Psyllid ID: psy10936

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MASEDCMLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQPFRERTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLDSIPSK
cccccccccccccccEEEEEccccccEEEEEEEccccccEEEEcccccccccccccEEEEEEEEEEccEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccHHHHHccccccccEEEEEccEEEEEEEcccccccEEEEEEEcccccccEEEEccccccEEEEEccccccEEEEEEEcEEEEEEEEccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEccccccccccccccEEEEEEcccccccccEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEEcccccccHHHHccccccccccEEEccccccccccEEEEEEcccccccccc
ccccccEEEEcccccEEEEccccccEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEEEEcccccEEEEcccccccEEEEEEEEccccEEEEEEEEEEEccccccEEEEEccEEEccccccccccccccHHHHHHHHcccccccEEEEccccEEEEEEEEcccccEEEEEEEEcccccccEEEEEccccEEEEEEccccccEEEEEEEEEEEEEEEEEEcccccccccccccccccccHEEcccccEEEEEccccccccccccccccHEEEEEEccccccccccccccEEEEcccccccccEEcccEEcccccccHHHHHHccccccccEEEEEEEEEEEEEccccccEEEEEEEcccHHHHcHHHHHHccccccEEEEcccccccccEEEEEHHcccccccccc
masedcmlvtskeghffyksksiepvacgvflltdpdklVEVYFDYldvpcetgglvSVNCMLvtskeghffyksksvepvacgvflltdpdklVEVYFDYldvpcetgglvsfvdgwelngqffpsledhekplherftefcgtkriKTVFRSSQNAALIqyrvptrgkgFSFYVRyhknptpcnilleglsdvytlrnygksvncslttlyPAQVKVlsgkgesqpfrertsspqdnipcnilleglsdvytlrnygksvncslttlyPAQVKVLSLgvglsnskikrnqdvevetgtlhkadkrKFQYRiglgrgkgrnryvlldtntttySILCGVTTVRLvssgefdnavtvaltpaqvedldaaslcdkrgmpdyvqlggaegfdlAQLSVVDsicgldsipsk
MASEDCMLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTvfrssqnaaliqyrvptRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKgesqpfrertsspqdnipcNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGvglsnskikrnqdvevetgtlhkadkrkfqyriglgrgkgrnryvLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTValtpaqvedLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSicgldsipsk
MASEDCMLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQPFRERTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLDSIPSK
******MLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVL*******************IPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGL******
****DC**VTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFC************QNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKG**************NIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRN*YVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLD*****
MASEDCMLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVL***************PQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLDSIPSK
***EDCMLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQ*F****SSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLD*****
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MASEDCMLVTSKEGHFFYKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQPFRERTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLDSIPSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query410 2.2.26 [Sep-21-2011]
Q28557324 Corticotropin-releasing f N/A N/A 0.392 0.496 0.314 4e-24
Q91653321 Corticotropin-releasing f N/A N/A 0.395 0.504 0.300 1e-23
Q60571322 Corticotropin-releasing f yes N/A 0.392 0.5 0.302 1e-23
P24387322 Corticotropin-releasing f yes N/A 0.392 0.5 0.302 1e-23
P24388322 Corticotropin-releasing f yes N/A 0.392 0.5 0.308 2e-23
>sp|Q28557|CRHBP_SHEEP Corticotropin-releasing factor-binding protein OS=Ovis aries GN=CRHBP PE=2 SV=1 Back     alignment and function desciption
 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 58  SVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDG 117
           ++ C+ + S +G F + +   + + C  F + +P++ + +++D + + C  G ++   DG
Sbjct: 59  ALRCVDMLSLQGQFTFTADRRQ-LHCATFFIAEPEEFITIHYDLVSIDCLRGDILQVFDG 117

Query: 118 WELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVR 177
           W L G+ FPS +DH  P  ER+ +FC +   +   RSSQN A+I +RV   G GF+  V+
Sbjct: 118 WILKGEKFPSSQDHPLPTTERYVDFCDSGLSRRSIRSSQNVAMIFFRVHEPGNGFTITVK 177

