Psyllid ID: psy10969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEKEYQT
Secondary Structure (PSIPRED)
cccEEEcHHHHHHHHHHHcccccccccEEEEcccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEcccccEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcHHHHHHHHHHHHccccccEcEEEEEEccccccccccEEEEEEccHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEcccccEEEcccccccccccHHHHHHHHHHcccHHHcccHHHHcccccHccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSEISFTDRAYCKMILHavkyphcsinGVLLAVtvpttkespkkltyvdaiplfHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLAnenikdvsydkpyqsrIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAqnsdgkwkpvsknsiivdqttlsSVSTLIQRNISRHLVDfdnhldnlsadwtNSELNEIIEKEYQT
Flexible Loop (DISEMBL)
MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVaqnsdgkwkpvsknsiivdqttlssVSTLIQRNISRHLVDFDNHLDnlsadwtnselnEIIEKEYQT
Low Complexity Region (SEG)
MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEKEYQT
Disordered region (IsUnstruct)
*****FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNS************
Disordered Region (DISOPRED)
***ISFTDRAYCKMILHAVKYPHCSINGVLLA**************YVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDG*WK*VSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEKE***
Disordered Region (DISEMBL)
MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEKEYQT
Disordered Region (DISPRO)
*SEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEKEYQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEKEYQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9W1Y1	203	ER membrane protein compl	yes	N/A	0.926	0.931	0.472	1e-41
Q5U1W7	206	ER membrane protein compl	yes	N/A	0.955	0.946	0.430	3e-39
Q9DB76	206	ER membrane protein compl	yes	N/A	0.955	0.946	0.425	9e-39
O70378	207	ER membrane protein compl	no	N/A	0.960	0.946	0.409	2e-38
Q5FVL2	207	ER membrane protein compl	no	N/A	0.960	0.946	0.409	2e-38
Q9Y3B6	208	ER membrane protein compl	yes	N/A	0.955	0.937	0.410	1e-37
O43402	210	ER membrane protein compl	no	N/A	0.960	0.933	0.379	3e-35
Q32KL5	210	ER membrane protein compl	no	N/A	0.965	0.938	0.381	4e-35
Q9FG71	208	ER membrane protein compl	yes	N/A	0.892	0.875	0.293	2e-18
Q55FM0	192	ER membrane protein compl	yes	N/A	0.897	0.953	0.282	3e-16

>sp|Q9W1Y1|EMC89_DROME ER membrane protein complex subunit 8/9 homolog OS=Drosophila melanogaster GN=CG3501 PE=1 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 124/201 (61%), Gaps = 12/201 (5%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M +   ++RAY K+I HA KYPH ++NG+LLA    T+K S  ++  VDAIPLFH CL V
Sbjct: 1   MCDYKVSERAYAKLIFHAAKYPHQAVNGLLLAEK--TSKGS--QVEIVDAIPLFHQCLYV 56

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           TPM E+AL  I ++A+  GLVIAGYY A EN  D   DK   ++IADKI E F  AC +V
Sbjct: 57  TPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVV 116

Query: 121 LDNRKLTQTMQESALIV---AQNSDGKWKPVSKNSIIVDQT--TLSSVSTLIQRNISRHL 175
           +DN+ +T     +A+ V     +S  +W   SK    + Q   TL  VS L++R   R L
Sbjct: 117 VDNKLMTLQHDRAAIQVFNCPGDSGARW---SKAKFTLSQASDTLEGVSLLLKRGAMRDL 173

Query: 176 VDFDNHLDNLSADWTNSELNE 196
           VDFDNHLDN   +WTN  LN+
Sbjct: 174 VDFDNHLDNPDKNWTNDFLNQ 194

Drosophila melanogaster (taxid: 7227)

>sp|Q5U1W7|EMC9_RAT ER membrane protein complex subunit 9 OS=Rattus norvegicus GN=Emc9 PE=2 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M E+  + RAY KM LHA +YPH ++NG+LLA   P T+ S + L   D +PLFH  L +
Sbjct: 1   MGEVEISARAYGKMCLHASRYPHAAVNGLLLA---PATR-SGECLCLTDCVPLFHSHLAL 56

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           + M+E+AL Q+  +A   GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct: 57  SVMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQS-PGPLALKIAGRIAEFFPNAVLIM 115

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVD--QTTLSSVSTLIQRNISRHLVDF 178
           LDN+KL    +   +IV +N   +W P  KN ++    + +   V  L++    +HLVDF
Sbjct: 116 LDNKKLVTWPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDF 175

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           D HLD++  DWTN  LN  I +
Sbjct: 176 DCHLDDIRQDWTNQRLNTQITQ 197

Rattus norvegicus (taxid: 10116)

>sp|Q9DB76|EMC9_MOUSE ER membrane protein complex subunit 9 OS=Mus musculus GN=Emc9 PE=2 SV=1

 Score =  159 bits (403), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 120/202 (59%), Gaps = 7/202 (3%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M E+  + RAY KM LHA +YPH ++NG+LLA   P T  S + L   D +PLFH  L +
Sbjct: 1   MGEVEISARAYGKMCLHASRYPHAAVNGLLLA---PATG-SGECLCLTDCVPLFHSHLAL 56

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           + M+E+AL Q+  +    GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct: 57  SVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQS-PGPLALKIAGRIAEFFPRAVLIM 115

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVD--QTTLSSVSTLIQRNISRHLVDF 178
           LDN+KL    +   +IV +N   +W P  KN ++    + +   V  L++    +HLVDF
Sbjct: 116 LDNKKLVTRPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDF 175

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           D HLD++  DWTN  LN  I +
Sbjct: 176 DCHLDDIRQDWTNQRLNTQITQ 197

Mus musculus (taxid: 10090)

>sp|O70378|EMC8_MOUSE ER membrane protein complex subunit 8 OS=Mus musculus GN=Emc8 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 120/205 (58%), Gaps = 9/205 (4%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLT----YVDAIPLFHL 56
           M  +  T +AYCKM+LH  KYPHC++NG+L+A      KE P        +VD IPLFH 
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHG 60

Query: 57  CLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAA 116
            L +TPM+E+ALT I S+ + N  VIAGYY ANE +KD S ++    ++A +IAE F  A
Sbjct: 61  TLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQ-VAEKVASRIAEGFGDA 119

Query: 117 CLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVD---QTTLSSVSTLIQRNISR 173
            LI++DN K T       + V +  + +W+    +    +   +    S S L  R+   
Sbjct: 120 ALIMVDNAKFTMDCAAPTIHVYEQHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYET 179

Query: 174 HLVDFDNHLDNLSADWTNSELNEII 198
            LVDFDNHLD++ +DWTN E+N+ +
Sbjct: 180 -LVDFDNHLDDIRSDWTNPEINKAV 203

Mus musculus (taxid: 10090)

>sp|Q5FVL2|EMC8_RAT ER membrane protein complex subunit 8 OS=Rattus norvegicus GN=Emc8 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 120/205 (58%), Gaps = 9/205 (4%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLT----YVDAIPLFHL 56
           M  +  T +AYCKM+LH  KYPHC++NG+L+A      KE P        +VD IPLFH 
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHG 60

Query: 57  CLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAA 116
            L +TPM+E+ALT I S+ + N  VIAGYY ANE +KD S ++    ++A +IAE F  A
Sbjct: 61  TLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQ-VAEKVASRIAEGFSDA 119

Query: 117 CLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVD---QTTLSSVSTLIQRNISR 173
            LI++DN K T       + V +  + +W+    +    +   +    S S L  R+   
Sbjct: 120 ALIMVDNAKFTMDCAAPTIHVYEQHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYET 179

Query: 174 HLVDFDNHLDNLSADWTNSELNEII 198
            LVDFDNHLD++ +DWTN E+N+ +
Sbjct: 180 -LVDFDNHLDDIRSDWTNPEINKAV 203

Rattus norvegicus (taxid: 10116)

>sp|Q9Y3B6|EMC9_HUMAN ER membrane protein complex subunit 9 OS=Homo sapiens GN=EMC9 PE=1 SV=3

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 117/202 (57%), Gaps = 7/202 (3%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M E+  +  AY KM LHA +YPH ++NG+ LA   P + E    L   D +PLFH  L +
Sbjct: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLA-PAPRSGEC---LCLTDCVPLFHSHLAL 56

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           + M+E+AL Q+  +    GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct: 57  SVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQS-PGPLALKIAGRIAEFFPDAVLIM 115

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVD--QTTLSSVSTLIQRNISRHLVDF 178
           LDN+KL    +   +IV +N   +W P  KN ++    + +   V  L++    +HLVDF
Sbjct: 116 LDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDF 175

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           D HLD++  DWTN  LN  I +
Sbjct: 176 DCHLDDIRQDWTNQRLNTQITQ 197

Homo sapiens (taxid: 9606)

>sp|O43402|EMC8_HUMAN ER membrane protein complex subunit 8 OS=Homo sapiens GN=EMC8 PE=1 SV=1

 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 12/208 (5%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVT-------VPTTKESPKKLTYVDAIPL 53
           M  +  T +AYCKM+LH  KYPHC++NG+L+A         +P          +VD IPL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 54  FHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFF 113
           FH  L + PM+E+ALT I S+ + +  VIAGYY ANE +KD S ++    ++A +IAE F
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQ-VAEKVASRIAEGF 119

Query: 114 PAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVD---QTTLSSVSTLIQRN 170
               LI++DN K T       + V ++ + +W+    +    +   +    S S L  R+
Sbjct: 120 SDTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRS 179

Query: 171 ISRHLVDFDNHLDNLSADWTNSELNEII 198
               LVDFDNHLD++  DWTN E+N+ +
Sbjct: 180 YET-LVDFDNHLDDIRNDWTNPEINKAV 206

Homo sapiens (taxid: 9606)

>sp|Q32KL5|EMC8_BOVIN ER membrane protein complex subunit 8 OS=Bos taurus GN=EMC8 PE=2 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 10/207 (4%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVT-------VPTTKESPKKLTYVDAIPL 53
           M  +  T +AYCKM+LH  KYPHC+++G+L+A         +P          +VD IPL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 54  FHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFF 113
           FH  L + PM+E+ALT I S+ + N  VIAGYY ANE +KD S ++    ++A +IAE F
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQ-VAEKVASRIAEGF 119

Query: 114 PAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVDQTTLSSVS-TLIQRNI 171
               LI++DN K T       + V ++ + KW+    +     D      +S +L+    
Sbjct: 120 SDTALIMVDNTKFTMDCVVPTIHVYEHHENKWRCRDPHYDYCEDWPEAQRISASLLDSRS 179

Query: 172 SRHLVDFDNHLDNLSADWTNSELNEII 198
              LVDFDNHLD++  DWTN E+N+ +
Sbjct: 180 YETLVDFDNHLDDIRNDWTNPEINKAV 206

Bos taurus (taxid: 9913)

>sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 107/201 (53%), Gaps = 19/201 (9%)

Query: 6   FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYV---DAIPLFHLCLQVTP 62
            +  AY K++LH++++   ++NGVL+       + SPK    V   D++PLFH  L + P
Sbjct: 13  ISQNAYIKLVLHSLRHKTAAVNGVLVG------RISPKDDGVVEISDSVPLFHSNLALLP 66

Query: 63  MIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLD 122
            +EI+L  I  +  + GL I GY+ ANE   DV         I D I+ +FP A +++L+
Sbjct: 67  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVEL-CGVAKNIGDHISRYFPQAPILLLN 125

Query: 123 NRK---LTQTMQESAL--IVAQNSDGKWKPVSKNS---IIVDQTTLSSV-STLIQRNISR 173
           N+K   L++  + S +  +  +++   W+ V  +    +++ + + + V S  I     +
Sbjct: 126 NKKLEALSKGKERSPVMQLCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWK 185

Query: 174 HLVDFDNHLDNLSADWTNSEL 194
            + D D+HLD+++ DW N  L
Sbjct: 186 DVTDVDDHLDDVTKDWLNPGL 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q55FM0|EMC89_DICDI ER membrane protein complex subunit 8/9 homolog OS=Dictyostelium discoideum GN=DDB_G0268048 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 15/198 (7%)

Query: 2   SEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVT 61
           + IS T  A  K  LH+ K+   S+NG+LL       K     +   D IPLFH    + 
Sbjct: 3   NNISITTEALSKAHLHSFKHHASSVNGILLG------KADKNSILITDIIPLFH-TQTLL 55

Query: 62  PMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVL 121
           PM E+A+ QI  Y + N + + GYY +N+ I +    +P   +IAD++       C +++
Sbjct: 56  PMFEVAMIQIEKYCRDNNIDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMI 115

Query: 122 DNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSS-VSTLIQRNISR----HLV 176
                 +  + S L+        W    K  I +D T+ S  ++ +++RN+       + 
Sbjct: 116 SK---IEVNRPSGLVSIDKVGSDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIY 172

Query: 177 DFDNHLDNLSADWTNSEL 194
           DF+ +L N + DW N  L
Sbjct: 173 DFEEYLSNPTRDWLNKSL 190

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
307192224	205	UPF0172 protein CG3501 [Harpegnathos sal	0.965	0.960	0.539	1e-54
242012237	206	conserved hypothetical protein [Pediculu	0.970	0.961	0.509	3e-54
332024309	205	Neighbor of COX4 [Acromyrmex echinatior]	0.965	0.960	0.519	1e-52
307177855	205	UPF0172 protein CG3501 [Camponotus flori	0.965	0.960	0.514	6e-52
156548815	206	PREDICTED: UPF0172 protein CG3501-like [	0.965	0.956	0.517	1e-51
328792599	207	PREDICTED: UPF0172 protein CG3501-like [	0.975	0.961	0.514	1e-50
350413253	207	PREDICTED: UPF0172 protein CG3501-like [	0.975	0.961	0.514	2e-50
242247351	212	neighbor of COX4-like [Acyrthosiphon pis	0.955	0.919	0.485	4e-50
340708666	207	PREDICTED: UPF0172 protein CG3501-like [	0.975	0.961	0.509	5e-50
383856522	207	PREDICTED: UPF0172 protein CG3501-like [	0.975	0.961	0.475	6e-48

>gi|307192224|gb|EFN75526.1| UPF0172 protein CG3501 [Harpegnathos saltator]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 143/202 (70%), Gaps = 5/202 (2%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M+ + F+ RAYCK+ILHA KYPHC+ING+LL      TK+    L   DAIPLFH+CL V
Sbjct: 1   MANVFFSPRAYCKIILHAAKYPHCAINGLLLGKQ--KTKDGRADLYIEDAIPLFHICLHV 58

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT +   A S GL++AGYYLANENI D+S D+P   RIADKIAE F  A L+V
Sbjct: 59  SPMAEIALTLVDQLAVSKGLILAGYYLANENINDLSTDRPAH-RIADKIAENFNNALLVV 117

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSS--VSTLIQRNISRHLVDF 178
           +DNR++T +MQ S L ++Q+ DGKWKP  K +II ++    +  + +L++    R LVDF
Sbjct: 118 VDNREVTLSMQSSPLRISQSIDGKWKPKDKANIIYERDVAYTDVMYSLLKEEQYRSLVDF 177

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLDN+  DW N +LNE+IE+
Sbjct: 178 DNHLDNIRLDWQNQKLNEVIEE 199

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012237|ref|XP_002426840.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511053|gb|EEB14102.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 149/206 (72%), Gaps = 8/206 (3%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPT-TKESPKKLTYVDAIPLFHLCLQ 59
           M+++SF+ RAY KMILH  KYPHC++NGVLLA ++ T   ++ + L +VDAIPLFH+CL 
Sbjct: 1   MADVSFSSRAYAKMILHCAKYPHCAVNGVLLAESLKTKGSKNSENLLFVDAIPLFHICLH 60

Query: 60  VTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLI 119
           ++PM E+ALTQI   A S GLVIAGYY+ANEN +D+S +  +  +IAD+IAE FP+ACL+
Sbjct: 61  LSPMYEVALTQIDHMAASKGLVIAGYYIANENFRDISSETGH--KIADRIAENFPSACLV 118

Query: 120 VLDNRKL----TQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHL 175
           V++N+K       + ++S LIV QN+DGKWK   K+SI +   ++S    L+ +  ++ +
Sbjct: 119 VIENKKFPSCHGDSNEDSPLIVYQNADGKWKTKDKSSIEISNKSISKTCELMMKG-TQDV 177

