 128
           A   IN+DS S+E+T +N+++  R++F+ A  H+Y LMKSDSY+R+LRS+ Y+D L   K
Sbjct: 74  APSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKK 133
Query: 129 KKSSM 133
           K  S+
Sbjct: 134 KGKSL 138
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs7 Length = 146 Back     alignment and structure
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G- Protein Signaling 7 Length = 139 Back     alignment and structure
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 147 Back     alignment and structure
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 424 Back     alignment and structure
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain Length = 147 Back     alignment and structure
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human) Length = 145 Back     alignment and structure
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of G-Protein Signaling 18 Length = 140 Back     alignment and structure
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18 Length = 151 Back     alignment and structure
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14 Length = 154 Back     alignment and structure
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain Length = 127 Back     alignment and structure
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein Signaling 8, Rgs8 Length = 155 Back     alignment and structure
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator Of G-Protein Signaling 12 (Rgs12) Length = 155 Back     alignment and structure
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G- Protein Signalling 5 (Rgs 5) Length = 150 Back     alignment and structure
>pdb|2I59|A Chain A, Solution Structure Of Rgs10 Length = 138 Back     alignment and structure
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of G-Protein Signaling 10 Length = 149 Back     alignment and structure
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 153 Back     alignment and structure
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16 Length = 161 Back     alignment and structure
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 140 Back     alignment and structure
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4 Length = 205 Back     alignment and structure
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr Length = 166 Back     alignment and structure
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha ( Gnai3) In Complex With An Engineered Regulator Of G- Protein Signaling Type 2 Domain (Rgs2) Length = 142 Back     alignment and structure
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A Regulator Of G Protein Signaling Length = 152 Back     alignment and structure
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 137 Back     alignment and structure
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 129 Back     alignment and structure
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs2 Length = 146 Back     alignment and structure
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 137 Back     alignment and structure
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17 (Rgsz2) Length = 158 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2bv1_A145 Regulator of G-protein signalling 1; RGS1, RGS, st 3e-43
2a72_A146 Regulator of G-protein signalling 7; human RGS7, r 5e-43
2ihd_A155 RGS8, regulator of G-protein signaling 8; signalin 4e-41
2crp_A150 RGS5, regulator of G-protein signaling 5; RGS doma 7e-41
1fqi_A147 RGS9, regulator of G-protein signaling 9; phototra 9e-41
2dlv_A140 RGS18, regulator of G-protein signaling 18; RGS do 1e-40
2oj4_A127 RGS3, regulator of G-protein signaling 3, RGP3; RG 2e-40
2jm5_A151 RGS18, regulator of G-protein signaling 18; signal 2e-40
2pbi_A424 Regulator of G-protein signaling 9; helix WRAP, RG 3e-40
2dlr_A149 RGS10, regulator of G-protein signaling 10; RGS do 3e-40
1zv4_X158 RGS17, regulator of G-protein signaling 17; human 8e-40
2af0_A146 Regulator of G-protein signaling 2; helix, structu 1e-39
1cmz_A152 Protein (GAIP (G-alpha interacting) protein); RGS, 1e-39
2jnu_A154 RGS14, regulator of G-protein signaling 14; regula 3e-39
2ebz_A155 RGS12, regulator of G-protein signaling 12; RGS do 6e-39
2ihb_B153 Regulator of G-protein signalling 10, guanine nucl 2e-38
3c7l_A137 Regulator of G-protein signaling 16; RGS, RGS16, G 6e-38
1agr_E205 RGS4; GI-alpha-1, hydrolase, signal transduction, 3e-37
1dk8_A147 Axin; alpha-helix, PI-helix, signaling protein; HE 7e-35
2acx_A 576 G protein-coupled receptor kinase 6; GRK, G transf 5e-04
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C* Length = 145 Back     alignment and structure
 Score =  138 bits (349), Expect = 3e-43
 Identities = 53/122 (43%), Positives = 75/122 (61%)

Query: 4   LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSE 63
           +Q + S  +LL +  G++ F  FL  EFS EN++FW A ++ K      +P KAEEI+  
Sbjct: 20  MQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESDLLPCKAEEIYKA 79

Query: 64  FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
           F+  DA+  IN+D R+ E T K I+ PT   FD A   +Y LM+ DSY R+L+SDIY + 
Sbjct: 80  FVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNL 139

Query: 124 LN 125
           LN
Sbjct: 140 LN 141
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A Length = 146 Back     alignment and structure
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A Length = 155 Back     alignment and structure
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 150 Back     alignment and structure
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B* Length = 147 Back     alignment and structure
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 140 Back     alignment and structure
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens} Length = 127 Back     alignment and structure
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A Length = 151 Back     alignment and structure
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 424 Back     alignment and structure
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens} Length = 158 Back     alignment and structure
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B* Length = 146 Back     alignment and structure
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1 Length = 152 Back     alignment and structure
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Length = 154 Back     alignment and structure
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A Length = 153 Back     alignment and structure
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B* Length = 137 Back     alignment and structure
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A Length = 205 Back     alignment and structure
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A Length = 147 Back     alignment and structure
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
1fqi_A147 RGS9, regulator of G-protein signaling 9; phototra 100.0
2bv1_A145 Regulator of G-protein signalling 1; RGS1, RGS, st 100.0
2oj4_A127 RGS3, regulator of G-protein signaling 3, RGP3; RG 100.0
2dlv_A140 RGS18, regulator of G-protein signaling 18; RGS do 100.0
2a72_A146 Regulator of G-protein signalling 7; human RGS7, r 100.0
1zv4_X158 RGS17, regulator of G-protein signaling 17; human 100.0
2jm5_A151 RGS18, regulator of G-protein signaling 18; signal 100.0
3c7l_A137 Regulator of G-protein signaling 16; RGS, RGS16, G 100.0
2crp_A150 RGS5, regulator of G-protein signaling 5; RGS doma 100.0
2af0_A146 Regulator of G-protein signaling 2; helix, structu 100.0
2ihd_A155 RGS8, regulator of G-protein signaling 8; signalin 100.0
2dlr_A149 RGS10, regulator of G-protein signaling 10; RGS do 100.0
1cmz_A152 Protein (GAIP (G-alpha interacting) protein); RGS, 100.0
1dk8_A147 Axin; alpha-helix, PI-helix, signaling protein; HE 100.0
1agr_E205 RGS4; GI-alpha-1, hydrolase, signal transduction, 100.0
2ebz_A155 RGS12, regulator of G-protein signaling 12; RGS do 100.0
2ihb_B153 Regulator of G-protein signalling 10, guanine nucl 100.0
2jnu_A154 RGS14, regulator of G-protein signaling 14; regula 99.98
2pbi_A424 Regulator of G-protein signaling 9; helix WRAP, RG 99.97
3v5w_A 689 G-protein coupled receptor kinase 2; inhibitor com 98.98
3cx8_B203 RHO guanine nucleotide exchange factor 11; signal 98.95
2acx_A 576 G protein-coupled receptor kinase 6; GRK, G transf 98.87
4gou_A 518 EHRGS-rhogef; RGS domain, DH domain, PH domain, RH 98.62
1iap_A211 Guanine nucleotide exchange factor P115rhogef; RGS 98.49
3ab3_B246 RHO guanine nucleotide exchange factor 1; signal t 98.25
3c4z_A 543 Rhodopsin kinase; Ser/Thr kinase, RGS homology dom 97.84
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B* Back     alignment and structure
Probab=100.00  E-value=2.7e-35  Score=204.42  Aligned_cols=127  Identities=46%  Similarity=0.774  Sum_probs=121.9

Q ss_pred             chhhhHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCCcchHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q psy10901          5 QPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTR   84 (137)
Q Consensus         5 ~~~~sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~   84 (137)
                      +|..+|++||.||.|+.+|++||++++|.|||.||++|++|++....++...|..||++||.++||.+|||++.+|+.+.
T Consensus        20 ~w~~sl~~iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k~~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~   99 (147)
T 1fqi_A           20 RWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITV   99 (147)
T ss_dssp             HTTTCHHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHH
T ss_pred             HHHhHHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCcccCCCHHHHHHHH
Confidence            69999999999999999999999999999999999999999999877899999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCcccchhccHHHHHHHhccCCCC
Q psy10901         85 KNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKS  131 (137)
Q Consensus        85 ~~~~~~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~~~~~~~  131 (137)
                      ..+..|++++|+.||.+|+.+|+.|+||+|++|+.|.+++++...|.
T Consensus       100 ~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~p~  146 (147)
T 1fqi_A          100 KGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEPQ  146 (147)
T ss_dssp             HHTTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHSCCC-
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhCcHHHHhcCHHHHHHHHHhhCCC
Confidence            99988999999999999999999999999999999999999987764
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C* Back     alignment and structure
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens} Back     alignment and structure
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A Back     alignment and structure
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens} Back     alignment and structure
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A Back     alignment and structure
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B* Back     alignment and structure
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B* Back     alignment and structure
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A Back     alignment and structure
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1 Back     alignment and structure
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A Back     alignment and structure
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A Back     alignment and structure
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A Back     alignment and structure
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A Back     alignment and structure
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F Back     alignment and structure
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Back     alignment and structure
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica} Back     alignment and structure
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1 Back     alignment and structure
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C* Back     alignment and structure
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 137
d2jm5a1132 a.91.1.1 (A:3-134) Regulator of G-protein signalin 8e-38
d1fqia_138 a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [ 2e-37
d1agre_128 a.91.1.1 (E:) Regulator of G-protein signaling 4, 3e-36
d1cmza_128 a.91.1.1 (A:) Galpha interacting protein, GaIP {Hu 5e-36
d2ik8b1116 a.91.1.1 (B:65-180) Regulator of G-protein signali 6e-36
d1dk8a_147 a.91.1.1 (A:) Axin RGS-homologous domain {Human (H 8e-33
d1omwa1157 a.91.1.1 (A:29-185) G-protein coupled receptor kin 2e-29
d1htjf_182 a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (H 3e-23
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 Back     information, alignment and structure

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 18, RGS18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 8e-38
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 7   ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCL-PLADVPAKAEEIWSEFL 65
             SF +LL    G + FT+FL  EFS EN++FW A ++ K       +  KA+ I+ +F+
Sbjct: 10  GESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFI 69

Query: 66  AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
             DA   +N+D  + E+   +I  PT  SFD A + VY LM+ DSY+R+L+SDIY D + 
Sbjct: 70  QTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLME 129

Query: 126 G 126
           G
Sbjct: 130 G 130
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]} Length = 138 Back     information, alignment and structure
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 Back     information, alignment and structure
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 157 Back     information, alignment and structure
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
d1fqia_138 RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]} 100.0
d2ik8b1116 Regulator of G-protein signaling 16, RGS16 {Human 100.0
d1cmza_128 Galpha interacting protein, GaIP {Human (Homo sapi 100.0
d1agre_128 Regulator of G-protein signaling 4, RGS4 {Rat (Rat 100.0
d2jm5a1132 Regulator of G-protein signaling 18, RGS18 {Human 100.0
d1dk8a_147 Axin RGS-homologous domain {Human (Homo sapiens) [ 99.97
d1omwa1157 G-protein coupled receptor kinase 2, N-terminal do 99.96
d1htjf_182 Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [ 99.88
d1iapa_190 p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]} 98.56
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: RGS9, RGS domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-35  Score=200.13  Aligned_cols=127  Identities=46%  Similarity=0.766  Sum_probs=121.8

Q ss_pred             cchhhhHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCCcchHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q psy10901          4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT   83 (137)
Q Consensus         4 ~~~~~sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i   83 (137)
                      .+|+.||++||.||.|+.+|++||++++|++||.||++|++|+......+...|..||++||+++||.++|+++.+|+.+
T Consensus        12 ~~w~~sl~~IL~d~~~~~~F~~FL~~~~~~e~l~Fw~~ve~~k~~~~~~~~~~a~~Iy~~yi~~~s~~~vni~~~~r~~i   91 (138)
T d1fqia_          12 ERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDIT   91 (138)
T ss_dssp             HHTTTCHHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHH
T ss_pred             HHHHhCHHHHHcChHHHHHHHHHHhHcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHccccccccCCCHHHHHHH
Confidence            36899999999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhcCcccchhccHHHHHHHhccCCC
Q psy10901         84 RKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKK  130 (137)
Q Consensus        84 ~~~~~~~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~~~~~~  130 (137)
                      ...+..|++++|+.||++|+.+|+.++||+|++|+.|.+++++...|
T Consensus        92 ~~~~~~~~~~~F~~aq~~V~~~l~~~~~~~Fl~S~~y~~~l~~~~~p  138 (138)
T d1fqia_          92 VKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP  138 (138)
T ss_dssp             HHHTTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHSCCC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhHHHhHhcCHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999887654
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure