Psyllid ID: psy10962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MISCRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR
Secondary Structure (PSIPRED)
ccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccEEEEEEcccccEEEEcccccccEEEEEcccccccccEEccccccEEEcccccHHHHHHHHHHHHHccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHEEEEEEEEEEEccccEEEccccccEEEcccccEEEcccEEEHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccEEEEEccccccEEEEEEEHHHcEEEEEEcccEEEEEEEEcccccEEEEcccccHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
miscrissyvsnnvgkclrqvkcvqsysrcvcnsngiighgshrktlvQSQDNVLNFTGIHCRNLcssltgsislpeyEVICNETLESLTDYFDVIVEENthlenadvtygdgvltvnfgnphgtyvinrqtpnkqiwlssptsgpkrydfdpsrniwiykhdnksLHDLLQEEIVTIVTSnvdfysncshsgkhr
Flexible Loop (DISEMBL)
miscrissyvsnnvgkCLRQVKCVQSYSRCVCNSngiighgshRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVInrqtpnkqiwlssptsgpkryDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFysncshsgkhr
Low Complexity Region (SEG)
MISCRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR
Disordered region (IsUnstruct)
***CRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLS********YDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNC*******
Disordered Region (DISOPRED)
****************************************************************************EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYS**S******
Disordered Region (DISEMBL)
MISCRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYS*********
Disordered Region (DISPRO)
MISCRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISCRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q9W385	190	Frataxin homolog, mitocho	yes	N/A	0.551	0.568	0.621	2e-34
O35943	207	Frataxin, mitochondrial O	yes	N/A	0.668	0.632	0.496	2e-30
Q16595	210	Frataxin, mitochondrial O	yes	N/A	0.673	0.628	0.467	4e-29
Q05B87	217	Frataxin, mitochondrial O	yes	N/A	0.622	0.562	0.488	1e-28
Q8HXX9	210	Frataxin, mitochondrial O	N/A	N/A	0.673	0.628	0.467	1e-28
D3ZYW7	208	Frataxin, mitochondrial O	yes	N/A	0.933	0.879	0.356	5e-25
Q9TY03	136	Frataxin, mitochondrial O	yes	N/A	0.551	0.794	0.509	4e-24
Q54C45	193	Frataxin, mitochondrial O	yes	N/A	0.489	0.497	0.479	9e-18
Q9ZR07	187	Frataxin, mitochondrial O	yes	N/A	0.413	0.433	0.471	3e-17
O74831	158	Frataxin homolog, mitocho	yes	N/A	0.653	0.810	0.351	6e-16

>sp|Q9W385|FRDA_DROME Frataxin homolog, mitochondrial OS=Drosophila melanogaster GN=fh PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 84/111 (75%), Gaps = 3/111 (2%)

Query: 78  YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQI 137
           YE +C++TL++L DYF+ + E  + L+  DV Y DGVLTVN G  HGTYVINRQTPNKQI
Sbjct: 73  YERVCSDTLDALCDYFEELTENASELQGTDVAYSDGVLTVNLGGQHGTYVINRQTPNKQI 132

Query: 138 WLSSPTSGPKRYDF--DPSRNIWIYKHDNKSLHDLLQEEIVTIVTS-NVDF 185
           WLSSPTSGPKRYDF    +   WIYKH  +SLH+LLQ+EI  I+ S +VDF
Sbjct: 133 WLSSPTSGPKRYDFVGTVAAGRWIYKHSGQSLHELLQQEIPGILKSQSVDF 183

Promotes the biosynthesis of heme as well as the assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+). May be able to store large amounts of the metal in the form of a ferrihydrite mineral by oligomerization.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 6EC: .EC: 3EC: .EC: 1

>sp|O35943|FRDA_MOUSE Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=1 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 95/137 (69%), Gaps = 6/137 (4%)

Query: 60  IHCRNLCSSLTGSISLPE--YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTV 117
           +H RNL  +L    SL E  YE +  ETL+SL ++F+ + ++   LE+ DV++GDGVLT+
Sbjct: 73  VHLRNL-GTLDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTI 131

Query: 118 NFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVT 177
             G   GTYVIN+QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+  
Sbjct: 132 KLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWT-GKN-WVYSHDGVSLHELLARELTK 189

Query: 178 IVTSNVDFYSNCSHSGK 194
            + + +D  S+ ++SGK
Sbjct: 190 ALNTKLDL-SSLAYSGK 205

Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization. Modulates the RNA-binding activity of ACO1.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q16595|FRDA_HUMAN Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2

 Score =  127 bits (319), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 7/139 (5%)

Query: 60  IHCRNLCSSLT----GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVL 115
           ++  NL  S T    GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVL
Sbjct: 73  VYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVL 132

Query: 116 TVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEI 175
           TV  G   GTYVIN+QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+
Sbjct: 133 TVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWT-GKN-WVYSHDGVSLHELLAAEL 190

Query: 176 VTIVTSNVDFYSNCSHSGK 194
              + + +D  S+ ++SGK
Sbjct: 191 TKALKTKLDL-SSLAYSGK 208

Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization; however, the physiological relevance is unsure as reports are conflicting and the function has only been shown using heterologous overexpression systems. Modulates the RNA-binding activity of ACO1.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q05B87|FRDA_BOVIN Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 85/125 (68%), Gaps = 3/125 (2%)

Query: 70  TGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVIN 129
            G++    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN
Sbjct: 88  AGTLDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVIN 147

Query: 130 RQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNC 189
           +QTPNKQIWLSSP+SGPKRYD+   RN W+Y HD  SLH+LL  E+   + + +D  S  
Sbjct: 148 KQTPNKQIWLSSPSSGPKRYDWT-GRN-WVYSHDGVSLHELLATELTQALKTKLDL-SAL 204

Query: 190 SHSGK 194
           ++SGK
Sbjct: 205 AYSGK 209

Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization. Modulates the RNA-binding activity of ACO1.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8HXX9|FRDA_MACFA Frataxin, mitochondrial OS=Macaca fascicularis GN=FXN PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 91/139 (65%), Gaps = 7/139 (5%)

Query: 60  IHCRNLCSSLT----GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVL 115
           ++  NL  S T    GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVL
Sbjct: 73  VYLMNLRKSGTLGHPGSLDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVL 132

Query: 116 TVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEI 175
           TV  G   GTYVIN+QTPNKQIWLSSP+SGPKRYD    +N W+Y HD  SLH+LL  E+
Sbjct: 133 TVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYD-RTGKN-WVYSHDGVSLHELLGAEL 190

Query: 176 VTIVTSNVDFYSNCSHSGK 194
              + + +D  S+ ++SGK
Sbjct: 191 TKALKTKLDL-SSLAYSGK 208

Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization. Modulates the RNA-binding activity of ACO1.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|D3ZYW7|FRDA_RAT Frataxin, mitochondrial OS=Rattus norvegicus GN=Fxn PE=1 SV=1

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 16/199 (8%)

Query: 3   SCRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNGIIGHGSHRKTLVQSQDNVLNFTG--- 59
           + R S++V N  G+  R   C +       N++ I     H    +     +LN      
Sbjct: 17  ASRASAWVRNPRGRE-RIGTCGRRGLHVTANADAI----RHSHLNLHYLGQILNIKKQSV 71

Query: 60  --IHCRNLCSSLTGSISLPE--YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVL 115
             +H RN   +L    SL E  YE +  ETL++L ++F+ + ++   L++ DV++GDGVL
Sbjct: 72  CVVHLRN-SGTLGNPSSLDETAYERLAEETLDALAEFFEDLADKPYTLKDYDVSFGDGVL 130

Query: 116 TVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEI 175
           T+  G   GTYVIN+QTP   +W S P SGPKRYD+   +N W+Y HD  SLH+LL  E+
Sbjct: 131 TIKLGGDLGTYVINKQTPLLYLWFSGPCSGPKRYDW-TGKN-WVYSHDGVSLHELLAREL 188

Query: 176 VTIVTSNVDFYSNCSHSGK 194
              + + +D  S+ ++SGK
Sbjct: 189 TEALNTKLDL-SSLAYSGK 206

Promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+); the oligomeric form but not the monomeric form has in vitro ferroxidase activity. May be able to store large amounts of iron in the form of a ferrihydrite mineral by oligomerization. Modulates the RNA-binding activity of ACO1.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9TY03|FRDA_CAEEL Frataxin, mitochondrial OS=Caenorhabditis elegans GN=frh-1 PE=2 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           EYE   + TLE L+DYFD I +     E  DV++  GVLTVN     GTYVIN+Q+PNKQ
Sbjct: 24  EYETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQ 83

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSN-VDF 185
           IWLSSP SGPKRYD +     W Y HD + L  LL  E   I+  + +DF
Sbjct: 84  IWLSSPMSGPKRYDLE-EEGKWTYAHDGEQLDSLLNREFRKILADDRIDF 132

Promotes the biosynthesis of heme as well as the assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+). May be able to store large amounts of the metal in the form of a ferrihydrite mineral by oligomerization.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q54C45|FRDA_DICDI Frataxin, mitochondrial OS=Dictyostelium discoideum GN=fxn PE=3 SV=1

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 81  ICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLS 140
           I +E  E   D  +++ E NT  E  +V   DGVLT+  GN  GTYVIN+QTPN+QIW S
Sbjct: 91  IVDEEFELFVDRLEILSEANT-CEGFEVEGNDGVLTIIVGN-KGTYVINKQTPNRQIWWS 148

Query: 141 SPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTI 178
           SP SGPKR+D+D     W+   D   L  LL  EI T+
Sbjct: 149 SPLSGPKRFDYDSVEKRWVDNRDGTPLRQLLNSEINTL 186

Promotes the biosynthesis of heme as well as the assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+). May be able to store large amounts of the metal in the form of a ferrihydrite mineral by oligomerization.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9ZR07|FRDA_ARATH Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=2 SV=2