Query: 178 YHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKV 219
              N  PCNI+ +  +  +TL    +  NCS + +YP  +K+
Sbjct: 178 TEPNLFPCNIISQTPNGRFTLVMPHQHRNCSFSIIYPVAIKI 219
Binds CRF and inactivates it. May prevent inappropriate pituitary-adrenal stimulation in pregnancy.
Ovis aries (taxid: 9940)
>sp|Q91653|CRHBP_XENLA Corticotropin-releasing factor-binding protein OS=Xenopus laevis GN=crhbp PE=2 SV=1 Back     alignment and function description
>sp|Q60571|CRHBP_MOUSE Corticotropin-releasing factor-binding protein OS=Mus musculus GN=Crhbp PE=2 SV=1 Back     alignment and function description
>sp|P24387|CRHBP_HUMAN Corticotropin-releasing factor-binding protein OS=Homo sapiens GN=CRHBP PE=1 SV=2 Back     alignment and function description
>sp|P24388|CRHBP_RAT Corticotropin-releasing factor-binding protein OS=Rattus norvegicus GN=Crhbp PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
91077116340 PREDICTED: similar to corticotropin rele 0.629 0.758 0.415 1e-64
328720479311 PREDICTED: corticotropin-releasing facto 0.417 0.549 0.614 1e-61
328699530262 PREDICTED: corticotropin-releasing facto 0.404 0.633 0.627 3e-60
321463209281 hypothetical protein DAPPUDRAFT_307333 [ 0.390 0.569 0.567 4e-50
380017237332 PREDICTED: corticotropin-releasing facto 0.619 0.765 0.396 2e-49
332024395331 Corticotropin-releasing factor-binding p 0.6 0.743 0.367 6e-49
60460899332 corticotropin releasing hormone binding 0.629 0.777 0.381 1e-48
307183109331 Corticotropin-releasing factor-binding p 0.395 0.489 0.539 3e-48
350411434333 PREDICTED: corticotropin-releasing facto 0.626 0.771 0.396 4e-48
295445032332 corticotropin releasing hormone binding 0.629 0.777 0.384 2e-47
>gi|91077116|ref|XP_970572.1| PREDICTED: similar to corticotropin releasing hormone binding protein [Tribolium castaneum] gi|270002038|gb|EEZ98485.1| hypothetical protein TcasGA2_TC000979 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/332 (41%), Positives = 184/332 (55%), Gaps = 74/332 (22%)

Query: 52  ETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGL 111
            T   +  +C+ +TS+EG F++KS   +  ACG ++ +DPD+ +EV+F+YLDVPCE GGL
Sbjct: 57  RTSDHIITDCIFMTSEEGDFYHKSSIADGTACGAYIFSDPDQTIEVHFNYLDVPCENGGL 116

Query: 112 VSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKG 171
           VSFVDGWELNG+FFPS  DH  PL+ RFTEFCG +++K  F+SSQN ALIQYR+P +G  
Sbjct: 117 VSFVDGWELNGEFFPSPSDHPLPLNSRFTEFCGKRKVKQTFKSSQNVALIQYRMPAKGTS 176

Query: 172 FSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQPFRE 231
           F F VR+ KNPTPCN+L +   D+YTLRNYGK  NCSL+TL+PA V+V            
Sbjct: 177 FGFSVRFIKNPTPCNVLFQSTEDIYTLRNYGKRSNCSLSTLFPAAVRV------------ 224

Query: 232 RTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKIKRN 291
                                        S+N  +         V SLG G+        
Sbjct: 225 ----------------------------ASLNVGI---------VPSLGRGI-------- 239

Query: 292 QDVEVETGTLHKA----DKRKFQYRIGLGRGKGRNRYVLLDTNTT----------TYSIL 337
              E+ETGT+HK      KR     + +G  +G +   LL  ++              I 
Sbjct: 240 ---ELETGTIHKVRSQCQKRGLDDYLQIGGSRGLDNANLLLADSVCGLDSKPGKHVEVIA 296

Query: 338 CGVTTVRLVSSGEFDNAVTVALTPAQVEDLDA 369
           CG TTVRLVSSG FDN+ TVA+     +D++ 
Sbjct: 297 CGTTTVRLVSSGAFDNSATVAIRGLTEDDING 328