Query: 176 VDFDNHLDNLSADWTNSELNEIIEKE 201
           VDFDNHLD++S DW N  LN+ IE E
Sbjct: 178 VDFDNHLDDISLDWWNDNLNKSIEAE 203

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024309|gb|EGI64508.1| Neighbor of COX4 [Acromyrmex echinatior]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 5/202 (2%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M+ + F+ RAYCK+ILHA KYPHC+ING+LL       K+    L   DAIPLFH+CL V
Sbjct: 1   MTNVFFSPRAYCKIILHAAKYPHCAINGLLLGKQ--KNKDGRADLYIEDAIPLFHICLHV 58

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT +   A S GL++AGYYLANENI D+S D+P   RIADKIAE F +A L+V
Sbjct: 59  SPMAEIALTLVDQLAASKGLILAGYYLANENINDLSTDRPAH-RIADKIAENFNSALLVV 117

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIV--DQTTLSSVSTLIQRNISRHLVDF 178
           +DNR++T  M  S L ++Q+ +GKWKP  K +II   D     ++ +L++    R+L+DF
Sbjct: 118 VDNREVTLGMGSSPLRISQSVEGKWKPKDKANIIYEDDIAHTDAMYSLLKAEEYRNLIDF 177

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLDN++ DW N +LN+II++
Sbjct: 178 DNHLDNIALDWQNQKLNKIIDE 199

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177855|gb|EFN66815.1| UPF0172 protein CG3501 [Camponotus floridanus]

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 143/202 (70%), Gaps = 5/202 (2%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M+ + F+ RAYCK+ILHA KYPHC+ING+LL      TK+    L   DAIPLFH+CL V
Sbjct: 1   MTNVFFSPRAYCKIILHATKYPHCAINGLLLGKQ--KTKDGRADLYIEDAIPLFHICLHV 58

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT +   A S GL++AGYYLANENI D+S D+P   RIADKIA+ F +A L+V
Sbjct: 59  SPMAEIALTLVDQLAVSKGLILAGYYLANENINDLSTDRPAH-RIADKIADNFNSALLVV 117

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTL--SSVSTLIQRNISRHLVDF 178
           +DNR++T  M  S L ++Q++DGKWK   K +II +       ++ +L++    R+L+DF
Sbjct: 118 VDNREVTLGMGSSPLRISQSTDGKWKLKDKANIIYEGGVAHTDAMYSLLKAEEYRNLIDF 177

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLDN++ DW N +LN+II++
Sbjct: 178 DNHLDNVTLDWQNQKLNKIIDE 199

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548815|ref|XP_001605922.1| PREDICTED: UPF0172 protein CG3501-like [Nasonia vitripennis]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 140/201 (69%), Gaps = 4/201 (1%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M++ISF+ RAY K+ILHA KYPHC+ING+LL     ++  S  +L  VDA+PLFH+CL V
Sbjct: 1   MADISFSGRAYAKIILHAAKYPHCAINGLLLGKQPKSS--SGTELQIVDAVPLFHVCLHV 58

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM E+ALT +   A S GLVIAGYYLANENI D+S DKP    I++KIAE F  A + V
Sbjct: 59  SPMSEVALTMVEQLASSQGLVIAGYYLANENINDISTDKPAHRSISEKIAENFSHAVVAV 118

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTT--LSSVSTLIQRNISRHLVDF 178
           +DN+++T  M  + L ++Q S+GKWK   K+SI  +     L ++  L++    R+LVDF
Sbjct: 119 VDNKEMTIGMNTNPLRISQFSEGKWKFKEKSSINYEGGAGLLEAMYNLMRNEEYRNLVDF 178

Query: 179 DNHLDNLSADWTNSELNEIIE 199
           DNHLDN+S DW N +LNE I+
Sbjct: 179 DNHLDNISLDWRNLKLNEAID 199

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792599|ref|XP_624749.3| PREDICTED: UPF0172 protein CG3501-like [Apis mellifera] gi|380023390|ref|XP_003695506.1| PREDICTED: UPF0172 protein CG3501-like [Apis florea]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 139/202 (68%), Gaps = 3/202 (1%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M++ISF+ RAYCK+ILHA KYPHC+ING+LLA           +L   D IPLFH+CL V
Sbjct: 1   MADISFSSRAYCKIILHAAKYPHCAINGLLLAKQSNKNDGKFIELHIEDVIPLFHICLHV 60

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT +  YA S GLV+AGYYLANENI D+S DKP   +IADKIAE +    L+V
Sbjct: 61  SPMAEIALTMVDQYAISKGLVLAGYYLANENINDLSTDKP-AHKIADKIAENYGNTLLVV 119

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQ--TTLSSVSTLIQRNISRHLVDF 178
           +DN+++T  M  + L V+Q  DGKWK      I+ D+  T    + +L++    R+L+DF
Sbjct: 120 VDNKEITLAMNSNPLRVSQFIDGKWKLKDITDILYDKGVTHTDVLYSLLKAEEYRNLIDF 179

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLD++S +W N +LN+IIE+
Sbjct: 180 DNHLDDISLNWQNQKLNKIIEE 201

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413253|ref|XP_003489935.1| PREDICTED: UPF0172 protein CG3501-like [Bombus impatiens]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 137/202 (67%), Gaps = 3/202 (1%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M++ISF+ RAYCK+ILHA KYPHC+ING+LL      +     +L   D IPLFH+CL V
Sbjct: 1   MADISFSSRAYCKIILHAAKYPHCAINGLLLGKQNSKSDSKSVELHIEDVIPLFHICLHV 60

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT +  YA S GLV+AGYYLANENI D+S DKP   +IADKIAE      L+V
Sbjct: 61  SPMAEIALTMVDQYAISKGLVLAGYYLANENINDLSTDKPAH-KIADKIAENCGNTLLVV 119

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQ--TTLSSVSTLIQRNISRHLVDF 178
           +DN+++T  M  + L V+Q  DGKWK      I+ D+  T    + +L++    R+LVDF
Sbjct: 120 VDNKEITLAMSSNPLRVSQFVDGKWKLKDVTDILYDKGVTHTDVLYSLLKAEEYRNLVDF 179

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLD++S DW N +LN+ IE+
Sbjct: 180 DNHLDDISLDWQNCKLNKTIEE 201

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247351|ref|NP_001156111.1| neighbor of COX4-like [Acyrthosiphon pisum] gi|239792384|dbj|BAH72543.1| ACYPI002488 [Acyrthosiphon pisum]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 137/200 (68%), Gaps = 5/200 (2%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           MS++SF+  AYCKM+ HA KYPHC +NG+L+A    +TK    KL  VD +PLFH CL V
Sbjct: 1   MSKVSFSTLAYCKMVAHAAKYPHCEVNGLLVAEN--STK--GDKLVIVDTVPLFHQCLHV 56

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIAL QI   A +  + IAGYYLANE + D+SYDKP   +I DKI E     C++V
Sbjct: 57  SPMSEIALMQIDQSASTCDMYIAGYYLANETLDDLSYDKPAH-KIMDKIVEHETNVCMVV 115

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVDFDN 180
           ++NR +    +ESAL+V    DGKWK ++ +++ ++  TL++ S ++Q+ +  +LVDFDN
Sbjct: 116 INNRLMELNQKESALLVHTQDDGKWKRLNNSNVQIENVTLAAASAVLQQQLYNNLVDFDN 175

Query: 181 HLDNLSADWTNSELNEIIEK 200
           HLDNLS DW N+E +  +E+
Sbjct: 176 HLDNLSLDWLNTEFSNCVER 195

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708666|ref|XP_003392943.1| PREDICTED: UPF0172 protein CG3501-like [Bombus terrestris]

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 136/202 (67%), Gaps = 3/202 (1%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M++ISF+ RAYCK+ILHA KYPHC+ING+LL      +     +L   D IPLFH+CL V
Sbjct: 1   MADISFSSRAYCKIILHAAKYPHCAINGLLLGKQNSKSDSKSVELHIEDVIPLFHICLHV 60

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT +  YA   GLV+AGYYLANENI D+S DKP   +IADKIAE      L+V
Sbjct: 61  SPMAEIALTMVDQYAIGKGLVLAGYYLANENINDLSTDKPAH-KIADKIAENCGNTLLVV 119

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQ--TTLSSVSTLIQRNISRHLVDF 178
           +DN+++T  M  + L V+Q  DGKWK      I+ D+  T    + +L++    R+LVDF
Sbjct: 120 VDNKEITLAMSSNPLRVSQFVDGKWKLKDVTDILYDKGVTHTDVLYSLLKAEEYRNLVDF 179

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLD++S DW N +LN+ IE+
Sbjct: 180 DNHLDDISLDWQNCKLNKTIEE 201

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856522|ref|XP_003703757.1| PREDICTED: UPF0172 protein CG3501-like [Megachile rotundata]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 137/202 (67%), Gaps = 3/202 (1%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M+EISF+ RAYCK+ILH  KYPHC++NG+LL   +  +     +L   DAIPLFH+CL V
Sbjct: 1   MAEISFSSRAYCKIILHTAKYPHCAVNGLLLGKQINKSDGKSVELRIEDAIPLFHICLHV 60

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
           +PM EIALT I  YA + GL+IAGYY ANENI D+S DKP   RIADKIAE      L+ 
Sbjct: 61  SPMAEIALTMIDQYAITKGLIIAGYYFANENIYDISVDKP-AHRIADKIAENTGNTLLVA 119

Query: 121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIVDQTTL--SSVSTLIQRNISRHLVDF 178
           ++N+++T +M  + L V Q  DGKWK      I  D+  +   ++ +L++    ++L+DF
Sbjct: 120 VENKEITLSMNSNPLRVLQYIDGKWKLKDITDISYDKGVMHTDALYSLLKAEHYKNLIDF 179

Query: 179 DNHLDNLSADWTNSELNEIIEK 200
           DNHLD++S +W N ++++II++
Sbjct: 180 DNHLDDISLNWQNPKIDKIIDE 201

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
FB|FBgn0034791	203	CG3501 [Drosophila melanogaste	0.936	0.940	0.467	1.1e-39
RGD|1311219	207	Cox4nb "COX4 neighbor" [Rattus	0.965	0.951	0.406	3e-37
MGI|MGI:1343095	207	Emc8 "ER membrane protein comp	0.965	0.951	0.406	3.9e-37
RGD|1308113	206	Emc9 "ER membrane protein comp	0.931	0.922	0.441	1e-36
UNIPROTKB|E1BF12	208	EMC9 "Uncharacterized protein"	0.941	0.923	0.431	1.7e-36
UNIPROTKB|F1SGM2	206	EMC9 "Uncharacterized protein"	0.931	0.922	0.431	2.7e-36
UNIPROTKB|F1N8E6	206	COX4NB "Uncharacterized protei	0.946	0.936	0.407	3.5e-36
MGI|MGI:1934682	206	Emc9 "ER membrane protein comp	0.931	0.922	0.436	4.4e-36
ZFIN|ZDB-GENE-040426-2692	202	emc8 "ER membrane protein comp	0.936	0.945	0.405	9.2e-36
UNIPROTKB|E2QSX7	207	FAM158A "Uncharacterized prote	0.931	0.917	0.424	2.4e-35

FB|FBgn0034791 CG3501 [Drosophila melanogaster (taxid:7227)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 93/199 (46%), Positives = 124/199 (62%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
             M +   ++RAY K+I HA KYPH ++NG+LLA    T+K S  ++  VDAIPLFH CL V
Sbjct:     1 MCDYKVSERAYAKLIFHAAKYPHQAVNGLLLAEK--TSKGSQVEI--VDAIPLFHQCLYV 56

Query:    61 TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
             TPM E+AL  I ++A+  GLVIAGYY A EN  D   DK   ++IADKI E F  AC +V
Sbjct:    57 TPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVV 116

Query:   121 LDNRKLTQTMQESALIVAQ---NSDGKWKPVSKNSIIVDQTTLSSVSTLIQRNISRHLVD 177
             +DN+ +T     +A+ V     +S  +W   +K ++     TL  VS L++R   R LVD
Sbjct:   117 VDNKLMTLQHDRAAIQVFNCPGDSGARWSK-AKFTLSQASDTLEGVSLLLKRGAMRDLVD 175

Query:   178 FDNHLDNLSADWTNSELNE 196
             FDNHLDN   +WTN  LN+
Sbjct:   176 FDNHLDNPDKNWTNDFLNQ 194

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005875 "microtubule associated complex" evidence=IDA

RGD|1311219 Cox4nb "COX4 neighbor" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 83/204 (40%), Positives = 120/204 (58%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESP----KKLTYVDAIPLFHL 56
             M  +  T +AYCKM+LH  KYPHC++NG+L+A      KE P        +VD IPLFH 
Sbjct:     1 MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHG 60

Query:    57 CLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAA 116
              L +TPM+E+ALT I S+ + N  VIAGYY ANE +KD S ++  + ++A +IAE F  A
Sbjct:    61 TLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAE-KVASRIAEGFSDA 119

Query:   117 CLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVDQTTLSSVS-TLIQRNISRH 174
              LI++DN K T       + V +  + +W+    +     D      +S +L+       
Sbjct:   120 ALIMVDNAKFTMDCAAPTIHVYEQHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYET 179

Query:   175 LVDFDNHLDNLSADWTNSELNEII 198
             LVDFDNHLD++ +DWTN E+N+ +
Sbjct:   180 LVDFDNHLDDIRSDWTNPEINKAV 203

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

MGI|MGI:1343095 Emc8 "ER membrane protein complex subunit 8" [Mus musculus (taxid:10090)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 83/204 (40%), Positives = 120/204 (58%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESP----KKLTYVDAIPLFHL 56
             M  +  T +AYCKM+LH  KYPHC++NG+L+A      KE P        +VD IPLFH 
Sbjct:     1 MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHG 60

Query:    57 CLQVTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAA 116
              L +TPM+E+ALT I S+ + N  VIAGYY ANE +KD S ++  + ++A +IAE F  A
Sbjct:    61 TLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAE-KVASRIAEGFGDA 119

Query:   117 CLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVDQTTLSSVS-TLIQRNISRH 174
              LI++DN K T       + V +  + +W+    +     D      +S +L+       
Sbjct:   120 ALIMVDNAKFTMDCAAPTIHVYEQHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYET 179

Query:   175 LVDFDNHLDNLSADWTNSELNEII 198
             LVDFDNHLD++ +DWTN E+N+ +
Sbjct:   180 LVDFDNHLDDIRSDWTNPEINKAV 203

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1308113 Emc9 "ER membrane protein complex subunit 9" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 87/197 (44%), Positives = 121/197 (61%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
             M E+  + RAY KM LHA +YPH ++NG+LLA   P T+ S + L   D +PLFH  L +
Sbjct:     1 MGEVEISARAYGKMCLHASRYPHAAVNGLLLA---PATR-SGECLCLTDCVPLFHSHLAL 56

Query:    61 TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
             + M+E+AL Q+  +A   GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct:    57 SVMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQS-PGPLALKIAGRIAEFFPNAVLIM 115

Query:   121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIV-D-QTTLSSVSTLIQRNISRHLVDF 178
             LDN+KL    +   +IV +N   +W P  KN ++  D + +   V  L++    +HLVDF
Sbjct:   116 LDNKKLVTWPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDF 175

Query:   179 DNHLDNLSADWTNSELN 195
             D HLD++  DWTN  LN
Sbjct:   176 DCHLDDIRQDWTNQRLN 192

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

UNIPROTKB|E1BF12 EMC9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 85/197 (43%), Positives = 119/197 (60%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
             M E+  + RAY KM LHA +YPH ++NG+LLA   P  + S + L   D +PLFH  L +
Sbjct:     1 MGEVEISARAYVKMSLHAARYPHAAVNGLLLA-PAPAPR-SGECLCLTDCVPLFHSHLAL 58

Query:    61 TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
             + M+E+AL Q+  +    GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct:    59 SVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQS-PGPLALKIAGRIAEFFPDAVLIM 117

Query:   121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIV-D-QTTLSSVSTLIQRNISRHLVDF 178
             LDN+KL        +IV +N   +W P  KN ++  D + +   V  L++    +HLVDF
Sbjct:   118 LDNQKLVPQPHVPPVIVLENHGLRWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDF 177