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 6/87 (6%)

Query: 82  CNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSS 141
            N  LE + DY D     N  ++  D+ YG+ VLT+  G+  GTYV+N+QTPN+QIW+SS
Sbjct: 89  INHLLEKIEDYGD-----NVQIDGFDIDYGNEVLTLKLGS-LGTYVLNKQTPNRQIWMSS 142

Query: 142 PTSGPKRYDFDPSRNIWIYKHDNKSLH 168
           P SGP R+D+D   N WIY+     LH
Sbjct: 143 PVSGPSRFDWDRDANAWIYRRTEAKLH 169

Promotes the biosynthesis of heme as well as the assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+). May be able to store large amounts of the metal in the form of a ferrihydrite mineral by oligomerization.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|O74831|FRDA_SCHPO Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.03c PE=3 SV=1

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 56  NFTGIHCRNLCSSL-TGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGV 114
           N  G+ CR        G+++  EY  + ++TL+ L D F+ ++EE    ++ D+ Y +GV
Sbjct: 24  NVFGLRCRYYSQVRHNGALTDLEYHRVADDTLDVLNDTFEDLLEE-VGKKDYDIQYANGV 82

Query: 115 LTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEE 174
           +T+  G   GTYVIN+Q P  QIWLSSP SGPK Y++      W    D  +L  +L  E
Sbjct: 83  ITLMLGE-KGTYVINKQPPAHQIWLSSPVSGPKHYEYSLKSKTWCSTRDEGTLLGILSSE 141

Query: 175 IVTIVTSNVDF 185
                +  ++F
Sbjct: 142 FSKWFSRPIEF 152

Promotes the biosynthesis of heme as well as the assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways. May play a role in the protection against iron-catalyzed oxidative stress through its ability to catalyze the oxidation of Fe(2+) to Fe(3+). May be able to store large amounts of the metal in the form of a ferrihydrite mineral by oligomerization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
340712432	210	PREDICTED: frataxin, mitochondrial-like	0.775	0.723	0.540	2e-39
332018995	208	Frataxin-like protein, mitochondrial [Ac	0.795	0.75	0.545	5e-39
350399749	210	PREDICTED: frataxin, mitochondrial-like	0.637	0.595	0.609	1e-38
157133106	215	frataxin, putative [Aedes aegypti] gi|10	0.612	0.558	0.609	1e-38
383847164	208	PREDICTED: frataxin homolog, mitochondri	0.617	0.581	0.604	8e-38
307177345	200	Frataxin-like protein, mitochondrial [Ca	0.596	0.585	0.65	3e-37
170056465	195	frataxin [Culex quinquefasciatus] gi|167	0.602	0.605	0.595	5e-37
322796581	198	hypothetical protein SINV_10149 [Solenop	0.596	0.590	0.658	5e-37
170056463	193	frataxin, mitochondrial [Culex quinquefa	0.602	0.611	0.595	6e-37
347964552	204	AGAP000813-PA [Anopheles gambiae str. PE	0.642	0.617	0.548	1e-36

>gi|340712432|ref|XP_003394764.1| PREDICTED: frataxin, mitochondrial-like [Bombus terrestris]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 105/161 (65%), Gaps = 9/161 (5%)

Query: 42  SHRKTLVQSQDNVLNFTGIHCRNLCSS------LTGSISLPEYEVICNETLESLTDYFDV 95
           SH K      +NV  F       L S+      +T  ++  E+E I +ETL+SLT+YFD 
Sbjct: 46  SHSKKYSNKSNNVKTFNYRLIAYLSSNSSVVFPITQELTPVEFEKISDETLDSLTEYFDE 105

Query: 96  IVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSR 155
           ++E+  HL +ADV+YGDGVLTV FG  HGTYVINRQTPNKQIWLSSP SGPKRYDF   R
Sbjct: 106 LIEQTAHLSDADVSYGDGVLTVKFGTSHGTYVINRQTPNKQIWLSSPKSGPKRYDFINGR 165

Query: 156 NIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR 196
             WIYKHD K+LH+LL  EI  I+    +F   CS SGK R
Sbjct: 166 --WIYKHDGKTLHELLNSEIAAIIKDQTNF-DKCSFSGKER 203

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018995|gb|EGI59534.1| Frataxin-like protein, mitochondrial [Acromyrmex echinatior]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 115/165 (69%), Gaps = 9/165 (5%)

Query: 32  CNSNGIIGHGSHRKTLVQSQDNVLNFTGIHCRNLCSSLTGSISLPEYEVICNETLESLTD 91
            N N I     + +TL+Q   ++ NF+ I  ++L  S   S+   +YE +C+ETL+SLT+
Sbjct: 44  VNHNSIRFSKRNPRTLLQL--SIKNFS-ITTKHLTESELSSV---QYEKVCDETLDSLTE 97

Query: 92  YFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDF 151
           YF+ ++E   HL +ADV+YGDGVLTV FG P+GTYVINRQTPNKQIWLSSP SGPKRYDF
Sbjct: 98  YFEELIEAVVHLPDADVSYGDGVLTVKFGEPYGTYVINRQTPNKQIWLSSPKSGPKRYDF 157

Query: 152 DPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR 196
             S+  WIYKHD K+LH+LL  EI TIV   V F   CS SG+ +
Sbjct: 158 VNSQ--WIYKHDGKTLHELLNHEISTIVKFEVCF-DKCSFSGREK 199

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399749|ref|XP_003485626.1| PREDICTED: frataxin, mitochondrial-like [Bombus impatiens]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 96/128 (75%), Gaps = 3/128 (2%)

Query: 69  LTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVI 128
           +T  ++  E+E I +ETL+SLT+YFD ++E+  HL +ADV+YGDGVLTV FG  +GTYVI
Sbjct: 79  ITQELTPVEFERISDETLDSLTEYFDELIEQAAHLSDADVSYGDGVLTVKFGTSYGTYVI 138

Query: 129 NRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSN 188
           NRQTPNKQIWLSSP SGPKRYDF   R  WIYKHD K+LH+LL  EI  I+ +  +F   
Sbjct: 139 NRQTPNKQIWLSSPKSGPKRYDFINGR--WIYKHDGKTLHELLNSEIAAIIKNQTNF-DK 195

Query: 189 CSHSGKHR 196
           CS SGK R
Sbjct: 196 CSFSGKER 203

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133106|ref|XP_001656178.1| frataxin, putative [Aedes aegypti] gi|108881606|gb|EAT45831.1| AAEL002948-PA [Aedes aegypti]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 97/128 (75%), Gaps = 8/128 (6%)

Query: 65  LCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHG 124
           +  SL  SI+   +E +C++TLESL DYF+ +VEE   L++AD+TYGDGVLTVNFG P+G
Sbjct: 82  IAVSLIDSIT---FEAVCSDTLESLCDYFEQLVEEAAFLKSADITYGDGVLTVNFGEPYG 138

Query: 125 TYVINRQTPNKQIWLSSPTSGPKRYDFDPSRN-----IWIYKHDNKSLHDLLQEEIVTIV 179
           TYVINRQ+PN+QIWLSSP SGPKRYDF P ++      W+YKHD  SLH+LLQ+EI  IV
Sbjct: 139 TYVINRQSPNRQIWLSSPKSGPKRYDFIPDKSKVNEGFWLYKHDGVSLHELLQKEIGVIV 198

Query: 180 TSNVDFYS 187
              VDF S
Sbjct: 199 QKEVDFLS 206

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847164|ref|XP_003699225.1| PREDICTED: frataxin homolog, mitochondrial-like [Megachile rotundata]

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 96/124 (77%), Gaps = 3/124 (2%)

Query: 73  ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQT 132
           +S  ++E + +ETLESLT+YFD ++E+  HL++AD++YGDGVLT+ FG+ +GTYVINRQT
Sbjct: 81  LSPVQFEKVSDETLESLTEYFDELIEKAAHLQDADISYGDGVLTIKFGSKYGTYVINRQT 140

Query: 133 PNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHS 192
           PNKQIWLSSP SGPKRYDF   +  WIYKHD KSLH+LL  EI  I+    +F + CS S
Sbjct: 141 PNKQIWLSSPKSGPKRYDFVNGK--WIYKHDGKSLHELLNNEIPAIIRDQTNF-NKCSFS 197

Query: 193 GKHR 196
           GK R
Sbjct: 198 GKER 201

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177345|gb|EFN66518.1| Frataxin-like protein, mitochondrial [Camponotus floridanus]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 92/120 (76%), Gaps = 3/120 (2%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           +YE IC ETL+SLT+YF+ +VE  THL +ADV+YGDGVLTV FG P+GTYVINRQTPNKQ
Sbjct: 81  QYEKICEETLDSLTEYFEELVETATHLPDADVSYGDGVLTVIFGEPYGTYVINRQTPNKQ 140

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR 196
           IWLSSP SGPKRYDF   +  WIYKHD K+LH+LL  EI  IV +   F   CS  GK++
Sbjct: 141 IWLSSPKSGPKRYDFINGQ--WIYKHDGKTLHELLNNEIPAIVKNQACF-DKCSFGGKNK 197

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056465|ref|XP_001864042.1| frataxin [Culex quinquefasciatus] gi|167876139|gb|EDS39522.1| frataxin [Culex quinquefasciatus]

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 95/126 (75%), Gaps = 8/126 (6%)

Query: 65  LCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHG 124
           + +SL  S++   +E +C++TLESL DYF+ +VEE + L+ ADVTYGDGVLTVN G P+G
Sbjct: 64  IAASLIDSVT---FEAVCSDTLESLCDYFEQLVEETSFLKAADVTYGDGVLTVNLGQPYG 120

Query: 125 TYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNI-----WIYKHDNKSLHDLLQEEIVTIV 179
           TYVINRQ+PN+QIWLSSPTSGPKRYDF P ++      W+YKHD  SLH+LLQ+EI  I 
Sbjct: 121 TYVINRQSPNRQIWLSSPTSGPKRYDFVPDKSTVNEGCWVYKHDGVSLHELLQQEIGAIT 180