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328720479|ref|XP_003247042.1| PREDICTED: corticotropin-releasing factor-binding protein-like isoform 2 [Acyrthosiphon pisum] gi|328720481|ref|XP_003247043.1| PREDICTED: corticotropin-releasing factor-binding protein-like isoform 3 [Acyrthosiphon pisum] gi|328720483|ref|XP_001952870.2| PREDICTED: corticotropin-releasing factor-binding protein-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328699530|ref|XP_003240961.1| PREDICTED: corticotropin-releasing factor-binding protein-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|321463209|gb|EFX74226.1| hypothetical protein DAPPUDRAFT_307333 [Daphnia pulex] Back     alignment and taxonomy information
>gi|380017237|ref|XP_003692566.1| PREDICTED: corticotropin-releasing factor-binding protein-like [Apis florea] Back     alignment and taxonomy information
>gi|332024395|gb|EGI64593.1| Corticotropin-releasing factor-binding protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|60460899|ref|NP_001012633.1| corticotropin releasing hormone binding protein [Apis mellifera] gi|60099323|emb|CAG62942.2| putative corticotropin releasing hormone-binding protein [Apis mellifera] Back     alignment and taxonomy information
>gi|307183109|gb|EFN70026.1| Corticotropin-releasing factor-binding protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350411434|ref|XP_003489350.1| PREDICTED: corticotropin-releasing factor-binding protein-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|295445032|gb|ADG21869.1| corticotropin releasing hormone binding protein [Apis cerana cerana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
FB|FBgn0039770353 CG15537 [Drosophila melanogast 0.402 0.467 0.417 9.1e-44
UNIPROTKB|E1C1R3322 CRHBP "Uncharacterized protein 0.392 0.5 0.320 4.1e-28
UNIPROTKB|E2RLG3322 CRHBP "Uncharacterized protein 0.392 0.5 0.333 4.1e-28
ZFIN|ZDB-GENE-040801-196321 crhbp "corticotropin releasing 0.392 0.501 0.296 4.1e-28
UNIPROTKB|Q28557324 CRHBP "Corticotropin-releasing 0.392 0.496 0.314 1.4e-27
UNIPROTKB|P24387322 CRHBP "Corticotropin-releasing 0.392 0.5 0.302 2.7e-27
UNIPROTKB|F1S2H2322 CRHBP "Uncharacterized protein 0.392 0.5 0.302 3.1e-27
UNIPROTKB|A7MBA3324 CRHBP "CRHBP protein" [Bos tau 0.392 0.496 0.308 3.6e-27
RGD|2403322 Crhbp "corticotropin releasing 0.392 0.5 0.308 3.6e-27
MGI|MGI:88497322 Crhbp "corticotropin releasing 0.392 0.5 0.302 7.1e-27
FB|FBgn0039770 CG15537 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 394 (143.8 bits), Expect = 9.1e-44, Sum P(3) = 9.1e-44
 Identities = 73/175 (41%), Positives = 113/175 (64%)

Query:    76 KSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPL 135
             + ++P  CG++++ +PD +VE+   + D  CETG L++FVDGWELNG++FP ++DH +PL
Sbjct:   106 QELQPEVCGLYVIGEPDTIVEITMKHYDANCETGALMAFVDGWELNGEYFPGIKDHHRPL 165

Query:   136 HERFTEFCGTKRI------KTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILL 189
              ER  EFC   R       K  FRSSQNAAL+QYR+P RG  F   VR+HK   PCN+L+
Sbjct:   166 EERVYEFCNNYRQWPRVSNKKFFRSSQNAALLQYRIPVRGS-FVANVRFHKITQPCNVLV 224