Query:   179 DNHLDNLSADWTNSELN 195
             D HLD++  DWTN +LN
Sbjct:   178 DCHLDDIREDWTNQQLN 194

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|F1SGM2 EMC9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 85/197 (43%), Positives = 119/197 (60%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
             M E+  + RAY KM LHA +YPH ++NG+LLA   P  + S + L   D +PLFH  L +
Sbjct:     1 MGEVEISARAYVKMCLHAARYPHAAVNGLLLA---PAPR-SGECLCLTDCVPLFHSHLAL 56

Query:    61 TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
             + M+E+AL Q+  +    GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct:    57 SVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQS-PGPLALKIAGRIAEFFPDAVLIM 115

Query:   121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIV-D-QTTLSSVSTLIQRNISRHLVDF 178
             LDN+KL        +IV +N   +W P  KN ++  D + +   V  L++    +HLVDF
Sbjct:   116 LDNQKLVPQPHVPPVIVLENHGLRWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDF 175

Query:   179 DNHLDNLSADWTNSELN 195
             D HLD++  DWTN +LN
Sbjct:   176 DCHLDDIREDWTNQQLN 192

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|F1N8E6 COX4NB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 82/201 (40%), Positives = 120/201 (59%)

Query:     4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTK----ESPKKLTYVDAIPLFHLCLQ 59
             +  T +AYCKM+LH  KYPHC++NG+L+A   P ++      P  L +VD IPLFH  L 
Sbjct:     4 MKLTTQAYCKMVLHGAKYPHCAVNGLLVAERPPGSRGREQAGPPSL-FVDCIPLFHGTLA 62

Query:    60 VTPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLI 119
             + PM+E+ALT I S+ + N  VIAGYY ANE +KD S  +  + ++A +IAE F    LI
Sbjct:    63 LAPMLEVALTLIDSWCKENSYVIAGYYQANERVKDASPTQVAE-KVASRIAEGFNDTALI 121

Query:   120 VLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVDQTTLSSVS-TLIQRNISRHLVD 177
             ++DN K T    E A+ V +  + KW+    +     D +    ++ +L+       LVD
Sbjct:   122 MVDNTKFTMECLEPAIHVYELHENKWRCKDPHVDFCEDWSEAQRIAASLLDSKSYETLVD 181

Query:   178 FDNHLDNLSADWTNSELNEII 198
             FDNHLD++  DWTN E+N+ +
Sbjct:   182 FDNHLDDIRNDWTNPEINKAV 202

GO:0005739 "mitochondrion" evidence=IEA

GO:0072546 "ER membrane protein complex" evidence=IEA

MGI|MGI:1934682 Emc9 "ER membrane protein complex subunit 9" [Mus musculus (taxid:10090)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 86/197 (43%), Positives = 119/197 (60%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
             M E+  + RAY KM LHA +YPH ++NG+LLA   P T  S + L   D +PLFH  L +
Sbjct:     1 MGEVEISARAYGKMCLHASRYPHAAVNGLLLA---PATG-SGECLCLTDCVPLFHSHLAL 56

Query:    61 TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
             + M+E+AL Q+  +    GLV+AGYY AN  + D S   P   +IA +IAEFFP A LI+
Sbjct:    57 SVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQS-PGPLALKIAGRIAEFFPRAVLIM 115

Query:   121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIV-D-QTTLSSVSTLIQRNISRHLVDF 178
             LDN+KL    +   +IV +N   +W P  KN ++  D + +   V  L++    +HLVDF
Sbjct:   116 LDNKKLVTRPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDF 175

Query:   179 DNHLDNLSADWTNSELN 195
             D HLD++  DWTN  LN
Sbjct:   176 DCHLDDIRQDWTNQRLN 192

GO:0005737 "cytoplasm" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=ISO

ZFIN|ZDB-GENE-040426-2692 emc8 "ER membrane protein complex subunit 8" [Danio rerio (taxid:7955)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/200 (40%), Positives = 120/200 (60%)

Query:     4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPK-KLTYVDAIPLFHLCLQVTP 62
             +  T +AYCKM+LHA KYPHC++NG+L+A      K++P+  +  VD +PLFH  L + P
Sbjct:     3 LKLTTQAYCKMLLHAAKYPHCAVNGLLVAEK-HKKKDNPRDSVLCVDCVPLFHGALALAP 61

Query:    63 MIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQ--SRIADKIAEFFPAACLIV 120
             M+E+ALT I ++ + N  VIAGYY ANE IK+    +P Q   ++A +I+E F  A +I+
Sbjct:    62 MLEVALTLIDTWCKENKYVIAGYYQANERIKET---RPNQVAEKVAARISENFSEAAMIM 118

Query:   121 LDNRKLTQTMQESALIVAQNSDGKWKPVSKNS-IIVDQTTLSSVSTLIQRNIS-RHLVDF 178
             +DN + T       L +  + D KWK    ++    D      ++  +  N S   LVDF
Sbjct:   119 MDNSRFTMECFVPVLFIYDHHDNKWKCREPSTDCFEDWLEAQKITAALLENKSYESLVDF 178

Query:   179 DNHLDNLSADWTNSELNEII 198
             DNHLD+L  DWTN E+N+ +
Sbjct:   179 DNHLDDLRNDWTNPEINKSV 198

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E2QSX7 FAM158A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 84/198 (42%), Positives = 120/198 (60%)

Query:     1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
             M E+  + RAY KM LHA +YPH S+NG+LLA   P+ + S + L   D +PLFH  L +
Sbjct:     1 MGEVEISARAYGKMCLHAARYPHASVNGLLLA---PSPR-SGECLCLTDCVPLFHSHLAL 56

Query:    61 TPMIEIALTQ-ISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLI 119
             + M+E+AL Q +  +    GL++AGYY AN  + D S   P   +IA +IAEFFP A L+
Sbjct:    57 SVMLEVALNQQVDVWGAQAGLIVAGYYHANAALDDQSAG-PLALKIAGRIAEFFPDAVLV 115

Query:   120 VLDNRKLTQTMQESALIVAQNSDGKWKPVSKNSIIV-D-QTTLSSVSTLIQRNISRHLVD 177
             +LDN+KL        +IV +N   +W P  KN ++  D + +   V  L++    +HLVD
Sbjct:   116 MLDNQKLVPQPHVPPVIVLENHGLRWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVD 175

Query:   178 FDNHLDNLSADWTNSELN 195
             FD HLD++  DWTN +LN
Sbjct:   176 FDCHLDDIRQDWTNQQLN 193

GO:0072546 "ER membrane protein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5U1W7	EMC9_RAT	No assigned EC number	0.4306	0.9558	0.9466	yes	N/A
Q9Y3B6	EMC9_HUMAN	No assigned EC number	0.4108	0.9558	0.9375	yes	N/A
Q9W1Y1	EMC89_DROME	No assigned EC number	0.4726	0.9264	0.9310	yes	N/A
Q9DB76	EMC9_MOUSE	No assigned EC number	0.4257	0.9558	0.9466	yes	N/A
Q55FM0	EMC89_DICDI	No assigned EC number	0.2828	0.8970	0.9531	yes	N/A
Q9FG71	EMC89_ARATH	No assigned EC number	0.2935	0.8921	0.875	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	204
cd08060	182	cd08060, MPN_UPF0172, Mov34/MPN/PAD-1 family: UPF0	9e-80
pfam03665	195	pfam03665, UPF0172, Uncharacterized protein family	7e-74
cd07767	116	cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain	3e-09

>gnl|CDD|163691 cd08060, MPN_UPF0172, Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p)

 Score =  235 bits (602), Expect = 9e-80
 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 8/188 (4%)

Query: 6   FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIE 65
            +  AY KM+LHA KYPHC++NG+LL       K S   +   DA+PLFH CL + PM+E
Sbjct: 1   LSTLAYVKMLLHAAKYPHCAVNGLLLG-----KKSSGGSVEITDAVPLFHSCLALAPMLE 55

Query: 66  IALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK 125
           +AL  + +Y +S+GLVI GYY ANE + D S   P   +IADKIAE F  ACL+++DN K
Sbjct: 56  VALALVDAYCKSSGLVIVGYYQANERLDDSSPS-PVAKKIADKIAENFSNACLLMVDNEK 114

Query: 126 LTQTMQESALIVAQNSDGKWKPVSKNSIIVDQT--TLSSVSTLIQRNISRHLVDFDNHLD 183
           LT   + +AL+V ++  G+WK      I +         +S L+     R+LVDFD+HLD
Sbjct: 115 LTLDCKGNALVVYKDKGGRWKVKELRGINLLLWESANEILSALLSSKAYRNLVDFDDHLD 174

Query: 184 NLSADWTN 191
           ++S DW N
Sbjct: 175 DISLDWLN 182

This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity. Length = 182

>gnl|CDD|217666 pfam03665, UPF0172, Uncharacterized protein family (UPF0172)

 Score =  220 bits (564), Expect = 7e-74
 Identities = 88/200 (44%), Positives = 115/200 (57%), Gaps = 11/200 (5%)

Query: 1   MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV 60
           M+E+  +  AY KMILHA KYPHC++NG+LL             +   DA+PLFH  L +
Sbjct: 1   MTEVEISPLAYAKMILHAAKYPHCAVNGLLLG-----KSTKSSSVLITDAVPLFHSTLAL 55

Query: 61  TPMIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIV 120
            PM+E+AL Q+ SYA+  GLVI GYY ANE   D S   P   +IADKIAE F  A L++
Sbjct: 56  APMLEVALAQVESYAKQKGLVIVGYYHANERFDDSSPS-PVAKKIADKIAENFNNAVLLL 114

Query: 121 LDNRKLTQTMQESALIVAQ---NSDGKWKPVSKNSIIVDQT--TLSSVSTLIQRNISRHL 175
           +DN KL    +  AL V +       +WK   K+   V+        +S L+Q    R L
Sbjct: 115 VDNEKLESDPRVPALQVYEKDGKKGWRWKKADKSLEAVEDWEEANEILSALLQSGAYRQL 174

Query: 176 VDFDNHLDNLSADWTNSELN 195
           VDFD+HLD++S DW N ELN
Sbjct: 175 VDFDDHLDDISKDWLNQELN 194

In Chlamydomonas reinhardtii the protein TLA1 (truncated light-harvesting chlorophyll antenna size) apparently regulates genes that define the chlorophyll-a antenna size in the photosynthetic apparatus. This family was formerly known as UPF0172. Length = 195

>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 12  CKMILHAVKYPH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQ 70
            KM L A K  +   + G+L            KK+  VD +                L  
Sbjct: 1   LKMFLDAAKSINGKEVIGLLYG-------SKTKKVLDVDEVIAVPFDEGDKDDNVWFLMY 53

Query: 71  ISSYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDN 123
           +     + GL I G+Y  +       +  P      +    +FP   +I++D 
Sbjct: 54  LDFKKLNAGLRIVGWYHTHPKPS--CFLSPNDLATHELFQRYFPEKVMIIVDV 104

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. JAB1 is a component of the COP9 signalosome (CSN), a regulatory particle of the ubiquitin (Ub)/26S proteasome system occurring in all eukaryotic cells; it cleaves the ubiquitin-like protein NEDD8 from the cullin subunit of the SCF (Skp1, Cullins, F-box proteins) family of E3 ubiquitin ligases. AMSH (associated molecule with the SH3 domain of STAM, also known as STAMBP), a member of JAMM/MPN+ deubiquitinases (DUBs), specifically cleaves Lys 63-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. Similarly, BRCC36, part of the nuclear complex that includes BRCA1 protein and is targeted to DNA damage foci after irradiation, specifically disassembles K63-linked polyUb. BRCC36 is aberrantly expressed in sporadic breast tumors, indicative of a potential role in the pathogenesis of the disease. Some variants of the JAB1/MPN domains lack key residues in their JAMM motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Mov34/PSMD7, Rpn8, CSN6, Prp8p, and the translation initiation factor 3 subunits f (p47) and h (p40) do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PF03665	196	UPF0172: Uncharacterised protein family (UPF0172);	100.0
KOG3289|consensus	199		100.0
cd08060	182	MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family	100.0
cd07767	116	MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al	99.7
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	98.97
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	98.92
cd08057	157	MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai	98.85
smart00232	135	JAB_MPN JAB/MPN domain. Domain in Jun kinase activ	98.83
PF01398	114	JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte	98.8
cd08067	187	MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu	98.71
cd08062	280	MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w	98.67
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	98.44
cd08058	119	MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w	98.39
cd08063	288	MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit	98.36
PLN03246	303	26S proteasome regulatory subunit; Provisional	98.33
cd08068	244	MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun	98.2
cd08066	173	MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ	98.11
KOG1554|consensus	347		97.67
cd08070	128	MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit	97.55
PF14464	104	Prok-JAB: Prokaryotic homologs of the JAB domain;	96.55
cd08072	117	MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1	96.47
KOG1556|consensus	309		95.92
COG1310	134	Predicted metal-dependent protease of the PAD1/JAB	94.19
cd08059	101	MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains	92.39
TIGR02256	131	ICE_VC0181 integrative and conjugative element pro	92.34
KOG1555|consensus	316		92.23
KOG2975|consensus	288		91.57
KOG1560|consensus	339		89.47
cd08073	108	MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains	82.49

>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function

Probab=100.00  E-value=2e-78  Score=509.82  Aligned_cols=191  Identities=51%  Similarity=0.879  Sum_probs=179.2

Q ss_pred             CCceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCc
Q psy10969          1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGL   80 (204)
Q Consensus         1 M~~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l   80 (204)
                      |++|+||++||+||+|||||||||+|||||||++.    ++++.|.|+|||||||++++|+||||+||+|||+||+++|+
T Consensus         1 m~~v~is~~AY~K~~LHaaKyP~~aVnGvLlg~~~----~~~~~v~i~DaVPLfH~~~~L~PmlEvAL~qvd~~~~~~gl   76 (196)
T PF03665_consen    1 MSSVEISSRAYAKMILHAAKYPHCAVNGVLLGKSS----KSSSEVEIVDAVPLFHHWLSLSPMLEVALAQVDAYAKSNGL   76 (196)
T ss_pred             CceEEEcHHHHHHHHHHhccCCCCceeeEEEeccC----CCCceEEEeeceeccccccCcchHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999873    34445999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEE---ecCCceeeccCC-ccccc
Q psy10969         81 VIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQ---NSDGKWKPVSKN-SIIVD  156 (204)
Q Consensus        81 ~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~---~~~~~W~~~~~~-~~~~~  156 (204)
                      +|||||||||+++|.+|+ ++|+|||+||+++|++||++||||+||+..++.+++.+|+   .++++|++.++. ..+..
T Consensus        77 ~IvGyY~Ane~~~d~~~~-~~a~kiad~I~~~~~~a~ll~idn~kl~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  155 (196)
T PF03665_consen   77 VIVGYYQANERLDDNSPS-PVAEKIADKIAENFSDACLLMIDNKKLSSDCKAPAISVYQRDGNSGGKWKSKDKSSVLLES  155 (196)
T ss_pred             EEEEEEEeccccccCCCC-HHHHHHHHHHHhhCCCcEEEEEECcccccccCCCcceeeeeeccCCCceeecCCCceeeeC
Confidence            999999999999999999 9999999999999999999999999999988999999999   677899998754 44444


Q ss_pred             -cchHHHHHHHHhhcccCcccccccccCCCCCCCCChHHHH
Q psy10969        157 -QTTLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNE  196 (204)
Q Consensus       157 -~~~~~~~~~~l~~~~~~~lvDFDdHLddi~~DW~N~~l~~  196 (204)
                       +++.++++.++++++|++|+|||||||||++||+|++||+
T Consensus       156 ~~~~~~~~~~~l~~~~~~~lvDFDdHLddi~~DW~N~~ln~  196 (196)
T PF03665_consen  156 WEEALEIVSDLLKSKKYRQLVDFDDHLDDISKDWLNPELNK  196 (196)
T ss_pred             cHHHHHHHHHHHHhCCcCcccchhhccCCCccccCChhhcC
Confidence             8899999999999999999999999999999999999985

>KOG3289|consensus

Probab=100.00  E-value=1.5e-78  Score=498.24  Aligned_cols=195  Identities=43%  Similarity=0.748  Sum_probs=188.3