Query: 180 TSNVDF 185
              V F
Sbjct: 181 KGEVQF 186

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796581|gb|EFZ19055.1| hypothetical protein SINV_10149 [Solenopsis invicta]

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 90/120 (75%), Gaps = 3/120 (2%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           +YE IC ETL+SLT+ F+ +VE  THL +ADV+YGDGVLTV FG PHGTYVINRQ+PNKQ
Sbjct: 82  QYEKICEETLDSLTECFEELVEATTHLPDADVSYGDGVLTVKFGEPHGTYVINRQSPNKQ 141

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKHR 196
           IWLSSP SGPKRYDF   +  WIYKHD KSLH+LL  EI  IV S   F   CS SG  +
Sbjct: 142 IWLSSPKSGPKRYDFINGQ--WIYKHDRKSLHELLNNEIPAIVRSEACF-DKCSFSGTEK 198

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056463|ref|XP_001864041.1| frataxin, mitochondrial [Culex quinquefasciatus] gi|167876138|gb|EDS39521.1| frataxin, mitochondrial [Culex quinquefasciatus]

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 95/126 (75%), Gaps = 8/126 (6%)

Query: 65  LCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHG 124
           + +SL  S++   +E +C++TLESL DYF+ +VEE + L+ ADVTYGDGVLTVN G P+G
Sbjct: 64  IAASLIDSVT---FEAVCSDTLESLCDYFEQLVEETSFLKAADVTYGDGVLTVNLGQPYG 120

Query: 125 TYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNI-----WIYKHDNKSLHDLLQEEIVTIV 179
           TYVINRQ+PN+QIWLSSPTSGPKRYDF P ++      W+YKHD  SLH+LLQ+EI  I 
Sbjct: 121 TYVINRQSPNRQIWLSSPTSGPKRYDFVPDKSTVNEGCWVYKHDGVSLHELLQQEIGAIT 180

Query: 180 TSNVDF 185
              V F
Sbjct: 181 KGEVQF 186

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964552|ref|XP_311351.5| AGAP000813-PA [Anopheles gambiae str. PEST] gi|333467585|gb|EAA06839.5| AGAP000813-PA [Anopheles gambiae str. PEST]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 99/135 (73%), Gaps = 9/135 (6%)

Query: 65  LCSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHG 124
           + +SL  S++   +  +C++TLESL DYF+ I++E + L+N DVTYGDGVLTV+FG PHG
Sbjct: 63  IATSLIDSVT---FVAVCSDTLESLVDYFEQIIDETSTLKNPDVTYGDGVLTVSFGEPHG 119

Query: 125 TYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNI-----WIYKHDNKSLHDLLQEEIVTIV 179
           TYVINRQ PN+QIWLSSPTSGPKRYDF P +       W+Y+HD  +LH+LLQ EI  IV
Sbjct: 120 TYVINRQLPNRQIWLSSPTSGPKRYDFIPDKRTVNEGYWLYRHDGVTLHELLQREISAIV 179

Query: 180 TSNVDFYSNCSHSGK 194
              ++F++   HS +
Sbjct: 180 GRELEFFA-LPHSQR 193

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
FB|FBgn0030092	190	fh "frataxin homolog" [Drosoph	0.551	0.568	0.621	2.5e-33
UNIPROTKB|I3LTK1	215	FXN "Uncharacterized protein"	0.617	0.562	0.483	1.8e-31
MGI|MGI:1096879	207	Fxn "frataxin" [Mus musculus (	0.668	0.632	0.496	1.4e-30
ZFIN|ZDB-GENE-070209-286	200	fxn "frataxin" [Danio rerio (t	0.943	0.925	0.397	6.2e-30
UNIPROTKB|C9JAX1	135	FXN "Frataxin, mitochondrial"	0.617	0.896	0.491	3.1e-28
UNIPROTKB|Q16595	210	FXN "Frataxin, mitochondrial"	0.617	0.576	0.491	3.1e-28
UNIPROTKB|Q05B87	217	FXN "Frataxin, mitochondrial"	0.617	0.557	0.491	8.2e-28
UNIPROTKB|F1P1P5	122	FXN "Uncharacterized protein"	0.602	0.967	0.520	1.3e-27
UNIPROTKB|A6Q0K4	211	fxn "Frataxin" [Canis lupus fa	0.632	0.587	0.488	1.3e-27
RGD|1565754	208	Fxn "frataxin" [Rattus norvegi	0.668	0.629	0.430	1.4e-25

FB|FBgn0030092 fh "frataxin homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 69/111 (62%), Positives = 84/111 (75%)

Query:    78 YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQI 137
             YE +C++TL++L DYF+ + E  + L+  DV Y DGVLTVN G  HGTYVINRQTPNKQI
Sbjct:    73 YERVCSDTLDALCDYFEELTENASELQGTDVAYSDGVLTVNLGGQHGTYVINRQTPNKQI 132

Query:   138 WLSSPTSGPKRYDF--DPSRNIWIYKHDNKSLHDLLQEEIVTIVTS-NVDF 185
             WLSSPTSGPKRYDF    +   WIYKH  +SLH+LLQ+EI  I+ S +VDF
Sbjct:   133 WLSSPTSGPKRYDFVGTVAAGRWIYKHSGQSLHELLQQEIPGILKSQSVDF 183

GO:0005739 "mitochondrion" evidence=ISS;IMP;NAS

GO:0006879 "cellular iron ion homeostasis" evidence=ISS;NAS

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0034986 "iron chaperone activity" evidence=IDA

GO:0019896 "axon transport of mitochondrion" evidence=IDA

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IDA

UNIPROTKB|I3LTK1 FXN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
 Identities = 60/124 (48%), Positives = 86/124 (69%)

Query:    71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
             GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLT+  G   GTYVIN+
Sbjct:    89 GSLDDTTYERLAEETLDSLAEFFEDLADKPFTFEDYDVSFGSGVLTIKLGGDLGTYVINK 148

Query:   131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
             QTPNKQIWLSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+ T + + +D  S+ +
Sbjct:   149 QTPNKQIWLSSPSSGPKRYDWTGTN--WVYSHDGVSLHELLARELTTALKTKLDL-SSLA 205

Query:   191 HSGK 194
             +SGK
Sbjct:   206 YSGK 209

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IEA

GO:0051349 "positive regulation of lyase activity" evidence=IEA

GO:0051347 "positive regulation of transferase activity" evidence=IEA

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0034986 "iron chaperone activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0019230 "proprioception" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0010722 "regulation of ferrochelatase activity" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0004322 "ferroxidase activity" evidence=IEA

MGI|MGI:1096879 Fxn "frataxin" [Mus musculus (taxid:10090)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/137 (49%), Positives = 95/137 (69%)

Query:    60 IHCRNLCSSLTGSISLPE--YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTV 117
             +H RNL  +L    SL E  YE +  ETL+SL ++F+ + ++   LE+ DV++GDGVLT+
Sbjct:    73 VHLRNL-GTLDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTI 131

Query:   118 NFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVT 177
               G   GTYVIN+QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+  
Sbjct:   132 KLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWT-GKN-WVYSHDGVSLHELLARELTK 189

Query:   178 IVTSNVDFYSNCSHSGK 194
              + + +D  S+ ++SGK
Sbjct:   190 ALNTKLDL-SSLAYSGK 205

GO:0004322 "ferroxidase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006119 "oxidative phosphorylation" evidence=IMP

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=ISO;IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008198 "ferrous iron binding" evidence=ISO

GO:0008199 "ferric iron binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010039 "response to iron ion" evidence=ISO

GO:0010722 "regulation of ferrochelatase activity" evidence=ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=ISO

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=ISO

GO:0019230 "proprioception" evidence=IMP

GO:0019899 "enzyme binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0034986 "iron chaperone activity" evidence=ISO

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045773 "positive regulation of axon extension" evidence=ISO

GO:0046621 "negative regulation of organ growth" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048554 "positive regulation of metalloenzyme activity" evidence=ISO

GO:0051347 "positive regulation of transferase activity" evidence=ISO

GO:0051349 "positive regulation of lyase activity" evidence=ISO

GO:0051353 "positive regulation of oxidoreductase activity" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=ISO

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISO

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

ZFIN|ZDB-GENE-070209-286 fxn "frataxin" [Danio rerio (taxid:7955)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 78/196 (39%), Positives = 111/196 (56%)

Query:     4 CRISSYVSNNVGKCLRQVKCVQSYSRCVCNSNG--IIGHGSHRKTLVQSQDNVLNFTGIH 61
             CR+     ++  KC +Q+  + + S  + + +G   +   +      Q  D +LN   +H
Sbjct:     9 CRLYQLSLSSRWKCYQQISRLSTMSSGLNSISGGRSVSSANICGRHTQCFDRILNKRDLH 68

Query:    62 CRNLCSSLTG----SISLPEYEVICNETLESLTDYFDVIVEEN-THLENADVTYGDGVLT 116
                            IS  EYE +  ETL++L DYF+ + +EN T L+  DV + +GVLT
Sbjct:    69 LSAPLGEEKAHHLREISEAEYERLAEETLDALADYFEDLTDENFTGLDY-DVVFSNGVLT 127

Query:   117 VNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIV 176
             V  G+ HGTYVIN+QTPN+QIWLSSPTSGPKRYD+   R  W+Y HD   LH LL +E+ 
Sbjct:   128 VKVGSDHGTYVINKQTPNRQIWLSSPTSGPKRYDWTGER--WVYTHDAVPLHSLLSKELS 185

Query:   177 TIVTSNVDFYSNCSHS 192
              I  +N+D  S+  HS
Sbjct:   186 IIFKTNIDL-SHLIHS 200

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

UNIPROTKB|C9JAX1 FXN "Frataxin, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 61/124 (49%), Positives = 86/124 (69%)