Query:   190 EGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQPFRERTSSPQDNIPCNI 244
             +  + +Y + N+G++ NC+++ L+PA V + S +   +  R   + P+ N  C +
Sbjct:   225 QDTAAMYKMTNFGQARNCTISALFPAVVSLASLRIGGKSVR---AQPKVNYDCQL 276
GO:0042562 "hormone binding" evidence=ISS
GO:0042445 "hormone metabolic process" evidence=ISS
GO:0005615 "extracellular space" evidence=ISS
UNIPROTKB|E1C1R3 CRHBP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLG3 CRHBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-196 crhbp "corticotropin releasing hormone binding protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q28557 CRHBP "Corticotropin-releasing factor-binding protein" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms
UNIPROTKB|P24387 CRHBP "Corticotropin-releasing factor-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2H2 CRHBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBA3 CRHBP "CRHBP protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2403 Crhbp "corticotropin releasing hormone binding protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:88497 Crhbp "corticotropin releasing hormone binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
pfam05428311 pfam05428, CRF-BP, Corticotropin-releasing factor 2e-60
>gnl|CDD|147555 pfam05428, CRF-BP, Corticotropin-releasing factor binding protein (CRF-BP) Back     alignment and domain information 
 Score =  198 bits (504), Expect = 2e-60
 Identities = 64/161 (39%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 61  CMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWEL 120
           C+ + S+ G F +++     + C +F++ +PD+++E+ + ++D+ CE G L+   DGWEL
Sbjct: 60  CLDMLSRPGQFTFQA-DRPQLVCALFVIGEPDEVIEIEYKHVDIDCEGGDLLKVFDGWEL 118

Query: 121 NGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHK 180
            G+ FPS +DH  PL ER+T+FC +   K  FRSSQN A++ +R+P  G GF+  VR+H 
Sbjct: 119 KGEKFPSSQDHPLPLMERYTDFCNSGSNKRTFRSSQNVAMLFFRIPGPGSGFTLTVRFHP 178

Query: 181 NPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLS 221
           NP PCN+L +     +T+ N G++ NCS + +YP  +K+ S
Sbjct: 179 NPFPCNVLSQDPEGSFTMVNPGQARNCSFSIIYPVVIKIAS 219

This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development. Length = 311

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
PF05428311 CRF-BP: Corticotropin-releasing factor binding pro 100.0
PF05428311 CRF-BP: Corticotropin-releasing factor binding pro 99.97
cd00041113 CUB CUB domain; extracellular domain; present in p 97.69
PF00431110 CUB: CUB domain CUB domain entry Spermadhesins fam 97.08
smart00042102 CUB Domain first found in C1r, C1s, uEGF, and bone 96.84
cd00041113 CUB CUB domain; extracellular domain; present in p 80.96
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP) Back     alignment and domain information 
Probab=100.00  E-value=9e-111  Score=809.47  Aligned_cols=255  Identities=38%  Similarity=0.706  Sum_probs=241.3