Q ss_pred             CCceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCc
Q psy10969          1 MSEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGL   80 (204)
Q Consensus         1 M~~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l   80 (204)
                      |++|++|++||+||+||||||||++|||+|||..    +++|++++|+|||||||+++.|+|||||||++||+||.+.|+
T Consensus         1 m~~veis~~aY~kmiLH~akyph~aVnGLLla~~----~~kg~~v~itdcVPLfH~~laLaPmlEvAl~lId~~~~~~Gl   76 (199)
T KOG3289|consen    1 MGEVEISALAYVKMILHAAKYPHAAVNGLLLAPA----TGKGECVEITDCVPLFHSHLALAPMLEVALNLIDVWGAQAGL   76 (199)
T ss_pred             CCceeehhhHHHHHHHHhccCcccceeeEEEecc----CCCCCeEEEEecchhhccccccccHHHHHHHHHHHHHHhcCe
Confidence            8999999999999999999999999999999976    356789999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeeccCC-ccccc-cc
Q psy10969         81 VIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVD-QT  158 (204)
Q Consensus        81 ~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~~~~-~~~~~-~~  158 (204)
                      +|+||||||||++|.++. ++|.||||||+|+||+|++||+||++|+.+++.|++++|+.++.+|++++++ ..+.+ ++
T Consensus        77 viaGyy~Ane~~~D~s~~-~~A~kiadrIse~f~~A~ilv~dn~~l~~~~e~~~v~v~e~~g~rW~~~d~~~~~~~d~~e  155 (199)
T KOG3289|consen   77 VIAGYYHANERVNDQSLN-PVALKIADRISEFFPDAAILVLDNKKLVPQCERPPVIVLEDQGLRWRPKDKTLVQWSDWLE  155 (199)
T ss_pred             EEEEEeecCCCccccCcc-HHHHHHHHHHHhhCCCCeEEEEeccccccccCCCCEEEeeccCcceeecCCchhhhhcchh
Confidence            999999999999999999 9999999999999999999999999999999999999999889999999877 77888 89


Q ss_pred             hHHHHHHHHhhcccCcccccccccCCCCCCCCChHHHHHHHH
Q psy10969        159 TLSSVSTLIQRNISRHLVDFDNHLDNLSADWTNSELNEIIEK  200 (204)
Q Consensus       159 ~~~~~~~~l~~~~~~~lvDFDdHLddi~~DW~N~~l~~~i~~  200 (204)
                      ++.+++.+|++++|++|+|||||||||++||+|+.||+.+.|
T Consensus       156 ~~~~ls~ll~~~~~r~LvDfDnHLDd~~~DwtN~~Lnn~l~~  197 (199)
T KOG3289|consen  156 GRQMLSALLESRAYRDLVDFDNHLDDPRKDWTNPRLNNQLTQ  197 (199)
T ss_pred             HHHHHHHHHhhhhhhhhcchhhcccCchhcccChhhhhhhhh
Confidence            999999999999999999999999999999999999999876

>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p)

Probab=100.00  E-value=1.9e-61  Score=402.62  Aligned_cols=180  Identities=46%  Similarity=0.812  Sum_probs=168.2

Q ss_pred             ecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEE
Q psy10969          6 FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGY   85 (204)
Q Consensus         6 is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGy   85 (204)
                      |+.+||.||++||+|||+++|||+|||+.     ..++.+.|+|+|||||+++.|+||+||||.|||.||+++|+.||||
T Consensus         1 is~~ay~ki~~HA~k~p~~evcGlLlG~~-----~~~~~~~V~d~vPl~h~~~~l~P~~Eval~~ve~~~~~~gl~IvG~   75 (182)
T cd08060           1 LSTLAYVKMLLHAAKYPHCAVNGLLLGKK-----SSGGSVEITDAVPLFHSCLALAPMLEVALALVDAYCKSSGLVIVGY   75 (182)
T ss_pred             CCHHHHHHHHHHHHHcCCchheEEEEeee-----cCCCCEEEEEEEEcCCCccccCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            68999999999999999999999999986     2255689999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeeccCC-ccccc-cchHHHH
Q psy10969         86 YLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPVSKN-SIIVD-QTTLSSV  163 (204)
Q Consensus        86 Y~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~~~~-~~~~~-~~~~~~~  163 (204)
                      ||||++++|.+|+ ++|+||||||+++||+||++||||+|++..+..+++.+|..++++|++++.. ..+.. +++.+.+
T Consensus        76 Yhsh~~~~d~~~~-~~a~kIadki~~~~~~a~ll~vdn~~l~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~  154 (182)
T cd08060          76 YQANERLDDSSPS-PVAKKIADKIAENFSNACLLMVDNEKLTLDCKGNALVVYKDKGGRWKVKELRGINLLLWESANEIL  154 (182)
T ss_pred             EecCCcccCCCCc-HHHHHHHHHHHHhCCCCEEEEEeCccccccccCCceEEEEecCCCceEcccccchhccchhHHHHH
Confidence            9999999999999 9999999999999999999999999999888888999999999999987644 33433 6789999


Q ss_pred             HHHHhhcccCcccccccccCCCCCCCCC
Q psy10969        164 STLIQRNISRHLVDFDNHLDNLSADWTN  191 (204)
Q Consensus       164 ~~~l~~~~~~~lvDFDdHLddi~~DW~N  191 (204)
                      +.++++++|++|+|||||||||++||+|
T Consensus       155 ~~~l~~~~~~~l~DFDdHLddi~~Dw~N  182 (182)
T cd08060         155 SALLSSKAYRNLVDFDDHLDDISLDWLN  182 (182)
T ss_pred             HHHHhhCcccccccchhcccCCccCcCC
Confidence            9999999999999999999999999998

This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.

>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains

Probab=99.70  E-value=2.9e-16  Score=118.94  Aligned_cols=107  Identities=20%  Similarity=0.223  Sum_probs=92.6

Q ss_pred             HHHHhhhhcCC-CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeCC
Q psy10969         12 CKMILHAVKYP-HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANE   90 (204)
Q Consensus        12 ~K~iLHAaKyP-~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~Ane   90 (204)
                      +|+++|++|+| ...|+|+|+|+..      ++ +.+++++|++|......|+.+.++.+++.++...|+.||||||++.
T Consensus         1 ~k~il~~a~~~~~~ev~G~L~G~~~------~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVGwyhshp   73 (116)
T cd07767           1 LKMFLDAAKSINGKEVIGLLYGSKT------KK-VLDVDEVIAVPFDEGDKDDNVWFLMYLDFKKLNAGLRIVGWYHTHP   73 (116)
T ss_pred             CHhHHHHHhcCCCcEEEEEeEEEEc------CC-EEEEEEEEecccCCCCCccHHHHHHHHHHHHhcCCCeEEEEEEcCC
Confidence            58999999998 7999999999872      22 7789999999998888999999999999999999999999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q psy10969         91 NIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLT  127 (204)
Q Consensus        91 ~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~  127 (204)
                      ... ..++ +......+++++.+++++++++|.++..
T Consensus        74 ~~~-~~~s-~~dv~~~~~~q~~~~~~v~li~~~~~~~  108 (116)
T cd07767          74 KPS-CFLS-PNDLATHELFQRYFPEKVMIIVDVKPKD  108 (116)
T ss_pred             CCC-CccC-HHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence            654 2466 6666677999999999999999998864

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=98.97  E-value=1.8e-08  Score=88.79  Aligned_cols=130  Identities=12%  Similarity=0.070  Sum_probs=88.4

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh--HHHHHHHHHH-HHh--hh
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP--MIEIALTQIS-SYA--QS   77 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP--mlEvAL~qvd-~y~--~~   77 (204)
                      .|.|++.|+.||+.||.+-....|+|+|+|..      .++.+.|+||+|+-|.......  -.|.-..+++ ...  ..
T Consensus        11 ~V~Is~~allkil~Ha~~~~p~Ev~GlLlG~~------~~~~v~Vt~~fp~p~~~t~~~v~~~~e~~~~m~~~~~~~~~~   84 (268)
T cd08069          11 KVYISSLALLKMLKHARAGGPIEVMGLMLGKV------DDYTIIVVDVFALPVEGTETRVNAQDEFQEYMVQYEMLKQTG   84 (268)
T ss_pred             EEEECHHHHHHHHHHHhccCCceEEEEEEeee------cCCeEEEEEEEECCcCCCCCceeccHHHHHHHHHHHHHHHhC
Confidence            48899999999999998887789999999986      3557999999999886543210  0122222232 122  34


Q ss_pred             CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         78 NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        78 ~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      .++.|||+||...... .-|| ..-..+-..-+...+.++.|++|..+=. ..+...+..|...
T Consensus        85 ~~~~vVGWYHSHP~~g-~~~S-~~Dv~tq~~yq~~~~~~V~lViDP~~t~-~~g~~~i~Afr~~  145 (268)
T cd08069          85 RPENVVGWYHSHPGYG-CWLS-GIDVNTQQLNQQLQDPFVAVVVDPIRSL-VKGKVVIGAFRTI  145 (268)
T ss_pred             CCceeEeeeccCCCcC-CcCC-HHHHHHHHHHHhcCCCcEEEEEeCCccc-cCCcceeeEEEEE
Confidence            7799999999986655 3577 6666666666666678899999963321 1233445554444

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=98.92  E-value=4.4e-08  Score=86.06  Aligned_cols=126  Identities=14%  Similarity=0.167  Sum_probs=86.8

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh-----HHHHHHHHHHHHhhh
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP-----MIEIALTQISSYAQS   77 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP-----mlEvAL~qvd~y~~~   77 (204)
                      .|.|++.++.||+-||-+-....|+|+|||..      .++.++|++|.|+=|....-.+     ..+--+.+++ .+++
T Consensus         2 ~V~I~~~vllkIv~H~~~~~p~~v~G~LLG~~------~~~~leVtn~Fp~P~~~~~~~~~~~~~~~~yq~~m~~-~~r~   74 (266)
T cd08065           2 SVQIDGLVVLKIIKHCKEELPELVQGQLLGLD------VGGTLEVTNCFPFPKSEEDDSDRADEDIADYQLEMMR-LLRE   74 (266)
T ss_pred             EEEEeHHHHHHHHHHHhcCCCcEEEEEEeeeE------cCCEEEEEeccCCCCCCCCCcchhhhhHHHHHHHHHH-HHHH
Confidence            48999999999999999999999999999987      3568999999999997643332     1122233444 3567


Q ss_pred             CCc--eEEEEEEeCCCCCCCCCCHHHHHHHHHHH--HhhCCCcEEEEEeCccccccccCccEEEEEecC
Q psy10969         78 NGL--VIAGYYLANENIKDVSYDKPYQSRIADKI--AEFFPAACLIVLDNRKLTQTMQESALIVAQNSD  142 (204)
Q Consensus        78 ~~l--~IvGyY~Ane~~~d~~~~~~~a~kIadkI--~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~  142 (204)
                      .|.  .||||||... .+ ...+ +.  .|-...  ....++++.|++|-.+-  ..+...+..|....
T Consensus        75 v~~~e~iVGWY~S~p-~~-~~~~-~s--~id~~~~~q~~~~~~v~Li~D~~~s--~~g~l~lkAyrl~~  136 (266)
T cd08065          75 VNVDHNHVGWYQSTY-LG-SFFT-RD--LIETQYNYQEAIEESVVLVYDPSKT--SQGSLSLKAYRLSE  136 (266)
T ss_pred             hCCCCcEEEeEeecC-CC-CcCC-HH--HHHHHHHHhccCCCCEEEEECCCcc--cccceeeEEEEEcH
Confidence            777  9999999876 33 2222 11  121211  22237789999997653  24556777777664

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

Probab=98.85  E-value=1.8e-07  Score=75.75  Aligned_cols=130  Identities=11%  Similarity=0.068  Sum_probs=92.3

Q ss_pred             eeecHHHHHHHHhhhhcCC--CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccc--hhHHHHHHHHHHHHhh-hC
Q psy10969          4 ISFTDRAYCKMILHAVKYP--HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQV--TPMIEIALTQISSYAQ-SN   78 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKyP--~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~L--sPmlEvAL~qvd~y~~-~~   78 (204)
                      |.|.+.+..||+=|+.+-.  ...|.|+|||..      .++.+.|+||.|+-|..-.-  .--.|-.-.+++.+-+ -.
T Consensus         1 V~ihplvll~I~dh~~R~~~~~~~v~G~LlG~~------~~~~veV~nsF~lp~~~~~~~~~~d~~y~~~m~~~~~~v~~   74 (157)
T cd08057           1 VQLHPLVLLNISDHYTRRKYGIKRVIGVLLGYV------DGDKIEVTNSFELPFDEEEESIFIDTEYLEKRYNLHKKVYP   74 (157)
T ss_pred             CEEccHHHhhHHHHHHhccCCCCeEEEEEEeEE------eCCEEEEEEeEEccccCCCcchhhhHHHHHHHHHHHHHhCC
Confidence            5789999999999998887  789999999987      36689999999999965322  1223344445554433 25


Q ss_pred             CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhh-CCCcEEEEEeCccccccccCccEEEEEecC
Q psy10969         79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEF-FPAACLIVLDNRKLTQTMQESALIVAQNSD  142 (204)
Q Consensus        79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~-~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~  142 (204)
                      +..+||||+...... +.+. .....|-+.+... .+.++++++|-.+.+ ..+.-++..|....
T Consensus        75 ~~~vVGWY~~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~v~L~~D~~~~~-~~~~l~i~ay~~~~  136 (157)
T cd08057          75 QEKIVGWYSIGSNNS-NEIS-KSDNSLHSQFSLISEENPLILILDPSLQS-DSEKLEISTFTSAQ  136 (157)
T ss_pred             CCCEEEEEeecCCCC-CCCC-hhHHHHHHHHHhccCCCCEEEEEcCCccc-CCCcccEEEEEEec
Confidence            689999999875543 3455 5666677777665 677899999975532 23445677776664

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import

>smart00232 JAB_MPN JAB/MPN domain

Probab=98.83  E-value=4.1e-07  Score=70.09  Aligned_cols=126  Identities=12%  Similarity=0.104  Sum_probs=87.6

Q ss_pred             eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCccc----chhHHHHHHHHHHH-HhhhC
Q psy10969          4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ----VTPMIEIALTQISS-YAQSN   78 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~----LsPmlEvAL~qvd~-y~~~~   78 (204)
                      +.+.+.++.||+-|+.+.....++|+|+|+.      .++.+.|++++|+-...-.    --++ +---.+.+. .....
T Consensus         2 v~i~~~v~~~i~~h~~~~~p~e~~G~L~G~~------~~~~~~i~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   74 (135)
T smart00232        2 VKVHPLVPLNILKHAIRDGPEEVCGVLLGKS------NKDRPEVKEVFAVPNEPQDDSVQEYDE-DYSHLMDEELKKVNK   74 (135)
T ss_pred             EEEcHHHHHHHHHHHhcCCCcEEEEEEEEEE------cCCEEEEEEEEecCcCCCCcchhhhhh-hHHHHHHHHHHhhCC
Confidence            6899999999999999998899999999987      3457999999998755311    0111 111122222 33468


Q ss_pred             CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEe
Q psy10969         79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQN  140 (204)
Q Consensus        79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~  140 (204)
                      |+.+||+||...... ..|+ ..-..++.......+.++.+.+|..+-..  +.-++..|..
T Consensus        75 ~~~~vGwyhshp~~~-~~pS-~~D~~~~~~~~~~~~~~~~~~v~~~~s~~--g~~~~~af~~  132 (135)
T smart00232       75 DLEIVGWYHSHPDES-PFPS-EVDVATHESYQAPWPISVVLIVDPIKSFQ--GRLSLRAFRL  132 (135)
T ss_pred             CceEEEEEEcCCCCC-CCcC-HHHHHHHHHHHhcCCceEEEEECCCcccc--CcEEEEEEEe
Confidence            899999999976643 3577 77777888877777777777787665431  2334555543

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.