Query:    71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
             GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct:    13 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 72

Query:   131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
             QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct:    73 QTPNKQIWLSSPSSGPKRYDWT-GKN-WVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 129

Query:   191 HSGK 194
             +SGK
Sbjct:   130 YSGK 133

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0019230 "proprioception" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

UNIPROTKB|Q16595 FXN "Frataxin, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 61/124 (49%), Positives = 86/124 (69%)

Query:    71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
             GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct:    88 GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 147

Query:   131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
             QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct:   148 QTPNKQIWLSSPSSGPKRYDWT-GKN-WVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 204

Query:   191 HSGK 194
             +SGK
Sbjct:   205 YSGK 208

GO:0006811 "ion transport" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0019230 "proprioception" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004322 "ferroxidase activity" evidence=IDA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IDA

GO:0051349 "positive regulation of lyase activity" evidence=IMP;IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IMP

GO:0005759 "mitochondrial matrix" evidence=ISS;NAS

GO:0008198 "ferrous iron binding" evidence=IDA

GO:0008199 "ferric iron binding" evidence=IDA

GO:0016540 "protein autoprocessing" evidence=IDA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IDA

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

GO:0006783 "heme biosynthetic process" evidence=NAS

GO:0010039 "response to iron ion" evidence=IMP

GO:0034986 "iron chaperone activity" evidence=IDA

GO:0010722 "regulation of ferrochelatase activity" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0051347 "positive regulation of transferase activity" evidence=IMP

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IMP

UNIPROTKB|Q05B87 FXN "Frataxin, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 61/124 (49%), Positives = 85/124 (68%)

Query:    71 GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
             G++    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct:    89 GTLDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 148

Query:   131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
             QTPNKQIWLSSP+SGPKRYD+   RN W+Y HD  SLH+LL  E+   + + +D  S  +
Sbjct:   149 QTPNKQIWLSSPSSGPKRYDWT-GRN-WVYSHDGVSLHELLATELTQALKTKLDL-SALA 205

Query:   191 HSGK 194
             +SGK
Sbjct:   206 YSGK 209

GO:0005739 "mitochondrion" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IEA

GO:0051349 "positive regulation of lyase activity" evidence=IEA

GO:0051347 "positive regulation of transferase activity" evidence=IEA

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0034986 "iron chaperone activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0019230 "proprioception" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0010722 "regulation of ferrochelatase activity" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

UNIPROTKB|F1P1P5 FXN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/123 (52%), Positives = 84/123 (68%)

Query:    74 SLPE--YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQ 131
             SL E  YE +  ETL+SL D+F+ + ++    E+ DV+ G GVLTV  G   GTYVIN+Q
Sbjct:     2 SLDETTYEKLAEETLDSLADFFEDLTDKPFTPEDYDVSLGSGVLTVKLGGDMGTYVINKQ 61

Query:   132 TPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSH 191
             TPN+QIWLSSPTSGPKRYD+   RN W+Y HD  SLH+LL +E    + + +D  S+  +
Sbjct:    62 TPNRQIWLSSPTSGPKRYDWT-GRN-WVYSHDRVSLHELLSKEFSAALKTKLDL-SSLIY 118

Query:   192 SGK 194
             SGK
Sbjct:   119 SGK 121

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEA

GO:0010722 "regulation of ferrochelatase activity" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0019230 "proprioception" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0034986 "iron chaperone activity" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IEA

GO:0051347 "positive regulation of transferase activity" evidence=IEA

GO:0051349 "positive regulation of lyase activity" evidence=IEA

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

UNIPROTKB|A6Q0K4 fxn "Frataxin" [Canis lupus familiaris (taxid:9615)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 62/127 (48%), Positives = 85/127 (66%)

Query:    68 SLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYV 127
             S  GS+    YE +   TL+SL ++F+ + ++   LE+ DV++G GVLTV  G   GTYV
Sbjct:    86 SSPGSLDETTYERLAETTLDSLAEFFEDLADKPYTLEDYDVSFGSGVLTVKLGGDLGTYV 145

Query:   128 INRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYS 187
             IN+QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+       +D  S
Sbjct:   146 INKQTPNKQIWLSSPSSGPKRYDWT-GKN-WVYSHDGVSLHELLATELTKAFKIKLDL-S 202

Query:   188 NCSHSGK 194
             + ++SGK
Sbjct:   203 SLAYSGK 209

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IEA

GO:0051349 "positive regulation of lyase activity" evidence=IEA

GO:0051347 "positive regulation of transferase activity" evidence=IEA

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0034986 "iron chaperone activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0019230 "proprioception" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0010722 "regulation of ferrochelatase activity" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0004322 "ferroxidase activity" evidence=IEA

RGD|1565754 Fxn "frataxin" [Rattus norvegicus (taxid:10116)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 59/137 (43%), Positives = 88/137 (64%)

Query:    60 IHCRNLCSSLTGSISLPE--YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTV 117
             +H RN   +L    SL E  YE +  ETL++L ++F+ + ++   L++ DV++GDGVLT+
Sbjct:    74 VHLRN-SGTLGNPSSLDETAYERLAEETLDALAEFFEDLADKPYTLKDYDVSFGDGVLTI 132

Query:   118 NFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVT 177
               G   GTYVIN+QTP   +W S P SGPKRYD+   +N W+Y HD  SLH+LL  E+  
Sbjct:   133 KLGGDLGTYVINKQTPLLYLWFSGPCSGPKRYDWT-GKN-WVYSHDGVSLHELLARELTE 190

Query:   178 IVTSNVDFYSNCSHSGK 194
              + + +D  S+ ++SGK
Sbjct:   191 ALNTKLDL-SSLAYSGK 206

GO:0004322 "ferroxidase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=ISO;NAS

GO:0007005 "mitochondrion organization" evidence=IEA;ISO

GO:0007628 "adult walking behavior" evidence=IEA;ISO

GO:0008198 "ferrous iron binding" evidence=IEA;ISO

GO:0008199 "ferric iron binding" evidence=IEA;ISO

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0009060 "aerobic respiration" evidence=IEA;ISO

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA;ISO

GO:0010039 "response to iron ion" evidence=IEA;ISO

GO:0010722 "regulation of ferrochelatase activity" evidence=IEA;ISO

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016226 "iron-sulfur cluster assembly" evidence=ISO

GO:0016530 "metallochaperone activity" evidence=NAS

GO:0016540 "protein autoprocessing" evidence=IEA;ISO

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA;ISO

GO:0019230 "proprioception" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=IPI

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0034986 "iron chaperone activity" evidence=IEA;ISO

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0045773 "positive regulation of axon extension" evidence=IMP

GO:0046621 "negative regulation of organ growth" evidence=IEA;ISO

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IEA;ISO

GO:0051347 "positive regulation of transferase activity" evidence=IEA;ISO

GO:0051349 "positive regulation of lyase activity" evidence=IEA;ISO

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=ISO

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA;ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA;ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D3ZYW7	FRDA_RAT	1, ., 1, 6, ., 3, ., 1	0.3567	0.9336	0.8798	yes	N/A
O35943	FRDA_MOUSE	1, ., 1, 6, ., 3, ., 1	0.4963	0.6683	0.6328	yes	N/A
Q9TY03	FRDA_CAEEL	1, ., 1, 6, ., 3, ., 1	0.5090	0.5510	0.7941	yes	N/A
O74831	FRDA_SCHPO	1, ., 1, 6, ., 3, ., 1	0.3511	0.6530	0.8101	yes	N/A
Q16595	FRDA_HUMAN	1, ., 1, 6, ., 3, ., 1	0.4676	0.6734	0.6285	yes	N/A
Q9W385	FRDA_DROME	1, ., 1, 6, ., 3, ., 1	0.6216	0.5510	0.5684	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.16.3.1	0.914
3rd Layer	1.16.3	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	196
TIGR03422	97	TIGR03422, mito_frataxin, frataxin	9e-46
pfam01491	107	pfam01491, Frataxin_Cyay, Frataxin-like domain	2e-39
cd00503	105	cd00503, Frataxin, Frataxin is a nuclear-encoded m	1e-36
TIGR03421	102	TIGR03421, FeS_CyaY, iron donor protein CyaY	2e-19
COG1965	106	COG1965, CyaY, Protein implicated in iron transpor	4e-19
PRK00446	105	PRK00446, cyaY, frataxin-like protein; Provisional	2e-07
PRK01379	103	PRK01379, cyaY, frataxin-like protein; Provisional	8e-07

>gnl|CDD|132463 TIGR03422, mito_frataxin, frataxin

 Score =  145 bits (369), Expect = 9e-46
 Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           EY  + +E L+ L D  + + E    L+  DV Y  GVLT+      GTYVIN+Q PNKQ
Sbjct: 1   EYHKVADEYLDHLLDKLEELGESRPDLD-FDVEYSSGVLTLELP-SVGTYVINKQPPNKQ 58

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEI 175
           IWLSSP SGPKRYD+      WIY  D  SL +LL+EE+
Sbjct: 59  IWLSSPVSGPKRYDYV--NGEWIYLRDGSSLTELLEEEL 95

Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately. Length = 97

>gnl|CDD|216529 pfam01491, Frataxin_Cyay, Frataxin-like domain

 Score =  129 bits (328), Expect = 2e-39
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 6/109 (5%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  + +ETL+S+ D  + + +E+    + DV    GVLT+ F N  G  VIN+Q P KQ
Sbjct: 5   EFHQLADETLDSIEDALEELADESD--ADIDVERSGGVLTLTFEN-GGQIVINKQPPLKQ 61

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185
           IWL+SP SG   +D+D     WI   D + L +LL EE+       VDF
Sbjct: 62  IWLASP-SGGFHFDYD--GGQWIDTRDGEELFELLSEELSEQAGEPVDF 107

This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport. Length = 107

>gnl|CDD|238280 cd00503, Frataxin, Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet

 Score =  122 bits (309), Expect = 1e-36
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  + ++ L  + D      EE     + DV    GVLT+ FGN   T VINRQ P +Q
Sbjct: 5   EFHRLADDLLLKIEDTL----EEQDDDADIDVETQGGVLTLTFGN-GSTIVINRQEPLRQ 59

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185
           IWL+S   G   +D+   +  WI     + L +LL+EE       +V+F
Sbjct: 60  IWLASK-VGGYHFDYKNGK--WICTRSGEELWELLEEECSAQSGEDVEF 105

Length = 105

>gnl|CDD|163255 TIGR03421, FeS_CyaY, iron donor protein CyaY

 Score = 78.8 bits (195), Expect = 2e-19
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  +    L+++ +  D          + D     GVLT+ F N     +IN+Q P  Q
Sbjct: 4   EFHQLAEALLDAIEEAID------DADADIDCERAGGVLTLTFEN-GSQIIINKQEPLHQ 56

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185
           IWL++  SG   +D+D     WI   D + L  LL           V F
Sbjct: 57  IWLAAK-SGGFHFDYD--GGAWIDTRDGEELWALLARACSEQAGEPVVF 102

Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 102

>gnl|CDD|224876 COG1965, CyaY, Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]

 Score = 78.2 bits (193), Expect = 4e-19
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  + +  L  + D  D   +E     + D     GVLT+ F N     +IN+Q P +Q
Sbjct: 5   EFHRLADALLLKIEDQLDEQDDEG----DIDCEIQGGVLTLTFDN-GSQIIINKQEPLQQ 59

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEE 174
           IWL+S   G   Y FD     WI     +   DLL+E 
Sbjct: 60  IWLASKVGG---YHFDYKNGEWISTRSGEEFWDLLEEA 94

Length = 106

>gnl|CDD|234765 PRK00446, cyaY, frataxin-like protein; Provisional

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 113 GVLTVNFGNPHGT-YVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLL 171
           GVLT+ F N  G+  +INRQ P  ++WL++ + G   + FD     WI     +    LL
Sbjct: 36  GVLTLTFEN--GSKIIINRQEPLHELWLAAKSGG---FHFDYKDGEWICDRSGEEFWALL 90

Query: 172 QEEI 175
           +E  
Sbjct: 91  EEAA 94

Length = 105

>gnl|CDD|134546 PRK01379, cyaY, frataxin-like protein; Provisional

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  I   T+  + D     +EE     + DV     +L  N     G YVIN+Q+  K+
Sbjct: 5   EFSKIAETTIAYIADK----IEEQDKEASIDVDLQGDIL--NLDTDKGIYVINKQSAAKE 58

Query: 137 IWLSSPTSGPKRYDFD 152
           IWLSSP SGP  + ++
Sbjct: 59  IWLSSPVSGPYHFFYE 74

Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PRK00446	105	cyaY frataxin-like protein; Provisional	100.0
PF01491	109	Frataxin_Cyay: Frataxin-like domain; InterPro: IPR	100.0
cd00503	105	Frataxin Frataxin is a nuclear-encoded mitochondri	100.0
TIGR03421	102	FeS_CyaY iron donor protein CyaY. Members of this	100.0
KOG3413|consensus	156		100.0
PRK01379	103	cyaY frataxin-like protein; Provisional	100.0
COG1965	106	CyaY Protein implicated in iron transport, frataxi	100.0
TIGR03422	97	mito_frataxin frataxin. Frataxin is a mitochondria	100.0

>PRK00446 cyaY frataxin-like protein; Provisional

Probab=100.00  E-value=1.9e-41  Score=261.97  Aligned_cols=104  Identities=25%  Similarity=0.485  Sum_probs=98.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      |||.+||++||++|+.|+++||++ .    +.|+|++++||||||+|++ +|+||||||+|++||||||| |||+||+|.
T Consensus         1 m~e~ef~~~ad~~l~~ie~~ld~~-~----~~d~D~e~~~gVLti~f~~-~~~~VINkQ~p~~QIWlas~-sG~~hf~~~   73 (105)
T PRK00446          1 MNDSEFHQLADALWQAIEEQLDDD-G----DADIDCERNGGVLTLTFEN-GSKIIINRQEPLHELWLAAK-SGGFHFDYK   73 (105)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhc-c----CCCeeeeccCCEEEEEECC-CCEEEEeCCCchhheeEecC-CCCccceec
Confidence            899999999999999999999975 2    2679999999999999996 99999999999999999999 999999998


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      ++  +|+++|+|.+|+++|++|+++++|++|.|
T Consensus        74 ~~--~W~~~r~g~~L~~~L~~~~~~~~g~~v~f  104 (105)
T PRK00446         74 DG--EWICDRSGEEFWALLEEAATQQAGEPVSF  104 (105)
T ss_pred             CC--eEEECCCCcHHHHHHHHHHHHHcCCceec
Confidence            66  99999999999999999999999999998

>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences

Probab=100.00  E-value=8.6e-42  Score=264.26  Aligned_cols=108  Identities=42%  Similarity=0.770  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      ||+.+||++||++|+.|+++||++.|+  ..+|+|++++||||||+|++ +|+||||||+|++|||||||+|||+||+|+
T Consensus         1 Mt~~~f~~lad~~l~~i~~~le~~~d~--~~~d~d~e~~~gVLti~~~~-~~~~VINkQ~p~~QIWlsSpisG~~hf~~~   77 (109)
T PF01491_consen    1 MTESEFHQLADETLDSIEDALEELDDE--QDADIDVERSGGVLTIEFPD-GGQYVINKQPPNRQIWLSSPISGPFHFDYD   77 (109)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHTCTTS--SSSTEEEEEETTEEEEEETT-SEEEEEEEECCCTEEEEEETTTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEccCCEEEEEECC-CCEEEEeCCCHHHHHHHhcccCCceEEEEc
Confidence            899999999999999999999998775  34789999999999999985 999999999999999999999999999999


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      ++  +|+++|+|++|+++|++||.+++|.+|+|
T Consensus        78 ~~--~W~~~r~g~~l~~~L~~el~~~~g~~v~~  108 (109)
T PF01491_consen   78 DG--KWIDTRDGEELFELLEEELSQQLGEPVDF  108 (109)
T ss_dssp             SS--SEEETTTTEBHHHHHHHHHHHHHTS---T
T ss_pred             CC--EEEECCCCchHHHHHHHHHHHHhCCCeee
Confidence            65  99999999999999999999999999988

Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....

>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet

Probab=100.00  E-value=2.2e-41  Score=261.16  Aligned_cols=105  Identities=33%  Similarity=0.589  Sum_probs=99.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      |+|.+||++||++|+.|+++||+..+    ..|+|++++||||||+|++ +|+||||||+|+||||||||+ ||+||+|+
T Consensus         1 M~d~~f~~~ad~~l~~i~~~ld~~~~----~~d~D~e~~~gVLti~f~~-~~~~VINkQ~p~~QIWlaSp~-G~~hf~~~   74 (105)
T cd00503           1 MNESEFHRLADDLLLKIEDTLEEQDD----DADIDVETQGGVLTLTFGN-GSTIVINRQEPLRQIWLASKV-GGYHFDYK   74 (105)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCc----ccCEeeeccCCEEEEEECC-CCEEEEeCCchhhhhheecCC-CCccceec
Confidence            89999999999999999999997643    3789999999999999995 999999999999999999996 99999999


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      ++  +|+++|+|.+|+++|++||++++|++|.|
T Consensus        75 ~~--~W~~~r~g~~L~~~L~~e~~~~~g~~v~f  105 (105)
T cd00503          75 NG--KWICTRSGEELWELLEEECSAQSGEDVEF  105 (105)
T ss_pred             CC--EEEECCCCChHHHHHHHHHHHHhCCcccC
Confidence            76  99999999999999999999999999986

>TIGR03421 FeS_CyaY iron donor protein CyaY

Probab=100.00  E-value=1.5e-40  Score=255.71  Aligned_cols=102  Identities=29%  Similarity=0.508  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcC
Q psy10962         74 SLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDP  153 (196)
Q Consensus        74 te~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~  153 (196)
                      +|.+||++||++|+.|+++||+      .+.|+|++++||||||+|++ +|+||||||+|+|||||||| |||+||+|++
T Consensus         1 ~d~ef~~~ad~~l~~ie~~ld~------~~~d~D~e~~~gVLti~f~~-~~~~VINkQ~p~~QIWlasp-sG~~hF~~~~   72 (102)
T TIGR03421         1 NESEFHQLAEALLDAIEEAIDD------ADADIDCERAGGVLTLTFEN-GSQIIINKQEPLHQIWLAAK-SGGFHFDYDG   72 (102)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc------cCCCeeeecCCCEEEEEECC-CCEEEEeCCchhhhheeecC-CCCccceecC
Confidence            6899999999999999999984      23689999999999999995 99999999999999999999 9999999987


Q ss_pred             CCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        154 SRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       154 ~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      +  +|+++|+|.+|+++|++||++++|++|.|
T Consensus        73 ~--~Wi~~r~g~~l~~~L~~~~~~~~g~~v~f  102 (102)
T TIGR03421        73 G--AWIDTRDGEELWALLARACSEQAGEPVVF  102 (102)
T ss_pred             C--EEEECCCCcHHHHHHHHHHHHHhCCcccC
Confidence            6  99999999999999999999999999876

Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.