Q ss_pred             CCCCCCCeeeeeeeeeeecCcceEeeeCCCCCceEEEEEecCCCCeEEEEEEeecCCCCCCCeEEEEeeeeEccccCCCC
Q psy10936         49 VPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSL  128 (410)
Q Consensus        49 IdCE~G~rralrCmD~~SeeGef~F~ssrs~Q~vCgiFFI~EPdq~IeItv~~VdiPC~~g~ll~~~DGWeLnGe~FPs~  128 (410)
                      ++.|..|+|+++||||+|++|+|+|+|++ ||+|||+|||+|||++|||+|+++||||++|||||||||||||||||||+
T Consensus        48 ~~~e~~yrr~lrCldm~s~~G~f~f~a~~-pq~~Ca~y~iaePd~~IeI~~~~vdidC~~G~ll~v~DGW~LnGe~FPs~  126 (311)
T PF05428_consen   48 LSEEFIYRRPLRCLDMLSEEGQFTFTASR-PQLVCAAYFIAEPDELIEIEFDHVDIDCEGGDLLKVFDGWELNGEKFPSS  126 (311)
T ss_pred             cCccccccchhhheeeeccCceEEEecCC-CCceeEEEEEeCCCeEEEEEEEEeeccCCCCCEEEEEeceEECccCCcCc
Confidence            68899999999999999999999999997 89999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchhhhhhhcCCCccceeeeeccceEEEEEeecCCCCceEEEEeecCCCCCcceecccccceeEEeecCccccce
Q psy10936        129 EDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRNYGKSVNCS  208 (410)
Q Consensus       129 ~DH~lpl~eR~~efC~~~~~~~~~rSSQN~AliqyRvp~~G~gF~~~vr~~~Np~PCNil~~~~~~~yTl~n~g~~rNCS  208 (410)
                      +||||||+|||+|||+++..||+|||||||||||||||.|||||+++|||++||+|||||+|+|+|+|||||||||||||
T Consensus       127 ~DHplpl~eR~~efC~~~~~~~~~rSSQNvAmi~fRip~~GsgFt~~vR~~~Np~PCNVisq~~~g~fTl~n~gq~rNCS  206 (311)
T PF05428_consen  127 QDHPLPLEERYTEFCDSGPNRRSFRSSQNVAMIQFRIPSPGSGFTLTVRFIKNPFPCNVISQSPEGRFTLRNPGQRRNCS  206 (311)
T ss_pred             ccCCCchHHHHHHhccCCCCcceeEeccceEEEEEEecCCCCceEEEEEeCCCCCCceEeccCCCcceEEECCCcccCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeEEEEecCCCCCCcceeecCCCCCCCccchhccccccceeecccCccccceeeeeecceeeEEEeecccccccc
Q psy10936        209 LTTLYPAQVKVLSGKGESQPFRERTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNSKI  288 (410)
Q Consensus       209 fsiiyPv~i~i~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nCsl~~l~pa~v~~l~Lg~g~~~~~~  288 (410)
                      |||||||+|+|++                                                       ++||+.+.. ++
T Consensus       207 fs~iyP~~i~i~~-------------------------------------------------------L~lG~~~~l-~~  230 (311)
T PF05428_consen  207 FSIIYPVVISISD-------------------------------------------------------LSLGHTNGL-EL  230 (311)
T ss_pred             EEEEeeeEEEEEE-------------------------------------------------------EecccccCc-cc
Confidence            9999999999999                                                       888887554 32


Q ss_pred             cccccceeecceeeecccccccceeeecCCCCCCceeee--------cCCCceeEEeeCceEEEEeeccceeeeEEEEEe
Q psy10936        289 KRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLL--------DTNTTTYSILCGVTTVRLVSSGEFDNAVTVALT  360 (410)
Q Consensus       289 k~~~~~~~~tgt~~~~d~~~~~D~velgG~~Gld~~~m~--------d~~~~~~~i~C~~t~VRlVSSG~~~N~vt~~~~  360 (410)
                      |        +|+.++|+  +.+||||||||+|||++||+        ++++++|+|+||+|||||||||+|+|+|||+||
T Consensus       231 ~--------~~~~~~C~--~~~D~Vei~Gg~GlD~skM~~~~~lCg~~~~p~~~~I~Cd~TvVRLVSSG~~~N~vtf~yr  300 (311)
T PF05428_consen  231 Q--------RGVIHGCQ--GSGDFVEIGGGNGLDTSKMFPVADLCGSFSGPAQMKIGCDNTVVRLVSSGRYINRVTFSYR  300 (311)
T ss_pred             c--------cccccCCC--CcCCeEEECCcCCcCcccCEEhhHhhccCCCCceEEEecCCcEEEEEecCcceeEEEEEEe
Confidence            2        34456665  66899999999999999995        447999999999999999999999999999999


Q ss_pred             cCCcccchhh
Q psy10936        361 PAQVEDLDAA  370 (410)
Q Consensus       361 ~~~~~~l~~a  370 (410)
                      +|+++||+.|
T Consensus       301 ~l~~~dl~~~  310 (311)
T PF05428_consen  301 PLDEQDLELA  310 (311)
T ss_pred             eCChhhhhcc
Confidence            9999999976

Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP) Back     alignment and domain information
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast Back     alignment and domain information
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork Back     alignment and domain information
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein Back     alignment and domain information
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 63/464 (13%), Positives = 113/464 (24%), Gaps = 148/464 (31%)

Query: 18  YKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKS 77
           Y+ K I  V    F     D  V+  FD  DV      ++       + +E      SK 
Sbjct: 16  YQYKDILSV----FE----DAFVD-NFDCKDVQDMPKSIL-------SKEEIDHIIMSKD 59