>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors

Probab=98.80  E-value=5.3e-08  Score=74.21  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCC-ceEEEeceecccCcccch----hHHHHHHHHHHHHhhh
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPK-KLTYVDAIPLFHLCLQVT----PMIEIALTQISSYAQS   77 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~-~v~i~DaVPLfH~~l~Ls----PmlEvAL~qvd~y~~~   77 (204)
                      .|.|++.+..||+-|+.+.+...|.|+|+|...      ++ .+.|+|++|+=|....-.    +.... ..+++.+-+-
T Consensus         5 ~V~i~p~vll~i~~h~~r~~~~~v~G~LlG~~~------~~~~v~I~~~f~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~   77 (114)
T PF01398_consen    5 TVQIHPLVLLKIIDHATRSSPNEVIGLLLGTQD------GDNTVEITNSFPVPHSESEDDCDMDDEDFQ-KKMIELLKKV   77 (114)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHCTEEEEEEEEEEE------TT-EEEEEEEEEESEEEESSEEEEECCHHH-HHHHHHHHHC
T ss_pred             EEEECHHHHHHHHHHHhcCCCCEEEEEEEEEec------CceEEEEEEEEEeeEecCccccccchhhHH-HHHHhhhccc
Confidence            478999999999999999888899999999873      44 899999999998754321    12122 4455555332


Q ss_pred             -CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy10969         78 -NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP  114 (204)
Q Consensus        78 -~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~  114 (204)
                       ..+.||||||...... ..|+ +.-..+-...++..+
T Consensus        78 ~~~~~iVGWY~s~p~~~-~~~S-~~di~~q~~~q~~~~  113 (114)
T PF01398_consen   78 NPNLEIVGWYHSHPNIS-CFPS-PTDIETQKQYQRMNP  113 (114)
T ss_dssp             STTSEEEEEEEEESSS--SS---HHHHHHHHHHHHHTT
T ss_pred             cccceEEEEEEccCCcc-ccCC-HHHHHHHHHHHHhCC
Confidence             4599999999876554 3577 777777777766554

This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.

>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase

Probab=98.71  E-value=1.2e-06  Score=73.72  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=84.5

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCc----ccchhHHHHHHHHHHHHhhhC
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLC----LQVTPMIEIALTQISSYAQSN   78 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~----l~LsPmlEvAL~qvd~y~~~~   78 (204)
                      .|+||..|..||+.||-.-. ..|+|+|+|...    ..+..+.|+++.|.-=..    ....|.-+   ..+..++++.
T Consensus         6 ~V~Is~~all~m~~Ha~~~~-~EvcGlL~G~~d----~~~~~l~Vt~~~p~~~~~~~~~~e~dp~~q---~e~~~~l~~~   77 (187)
T cd08067           6 KVTVSSNALLLMDFHCHLTT-SEVIGYLGGTWD----PNTQNLTILQAFPCRSRLTGLDCEMDPVSE---TEIRESLESR   77 (187)
T ss_pred             EEEECHHHHHHHHHHhcCCC-cEEEEEEEeEEc----CCCCeEEEEEEEecCCCCCCcccccCHHHH---HHHHHHHHHc
Confidence            48899999999999999988 999999999852    234678999999976422    12344433   3455667899


Q ss_pred             CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC-------CcEEEEEeCccccccccCccEEEEEecC
Q psy10969         79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP-------AACLIVLDNRKLTQTMQESALIVAQNSD  142 (204)
Q Consensus        79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~-------~a~ll~iDn~kl~~~~~~~~l~~~~~~~  142 (204)
                      |+.+||+||...... ..|| ..-..---.-+..++       ..+.++++-..-........+..|....
T Consensus        78 gl~vVGwYHSHP~~~-~~pS-~~Di~tQ~~yQ~~~~~~~~~~~p~v~~I~~P~~~~~~~~~s~i~~f~~~~  146 (187)
T cd08067          78 GLSVVGWYHSHPTFP-PNPS-LRDIDTQLDYQIMFKGSDSGYEPCVGLICSPYDRRNSTPESQITCFWVMP  146 (187)
T ss_pred             CCEEEEEEecCCCCC-cCCC-HHHHHHHHHHHhhccccccCCCCeEEEEEccccCCCCCCCCcEEEEEEEC
Confidence            999999999987666 5677 532222222333333       2466676543222112233455555544

This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p

>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

Probab=98.67  E-value=5.6e-07  Score=79.87  Aligned_cols=124  Identities=13%  Similarity=0.150  Sum_probs=89.1

Q ss_pred             ceeecHHHHHHHHhhhhcCC---CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh-----HHHHHHHHHHHH
Q psy10969          3 EISFTDRAYCKMILHAVKYP---HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP-----MIEIALTQISSY   74 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP---~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP-----mlEvAL~qvd~y   74 (204)
                      +|.|.+.+..||+=|+.+.+   ...|.|+|||..      .++.++|+||.|+-|....-.|     -.+-.-.+.+.+
T Consensus         2 ~V~ihplVLl~I~dh~~R~~~~~~~~ViG~LLG~~------~~~~veItnsF~~p~~~~~~~~~~~~~d~~y~~~m~~~~   75 (280)
T cd08062           2 KVVVHPLVLLSVVDHYNRVAKGTSKRVVGVLLGSW------KKGVLDVTNSFAVPFEEDEKDPSVWFLDHNYLENMYGMF   75 (280)
T ss_pred             eEEEehHHHHHHHHHHhhhcCCCCceEEEEEEEEE------eCCEEEEEEeeecCccCCCCCcchhhhhHHHHHHHHHHH
Confidence            58899999999999999875   456999999987      3468999999999986533333     123333445544


Q ss_pred             hhh-CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         75 AQS-NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        75 ~~~-~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      -+- .+..+||||+....++      +....|-+-+.+.++++++++||-..   ..+..++.+|...
T Consensus        76 kkv~~~e~vVGWY~tg~~~~------~~d~~ih~~~~~~~~~pv~l~vd~~~---~~~~lpi~aY~s~  134 (280)
T cd08062          76 KKVNAKEKIVGWYSTGPKLR------PNDLDINELFRRYCPNPVLVIIDVRP---KDLGLPTEAYIAV  134 (280)
T ss_pred             HHhCCCCCeEEEecCCCCCC------cchHHHHHHHHHhCCCCEEEEEecCC---CCCCCceEEEEEe
Confidence            332 5599999999875543      34446667777778889999998433   2344678888775

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=98.44  E-value=3e-06  Score=74.35  Aligned_cols=123  Identities=12%  Similarity=0.080  Sum_probs=86.4

Q ss_pred             eeecHHHHHHHHhhhhc--CCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhH--HHHHHHHHHHHhh-hC
Q psy10969          4 ISFTDRAYCKMILHAVK--YPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPM--IEIALTQISSYAQ-SN   78 (204)
Q Consensus         4 v~is~~AY~K~iLHAaK--yP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPm--lEvAL~qvd~y~~-~~   78 (204)
                      |.|.+.+..||+=|+.+  .....|.|.|||..      .++.++|+||.|+=|....-...  .|-...+.+.|-+ ..
T Consensus         1 v~ihPlVll~I~dH~~R~~~~~~~V~G~LLG~~------~~~~veItnsF~~p~~~~~~~~~~d~~y~~~m~~~~kkv~~   74 (265)
T cd08064           1 VRVHPVVLFSILDSYERRNEGQERVIGTLLGTR------SEGEVEITNCFAVPHNESEDQVAVDMEYHRTMYELHQKVNP   74 (265)
T ss_pred             CEEccHHHHhHHHHHhhhcCCCcEEEEEEEEEE------eCCEEEEEeCeecceeCCCCeEEEcHHHHHHHHHHHHHhCC
Confidence            57899999999999887  33478999999987      34689999999999854221111  2233445554432 36


Q ss_pred             CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC--CcEEEEEeCccccccccCccEEEEEec
Q psy10969         79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP--AACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~--~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      +..+||||++...     ++ +....|-+.+++.++  +++++.+|-..-.   +..++.+|...
T Consensus        75 ~~~vVGWY~tg~~-----~~-~~~~~Ih~~~~~~~~~~~pI~L~~D~~~~~---~~l~i~ay~~~  130 (265)
T cd08064          75 KEVIVGWYATGSE-----IT-EHSALIHDYYSRECTSYNPIHLTVDTSLDD---GKMSIKAYVSS  130 (265)
T ss_pred             CCcEEeeeeCCCC-----CC-ccHHHHHHHHHhhCCCCCCEEEEEeCCCCC---CCcceEEEEEE
Confidence            6899999998753     44 455567777877777  8899998864322   24677888764

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic

Probab=98.39  E-value=9.5e-06  Score=62.70  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=69.5

Q ss_pred             HHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeC
Q psy10969         10 AYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLAN   89 (204)
Q Consensus        10 AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~An   89 (204)
                      |..||+-||.+-....|+|+|+|....+ ......+.|+++.|.-...   .|. |  ..++.......|+.+||+||+.
T Consensus         2 ~~~~i~~ha~~~~p~E~cGlL~G~~~~~-~~~~~~~~v~~~~p~~~~~---~~~-~--~~~~~~~~~~~g~~~vG~YHSH   74 (119)
T cd08058           2 ALLKMLQHAESNTGIEVMGLLCGELTHN-EFTDKHVIVPKQSAGPDSC---TGE-N--VEELFNVQTGRPLLVVGWYHSH   74 (119)
T ss_pred             HHHHHHHHhcCCCCeEEEEEeeeEEecC-ccceeEEEEeecCCCCCCc---hhH-H--HHHHHHHHhCCCCeEEEEEecC
Confidence            6789999999987788999999975210 0113457788888864422   232 2  2233344578999999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcc
Q psy10969         90 ENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK  125 (204)
Q Consensus        90 e~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~k  125 (204)
                      .... ..|| +.-.+.-..-+...|+++.|++|-.+
T Consensus        75 P~~~-~~pS-~~Di~~~~~~q~~~p~~~~lI~s~~~  108 (119)
T cd08058          75 PTFT-AWLS-SVDIHTQASYQLMLPEAIAIVVSPKH  108 (119)
T ss_pred             CCCC-CccC-HHHHHHHHHHhccCCCeEEEEECcCC
Confidence            6555 3566 44333222223345888888887654

This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

Probab=98.36  E-value=5.5e-06  Score=73.59  Aligned_cols=127  Identities=13%  Similarity=0.166  Sum_probs=91.1

Q ss_pred             ceeecHHHHHHHHhhhhcCC------CCceeEEEeeeecCCCCCCCCceEEEeceecccCccc---chhHHHHHHHHHHH
Q psy10969          3 EISFTDRAYCKMILHAVKYP------HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ---VTPMIEIALTQISS   73 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP------~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~---LsPmlEvAL~qvd~   73 (204)
                      +|.+.+.+..+|.=|..+..      ...|.|.|||..      .|+.|+|++|.|+-|..-.   ...=.|--..+.+.
T Consensus         2 ~V~lHPlVll~I~dH~~R~~~~~~~~~~~v~G~LLG~~------~~~~veItnsF~~p~~~~~~~~~~id~~y~~~m~~~   75 (288)
T cd08063           2 SVKLHPLVILNISDHITRHRAQSQSEPPRVVGALLGQQ------DGREIEIENSFELKYDTNEDGEIVLDKEFLETRLEQ   75 (288)
T ss_pred             eEEEecceeeeHHhhHhHHhccCCCCCCcEEEEEEEEE------cCCEEEEEEEEecccccCCCCceeeCHHHHHHHHHH
Confidence            47888999999999999842      378999999976      4568999999999995422   11113334445555


Q ss_pred             Hhh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         74 YAQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        74 y~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      |-+ -.++.|||||+....    ++. +....|-+.+.+.+++++++++|-..-. ..+..++.+|...
T Consensus        76 ~kkV~~~~~vVGWY~tg~~----~~~-~~~~~Ih~~~~~~~~~pv~L~~D~~~~~-~~~~lpi~ay~s~  138 (288)
T cd08063          76 FKQVFKDLDFVGWYTTGPG----GPT-ESDLPIHKQILEINESPVLLLLDPEANA-SGKDLPVTIYESV  138 (288)
T ss_pred             HHHhccCCceEEEEecCCC----CCC-HHHHHHHHHHHhhCCCcEEEEEcccccc-CCCCCceeEEEEE
Confidence            433 256999999998644    466 7777888888888888999999865531 2345678888654

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav

>PLN03246 26S proteasome regulatory subunit; Provisional

Probab=98.33  E-value=1.4e-05  Score=71.79  Aligned_cols=124  Identities=10%  Similarity=0.160  Sum_probs=88.2

Q ss_pred             ceeecHHHHHHHHhhhhcCCC---CceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh---H--HHHHHHHHHHH
Q psy10969          3 EISFTDRAYCKMILHAVKYPH---CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP---M--IEIALTQISSY   74 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~---~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP---m--lEvAL~qvd~y   74 (204)
                      .|.+.+.+..+|+=|.-+...   ..|.|.|||..      .++.++|++|.|+-|..-.=.+   .  .+-...+.+.+
T Consensus         7 ~V~vhPlVll~I~dh~~R~~~~~~~rviG~LLG~~------~~~~ieItnsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~   80 (303)
T PLN03246          7 KVVVHPLVLLSIVDHYNRVAKDTRKRVVGVLLGSS------FRGRVDVTNSFAVPFEEDDKDPSIWFLDHNYLESMFGMF   80 (303)
T ss_pred             EEEECcHHHHHHHHHHHhccCCCCCeeEEEEEeee------cCCEEEEEeccccCcccCCCCccceeecHHHHHHHHHHH
Confidence            488999999999999988874   45999999987      3458999999999985421111   0  23344555555


Q ss_pred             hh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         75 AQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        75 ~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      -+ -.+..+||||+....+     + +....|-+-+.+.+++++++.||-..   ..+..++.+|...
T Consensus        81 k~V~~~~~vVGWY~tg~~i-----~-~~d~~IH~~~~~~~~~Pv~L~vD~~~---~~~~lpi~aY~s~  139 (303)
T PLN03246         81 KRINAKEHVVGWYSTGPKL-----R-ENDLDIHELFNDYVPNPVLVIIDVQP---KELGIPTKAYYAV  139 (303)
T ss_pred             HHhCCCCcEEeeecCCCCC-----C-cchHHHHHHHHhhCCCCeEEEEecCC---CCCCCceEEEEEE
Confidence            33 2568999999976443     3 44566777888888999999997322   2344678888754

>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

Probab=98.20  E-value=0.0001  Score=64.53  Aligned_cols=140  Identities=16%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             CceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCC-CCCCCceEEEeceecccC-----cccchhHHHH-HHHHHHHH
Q psy10969          2 SEISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTT-KESPKKLTYVDAIPLFHL-----CLQVTPMIEI-ALTQISSY   74 (204)
Q Consensus         2 ~~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~-~~~~~~v~i~DaVPLfH~-----~l~LsPmlEv-AL~qvd~y   74 (204)
                      .+|.|+..+|.||+.||..==-..|+|+|+|+...++ ...+..+.+...+|+-..     ...+.|.-.+ |..+++.+
T Consensus         2 ~~V~Is~~~l~~il~HA~~~~P~EvCGLL~G~~~~~~~~~~~~~v~i~~~~~~~~~~~s~~r~eidPee~~~a~~ea~~~   81 (244)
T cd08068           2 SKVHLSADVYLVCLTHALSTEKEEVMGLLIGEIEVSKKGEEVAIVHISAVIILRRSDKRKDRVEISPEQLSAASTEAERL   81 (244)
T ss_pred             cEEEECHHHHHHHHHHHHhCCCcceeEEEEeecccccccccceeEEEeeeccccccCCCCceEEeCHHHHHHHHHHHHHH
Confidence            4689999999999999998645899999999751000 012345656677776432     1355676433 44455544


Q ss_pred             hhh--CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEe--CccccccccCccEEEEEecCC
Q psy10969         75 AQS--NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLD--NRKLTQTMQESALIVAQNSDG  143 (204)
Q Consensus        75 ~~~--~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iD--n~kl~~~~~~~~l~~~~~~~~  143 (204)
                      .+.  .|+.|||+||...... .-|| ..-.+-...-....|..+-+.++  +..-....+.+.+..|...++
T Consensus        82 ~~~~~rgl~vVGwYHSHP~~~-a~PS-~~Dv~tq~~~q~~~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g  152 (244)
T cd08068          82 TEETGRPMRVVGWYHSHPHIT-VWPS-HVDVRTQAMYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQG  152 (244)
T ss_pred             HhhccCCceEEEEEecCCCCC-CCCC-HhHHHHHHHHHhhCCCcEEEEEEecCCccccccCCEEEEEEEecCC
Confidence            443  7899999999987655 3566 55444222222234666655553  211121234566777777654

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai

>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family

Probab=98.11  E-value=0.00013  Score=60.61  Aligned_cols=125  Identities=10%  Similarity=0.047  Sum_probs=84.3