>KOG3413|consensus

Probab=100.00  E-value=7.4e-40  Score=266.11  Aligned_cols=126  Identities=47%  Similarity=0.769  Sum_probs=112.3

Q ss_pred             ccCccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccc
Q psy10962         57 FTGIHCRNLC-SSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNK  135 (196)
Q Consensus        57 ~~~~~~r~~~-~~~~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~r  135 (196)
                      .+..+||-+. +.....+++.+||++||+||+.|.|+||++.|+.+ ..++||++++|||||++++ .|||||||||||+
T Consensus        25 ~~~~~~~~~~~~~~~~~~t~~~YhrlAddTLd~L~d~fEdl~e~~~-~~~~Dv~y~~GVLTl~lg~-~GTYViNKQ~Pnk  102 (156)
T KOG3413|consen   25 IFLENFVMSSKLFHSGILTRLEYHRLADDTLDHLSDYFEDLAEEVP-GEGFDVDYADGVLTLKLGS-VGTYVINKQPPNK  102 (156)
T ss_pred             HHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccccccccceEEEEecC-ceeEEecCCCCcc
Confidence            3445555333 23456789999999999999999999999999853 4789999999999999995 9999999999999


Q ss_pred             eeeeccCCCCCcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCC-cEEE
Q psy10962        136 QIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTS-NVDF  185 (196)
Q Consensus       136 QIWLSSPiSGp~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~-~v~f  185 (196)
                      |||||||+|||+||||.. .+.||+.|+|..|+++|++|+.++++. +|+|
T Consensus       103 QIWlSSP~SGPkryD~~~-~~~Wiy~r~g~sL~~lL~eEl~k~~s~~~i~~  152 (156)
T KOG3413|consen  103 QIWLSSPVSGPKRYDLCR-AGEWIYLRDGTSLHELLEEELRKILSKMPIDF  152 (156)
T ss_pred             eeeeeCCCCCCccccccc-cCceEEecCCccHHHHHHHHHHHHHhhCccch
Confidence            999999999999999997 469999999999999999999999999 8999

>PRK01379 cyaY frataxin-like protein; Provisional

Probab=100.00  E-value=9.7e-40  Score=252.10  Aligned_cols=101  Identities=28%  Similarity=0.523  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      |+|+|||++||++|+.|+++||+.    +.+.++|+++++|||||+|+  +|+||||||+|+||||||||+|||+||+|+
T Consensus         1 M~~~ef~~lad~~L~~ie~~ie~~----~~d~d~D~e~~~gVLtl~~~--~gt~VINkQ~p~~QIWlASp~sG~~hF~y~   74 (103)
T PRK01379          1 MNNSEFSKIAETTIAYIADKIEEQ----DKEASIDVDLQGDILNLDTD--KGIYVINKQSAAKEIWLSSPVSGPYHFFYE   74 (103)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhc----CCCcceeeeccCCEEEEEeC--CcEEEEeCCChhhhheeecccCCCcceecC
Confidence            899999999999999999999963    23467999999999999996  477999999999999999999999999998


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCc
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSN  182 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~  182 (196)
                      ++  +|+ +|+|.+|+++|++||++++|+.
T Consensus        75 ~g--~W~-~r~g~el~~~L~~e~~~~~~~~  101 (103)
T PRK01379         75 QG--KWK-NRAGLELMAILTEELNIKFDTR  101 (103)
T ss_pred             CC--eeE-ECCCchHHHHHHHHHHHHhCcC
Confidence            76  999 8999999999999999999864

>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-39  Score=250.34  Aligned_cols=105  Identities=30%  Similarity=0.563  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      |++++||++||++|..|+|.||+..++    .|+|++..||||||+|++ +|+||||||+|++|||||||++| +||+|.
T Consensus         1 mn~~efh~lad~~~~~Ied~le~~~~~----~d~D~d~qg~VlTl~f~n-gs~iiINkQ~P~~qiWlAs~~gG-~HF~y~   74 (106)
T COG1965           1 MNESEFHRLADALLLKIEDQLDEQDDE----GDIDCEIQGGVLTLTFDN-GSQIIINKQEPLQQIWLASKVGG-YHFDYK   74 (106)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhccC----CCcceecCCCEEEEEECC-CcEEEEeCCChHHHHHhhccCCC-ceeEee
Confidence            899999999999999999999987554    679999999999999996 99999999999999999999766 999999


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      .+  .|+++|+|.+|+.+|++|+++++|++|.|
T Consensus        75 ~g--~W~~~rsg~~f~~~L~e~~~~~~~~~v~f  105 (106)
T COG1965          75 NG--EWISTRSGEEFWDLLEEALSAQSGEDVEF  105 (106)
T ss_pred             CC--EEEECCCCCcHHHHHHHHHHHHcCCCcCc
Confidence            86  99999999999999999999999999987

>TIGR03422 mito_frataxin frataxin

Probab=100.00  E-value=2.6e-39  Score=247.05  Aligned_cols=97  Identities=49%  Similarity=0.826  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEcCCCC
Q psy10962         77 EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRN  156 (196)
Q Consensus        77 eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~~~~~  156 (196)
                      |||++||++|+.|+++||++.|. +.+.++|++++||||||+|++ +||||||||+|+||||||||+|||+||+|+++  
T Consensus         1 ef~~~ad~~L~~ie~~le~~~d~-~~d~~~D~e~~~gVLti~~~~-~~~~VINkQ~p~~QIWlsSp~sGp~hfd~~~~--   76 (97)
T TIGR03422         1 EYHKVADEYLDHLLDKLEELGES-RPDLDFDVEYSSGVLTLELPS-VGTYVINKQPPNKQIWLSSPVSGPKRYDYVNG--   76 (97)
T ss_pred             ChHHHHHHHHHHHHHHHHhhccc-ccccccccccCCCEEEEEECC-CCEEEEeCCChhhHHheecCCCCCcceeecCC--
Confidence            69999999999999999987665 222334999999999999985 99999999999999999999999999999876  


Q ss_pred             ceEEcCCCccHHHHHHHHHHh
Q psy10962        157 IWIYKHDNKSLHDLLQEEIVT  177 (196)
Q Consensus       157 ~Wi~tRdg~eL~~lLs~Els~  177 (196)
                      +|+++|+|.+|+++|++||++
T Consensus        77 ~Wi~~r~g~~L~~~L~~e~~~   97 (97)
T TIGR03422        77 EWIYLRDGSSLTELLEEELSK   97 (97)
T ss_pred             EEEECCCCChHHHHHHHHHcC
Confidence            999999999999999999864

Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1ekg_A	127	Mature Human Frataxin Length = 127		6e-30
3s4m_A	129	Crystal Structure Of Wild-Type Human Frataxin Lengt		8e-30
3t3j_A	129	1.70 A Structure Of Friedreich's Ataxia Frataxin Va		3e-29
1ly7_A	121	The Solution Structure Of The The C-Terminal Domain		3e-29
3t3k_A	129	1.24 A Structure Of Friedreich's Ataxia Frataxin Va		3e-29
3t3l_A	129	1.15 A Structure Of Human Frataxin Variant Q153a Le		4e-29
3t3t_A	129	1.38 A Structure Of Human Frataxin Variant Q148g Le		6e-29
3s5f_A	129	Crystal Structure Of Human Frataxin Variant W155f L		1e-28
3t3x_A	129	1.57 A Structure Of Friedreich's Ataxia Frataxin Va		2e-28
3s5d_A	129	Crystal Structure Of Human Frataxin Variant W155a L		3e-28
3s5e_A	129	Crystal Structure Of Human Frataxin Variant W155r,		4e-28
2fql_A	123	Crystal Structure Of Trimeric Frataxin From The Yea		7e-12
2ga5_A	123	Yeast Frataxin Length = 123		8e-12
1soy_A	108	Solution Structure Of The Bacterial Frataxin Orthol		3e-05
1ew4_A	106	Crystal Structure Of Escherichia Coli Cyay Protein		3e-05

>pdb|1EKG|A Chain A, Mature Human Frataxin Length = 127

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 5   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 64
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQIWLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 65  QTPNKQIWLSSPSSGPKRYDW-TGKN-WVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 121
Query: 191 HSGK 194
           +SGK
Sbjct: 122 YSGK 125

>pdb|3S4M|A Chain A, Crystal Structure Of Wild-Type Human Frataxin Length = 129

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQIWLSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3T3J|A Chain A, 1.70 A Structure Of Friedreich's Ataxia Frataxin Variant N146k Length = 129

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVI +
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVIKK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQIWLSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|1LY7|A Chain A, The Solution Structure Of The The C-Terminal Domain Of Frataxin, The Protein Responsible For Friedreich Ataxia Length = 121

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
Query: 78  YEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQI 137
           YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+QTPNKQI
Sbjct: 6   YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 65
Query: 138 WLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGK 194
           WLSSP+SGPKRYD+   +N W+Y HD  SLH+LL  E+   + + +D  S+ ++SGK
Sbjct: 66  WLSSPSSGPKRYDW-TGKN-WVYSHDGVSLHELLAAELTKALKTKLDL-SSLAYSGK 119

>pdb|3T3K|A Chain A, 1.24 A Structure Of Friedreich's Ataxia Frataxin Variant Q148r Length = 129

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           +TPNKQIWLSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  RTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3T3L|A Chain A, 1.15 A Structure Of Human Frataxin Variant Q153a Length = 129

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNK IWLSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKAIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3T3T|A Chain A, 1.38 A Structure Of Human Frataxin Variant Q148g Length = 129

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
            TPNKQIWLSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  GTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3S5F|A Chain A, Crystal Structure Of Human Frataxin Variant W155f Length = 129

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQI+LSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKQIFLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3T3X|A Chain A, 1.57 A Structure Of Friedreich's Ataxia Frataxin Variant R165c Length = 129

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQIWLSSP+SGPK YD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKQIWLSSPSSGPKCYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3S5D|A Chain A, Crystal Structure Of Human Frataxin Variant W155a Length = 129

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQI LSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKQIALSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|3S5E|A Chain A, Crystal Structure Of Human Frataxin Variant W155r, One Of The Friedreich's Ataxia Point Mutations Length = 129

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 71  GSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINR 130
           GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+
Sbjct: 7   GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINK 66
Query: 131 QTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCS 190
           QTPNKQI LSSP+SGPKRYD+  +   W+Y HD  SLH+LL  E+   + + +D  S+ +
Sbjct: 67  QTPNKQIRLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLA 123
Query: 191 HSGK 194
           +SGK
Sbjct: 124 YSGK 127