Query: 78  VEPVACGVF--LLTDPDKLVEVYF------DY-----------LDVPCETGGLVSFVDGW 118
                  +F  LL+  +++V+ +       +Y                 T   +   D  
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 119 ELNGQFFPSL----EDHEKPLHERFTEF-------------CGTKRIKTVFRSSQNAALI 161
             + Q F             L +   E               G    KT          +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVALD---VCL 172

Query: 162 QYRVPTR--GKGF------------------SFYVRYHKN-----------PTPCNILLE 190
            Y+V  +   K F                      +   N               + +  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 191 GLSDVYTLRNYGKS-----------------VNCS--LTTLYPAQVKVLSGKGESQPFRE 231
            L  +   + Y                    ++C   LTT +      LS    +    +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 232 RTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVK-----VLSL-GVGLSN 285
             S              L+         K ++C    L P +V       LS+    + +
Sbjct: 293 HHS------------MTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRD 339

Query: 286 SKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLL-----DTNTTTYSILCGV 340
                +    V    L    +        L   + R  +  L       +  T  +L   
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPT-ILLS-- 393

Query: 341 TTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQL 384
               +       + + V      V  L   SL +K+     + +
Sbjct: 394 ---LIWFDVIKSDVMVV------VNKLHKYSLVEKQPKESTISI 428

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
3kq4_B457 Cubilin; protein-protein complex, cobalt, cobalt t 97.96
4gz9_A 577 Neuropilin-1, A5 protein; multi-domain, cell-CELL 97.84
4gz9_A577 Neuropilin-1, A5 protein; multi-domain, cell-CELL 97.45
3kq4_B457 Cubilin; protein-protein complex, cobalt, cobalt t 97.36
1sfp_A114 ASFP; spermadhesin, bovine seminal plasma protein, 97.35
1spp_B116 Major seminal plasma glycoprotein PSP-II; seminal 97.16
1spp_A109 Major seminal plasma glycoprotein PSP-I; seminal p 97.11
2qqk_A 579 Neuropilin-2; VEGF receptor, semaphorin receptor, 96.96
2wno_A149 Tumor necrosis factor-inducible gene 6 protein; gl 96.92
1nt0_A286 MAsp2, mannose-binding protein associated serine p 96.76
4aqb_A361 Mannan-binding lectin serine protease 1; blood clo 96.75
3poj_A115 Mannan-binding lectin serine protease 1; CUB domai 96.7
3dem_A278 Complement factor MAsp-3; complement system, innat 96.68
1nzi_A159 Complement C1S component; calcium, innate immunity 96.56
2qqk_A 579 Neuropilin-2; VEGF receptor, semaphorin receptor, 96.51
1szb_A170 Mannose binding lectin-associated serine protease- 96.4
3dem_A278 Complement factor MAsp-3; complement system, innat 96.24
1nt0_A286 MAsp2, mannose-binding protein associated serine p 96.2
4aqb_A361 Mannan-binding lectin serine protease 1; blood clo 96.1
2qqo_A 460 Neuropilin-2; VEGF receptor, semaphorin receptor, 95.82
2qqm_A450 Neuropilin-1; VEGF receptor, semaphorin receptor, 95.02
1spp_B116 Major seminal plasma glycoprotein PSP-II; seminal 91.03
1sfp_A114 ASFP; spermadhesin, bovine seminal plasma protein, 90.32
1spp_A109 Major seminal plasma glycoprotein PSP-I; seminal p 82.8
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Back     alignment and structure
Probab=97.96  E-value=0.00035  Score=68.12  Aligned_cols=174  Identities=17%  Similarity=0.273  Sum_probs=124.6

Q ss_pred             CCceEEEEEecCCCCeEEEEEEeecCC----CCCCCeEEEEeeeeEccccCCCCCCCCCcchhhhhhhcCCCccceeeee
Q psy10936         79 EPVACGVFLLTDPDKLVEVYFDYLDVP----CETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRS  154 (410)
Q Consensus        79 ~Q~vCgiFFI~EPdq~IeItv~~VdiP----C~~g~ll~~~DGWeLnGe~FPs~~DH~lpl~eR~~efC~~~~~~~~~rS  154 (410)
                      ++..|.--+.+.|++.|+|+|..+++.    |. .|.|+|.||        +    .    ...+-.||+.... ..+.|
T Consensus        23 ~~~~C~w~I~~~~g~~i~L~f~~f~le~~~~C~-~D~l~i~d~--------~----~----~~~l~~~CG~~~p-~~~~S   84 (457)
T 3kq4_B           23 HGINCTWHILVQPNHLIHLMFETFHLEFHYNCT-NDYLEVYDT--------D----S----ETSLGRYCGKSIP-PSLTS   84 (457)
T ss_dssp             SSCCCEEEEECCSSEEEEECCSCCCCCCCSSCC-SSEEEEECT--------T----S----SSEEEEECSSCCC-SCEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEEEeeecccCCCCC-ccEEEEEcC--------C----C----CcccceeCCCCCC-CcEEE
Confidence            567898777888999999999998864    65 489999996        1    1    1234558998654 68999


Q ss_pred             ccceEEEEEeec--CCCCceEEEEeecCCCCCcceecccccceeEEee----cCccccceeeeeeee-------------
Q psy10936        155 SQNAALIQYRVP--TRGKGFSFYVRYHKNPTPCNILLEGLSDVYTLRN----YGKSVNCSLTTLYPA-------------  215 (410)
Q Consensus       155 SQN~AliqyRvp--~~G~gF~~~vr~~~Np~PCNil~~~~~~~yTl~n----~g~~rNCSfsiiyPv-------------  215 (410)
                      +.|..+|.|+-.  ..++||.++.+.......|.-...+++|.++--|    |....+|...|.=|.             
T Consensus        85 ~~n~l~v~F~sd~~~~~~GF~~~y~~~~~~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~~f~l  164 (457)
T 3kq4_B           85 SGNSLMLVFVTDSDLAYEGFLINYEAISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSL  164 (457)
T ss_dssp             SSSEEEEEEECCSSCCCSCCCCEEEEEESSSCEEEEECSSCCCEECTTTTSCCCSSCEEEEEECCCSSCCCEEEEEEEEC
T ss_pred             eCCEEEEEEEecCccccCceeEeeecccccccccceeecCcEEECCCCCCCcCCCCceEEEEEEeCCCCEEEEEEEEEEe
Confidence            999999999863  5678999999998888899988888888887655    344567888776442             


Q ss_pred             ----------EEEEecCCC-----------------------------------CCCcceeecCCCCCCCccchhccccc
Q psy10936        216 ----------QVKVLSGKG-----------------------------------ESQPFRERTSSPQDNIPCNILLEGLS  250 (410)
Q Consensus       216 ----------~i~i~~~~~-----------------------------------~~~~~r~r~~~~~~~~~~~~~~~~~~  250 (410)
                                -++|.+|..                                   ...||+++...  .+-.|+-.+.+.+
T Consensus       165 e~~~~~C~~D~l~i~dg~~~~s~~~~~~cG~~~p~~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~--~~~~Cg~~~~~~~  242 (457)
T 3kq4_B          165 EEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTRSGFSAYWDG--SSTGCGGNLTTSS  242 (457)
T ss_dssp             CCCBTTBCSSEEEEESSSSTTSCEEEEECSSSCCCCEECSSSCEEEEEECCSSCCCCEEEEEEEC--CCCCCEECCCSSE
T ss_pred             ecCCCCcccceEEEecCCCCCcceeeeecCCCCCCCeEEcCCEEEEEEEeCCCCCcCCEEEEecc--ccCCCCCeEccCc
Confidence                      133333321                                   12233333332  1357988888899