Q ss_pred             eeecHHHHHHHHhhhhcC-C-CCceeEEEeeeecCCCCCCCCceEEEeceecccCccc--chhHHHHHHHHHHHHhhhCC
Q psy10969          4 ISFTDRAYCKMILHAVKY-P-HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ--VTPMIEIALTQISSYAQSNG   79 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKy-P-~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~--LsPmlEvAL~qvd~y~~~~~   79 (204)
                      +.|+...|-|++-||-.- | -..|+|+|.|+.      .++...|++.+..-.....  ..++-+   .++..++...|
T Consensus         4 l~Ipk~il~~~l~~A~~~~~~p~E~cGlL~G~~------~~~~~~I~~i~~~~q~~~~~~~~~~~~---~e~~~~~~~~g   74 (173)
T cd08066           4 VVVPADLMDKFLQLAEPNTSRNLETCGILCGKL------SNNAFFITHLIIPKQSGTSDSCQTTNE---EELFDFQDQHD   74 (173)
T ss_pred             EEECHHHHHHHHHHHHhCCCCCCeEEEEEEeEc------CCCeEEEEEEEeccccCCCceecCCCH---HHHHHHHHhCC
Confidence            789999999999999875 3 478999999975      2234566666322111111  111111   12445678899


Q ss_pred             ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec--C-Ccee
Q psy10969         80 LVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS--D-GKWK  146 (204)
Q Consensus        80 l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~--~-~~W~  146 (204)
                      +.++|+||.... ....|| +.-.+.--+.....|+++.++++-       ..+.+..|...  . -.|.
T Consensus        75 le~vGwyHSHP~-~~~~pS-~~Dv~t~~~~~~~~p~~~~lIvSp-------~~~~l~afrl~~~~g~~~~  135 (173)
T cd08066          75 LITLGWIHTHPT-QTCFLS-SVDLHTHCSYQLMLPEAIAIVCAP-------KYNEFGIFRLTDPPGLDEI  135 (173)
T ss_pred             CeeEEEEeccCC-CCCccC-HHHHHHHHHHHhcCCCeEEEEECC-------CCcEEeEEEeecCCcceec
Confidence            999999998644 334688 777776667777789999888863       24667777776  2 3784

AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al

>KOG1554|consensus

Probab=97.67  E-value=0.00039  Score=62.18  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEece--ecccCcccchhHHHHHHHHHHHH---hhh
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAI--PLFHLCLQVTPMIEIALTQISSY---AQS   77 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaV--PLfH~~l~LsPmlEvAL~qvd~y---~~~   77 (204)
                      .|.||..|..||+.||-.=-.-.|-|++.|+.      .|.+++|-||.  |.-=+-+-.--- +-|.+-.-+|   |+.
T Consensus        54 ~vkISalAllKm~~hA~~GgnlEiMGlm~Gkv------~g~t~IvmD~FaLPVeGTETRVNAq-~~AyEYmv~Y~e~~k~  126 (347)
T KOG1554|consen   54 HVKISALALLKMVMHARSGGNLEIMGLMQGKV------DGDTIIVMDSFALPVEGTETRVNAQ-AEAYEYMVQYIEEAKN  126 (347)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCeEEEeeecccc------cCCeEEEEeccccccccccceechH-HHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999986      57789999987  444333322211 1222222222   344


Q ss_pred             CC--ceEEEEEEeCCCCC--CCCCCHHHHHHHHHHHHhhCCCc-EEEEEeCcc
Q psy10969         78 NG--LVIAGYYLANENIK--DVSYDKPYQSRIADKIAEFFPAA-CLIVLDNRK  125 (204)
Q Consensus        78 ~~--l~IvGyY~Ane~~~--d~~~~~~~a~kIadkI~~~~~~a-~ll~iDn~k  125 (204)
                      -|  ..+|||||.....+  =+..+     -...++...|.+. +.++||-.+
T Consensus       127 ~gr~envVGWyHSHPgYgCWLSgID-----VsTQ~lNQ~fQePfvAvViDP~R  174 (347)
T KOG1554|consen  127 VGRLENVVGWYHSHPGYGCWLSGID-----VSTQMLNQRFQEPFVAVVIDPTR  174 (347)
T ss_pred             hhhhhceeeeeecCCCCCccccCcc-----hhHHHHhhhhcCCeEEEEecCcc
Confidence            44  77999999987655  12344     1234556667775 568888744

>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)

Probab=97.55  E-value=0.0032  Score=49.04  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             HHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecc--cCc----ccchhHHHHHHHHHHHHhhhCCceE
Q psy10969          9 RAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLF--HLC----LQVTPMIEIALTQISSYAQSNGLVI   82 (204)
Q Consensus         9 ~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLf--H~~----l~LsPmlEvAL~qvd~y~~~~~l~I   82 (204)
                      ..+-+|+-||.+-.-..++|+|+|+.      .+....|++.+|+=  +..    ..+.|.   .+..+...+++.|+.+
T Consensus         2 ~~~~~il~ha~~~~P~E~cGlL~G~~------~~~~~~i~~~~p~~n~~~~~~~~f~~d~~---~~~~~~~~~~~~g~~~   72 (128)
T cd08070           2 ELLEAILAHAEAEYPEECCGLLLGKG------GGVTAIVTEVYPVRNVAESPRRRFEIDPA---EQLAAQREARERGLEV   72 (128)
T ss_pred             HHHHHHHHHHHhCCCCceEEEEEeec------CCCCceEEEEEEccCCCCCCCceEEECHH---HHHHHHHHHHHCCCeE
Confidence            35779999999955688999999986      23344568888872  221    133443   3346666778899999


Q ss_pred             EEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCC
Q psy10969         83 AGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDG  143 (204)
Q Consensus        83 vGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~  143 (204)
                      ||.||...... ..|| ..-.     -.-..+....+.+..     ....+.+..|..+++
T Consensus        73 vG~~HSHP~~~-~~PS-~~D~-----~~~~~~~~~~lIv~~-----~~~~~~~~~~~~~~~  121 (128)
T cd08070          73 VGIYHSHPDGP-ARPS-ETDL-----RLAWPPGVSYLIVSL-----AGGAPELRAWRLEGG  121 (128)
T ss_pred             EEEEeCCCCCC-CCCC-HHHH-----HhccCCCCeEEEEEC-----CCCCcEEEEEEEcCC
Confidence            99999986643 3566 3322     222233344444321     112356677766654

This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A

Probab=96.55  E-value=0.0093  Score=44.10  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHH-HhhhCCceEEEEE
Q psy10969          8 DRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISS-YAQSNGLVIAGYY   86 (204)
Q Consensus         8 ~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~-y~~~~~l~IvGyY   86 (204)
                      .++|.+|+-|+...+....+|+|+|+.      .++...+++.++       ..|--+++.   .. .....|+.++|.|
T Consensus         2 ~~~~~~i~~~~~~~~p~E~~G~L~g~~------~~~~~~~~~~~~-------~~p~~~~~~---~~~~~~~~~~~~vg~~   65 (104)
T PF14464_consen    2 EEVLEQIIAHARAAYPNEACGLLLGRR------DDQRFIVVPNVN-------PDPRDSFRR---ERFEARERGLEIVGIW   65 (104)
T ss_dssp             -HHHHHHHHHHHHHTTS-EEEEEEEEE------ECCEEEEEEEEE---------HHCHHHH---HH-HHHHHT-EEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCeEEEEEEEEe------cCCEEEEEeCCC-------CCcHHHHHH---HhhhhhcccceeeEEE
Confidence            468899999999988899999999986      245677788777       223322222   22 5678999999999


Q ss_pred             EeCCCCCCCCCC
Q psy10969         87 LANENIKDVSYD   98 (204)
Q Consensus        87 ~Ane~~~d~~~~   98 (204)
                      |....... .||
T Consensus        66 HSHP~~~a-~pS   76 (104)
T PF14464_consen   66 HSHPSGPA-FPS   76 (104)
T ss_dssp             EEESSSSS-S--
T ss_pred             EcCCCCCC-CCC
Confidence            99765553 566

>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme

Probab=96.47  E-value=0.07  Score=41.35  Aligned_cols=108  Identities=6%  Similarity=-0.068  Sum_probs=62.5

Q ss_pred             ecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhH--HHHHHHHHHHHhhhCCceEE
Q psy10969          6 FTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPM--IEIALTQISSYAQSNGLVIA   83 (204)
Q Consensus         6 is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPm--lEvAL~qvd~y~~~~~l~Iv   83 (204)
                      |+...+-.|+-||.+-.-..++|+|+|+.       +   .|++..|+==..-. .+.  +++       .....|+.|+
T Consensus         1 i~~~~~~~i~~ha~~~~P~E~CGlL~G~~-------~---~v~~~~~~~n~~~~-~~~~~f~~-------~~~~~g~~iv   62 (117)
T cd08072           1 ISRDLLDSILEAAKSSHPNEFAALLRGKD-------G---VITELLILPGTESG-EVSAVFPL-------LMLPLDMSIV   62 (117)
T ss_pred             CCHHHHHHHHHHHhhcCCceEEEEEEeec-------c---EEEEEEECCCCCCC-Ccceeech-------HHhcCCCeEE
Confidence            45678899999999655578889999965       1   45666654311110 111  111       1346899999


Q ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCC
Q psy10969         84 GYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDG  143 (204)
Q Consensus        84 GyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~  143 (204)
                      |.||....- ...|| +.-.+.     ...+++.-+.+     +...+.+.+..|..+++
T Consensus        63 gi~HSHP~~-~~~PS-~~D~~~-----~~~~~~~~lIv-----s~~~~~~~~~a~~~~g~  110 (117)
T cd08072          63 GSVHSHPSG-SPRPS-DADLSF-----FSKTGLVHIIV-----GYPYDEDDWRAYDSDGE  110 (117)
T ss_pred             EEEEcCCCC-CCCCC-HHHHHh-----hhcCCCEEEEE-----ECcCCCCCEEEEecCCC
Confidence            999987543 34577 433222     23355554443     11113356677766654

This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>KOG1556|consensus

Probab=95.92  E-value=0.15  Score=45.08  Aligned_cols=112  Identities=15%  Similarity=0.236  Sum_probs=69.3

Q ss_pred             eeecHHHHHHHHhhh---hcCCCCceeEEEeeeecCCCCCCCCceEEEe--ceecccC------cccchhHHHHHHHHHH
Q psy10969          4 ISFTDRAYCKMILHA---VKYPHCSINGVLLAVTVPTTKESPKKLTYVD--AIPLFHL------CLQVTPMIEIALTQIS   72 (204)
Q Consensus         4 v~is~~AY~K~iLHA---aKyP~~aVnGvLlg~~~~~~~~~~~~v~i~D--aVPLfH~------~l~LsPmlEvAL~qvd   72 (204)
                      |.+.+.-..-.+=|-   +|--...|-|||||..      .++.+-|+.  |||.=--      |.-=.-.+|--..+..
T Consensus        11 ViVhPLVLLS~VDhynR~~k~~~KRvvGvLLG~~------~~~~i~vtnSfAvpFeEDdk~~svWFlDh~Y~esM~~mfk   84 (309)
T KOG1556|consen   11 VIVHPLVLLSAVDHYNRVGKDTNKRVVGVLLGSW------NGDVIDVTNSFAVPFEEDDKDKSVWFLDHNYIESMFGMFK   84 (309)
T ss_pred             eeeehhHHHHHHHHHhhhccCcCceEEEEEEecC------CCCeEEeecceeccccccCCCCceEEeccHHHHHHHHHHH
Confidence            445555555555453   3444488999999975      344666665  4553211      1111223332222222


Q ss_pred             HHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcccccc
Q psy10969         73 SYAQSNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQT  129 (204)
Q Consensus        73 ~y~~~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~  129 (204)
                      .  -..+..||||||...++..+.+.      |-+-+.+++|+.+|+.||-+.-+.+
T Consensus        85 K--vNakekivGWYhTGPkl~~nDl~------In~l~k~y~pnpvLvIIdvkpk~~g  133 (309)
T KOG1556|consen   85 K--VNAKEKVVGWYHTGPKLRENDLD------INELLKRYVPNPVLVIIDVKPKELG  133 (309)
T ss_pred             H--hcchhheeeeeccCCccccchhh------HHHHHhhcCCCceEEEEecccccCC
Confidence            1  12458899999998888876665      7788889999999999998766543

>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]

Probab=94.19  E-value=0.23  Score=38.87  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             eeecHHHHHHHHhhhhcC-CCCceeEEEeeeecCCCCC-CCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCce
Q psy10969          4 ISFTDRAYCKMILHAVKY-PHCSINGVLLAVTVPTTKE-SPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLV   81 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKy-P~~aVnGvLlg~~~~~~~~-~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~   81 (204)
                      ..++....-+|+-||.+= | ..|+|+|.|+..    + .-..+..++.-|..+.  ...||..+    ....+...|+.
T Consensus         2 ~~i~~~~l~~il~~a~~~~p-~E~~g~l~~~~~----~~~~~~~~n~~~~~~~~~--~~~~~~~~----~~~~~~~~g~~   70 (134)
T COG1310           2 LVIPKEVLGAILEHARREHP-REVCGLLAGTRE----GERYFPLKNVSVEPVEYF--EIDPEYSL----FYLAAEDAGEV   70 (134)
T ss_pred             ceecHHHHHHHHHHHHhcCC-hheEEEEEeecc----cceeeccccccCCcceeE--eeCHHHHH----HHHHHhhCCCE
Confidence            357788888899998765 6 999999999862    1 0012334444454443  34566554    33345788999


Q ss_pred             EEEEEEeCCCCCCCCCC
Q psy10969         82 IAGYYLANENIKDVSYD   98 (204)
Q Consensus        82 IvGyY~Ane~~~d~~~~   98 (204)
                      +||.||...... ..||
T Consensus        71 vvg~yHSHP~~~-~~pS   86 (134)
T COG1310          71 VVGWYHSHPGGP-PYPS   86 (134)
T ss_pred             EEEEEcCCCCCC-CCcC
Confidence            999999876544 3455

>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic

Probab=92.39  E-value=1.3  Score=32.79  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=53.0

Q ss_pred             HHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEEEEEEeCC
Q psy10969         11 YCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIAGYYLANE   90 (204)
Q Consensus        11 Y~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~IvGyY~Ane   90 (204)
                      |-.|.-|+.+-....++|+|+|+.      ++   .+....|+.=.....+|.-       ...+...|..+||.||...
T Consensus         3 ~~~i~~~~~~~~p~E~~gll~~~~------~~---~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~v~i~HsHP   66 (101)
T cd08059           3 LKTILVHAKDAHPDEFCGFLSGSK------DN---VMDELIFLPFVSGSVSAVI-------DLAALEIGMKVVGLVHSHP   66 (101)
T ss_pred             HHHHHHHHHhcCChhhheeeecCC------CC---eEEEEEeCCCcCCccChHH-------HHHHhhCCCcEEEEEecCc
Confidence            456677777774467889999965      12   4455666664444556653       5667889999999999875


Q ss_pred             CCCCCCCCHHHHHHHHHH
Q psy10969         91 NIKDVSYDKPYQSRIADK  108 (204)
Q Consensus        91 ~~~d~~~~~~~a~kIadk  108 (204)
                      . .+..|| ..=.+.+.+
T Consensus        67 ~-g~~~PS-~~D~~~~~~   82 (101)
T cd08059          67 S-GSCRPS-EADLSLFTR   82 (101)
T ss_pred             C-CCCCCC-HHHHHHHHh
Confidence            4 345677 554444443

This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family

Probab=92.34  E-value=1.7  Score=34.72  Aligned_cols=89  Identities=12%  Similarity=-0.013  Sum_probs=56.3

Q ss_pred             CceeEEEeeeecCCCCCCCCceEEEeceecccCc----ccchhHHHHHHHHHHHHhh-hCC-ceEEEEEEeCCCCCCCCC
Q psy10969         24 CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLC----LQVTPMIEIALTQISSYAQ-SNG-LVIAGYYLANENIKDVSY   97 (204)
Q Consensus        24 ~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~----l~LsPmlEvAL~qvd~y~~-~~~-l~IvGyY~Ane~~~d~~~   97 (204)
                      ..-.|+|+|+..      ++.+.|+|+.+=-...    ...-+=-+-.-.+++.+.+ ++| +.-+|-+|....... .|
T Consensus        17 ~EtGGiLiG~~~------~~~~ii~~~t~P~p~d~~tr~~F~r~~~~~q~~i~~~~~~s~g~~~ylGeWHtHP~~~p-~P   89 (131)
T TIGR02256        17 TETGGVLIGERR------GAHAVITKISEPGSGDIRTRKRFSRDGEHHQSEVDEHFEVSGGVDTYLGEWHTHPEDQP-EP   89 (131)
T ss_pred             CccceEEEEEEc------CCcEEEEEEEcCCCCcccCceEEEeCcHHHHHHHHHHHHHhCCceEEEEecCcCCCCCC-CC
Confidence            478999999872      4478889888422221    1222222222345555544 444 889999998766554 68


Q ss_pred             CHHHHHHHHHHHHhhCCCcEEEEE
Q psy10969         98 DKPYQSRIADKIAEFFPAACLIVL  121 (204)
Q Consensus        98 ~~~~a~kIadkI~~~~~~a~ll~i  121 (204)
                      | ..-.+-..++.+... +.+++|
T Consensus        90 S-~~D~~~~~~~~~~~~-~~l~iI  111 (131)
T TIGR02256        90 S-WTDRRSWRTIIRSPE-AMLLLI  111 (131)
T ss_pred             C-HHHHHHHHHHHhCCC-eeEEEE
Confidence            8 888888888887643 343333

This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.

>KOG1555|consensus

Probab=92.23  E-value=0.52  Score=42.92  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             eeecHHHHHHHHhhh-hcCCCCceeEEE-eeeecCCCCCCCCceEEEe---ceecccCcccchhHHHHHH-HHHHHHhhh
Q psy10969          4 ISFTDRAYCKMILHA-VKYPHCSINGVL-LAVTVPTTKESPKKLTYVD---AIPLFHLCLQVTPMIEIAL-TQISSYAQS   77 (204)
Q Consensus         4 v~is~~AY~K~iLHA-aKyP~~aVnGvL-lg~~~~~~~~~~~~v~i~D---aVPLfH~~l~LsPmlEvAL-~qvd~y~~~   77 (204)
                      +.++..|-.||..|+ ++=|...|.|++ +|+...  =-..-++.++|   .-+-+=....+.|-+.-.. +|.....+.
T Consensus        33 v~i~slall~m~rh~r~~~p~e~v~Glm~lg~~~~--fv~~~Tv~vv~v~am~~sg~~is~~~e~~d~V~q~q~~~~l~~  110 (316)
T KOG1555|consen   33 VYISSLALLKMLRHDRAGSPEETVMGLMSLGRLPE--FVDDYTVRVVDVFAMPQSGTGISKFVEAVDPVFQTQMMDLLKQ  110 (316)
T ss_pred             eeeehhhhhhcccccccCCchhhccceeecccccc--eeeecceeeeeeeccccccceecccchhccHHHHHHHHHHHHh
Confidence            789999999999997 577777799999 993200  00112233333   2222211111123332222 455555566


Q ss_pred             CC--ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEe
Q psy10969         78 NG--LVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLD  122 (204)
Q Consensus        78 ~~--l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iD  122 (204)
                      .|  +.+|||||....+.- .|| .+-..--..-+..++.|+..+||
T Consensus       111 tGrp~~VVGWYHSHP~f~~-wpS-~vDi~tQ~syq~~~~r~~a~~v~  155 (316)
T KOG1555|consen  111 TGRPELVVGWYHSHPGFGC-WPS-LVDIDTQQSYQALSSRAVAVVVD  155 (316)
T ss_pred             cCCcceEEeeccCCCCCCC-Ccc-ccchhHHHHHhhhccCCcceeee
Confidence            66  559999999888773 233 22222222223335666665554

>KOG2975|consensus

Probab=91.57  E-value=1.9  Score=38.56  Aligned_cols=121  Identities=14%  Similarity=0.097  Sum_probs=80.5

Q ss_pred             ecHHHHHHHHhhhhcCCC--CceeEEEeeeecCCCCCCCCceEEEeceecccCcc--cchhHHHHHHHHHHHHhhh-CCc
Q psy10969          6 FTDRAYCKMILHAVKYPH--CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCL--QVTPMIEIALTQISSYAQS-NGL   80 (204)
Q Consensus         6 is~~AY~K~iLHAaKyP~--~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l--~LsPmlEvAL~qvd~y~~~-~~l   80 (204)
                      +.+.-|.-++=|--+.|.  ..|.|-|||+.      +++.|+|+.|.-.=|--.  .+.-=+|-|..+.+.+-+. .+-
T Consensus        25 ihP~Vlf~ivD~~~RR~~~~~rviGTLLG~~------~~g~ieitNCFaVPhnEssdqvevdm~y~~~M~~l~~k~npnE   98 (288)
T KOG2975|consen   25 LHPVVLFSIVDAYERRNKGAERVIGTLLGTV------DKGSVEVTNCFAVPHNESSDQVEVDMEYAKNMYELHKKVNPNE   98 (288)
T ss_pred             EcceEEeEeehhhhcCCccchhhhhheeecc------cCCeEEEEEeeeccCccccccceeeHHHHHHHHHHhcccCCCc
Confidence            334444444444445554  56999999987      345799999876666542  4555567788888887664 569


Q ss_pred             eEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         81 VIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        81 ~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      .|||||--.     .+++ ..+.-|-|--++.+++.+-+.||-.--   .++-++..|-..
T Consensus        99 ~vvGWyaTg-----~dvt-~~sslihdyYare~~~pvhLtVDT~~~---n~rm~ikaYvss  150 (288)
T KOG2975|consen   99 LVVGWYATG-----HDVT-EHSSLIHDYYAREAPNPVHLTVDTSLQ---NGRMSIKAYVSS  150 (288)
T ss_pred             eeEEEEecC-----CCcc-cchhHHHHHhhccCCCCeEEEEecccc---CCccceeEEEEe
Confidence            999999854     2355 556678888888899988888874211   233345555444

>KOG1560|consensus

Probab=89.47  E-value=2.9  Score=37.85  Aligned_cols=129  Identities=17%  Similarity=0.241  Sum_probs=79.7

Q ss_pred             eeecHHHHHHHHhhhhcC-CC-CceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHH--------------
Q psy10969          4 ISFTDRAYCKMILHAVKY-PH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIA--------------   67 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKy-P~-~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvA--------------   67 (204)
                      |++...--.||+-|+--- |. ..+-|+|+|=.      -++.++|+.|.|---.    .||=+=|              
T Consensus        15 v~ldsLvVMkiiKHc~ee~~n~d~~~GvL~Glv------vd~~LeITncFp~p~~----~~~edda~~~~~~de~rq~~~   84 (339)
T KOG1560|consen   15 VELDSLVVMKIIKHCREEFPNGDGTQGVLLGLV------VDGRLEITNCFPFPSV----LENEDDAVNKSVSDEARQAYQ   84 (339)
T ss_pred             eeehhHHHHHHHHHHHhhcCCcchhhheeeeee------ecceeEeecccCCCcc----CCCccchhhhhhhHHHHHHHH
Confidence            678888889999998654 33 68999999965      2458999999996532    1332222              


Q ss_pred             HHHHHHHhhh--CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec----
Q psy10969         68 LTQISSYAQS--NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS----  141 (204)
Q Consensus        68 L~qvd~y~~~--~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~----  141 (204)
                      |++.... +.  -..-+||||+...--  +.++ +.--.--=.-+...|+.++++.|-.|-+.  +.-.+..|...    
T Consensus        85 l~mlrrl-r~vnid~~hVGwYqs~~vg--s~lS-~~lveSqy~YQ~a~pesVvliYD~~kssq--G~L~lrAyrLTp~am  158 (339)
T KOG1560|consen   85 LAMLRRL-RYVNIDHLHVGWYQSAYVG--SFLS-PALVESQYAYQKAIPESVVLIYDPIKSSQ--GTLSLRAYRLTPEAM  158 (339)
T ss_pred             HHHHHHh-hhcCccceeeeeeeeehhc--cccC-HHHHHHHHHHHhcCCccEEEEeccccccC--ceEEeehhhcCHHHH
Confidence            1111111 11  345699999985322  2455 33222222334556788999999877763  34456666554    


Q ss_pred             ----CCceeec
Q psy10969        142 ----DGKWKPV  148 (204)
Q Consensus       142 ----~~~W~~~  148 (204)
                          ++.|++.
T Consensus       159 ~~~kekdwtpe  169 (339)
T KOG1560|consen  159 AAHKEKDWTPE  169 (339)
T ss_pred             HHHhcCCCCHH
Confidence                3678763

>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains

Probab=82.49  E-value=5.4  Score=30.38  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             HHHHHHhhh-hcCCCCceeEEEeeeecCCCCCCCCceEEEeceecc---c---CcccchhHHHHHHHHHHHHhhhCCceE
Q psy10969         10 AYCKMILHA-VKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLF---H---LCLQVTPMIEIALTQISSYAQSNGLVI   82 (204)
Q Consensus        10 AY~K~iLHA-aKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLf---H---~~l~LsPmlEvAL~qvd~y~~~~~l~I   82 (204)
                      .|-.|+-|| ..|| ...+|+|+|+.       +  +  +-.+|+=   .   ....+.|.-.++.       .+.| .|
T Consensus         2 i~~~i~~ha~~~~P-~E~CGll~g~~-------~--~--~~~~p~~N~~~~p~~~F~idp~e~~~a-------~~~~-~i   61 (108)
T cd08073           2 LEDAILAHAKAEYP-REACGLVVRKG-------R--K--LRYIPCRNIAADPEEHFEISPEDYAAA-------EDEG-EI   61 (108)
T ss_pred             HHHHHHHHHhHCCC-CcceEEEEecC-------C--c--eEEEECccCCCCccceEEeCHHHHHHH-------hcCC-CE
Confidence            356788899 6777 55669999954       1  1  2224442   1   1123455533332       1233 89


Q ss_pred             EEEEEeCCCCCCCCCC
Q psy10969         83 AGYYLANENIKDVSYD   98 (204)
Q Consensus        83 vGyY~Ane~~~d~~~~   98 (204)
                      +|.||..-. ....||
T Consensus        62 vgi~HSHP~-~~a~PS   76 (108)
T cd08073          62 VAVVHSHPD-GSPAPS   76 (108)
T ss_pred             EEEEEcCCC-CCCCCC
Confidence            999999754 334577

This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 55/235 (23%)

Query: 6   FTDRAY--CKMILHAVKYP--------HCSI------NGVLLAVTVPTTK-----ESPKK 44
              + Y  C ++L  V+           C I        V   ++  TT           
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 45  LTYVDAIPLFHLCLQVTP------MIEIALTQISSYAQSNGLVIAGYYLANENIKDVSYD 98
           LT  +   L    L   P      ++     ++S  A+S    I       +N K V+ D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES----IRDGLATWDNWKHVNCD 353

Query: 99  KPYQSRIADKIAEFFPAACLIVLDNRKLTQTM---QESALIVAQNSDGKWKPVSKNSIIV 155
           K   + I   +    PA      + RK+   +     SA I        W  V K+ ++V
Sbjct: 354 K-LTTIIESSLNVLEPA------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 156 DQTTLSSVSTLIQRN-----ISRHLVDFDN--HLDNLSADWTNSELNEIIEKEYQ 203
               L   S L+++      IS   +  +    L+N  A      L+  I   Y 
Sbjct: 407 VVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYA------LHRSIVDHYN 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	99.74
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	99.04
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	98.95
2znr_A	178	AMSH-like protease; metal binding protein, alterna	98.23
2kks_A	146	Uncharacterized protein; NESG, structural genomics	98.11
4b4t_U	338	RPN8, 26S proteasome regulatory subunit RPN8; hydr	98.04
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	97.91
2kcq_A	153	MOV34/MPN/PAD-1 family; NESG, structure, structura	97.73
1oi0_A	124	AF2198, hypothetical protein AF2198; proteasome, d	96.98

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A

Probab=99.74  E-value=9.9e-18  Score=137.73  Aligned_cols=124  Identities=12%  Similarity=0.154  Sum_probs=101.3

Q ss_pred             ceeecHHHHHHHHhhhhcCC----CCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh---HH--HHHHHHHHH
Q psy10969          3 EISFTDRAYCKMILHAVKYP----HCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP---MI--EIALTQISS   73 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP----~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP---ml--EvAL~qvd~   73 (204)
                      .|.|++.++.||+.|+.|+|    ...|+|+|||+.      .++.+.|+||+||.|......|   ++  |....+++.
T Consensus         9 ~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~------~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~   82 (187)
T 2o95_A            9 KVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSW------QKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGM   82 (187)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEE------SSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHH
T ss_pred             EEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEE------cCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHH
Confidence            48999999999999999983    689999999987      2458999999999998765554   44  888899999


Q ss_pred             HhhhC-CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         74 YAQSN-GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        74 y~~~~-~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                      +.+.+ ++.||||||++...++      .-..|++.+++.++++++|++|..+..   ...++..|...
T Consensus        83 ~~~v~~~~~iVGWY~s~~~~s~------~d~~i~~~~~~~~~~~v~Livd~~~~~---~~l~i~ay~~~  142 (187)
T 2o95_A           83 FKKVNARERIVGWYHTGPKLHK------NDIAINELMKRYCPNSVLVIIDVKPKD---LGLPTEAYISV  142 (187)
T ss_dssp             HHTTSSSCEEEEEEECCSSCCT------THHHHHHHHTTTCTTCEEEEECCCTTC----CCSEEEEEEE
T ss_pred             HHHhCCCCCEEEEEcCCCcCCc------ccHHHHHHHHhcCCCCEEEEECCCCCC---CCcCeEEEEEe
Confidence            88766 8999999999987743      223477888888999999999997753   23678888763

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}

Probab=99.04  E-value=2.1e-09  Score=85.20  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=82.9

Q ss_pred             ceeecHHHHHHHHhhhhcC-----CCCceeEEEeeeecCCCCCCCCceEEEeceecccCccc--chhHHHHHHHHHHHHh
Q psy10969          3 EISFTDRAYCKMILHAVKY-----PHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ--VTPMIEIALTQISSYA   75 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKy-----P~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~--LsPmlEvAL~qvd~y~   75 (204)
                      .|.|++.+..||+=|+.+-     ....|.|+|||..      .+.+++|+||.|+-|....  ...-.|-...+.+.+-
T Consensus         7 ~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~------~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k   80 (141)
T 4e0q_A            7 TISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQ------KGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYK   80 (141)
T ss_dssp             EEEECHHHHHHHHHHHHCC------CCEEEEEEEEEE------ETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHH
T ss_pred             EEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEE------eCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHH
Confidence            4889999999999999884     2357999999987      3568999999999997421  2333467777777776


Q ss_pred             hh-CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcc
Q psy10969         76 QS-NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK  125 (204)
Q Consensus        76 ~~-~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~k  125 (204)
                      +- .+..|||||+....     ++ +.-..|-+.+.+.++++++|++|-.+
T Consensus        81 ~v~~~e~iVGWY~s~~~-----~~-~~d~~i~~~~~~~~~~pV~L~~Dp~~  125 (141)
T 4e0q_A           81 QVFSDLDFIGWYTTGDN-----PT-ADDIKIQRQIAAINECPIMLQLNPLS  125 (141)
T ss_dssp             HHSTTCEEEEEEEEEC-------------CHHHHHHHTTCCCEEEEESCSC
T ss_pred             HhCCCccEEEEEeCCCC-----CC-cchHHHHHHHHHHCCCCEEEEECCCc
Confidence            54 56999999998753     34 44446788888889999999998755

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.95  E-value=6.6e-09  Score=91.75  Aligned_cols=127  Identities=12%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCccc-----chhHHHHHHHHHHHHhhh
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ-----VTPMIEIALTQISSYAQS   77 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~-----LsPmlEvAL~qvd~y~~~   77 (204)
                      .|.||+.|..||+.||..-....|.|+|||+..     ++..+.|+||.|+=|....     ..|..+.  .+.+ .+++
T Consensus        26 ~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~-----~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~--~m~~-~~~~   97 (306)
T 4b4t_V           26 TVYISSIALLKMLKHGRAGVPMEVMGLMLGEFV-----DDYTVNVVDVFAMPQSGTGVSVEAVDDVFQA--KMMD-MLKQ   97 (306)
T ss_dssp             EEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEE-----TTTEEEEEEEECCCCEESSSCEECCCHHHHH--HHHH-HHHH
T ss_pred             EEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEc-----CCeEEEEEEEEeCCcCCCCCchhcCCHHHHH--HHHH-HHHH
Confidence            489999999999999988777899999999752     4567999999999775432     3333222  1222 2333


Q ss_pred             --CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEec
Q psy10969         78 --NGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNS  141 (204)
Q Consensus        78 --~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~  141 (204)
                        .+..+|||||....+.. -|+ ..-...-..-+...+.++.|++|-.+-.  .+...+..|...
T Consensus        98 v~~~~~vVGWYhShP~~~~-~~S-~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~--~G~~~i~Afr~~  159 (306)
T 4b4t_V           98 TGRDQMVVGWYHSHPGFGC-WLS-SVDVNTQKSFEQLNSRAVAVVVDPIQSV--KGKVVIDAFRLI  159 (306)
T ss_dssp             HSCCCCCSEEEEECCSSSC-CCC-HHHHHHHHHHHHHCSSCEEEEECSSSSS--SCSSCEEEEECC
T ss_pred             hCCCcceeeEEecCCCCCC-cCC-HHHHHHHHHHHhcCCCcEEEEECCCcCC--CCceeeeEEEec
Confidence              45889999999877764 477 7776777777778899999999976543  345667777654

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A

Probab=98.23  E-value=9e-06  Score=66.44  Aligned_cols=112  Identities=11%  Similarity=0.036  Sum_probs=79.7

Q ss_pred             ceeecHHHHHHHHhhhhc-CCC-CceeEEEeeeecCCCCCCCCceEEEeceecccCcccch--hHHHHHHHHHHHHhhhC
Q psy10969          3 EISFTDRAYCKMILHAVK-YPH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVT--PMIEIALTQISSYAQSN   78 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaK-yP~-~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~Ls--PmlEvAL~qvd~y~~~~   78 (204)
                      .|.|+...+.||+-||-. +|. ..|+|+|+|+..      ++...|++++|+=-....-+  .+-+.  . +-.+....
T Consensus        10 ~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~------~~~~~V~~v~~~pq~~t~~~~~~~~~~--e-~~~~~~~~   80 (178)
T 2znr_A           10 CVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLT------HNEFTITHVIVPKQSAGPDYCDMENVE--E-LFNVQDQH   80 (178)
T ss_dssp             CEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEE------TTEEEEEEEEECCEEEETTEEEECCHH--H-HHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEec------CCCeEEEEEEeCCcCCCCCeeccCCHH--H-HHHHHHhC
Confidence            378999999999999986 564 788899999872      34678899987643221110  00011  1 11235678


Q ss_pred             CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCcc
Q psy10969         79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRK  125 (204)
Q Consensus        79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~k  125 (204)
                      |+.+||+||...... ..|| +.-...+-+.+...+.++.|+++-.+
T Consensus        81 ~l~~vGwyHSHP~~~-~~pS-~~Dv~tq~~yq~~~~~~v~iIvsp~~  125 (178)
T 2znr_A           81 DLLTLGWIHTHPTQT-AFLS-SVDLHTHCSYQLMLPEAIAIVCSPKH  125 (178)
T ss_dssp             TCEEEEEEEECSSSC-SCCC-HHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred             CCEEEEEEeCCCCCC-CCCC-HHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence            999999999975544 4688 88888888888888999998886644

>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}

Probab=98.11  E-value=0.0001  Score=57.72  Aligned_cols=125  Identities=16%  Similarity=0.150  Sum_probs=82.3

Q ss_pred             eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccC-----cccchhHHHHHHHHHHHHhhhC
Q psy10969          4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHL-----CLQVTPMIEIALTQISSYAQSN   78 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~-----~l~LsPmlEvAL~qvd~y~~~~   78 (204)
                      +.|+..++.+|+-||.+-.-..++|+|+|+..      ++...|++++|+=-.     .....|.   .+..+...+...
T Consensus         2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~------~~~~~v~~~~p~~n~~~~~~~f~~dp~---~~~~~~~~~~~~   72 (146)
T 2kks_A            2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRD------GDDRWVERVYPLNNLDQSPEHFSMDPR---EQLTAVKDMRKN   72 (146)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEE------TTEEEEEEEECCCCCSCCSSSCCCCHH---HHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHhcCCcceEEEEEEEEc------CCCcEEEEEEECCCcCCCCceEEECHH---HHHHHHHHHHHC
Confidence            78999999999999998333799999999862      345788999998421     1233443   233444466778


Q ss_pred             CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCccccccccCccEEEEEecCCceeec
Q psy10969         79 GLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNRKLTQTMQESALIVAQNSDGKWKPV  148 (204)
Q Consensus        79 ~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~kl~~~~~~~~l~~~~~~~~~W~~~  148 (204)
                      |+.+||+||...... ..|| ..-.+.+     ..++++.+.+.-..    .+.+.+..|...++++...
T Consensus        73 g~~ivG~~HSHP~~~-~~PS-~~D~~~~-----~~~~~~~lIvs~~~----~~~~~~~af~~~~~~~~e~  131 (146)
T 2kks_A           73 GWVMLGNFHSHPATP-ARPS-AEDKRLA-----FDPSLSYLIISLAE----PQKPVCKSFLIKKDGVDEE  131 (146)
T ss_dssp             TCEEEEEEEEESSSC-SSCC-HHHHTTC-----CSSSCEEEEEECSC----SSSCEEEEEEECSSCEEEE
T ss_pred             CCEEEEEEeCCCcCC-CCCC-HHHHHhh-----hcCCCeEEEEEccC----CCceEEEEEEEeCCeEEEE
Confidence            999999999986544 4677 4443322     23555544442211    1245678888877777653

>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=6.1e-05  Score=67.03  Aligned_cols=123  Identities=8%  Similarity=0.061  Sum_probs=82.3

Q ss_pred             ceeecHHHHHHHHhhhhc-C--CCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchh-----HHHHHHHHHHHH
Q psy10969          3 EISFTDRAYCKMILHAVK-Y--PHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTP-----MIEIALTQISSY   74 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaK-y--P~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsP-----mlEvAL~qvd~y   74 (204)
                      +|.|.+.+..+|+=|..+ .  -...|.|.|||..      .|..|+|++|.|+-|....-.+     =.+-.-.+.+.|
T Consensus         7 ~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~------~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~   80 (338)
T 4b4t_U            7 KVTIAPLVLLSALDHYERTQTKENKRCVGVILGDA------NSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMC   80 (338)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEE------CSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHH
T ss_pred             EEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEE------cCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHH
Confidence            489999999999999765 2  2357999999986      4678999999999886432111     012233344443


Q ss_pred             hh-hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCC-CcEEEEEeCccccccccCccEEEEEe
Q psy10969         75 AQ-SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFP-AACLIVLDNRKLTQTMQESALIVAQN  140 (204)
Q Consensus        75 ~~-~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~-~a~ll~iDn~kl~~~~~~~~l~~~~~  140 (204)
                      -+ -..+.|||||+...     .+. +....|-+-+.+.++ .++++++|-..-   .+.-++.+|..
T Consensus        81 kkV~~~e~iVGWY~tg~-----~~~-~~d~~Ih~~~~~~~~~~pi~l~~d~~~~---~~~lpi~aY~s  139 (338)
T 4b4t_U           81 KKINAKEKLIGWYHSGP-----KLR-ASDLKINELFKKYTQNNPLLLIVDVKQQ---GVGLPTDAYVA  139 (338)
T ss_dssp             HHHCCSCEEEEEEECCS-----SCC-STHHHHHHHHGGGCCSCCCEEEECSCCC---SSSCSEEEEEE
T ss_pred             hhcCccCCEEEEEecCC-----CCC-ccHHHHHHHHHhccCCCcEEEEecCCCC---CCCcceEEEEe
Confidence            33 26799999999753     344 555678888888774 667777765322   23345677754

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A

Probab=97.91  E-value=8.4e-05  Score=62.51  Aligned_cols=109  Identities=11%  Similarity=0.102  Sum_probs=78.9

Q ss_pred             ceeecHHHHHHHHhhhhcC-CC-CceeEEEeeeecCCCCCCCCceEEEeceecccCccc----chhHHHHHHHHHHHHhh
Q psy10969          3 EISFTDRAYCKMILHAVKY-PH-CSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQ----VTPMIEIALTQISSYAQ   76 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKy-P~-~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~----LsPmlEvAL~qvd~y~~   76 (204)
                      .|.|+...+.|++-||-.- |. ..|+|+|+|+.      .++..+|++++.+.-....    +....|    +. .|..
T Consensus        43 ~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~------~~~~~~I~~v~~ppq~gt~~~v~~~~~~e----~~-~~~~  111 (211)
T 3rzv_A           43 HVVVPGRLCPQFLQLASANTARGVATCGILCGKL------MRNEFTITHVLIPKQSAGSDYCNTENEEE----LF-LIQD  111 (211)
T ss_dssp             CEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEE------ETTEEEEEEEEECCEEECSSCEEECCHHH----HH-HHHH
T ss_pred             EEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEc------CCCCEEEEEEEeCCccCCCCceeccChHH----HH-HHHh
Confidence            3789999999999999884 53 68889999987      2356888999855432221    111111    11 2334


Q ss_pred             hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEEeCc
Q psy10969         77 SNGLVIAGYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVLDNR  124 (204)
Q Consensus        77 ~~~l~IvGyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~iDn~  124 (204)
                      ..|+.+||+||...... ..|| +.-.....+.+...+.++.|++|-.
T Consensus       112 ~~~l~~vGWyHSHP~~~-~~pS-~~Dl~tq~~~q~~~~~~I~IVvsP~  157 (211)
T 3rzv_A          112 QQGLITLGWIHTHPTQT-AFLS-SVDLHTHCSYQMMLPESVAIVCSPK  157 (211)
T ss_dssp             HHTCEEEEEEEECTTSC-SCCC-HHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred             hCCCEEEEEEeCCCCCC-CCCC-HHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            58999999999865433 5688 8888888889888999999999754

>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}

Probab=97.73  E-value=4e-05  Score=60.52  Aligned_cols=89  Identities=13%  Similarity=0.074  Sum_probs=63.8

Q ss_pred             eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccC-------cccchhHHHHHHHHHHHHhh
Q psy10969          4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHL-------CLQVTPMIEIALTQISSYAQ   76 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~-------~l~LsPmlEvAL~qvd~y~~   76 (204)
                      +.|+..++.+|+-||.+---..++|+|+|+..     .++.+.|++++|+-=.       ...+.|.   .+..+...++
T Consensus         1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~-----~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~---~~~~~~~~~~   72 (153)
T 2kcq_A            1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVT-----DDGDNRVAALHRATNRRSEQRTRRYELTAD---DYRAADAAAQ   72 (153)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEEC-----TTSCEEEEEEEESSCCCCCCCSCCSSCCCC---SHHHHHHHHH
T ss_pred             CEeCHHHHHHHHHHHHhcCCcceEEEEEEeec-----cCCCeEEEEEEECCCCCCCCCCcEEEECHH---HHHHHHHHHH
Confidence            36899999999999998433799999999861     1456889999999643       1223443   2334455567


Q ss_pred             hCCceEEEEEEeCCCCCCCCCCHHHH
Q psy10969         77 SNGLVIAGYYLANENIKDVSYDKPYQ  102 (204)
Q Consensus        77 ~~~l~IvGyY~Ane~~~d~~~~~~~a  102 (204)
                      +.|+.|||+||...... ..|| ..-
T Consensus        73 ~~g~~ivG~yHSHP~~~-~~PS-~~D   96 (153)
T 2kcq_A           73 EQGLDVVGVYHSHPDHP-ARPS-ATD   96 (153)
T ss_dssp             HHTCEEEEEEEECSSSS-SSCC-HHH
T ss_pred             HCCCeEEEEEeCCCCCC-CCCC-HHH
Confidence            78999999999987644 4677 543

>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A

Probab=96.98  E-value=0.0061  Score=46.17  Aligned_cols=94  Identities=10%  Similarity=-0.024  Sum_probs=59.5

Q ss_pred             eeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceEE
Q psy10969          4 ISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVIA   83 (204)
Q Consensus         4 v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~Iv   83 (204)
                      +.|+..++.+|+-||.+---..++|+|+|+.       +   .|++.+|+= .. .-.|-.+.-+     .....|+.||
T Consensus         4 v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~-------~---~v~~~~~~p-~~-~~~~~~~f~~-----~~~~~~~~iv   66 (124)
T 1oi0_A            4 MKISRGLLKTILEAAKSAHPDEFIALLSGSK-------D---VMDELIFLP-FV-SGSVSAVIHL-----DMLPIGMKVF   66 (124)
T ss_dssp             CEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------T---EECEEEECC-CC-C------------------CCCEEE
T ss_pred             EEEcHHHHHHHHHHHHhcCCCeeEEEEeccc-------C---EEEEEEECC-CC-CCCcCceeee-----eeccCCCEEE
Confidence            7899999999999997543469999999964       1   778998886 33 2223211111     2345889999


Q ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHhhCCCcEEEEE
Q psy10969         84 GYYLANENIKDVSYDKPYQSRIADKIAEFFPAACLIVL  121 (204)
Q Consensus        84 GyY~Ane~~~d~~~~~~~a~kIadkI~~~~~~a~ll~i  121 (204)
                      |.||...... ..|| ..-.+.+.     .+++..+.+
T Consensus        67 G~~HSHP~~~-~~PS-~~D~~~~~-----~~~~~~lIv   97 (124)
T 1oi0_A           67 GTVHSHPSPS-CRPS-EEDLSLFT-----RFGKYHIIV   97 (124)
T ss_dssp             EEEEEESSSC-CSCC-HHHHHHHH-----HSCSEEEEE
T ss_pred             EEEEECcCCC-CccC-HHHHHhhh-----cCCCEEEEE
Confidence            9999986543 4688 55444433     255555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1oi0a_	121	Hypothetical protein AF2198 {Archaeon Archaeoglobu	96.27

>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.27  E-value=0.01  Score=43.34  Aligned_cols=84  Identities=8%  Similarity=-0.038  Sum_probs=52.1

Q ss_pred             ceeecHHHHHHHHhhhhcCCCCceeEEEeeeecCCCCCCCCceEEEeceecccCcccchhHHHHHHHHHHHHhhhCCceE
Q psy10969          3 EISFTDRAYCKMILHAVKYPHCSINGVLLAVTVPTTKESPKKLTYVDAIPLFHLCLQVTPMIEIALTQISSYAQSNGLVI   82 (204)
Q Consensus         3 ~v~is~~AY~K~iLHAaKyP~~aVnGvLlg~~~~~~~~~~~~v~i~DaVPLfH~~l~LsPmlEvAL~qvd~y~~~~~l~I   82 (204)
                      .++|+...+-.|+-||.+-.-..++|+|+|+.       +   .+++.+|+=-..  -.|...     .+......|+.|
T Consensus         3 ~l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~-------~---~i~~~~~~~n~~--~~~~~~-----~~~~~~~~~~~i   65 (121)
T d1oi0a_           3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSK-------D---VMDELIFLPFVS--GSVSAV-----IHLDMLPIGMKV   65 (121)
T ss_dssp             SCEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------T---EECEEEECCCCC--------------------CCCEE
T ss_pred             eEEECHHHHHHHHHHHHhcCCceeEEEEEecC-------C---cEEEEEEcCCCC--CCcccc-----cccchhhcCCeE
Confidence            58999999999999998755579999999964       1   345555543222  222211     122335679999


Q ss_pred             EEEEEeCCCCCCCCCCHHHHHHH
Q psy10969         83 AGYYLANENIKDVSYDKPYQSRI  105 (204)
Q Consensus        83 vGyY~Ane~~~d~~~~~~~a~kI  105 (204)
                      +|.||....- +..|| ..-.+.
T Consensus        66 vgi~HSHP~~-~a~PS-~~D~~~   86 (121)
T d1oi0a_          66 FGTVHSHPSP-SCRPS-EEDLSL   86 (121)
T ss_dssp             EEEEEEESSS-CCSCC-HHHHHH
T ss_pred             EEEEEecCCC-CCCcC-HHHHHh
Confidence            9999997644 45688 544433