>pdb|2FQL|A Chain A, Crystal Structure Of Trimeric Frataxin From The Yeast Saccharomyces Cerevisiae Length = 123

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 87  ESLTDYFDVIVEENTHLENA------DVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLS 140
           E   DY D +++    L  A      DV    GV+T+      GTYVIN+Q PNKQIWL+
Sbjct: 24  EEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPA-FGTYVINKQPPNKQIWLA 82
Query: 141 SPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSN 182
           SP SGP R+D       W+   +   L D+L EE+   ++ +
Sbjct: 83  SPLSGPNRFDL--LNGEWVSLRNGTKLTDILTEEVEKAISKS 122

>pdb|2GA5|A Chain A, Yeast Frataxin Length = 123

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 87  ESLTDYFDVIVEENTHLENA------DVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLS 140
           E   DY D +++    L  A      DV    GV+T+      GTYVIN+Q PNKQIWL+
Sbjct: 24  EEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPA-FGTYVINKQPPNKQIWLA 82
Query: 141 SPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSN 182
           SP SGP R+D       W+   +   L D+L EE+   ++ +
Sbjct: 83  SPLSGPNRFDL--LNGEWVSLRNGTKLTDILTEEVEKAISKS 122

>pdb|1SOY|A Chain A, Solution Structure Of The Bacterial Frataxin Orthologue, Cyay Length = 108

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 113 GVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQ 172
           GVLT+ F N     +INRQ P  Q+WL++   G   Y FD   + WI     ++  DLL+
Sbjct: 39  GVLTITFENG-SKIIINRQEPLHQVWLATKQGG---YHFDLKGDEWICDRSGETFWDLLE 94
Query: 173 EEIVTIVTSNVDF 185
           +         V F
Sbjct: 95  QAATQQAGETVSF 107

>pdb|1EW4|A Chain A, Crystal Structure Of Escherichia Coli Cyay Protein Reveals A Novel Fold For The Frataxin Family Length = 106

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 113 GVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQ 172
           GVLT+ F N     +INRQ P  Q+WL++   G   Y FD   + WI     ++  DLL+
Sbjct: 37  GVLTITFENG-SKIIINRQEPLHQVWLATKQGG---YHFDLKGDEWICDRSGETFWDLLE 92
Query: 173 EEIVTIVTSNVDF 185
           +         V F
Sbjct: 93  QAATQQAGETVSF 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
3t3l_A	129	Frataxin, mitochondrial; Fe-S cluster biosynthesis	5e-41
3oeq_A	123	Frataxin homolog, mitochondrial; alpha/beta sandwi	6e-34
1ew4_A	106	CYAY protein; friedreich ataxia, frataxin family,	2e-32

>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A Length = 129

 Score =  134 bits (338), Expect = 5e-41
 Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 70  TGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVIN 129
            GS+    YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN
Sbjct: 6   PGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVIN 65

Query: 130 RQTPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNC 189
           +QTPNK IWLSSP+SGPKRYD+      W+Y HD  SLH+LL  E+   + + +D  S+ 
Sbjct: 66  KQTPNKAIWLSSPSSGPKRYDWTGKN--WVYSHDGVSLHELLAAELTKALKTKLDL-SSL 122

Query: 190 SHSGK 194
           ++SGK
Sbjct: 123 AYSGK 127

>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} PDB: 2fql_A 3oer_A 2ga5_A Length = 123

 Score =  116 bits (291), Expect = 6e-34
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 72  SISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQ 131
           ++ L +     ++ L+ L D  + + E +      DV    GV+T+      GTYVIN+Q
Sbjct: 16  NLPLEKAHEEADDYLDHLLDSLEELSEAHPDCI-PDVELSHGVMTLEIPA-FGTYVINKQ 73

Query: 132 TPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEI 175
            PNKQIWL+SP SGP R+D       W+   +   L D+L EE+
Sbjct: 74  PPNKQIWLASPLSGPNRFDLLNGE--WVSLRNGTKLTDILTEEV 115

>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A Length = 106

 Score =  111 bits (280), Expect = 2e-32
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  + ++   ++ +  D    +     + D     GVLT+ F N     +INRQ P  Q
Sbjct: 5   EFHRLADQLWLTIEERLDDWDGD----SDIDCEINGGVLTITFEN-GSKIIINRQEPLHQ 59

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185
           +WL++   G   +D       WI     ++  DLL++         V F
Sbjct: 60  VWLATK-QGGYHFDLKGDE--WICDRSGETFWDLLEQAATQQAGETVSF 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3t3l_A	129	Frataxin, mitochondrial; Fe-S cluster biosynthesis	100.0
1ew4_A	106	CYAY protein; friedreich ataxia, frataxin family,	100.0
3oeq_A	123	Frataxin homolog, mitochondrial; alpha/beta sandwi	100.0

>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A

Probab=100.00  E-value=9.4e-47  Score=299.75  Aligned_cols=123  Identities=48%  Similarity=0.884  Sum_probs=112.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcce
Q psy10962         70 TGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRY  149 (196)
Q Consensus        70 ~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hF  149 (196)
                      .+.|++.|||++||++|+.|+++||++.|+...+.|+||++++|||||+|++++|+||||||+|+||||||||+|||+||
T Consensus         6 ~~~m~e~ef~~lad~~L~~ie~~le~~~d~~~~~~d~D~e~~~gVLti~f~~~~g~~VINkQ~P~~QIWLASp~SGp~hf   85 (129)
T 3t3l_A            6 PGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKAIWLSSPSSGPKRY   85 (129)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHTSTTSCTTCEEEEETTEEEEECCTTCCEEEEEEETTTTEEEEECSSSCCEEE
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeecCCCEEEEEEcCCCCEEEEeCCchhhHhheeCCCCCCeee
Confidence            57899999999999999999999999887633457999999999999999734999999999999999999999999999


Q ss_pred             eEcCCCCceEEcCCCccHHHHHHHHHHhhcCCcEEEeeccccCCCC
Q psy10962        150 DFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGKH  195 (196)
Q Consensus       150 dy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f~~~~~~~~~~  195 (196)
                      +|+++  +|+++|+|.+|+++|++||++++|++|+| .+|||+|+-
T Consensus        86 d~~~~--~Wi~~rdg~~L~~~L~~el~~~~g~~v~~-~~l~~~~~~  128 (129)
T 3t3l_A           86 DWTGK--NWVYSHDGVSLHELLAAELTKALKTKLDL-SSLAYSGKD  128 (129)
T ss_dssp             EECSS--SEEETTTCCBHHHHHHHHHHHHHTSCCCC-TTSTTCSSC
T ss_pred             EecCC--EEEECCCCchHHHHHHHHHHHHhCCceee-eecccCCCC
Confidence            99987  89999999999999999999999999999 999999973

>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A

Probab=100.00  E-value=3.6e-42  Score=265.01  Aligned_cols=105  Identities=25%  Similarity=0.489  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      ||+.+||++||++|+.|+++||++.    .+.|+|++++||||||+|++ +|+||||||+|+||||||||+|| +||+|+
T Consensus         1 m~~~ef~~lad~~l~~ie~~le~~~----~~~d~D~e~~~gVLti~f~~-~~~~VINkQ~P~~QIWlaSp~sG-~hfd~~   74 (106)
T 1ew4_A            1 MNDSEFHRLADQLWLTIEERLDDWD----GDSDIDCEINGGVLTITFEN-GSKIIINRQEPLHQVWLATKQGG-YHFDLK   74 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCC----SSSCCEEEEETTEEEEECTT-SCEEEEEEETTTTEEEEECSSCE-EEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhc----cCCCEeeeccCCEEEEEECC-CCEEEEeCCchhhhheEecCCCc-eeeeec
Confidence            8999999999999999999999752    34789999999999999995 99999999999999999999877 999999


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      ++  +|+++|+|.+|+++|++||++++|.+|+|
T Consensus        75 ~~--~Wi~~r~g~~L~~~L~~e~~~~~g~~v~f  105 (106)
T 1ew4_A           75 GD--EWICDRSGETFWDLLEQAATQQAGETVSF  105 (106)
T ss_dssp             TT--EEEETTTCCBHHHHHHHHHHHHHTSCCCC
T ss_pred             CC--EEEECCCCchHHHHHHHHHHHHhCCCccc
Confidence            86  99999999999999999999999999987

>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A

Probab=100.00  E-value=5.7e-41  Score=264.92  Aligned_cols=112  Identities=33%  Similarity=0.560  Sum_probs=103.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCC
Q psy10962         66 CSSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSG  145 (196)
Q Consensus        66 ~~~~~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSG  145 (196)
                      .|.....|++.|||++||++|+.|+++||++.|+ ..++++||+++||||||+|++ +|+||||||+|+||||||||+||
T Consensus        10 ~p~~~~~l~~~efh~lad~~L~~L~~~lE~~~d~-~~~d~~Dve~~~gVLti~f~~-~~~~VINkQ~P~~QIWlaSp~SG   87 (123)
T 3oeq_A           10 VPQEVLNLPLEKAHEEADDYLDHLLDSLEELSEA-HPDCIPDVELSHGVMTLEIPA-FGTYVINKQPPNKQIWLASPLSG   87 (123)
T ss_dssp             CCSTTTTSCCCCCCCHHHHHHHHHHHHHTTTSSS-CSSCCCEEEECSSEEEEECTT-TCCEEEECCCSSSCCEEEETTTE
T ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-ccCcceEEEccCCEEEEEECC-CCEEEEeCCChhhHHheecCCCC
Confidence            3677899999999999999999999999998775 223348999999999999995 99999999999999999999999


Q ss_pred             CcceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCC
Q psy10962        146 PKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTS  181 (196)
Q Consensus       146 p~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~  181 (196)
                      |+||+|+++  +|+++|+|.+|+++|++||+++++.
T Consensus        88 p~hfd~~~~--~Wi~~r~g~~l~~~L~~el~~~~~~  121 (123)
T 3oeq_A           88 PNRFDLLNG--EWVSLRNGTKLTDILTEEVEKAISK  121 (123)
T ss_dssp             EEEEEESSS--SEEETTTCCBHHHHHHHHHHHHHHC
T ss_pred             CeeEeecCC--eEEECCCCchHHHHHHHHHHHHhcc
Confidence            999999986  9999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1ekga_	119	d.82.2.1 (A:) C-terminal domain of frataxin {Human	3e-40
d2fqla1	112	d.82.2.1 (A:61-172) C-terminal domain of frataxin	6e-35
d1ew4a_	106	d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}	9e-33

>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: N domain of copper amine oxidase-like
superfamily: Frataxin/Nqo15-like
family: Frataxin-like
domain: C-terminal domain of frataxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 3e-40
 Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 3/118 (2%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
            YE +  ETL+SL ++F+ + ++    E+ DV++G GVLTV  G   GTYVIN+QTPNKQ
Sbjct: 5   TYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQ 64

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGK 194
           IWLSSP+SGPKRYD+      W+Y HD  SLH+LL  E+   + + +D  S+ ++SGK
Sbjct: 65  IWLSSPSSGPKRYDWT--GKNWVYSHDGVSLHELLAAELTKALKTKLDL-SSLAYSGK 119

>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 112

class: Alpha and beta proteins (a+b)
fold: N domain of copper amine oxidase-like
superfamily: Frataxin/Nqo15-like
family: Frataxin-like
domain: C-terminal domain of frataxin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (294), Expect = 6e-35
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 72  SISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQ 131
           ++ L +     ++ L+ L D  + + E +      DV    GV+T+      GTYVIN+Q
Sbjct: 7   NLPLEKAHEEADDYLDHLLDSLEELSEAHPDCI-PDVELSHGVMTLEIPA-FGTYVINKQ 64

Query: 132 TPNKQIWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIV 179
            PNKQIWL+SP SGP R+D       W+   +   L D+L EE+   +
Sbjct: 65  PPNKQIWLASPLSGPNRFDLL--NGEWVSLRNGTKLTDILTEEVEKAI 110

>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: N domain of copper amine oxidase-like
superfamily: Frataxin/Nqo15-like
family: Frataxin-like
domain: CyaY
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (279), Expect = 9e-33
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 77  EYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQ 136
           E+  + ++   ++ +  D    +     + D     GVLT+ F N     +INRQ P  Q
Sbjct: 5   EFHRLADQLWLTIEERLDDWDGD----SDIDCEINGGVLTITFEN-GSKIIINRQEPLHQ 59

Query: 137 IWLSSPTSGPKRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF 185
           +WL++   G   +D       WI     ++  DLL++         V F
Sbjct: 60  VWLATK-QGGYHFDLKGDE--WICDRSGETFWDLLEQAATQQAGETVSF 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1ekga_	119	C-terminal domain of frataxin {Human (Homo sapiens	100.0
d1ew4a_	106	CyaY {Escherichia coli [TaxId: 562]}	100.0
d2fqla1	112	C-terminal domain of frataxin {Baker's yeast (Sacc	100.0

>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: N domain of copper amine oxidase-like
superfamily: Frataxin/Nqo15-like
family: Frataxin-like
domain: C-terminal domain of frataxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-45  Score=285.12  Aligned_cols=119  Identities=49%  Similarity=0.895  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      |+|.+||++||++|+.|+++||++.|+.+...|+|+++++|||||+|++++|+||||||+|+||||||||+|||+||+|+
T Consensus         1 m~e~~f~~~ad~~L~~l~~~le~~~d~~~~~~d~D~e~~~gvLti~f~~~~~~~VINkQ~p~~QIWlASp~sG~~~fd~~   80 (119)
T d1ekga_           1 LDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWT   80 (119)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTTSTTSCTTCEEEEETTEEEEECCTTCCEEEEEEEGGGTEEEEEETTTEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeccCCEEEEEECCCCcEEEEeCCCCceeEEEEcCCCCchhceec
Confidence            89999999999999999999999988754567999999999999999544799999999999999999999999999999


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEEeeccccCCC
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDFYSNCSHSGK  194 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f~~~~~~~~~  194 (196)
                      ++  +|+++|+|.+|+++|++||++++|.+|+| ..|||+|+
T Consensus        81 ~~--~Wi~~r~g~~L~~~L~~el~~~~g~~v~f-~~l~~~~~  119 (119)
T d1ekga_          81 GK--NWVYSHDGVSLHELLAAELTKALKTKLDL-SSLAYSGK  119 (119)
T ss_dssp             SS--SEEETTTCCBHHHHHHHHHHHHHTSCCCC-TTSTTSCC
T ss_pred             CC--eeEECCCCchHHHHHHHHHHHHhCCceEe-eecccCCC
Confidence            87  89999999999999999999999999999 99999985

>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: N domain of copper amine oxidase-like
superfamily: Frataxin/Nqo15-like
family: Frataxin-like
domain: CyaY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-42  Score=261.85  Aligned_cols=105  Identities=25%  Similarity=0.483  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCCcceeEc
Q psy10962         73 ISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGPKRYDFD  152 (196)
Q Consensus        73 Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp~hFdy~  152 (196)
                      |||++||++||++|+.|+++||++.    .+.|+|+++++|||||+|++ +|+||||||+|++||||||| |||+||+|+
T Consensus         1 m~e~~f~~~ad~~l~~i~~~ld~~~----~~~d~D~e~~~gvLti~~~~-~~~~VINkQ~p~~QIWlaSp-sgg~hf~~~   74 (106)
T d1ew4a_           1 MNDSEFHRLADQLWLTIEERLDDWD----GDSDIDCEINGGVLTITFEN-GSKIIINRQEPLHQVWLATK-QGGYHFDLK   74 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCC----SSSCCEEEEETTEEEEECTT-SCEEEEEEETTTTEEEEECS-SCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcc----ccCCeeeeccCCEEEEEECC-CCEEEEeCCCccceeeEECC-CCCcccccc
Confidence            8999999999999999999999753    24689999999999999996 99999999999999999999 999999999


Q ss_pred             CCCCceEEcCCCccHHHHHHHHHHhhcCCcEEE
Q psy10962        153 PSRNIWIYKHDNKSLHDLLQEEIVTIVTSNVDF  185 (196)
Q Consensus       153 ~~~~~Wi~tRdg~eL~~lLs~Els~~~G~~v~f  185 (196)
                      ++  +|+++|+|.+|+++|++||++++|++|+|
T Consensus        75 ~~--~Wi~~r~g~~L~~~L~~el~~~~G~~v~F  105 (106)
T d1ew4a_          75 GD--EWICDRSGETFWDLLEQAATQQAGETVSF  105 (106)
T ss_dssp             TT--EEEETTTCCBHHHHHHHHHHHHHTSCCCC
T ss_pred             CC--EEEECCCChHHHHHHHHHHHHHhCCCeec
Confidence            87  89999999999999999999999999998

>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: N domain of copper amine oxidase-like
superfamily: Frataxin/Nqo15-like
family: Frataxin-like
domain: C-terminal domain of frataxin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-40  Score=256.92  Aligned_cols=111  Identities=33%  Similarity=0.565  Sum_probs=103.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeecCcEEEEEEcCCCcEEEEcCCCccceeeeccCCCCC
Q psy10962         67 SSLTGSISLPEYEVICNETLESLTDYFDVIVEENTHLENADVTYGDGVLTVNFGNPHGTYVINRQTPNKQIWLSSPTSGP  146 (196)
Q Consensus        67 ~~~~s~Mte~eF~~lAD~tL~~Iee~LE~~~d~~~~~~d~Dvd~sgGVLTI~f~~~~gtyVINkQ~P~rQIWLSSPiSGp  146 (196)
                      |..+..|++.+||++||++|+.|+++||++.|+ ..+.|+||++++|||||+|++ +|+||||||+|+||||||||+|||
T Consensus         2 p~~~~~l~~~ef~~~ad~~L~~i~~~le~~~d~-~~d~d~D~e~~~gvLti~~~~-~~~~VINkQ~p~~QIWlaSp~sG~   79 (112)
T d2fqla1           2 PQEVLNLPLEKAHEEADDYLDHLLDSLEELSEA-HPDCIPDVELSHGVMTLEIPA-FGTYVINKQPPNKQIWLASPLSGP   79 (112)
T ss_dssp             CTTTTTSCCCCCCCHHHHHHHHHHHHHHTTSSS-CSSSSCEEECCSSEEEEEETT-TEEEEEEECCSSSSEEEEETTTEE
T ss_pred             ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhc-ccccceeeeccCCEEEEEECC-CCEEEEeCCCchhheeEecCCCCc
Confidence            556789999999999999999999999998776 345789999999999999996 999999999999999999999999


Q ss_pred             cceeEcCCCCceEEcCCCccHHHHHHHHHHhhcCC
Q psy10962        147 KRYDFDPSRNIWIYKHDNKSLHDLLQEEIVTIVTS  181 (196)
Q Consensus       147 ~hFdy~~~~~~Wi~tRdg~eL~~lLs~Els~~~G~  181 (196)
                      +||+|+++  .|+++|+|.+|+++|++||++++++
T Consensus        80 ~~f~~~~~--~W~~~r~g~~L~~~L~~el~~~~~k  112 (112)
T d2fqla1          80 NRFDLLNG--EWVSLRNGTKLTDILTEEVEKAISK  112 (112)
T ss_dssp             EEEEESSS--CEEETTTCCBHHHHHHHHHHHHHHC
T ss_pred             ccceecCC--eEEECCCCccHHHHHHHHHHHHhcC
Confidence            99999987  8999999999999999999999864