Q ss_pred             cceeeccc----Cccccceeeeeecc
Q psy10936        251 DVYTLRNY----GKSVNCSLTTLYPA  272 (410)
Q Consensus       251 ~~~~~~~~----g~~~nCsl~~l~pa  272 (410)
                      |.++--||    ....+|+....-|.
T Consensus       243 G~i~SP~yP~~Yp~~~~C~w~I~~~~  268 (457)
T 3kq4_B          243 GTFISPNYPMPYYHSSECYWWLKSSH  268 (457)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEECCST
T ss_pred             ceeccCCCCCCCCCCCEEEEEEEeCC
Confidence            99887655    56778988775554
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H Back     alignment and structure
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H Back     alignment and structure
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Back     alignment and structure
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Back     alignment and structure
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Back     alignment and structure
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Back     alignment and structure
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Back     alignment and structure
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Back     alignment and structure
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Back     alignment and structure
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Back     alignment and structure
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Back     alignment and structure
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Back     alignment and structure
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Back     alignment and structure
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Back     alignment and structure
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Back     alignment and structure
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Back     alignment and structure
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Back     alignment and structure
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Back     alignment and structure
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Back     alignment and structure
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Back     alignment and structure
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Back     alignment and structure
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Back     alignment and structure
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1sfpa_111 Acidic seminal fluid protein (ASFP) {Cow (Bos taur 97.54
d1sppa_109 Major seminal plasma glycoprotein PSP-I {Pig (Sus 97.48
d1sppb_112 Major seminal plasma glycoprotein PSP-II {Pig (Sus 97.14
d2qqma3108 Mannose-binding protein associated serine protease 97.0
d1nzia1117 Complement C1S component {Human (Homo sapiens) [Ta 96.99
d1szba1121 Mannose-binding protein associated serine protease 96.98
d1nt0a2114 Mannose-binding protein associated serine protease 96.4
d1sppa_109 Major seminal plasma glycoprotein PSP-I {Pig (Sus 94.3
d1sfpa_111 Acidic seminal fluid protein (ASFP) {Cow (Bos taur 93.39
d1sppb_112 Major seminal plasma glycoprotein PSP-II {Pig (Sus 90.89
d1nzia1117 Complement C1S component {Human (Homo sapiens) [Ta 88.48
d1szba1121 Mannose-binding protein associated serine protease 80.99
>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.54  E-value=0.00035  Score=53.88  Aligned_cols=95  Identities=16%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             ecCcceEeeeCCCCCceEEEEEecCCCCeEEEEEEeecCCCCCCCeEEEEeeeeEccccCCCCCCCCCcchhhhhhhcCC
Q psy10936         66 SKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGT  145 (410)
Q Consensus        66 SeeGef~F~ssrs~Q~vCgiFFI~EPdq~IeItv~~VdiPC~~g~ll~~~DGWeLnGe~FPs~~DH~lpl~eR~~efC~~  145 (410)
                      +..|.|.  +.-.++..|--.+.+.+++.|.|+|..++.+|. -+.|.+.||=  +        .+     ..+..+|+.
T Consensus        13 ~~~G~i~--SPy~~~~~C~w~I~~p~g~~I~l~f~~f~~~c~-~d~v~i~dg~--~--------~~-----~~~~~~cg~   74 (111)
T d1sfpa_          13 EESGVIA--TYYGPKTNCVWTIQMPPEYHVRVSIQYLQLNCN-KESLEIIDGL--P--------GS-----PVLGKICEG   74 (111)
T ss_dssp             CSEEEEE--CCCSSCSEEEEEEECCTTCEEEEEEEEEECCTT-TEEEEEESSS--T--------TS-----CEEEEESEE
T ss_pred             CCceeEc--CCCCCCCcEEEEEEcCCCceeeEEEeecccccc-eeeeeecCCc--c--------ce-----eeeccccCC
Confidence            4456544  334478899988889999999999999999997 4789998861  1        11     134568997


Q ss_pred             CccceeeeeccceEEEEEee--cCCCCceEEEEeecC
Q psy10936        146 KRIKTVFRSSQNAALIQYRV--PTRGKGFSFYVRYHK  180 (410)
Q Consensus       146 ~~~~~~~rSSQN~AliqyRv--p~~G~gF~~~vr~~~  180 (410)
                      ..  ..|+|+.|.+.|.|+=  ...++||.++.+-.+
T Consensus        75 ~~--~~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~~p  109 (111)
T d1sfpa_          75 SL--MDYRSSGSIMTVKYIREPEHPASFYEVLYFQDP  109 (111)
T ss_dssp             EE--EEEECSSSEEEEEEEECTTSCCCCCEEEEEEES
T ss_pred             Cc--CCEEeCCCEEEEEEEECCCcCCCCEEEEEEEec
Confidence            64  5799999999999984  346889999887654
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure