Psyllid ID: psy11009

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860---
MCIATGASMVGILGKSYNAAKRPQQSTEHSLAENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA
ccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHcccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccEEEEEcHHHHHccccccccHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHHHHccEEccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHcccHHHHcccccccccccccHHHHHHHHHHccccccHHHHHcHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEcHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccc
ccEEcccHHHHHccccHccccccccccHccHcccHHHEEHHHHHHHccEEEEEHHHHHHHHcccccEEEcccEEEEccEEEEEcccccccccEccccEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHcHcccccccHHHHHHHHHHHcccccccccEEEEEEccccHHHcHHHHHHHccEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHcccHcccccEcccccccccEEEEEEcccccccccccccHcHHHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHcccccHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEccHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEHHHHHccccccccccccHHHHHHHHHHHccccccccccccEEEEEEEcccccccc
mciatgasMVGILGksynaakrpqqstehslaenEEIELSIFSAMVDGFVYIFGNILTFLtskypsvfllpkairignltfifgsefqsepvvgsgtylkhkspikmNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSItnrgfyiedyevsppgptLAVAKMFSSLAVQKLLRGSKTFRTLCIHKyrlltfpstpvqysiqkgipwDIDEALRRRLEKriyiplpskaGREALLKINLkevkvdpavdlthiasqldgysgaditnvcRDASMMSMRRKIigltpeqirqipkeeldlpvsqRDFEEALARCNKSVARedlenitveriaphmstiGKKLYLKFqktpivtlatgpvglisrdnlkhkspikmNFLSLVLPLLaeehgnngisndwhKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARessltgnydsACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNfgshnvndermlgnsrpnqfdsifssdannslepwvtdpdvwppandtdpslyqlhtpkpqqtktfsktrkssipnkstpqsnnstlkrgnktpannkkepnlgyksvTYDKVlknssdnenvknktksnnaqgnsnptnnsnnnnsnnnpgnsnshddkpvmqerrfesygcdnDLVEMLERDmvqknpnirwddIAELTDAKRLLEEAVvlpmwmpeffkgirrpwkgvlmvgppgtgkTMLAKAVATECGTTFFNVCSStltskyrgeSEKLVRLLFEMARFYAPSTIFIDEIDSlcsrrgseseheaSRRVKSELLVQMDglssaedsSKVVMVLAATNFPWEGA
mciatgasmvGILGKSYNAAKRPQQSTEHSLAENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLAltvgsslnlYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKyrlltfpstpvqYSIQKGIPWDIDEALRRRLEKRiyiplpskagreALLKINLKEVKVDPAVDLTHiasqldgysgadITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNksvaredlenitveriaphmstiGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLyqlhtpkpqqtktfsktrkssipnkstpqsnnstlkrgnktpannkkepnlgyksvTYDKVLknssdnenvknktksnnaqgnsnptnnsnnnnsnnnpgnsnshDDKPVMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCsstltskyrgeSEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRgseseheasrrvkseLLVQMDGlssaedsskvVMVLAATNFPWEGA
MCIATGASMVGILGKSYNAAKRPQQSTEHSLAENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKsnnaqgnsnptnnsnnnnsnnnpgnsnsHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA
***********I************************IELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQI*******************ALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRL***I****************************************************************************************************************************************************************************YGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC**********************************VVMVLAATNF*****
*******SMVGILGK*********************IELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSS****************CIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG***************LPVSQRDFEEALARCNKSVA**DLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGL********KSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIV*********************************************************************************************************************************************************************************************************************VEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDS******************SELLVQMDGLSSAEDSSKVVMVLAATNFPW***
MCIATGASMVGILGKSYN**************ENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPK*****************************RGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC**************VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA
MCIATGASMVGIL*KSYNA**********SLAENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERM*********************EPWVTDPDVWPPANDTDPSLYQLH***************************************************************************************************************FESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR**********RRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE**
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MCIATGASMVGILGKSYNAAKRPQQSTEHSLAENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query863 2.2.26 [Sep-21-2011]
O61577 516 Katanin p60 ATPase-contai yes N/A 0.438 0.732 0.483 1e-104
Q5U3S1 488 Katanin p60 ATPase-contai yes N/A 0.405 0.717 0.483 1e-102
Q1HGK7 492 Katanin p60 ATPase-contai yes N/A 0.412 0.723 0.483 1e-99
Q4R407 491 Katanin p60 ATPase-contai N/A N/A 0.404 0.710 0.462 8e-96
Q5RII9 485 Katanin p60 ATPase-contai no N/A 0.406 0.723 0.469 2e-95
O75449 491 Katanin p60 ATPase-contai yes N/A 0.412 0.725 0.465 2e-95
Q0IIR9 492 Katanin p60 ATPase-contai yes N/A 0.413 0.725 0.470 3e-95
Q6E0V2 491 Katanin p60 ATPase-contai yes N/A 0.412 0.725 0.458 2e-94
Q9WV86 491 Katanin p60 ATPase-contai yes N/A 0.410 0.720 0.458 1e-93
Q9PUL2 486 Katanin p60 ATPase-contai N/A N/A 0.264 0.469 0.655 2e-87
>sp|O61577|KTNA1_STRPU Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1 Back     alignment and function desciption
 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/426 (48%), Positives = 264/426 (61%), Gaps = 48/426 (11%)

Query: 443 EIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRH-WDHINNQLTKE 501
           EI E+T + RE +L GNY+++ +YYQ VLQQI +++  +  +E Q++H W  I  +L++E
Sbjct: 5   EICENTKMGREYALLGNYETSLVYYQGVLQQIQKLLTSV--HEPQRKHQWQTIRQELSQE 62

Query: 502 YNEVQRLQSMIRNFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVT---DPDVWPP 558
           Y  V+ +   +  F S     E       PN   + FS   + +         DPDVWPP
Sbjct: 63  YEHVKNITKTLNGFKSEPAAPE-----PAPNHRAAPFSHHQHAAKPAAAEPARDPDVWPP 117

Query: 559 ANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANNKKEPNLG 618
               D      H P P     + +  +   P +S P       K  N+ P N        
Sbjct: 118 PTPVD------HRPSP----PYQRAARKDPPRRSEPS------KPANRAPGN-------- 153

Query: 619 YKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQ 678
                 D+  +  SD                 +  + +    S+ +    +  +      
Sbjct: 154 ------DRGGRGPSDRRGDARSGGGGRGGARGSDKDKNRGGKSDKDKKAPSGEEG----D 203

Query: 679 ERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI 738
           E++F+  G D DLVE LERD+VQ+NPN+ W DIA LT+AKRLLEEAVVLP+WMP++FKGI
Sbjct: 204 EKKFDPAGYDKDLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFKGI 263

Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMAR 798
           RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV S++LTSKY GESEKLVRLLFEMAR
Sbjct: 264 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMAR 323

Query: 799 FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL---SSAEDSSKVVMVLAA 855
           FYAPSTIFIDEIDS+CS+RG+ SEHEASRRVKSELL+QMDG+   S+ E+SSK+VMVLAA
Sbjct: 324 FYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAA 383

Query: 856 TNFPWE 861
           TNFPW+
Sbjct: 384 TNFPWD 389
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux.
Strongylocentrotus purpuratus (taxid: 7668)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3
>sp|Q5U3S1|KATL1_DANRE Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1 Back     alignment and function description
>sp|Q1HGK7|KTNA1_CHICK Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R407|KTNA1_MACFA Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1 Back     alignment and function description
>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1 Back     alignment and function description
>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1 Back     alignment and function description
>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1 Back     alignment and function description
>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1 Back     alignment and function description
>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit A1 (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query863
383847793506 PREDICTED: katanin p60 ATPase-containing 0.422 0.721 0.538 1e-112
350423142512 PREDICTED: katanin p60 ATPase-containing 0.431 0.726 0.518 1e-109
380025740506 PREDICTED: LOW QUALITY PROTEIN: katanin 0.420 0.717 0.533 1e-109
66529882506 PREDICTED: katanin p60 ATPase-containing 0.420 0.717 0.531 1e-109
340727251512 PREDICTED: katanin p60 ATPase-containing 0.428 0.722 0.518 1e-109
156543457525 PREDICTED: katanin p60 ATPase-containing 0.446 0.733 0.518 1e-108
242005728526 Katanin p60 ATPase-containing subunit, p 0.448 0.735 0.512 1e-108
322795747511 hypothetical protein SINV_08833 [Solenop 0.426 0.720 0.526 1e-108
357612799530 putative Katanin p60 ATPase-containing s 0.456 0.743 0.516 1e-108
189233764535 PREDICTED: similar to aaa atpase [Tribol 0.449 0.725 0.505 1e-107
>gi|383847793|ref|XP_003699537.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/427 (53%), Positives = 288/427 (67%), Gaps = 62/427 (14%)

Query: 443 EIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEY 502
           EI E+T +ARE +LTGNYD++ +YYQ V+QQI+R++  + D  + K  W  I +Q+ +E+
Sbjct: 7   EICENTKLAREMALTGNYDTSGVYYQGVVQQIHRLLTSIADATR-KAKWQLIQHQIVQEF 65

Query: 503 NEVQRLQSMIRNFGSHNVNDERMLGNS-----RPNQFDSIFS-SDANNSLEPWVT-DPDV 555
            +V+   + ++ F   + + ER+LGNS      P +  ++++ +++++S  P V+ DPDV
Sbjct: 66  EKVKATSNTLQLFKV-DTHGERLLGNSCLSFEEPTRDPTLWTYNNSDHSWNPTVSKDPDV 124

Query: 556 WPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANNKKEP 615
           WPP            TP  Q         KS  P KS  +  N T  R          +P
Sbjct: 125 WPPL-----------TPAEQ---------KSIRPLKSQTKQQNRTSTR----------KP 154

Query: 616 NLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKP 675
            +  K V    V++   D++    K  +N  +  S+  +                     
Sbjct: 155 VVTGKKVDIKPVVRK--DDKKASRKDDTNKEKCESDKVDIE------------------- 193

Query: 676 VMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFF 735
            ++ER+FE  G D DLV++LERD+VQKNPNI WDDIA+L +AKRLLEEAVVLPMWMP+FF
Sbjct: 194 -VEERKFEPSGSDRDLVDLLERDIVQKNPNIHWDDIADLYEAKRLLEEAVVLPMWMPDFF 252

Query: 736 KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFE 795
           KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV SSTLTSKYRGESEKLVRLLFE
Sbjct: 253 KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 312

Query: 796 MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS-AEDSSKVVMVLA 854
           MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG+SS +ED SKVVMVLA
Sbjct: 313 MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGISSNSEDPSKVVMVLA 372

Query: 855 ATNFPWE 861
           ATNFPW+
Sbjct: 373 ATNFPWD 379

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350423142|ref|XP_003493398.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like isoform 1 [Bombus impatiens] gi|350423149|ref|XP_003493399.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380025740|ref|XP_003696626.1| PREDICTED: LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A-like 1-like [Apis florea] Back     alignment and taxonomy information
>gi|66529882|ref|XP_397402.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340727251|ref|XP_003401961.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like isoform 1 [Bombus terrestris] gi|340727253|ref|XP_003401962.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|156543457|ref|XP_001601295.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242005728|ref|XP_002423714.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus corporis] gi|212506899|gb|EEB10976.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322795747|gb|EFZ18426.1| hypothetical protein SINV_08833 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|357612799|gb|EHJ68174.1| putative Katanin p60 ATPase-containing subunit [Danaus plexippus] Back     alignment and taxonomy information
>gi|189233764|ref|XP_001814283.1| PREDICTED: similar to aaa atpase [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query863
UNIPROTKB|O61577 516 KATNA1 "Katanin p60 ATPase-con 0.212 0.354 0.806 1.6e-98
ZFIN|ZDB-GENE-041114-141 488 katnal1 "katanin p60 subunit A 0.214 0.379 0.803 3.8e-98
UNIPROTKB|E2QSK3 492 KATNAL1 "Uncharacterized prote 0.221 0.388 0.778 2.6e-95
RGD|1359252 488 Katnal1 "katanin p60 subunit A 0.209 0.370 0.809 4.3e-95
MGI|MGI:2387638 488 Katnal1 "katanin p60 subunit A 0.209 0.370 0.809 4.3e-95
UNIPROTKB|F6V168 490 KATNAL1 "Uncharacterized prote 0.221 0.389 0.778 8.9e-95
UNIPROTKB|Q9BW62 490 KATNAL1 "Katanin p60 ATPase-co 0.209 0.369 0.809 3.8e-94
UNIPROTKB|F1RST8 490 KATNAL1 "Uncharacterized prote 0.209 0.369 0.804 1e-93
UNIPROTKB|F1MAX6 499 KATNAL1 "Uncharacterized prote 0.209 0.362 0.798 1e-93
UNIPROTKB|E1BHF2 490 KATNAL1 "Uncharacterized prote 0.209 0.369 0.798 1.3e-93
UNIPROTKB|O61577 KATNA1 "Katanin p60 ATPase-containing subunit A1" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
 Score = 790 (283.2 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
 Identities = 150/186 (80%), Positives = 171/186 (91%)

Query:   679 ERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI 738
             E++F+  G D DLVE LERD+VQ+NPN+ W DIA LT+AKRLLEEAVVLP+WMP++FKGI
Sbjct:   204 EKKFDPAGYDKDLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFKGI 263

Query:   739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMAR 798
             RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV S++LTSKY GESEKLVRLLFEMAR
Sbjct:   264 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMAR 323

Query:   799 FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS---SAEDSSKVVMVLAA 855
             FYAPSTIFIDEIDS+CS+RG+ SEHEASRRVKSELL+QMDG+S   + E+SSK+VMVLAA
Sbjct:   324 FYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAA 383

Query:   856 TNFPWE 861
             TNFPW+
Sbjct:   384 TNFPWD 389
GO:0000922 "spindle pole" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0005819 "spindle" evidence=ISS
GO:0030496 "midbody" evidence=ISS
ZFIN|ZDB-GENE-041114-141 katnal1 "katanin p60 subunit A-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSK3 KATNAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359252 Katnal1 "katanin p60 subunit A-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2387638 Katnal1 "katanin p60 subunit A-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6V168 KATNAL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BW62 KATNAL1 "Katanin p60 ATPase-containing subunit A-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RST8 KATNAL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAX6 KATNAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BHF2 KATNAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P52917VPS4_YEASTNo assigned EC number0.50230.23400.4622yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
COG0464 494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 2e-49
COG1222 406 COG1222, RPT1, ATP-dependent 26S proteasome regula 2e-44
pfam00004131 pfam00004, AAA, ATPase family associated with vari 6e-43
PRK03992 389 PRK03992, PRK03992, proteasome-activating nucleoti 2e-41
TIGR01243 733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 4e-39
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 3e-37
TIGR01243 733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 2e-35
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 1e-33
PTZ00361 438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 1e-33
TIGR01241 495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 5e-30
TIGR03689 512 TIGR03689, pup_AAA, proteasome ATPase 6e-27
CHL00176 638 CHL00176, ftsH, cell division protein; Validated 2e-24
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 2e-22
COG0465 596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 3e-22
PRK10733 644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 1e-21
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 9e-21
COG0464494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 7e-20
TIGR01243733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 2e-18
COG0464 494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 5e-18
TIGR01243733 TIGR01243, CDC48, AAA family ATPase, CDC48 subfami 4e-15
PRK03992389 PRK03992, PRK03992, proteasome-activating nucleoti 8e-15
COG1222406 COG1222, RPT1, ATP-dependent 26S proteasome regula 6e-13
smart00382148 smart00382, AAA, ATPases associated with a variety 6e-13
TIGR01241495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 2e-12
COG0464494 COG0464, SpoVK, ATPases of the AAA+ class [Posttra 6e-11
COG0465596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 1e-10
TIGR01242364 TIGR01242, 26Sp45, 26S proteasome subunit P45 fami 1e-09
CHL00176638 CHL00176, ftsH, cell division protein; Validated 1e-08
PRK10733644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 1e-07
CHL00195 489 CHL00195, ycf46, Ycf46; Provisional 2e-07
PTZ00454398 PTZ00454, PTZ00454, 26S protease regulatory subuni 6e-06
COG0714 329 COG0714, COG0714, MoxR-like ATPases [General funct 1e-05
PRK13342 413 PRK13342, PRK13342, recombination factor protein R 6e-05
COG1224 450 COG1224, TIP49, DNA helicase TIP49, TBP-interactin 7e-05
pfam01078207 pfam01078, Mg_chelatase, Magnesium chelatase, subu 1e-04
TIGR03922 557 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas 3e-04
pfam07724168 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) 5e-04
PTZ00361438 PTZ00361, PTZ00361, 26 proteosome regulatory subun 0.001
PRK13765 637 PRK13765, PRK13765, ATP-dependent protease Lon; Pr 0.001
cd01120165 cd01120, RecA-like_NTPases, RecA-like NTPases 0.001
pfam06068 395 pfam06068, TIP49, TIP49 C-terminus 0.001
COG1223368 COG1223, COG1223, Predicted ATPase (AAA+ superfami 0.003
PRK04195 482 PRK04195, PRK04195, replication factor C large sub 0.003
COG2256 436 COG2256, MGS1, ATPase related to the helicase subu 0.004
TIGR00382 413 TIGR00382, clpX, endopeptidase Clp ATP-binding reg 0.004
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  181 bits (462), Expect = 2e-49
 Identities = 88/180 (48%), Positives = 116/180 (64%), Gaps = 11/180 (6%)

Query: 689 NDLVEMLE-----RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPW 742
           +D  E L+     R ++ ++ ++  DDI  L +AK  L+EA+  P+  PE F+ +  RP 
Sbjct: 217 DDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPP 276

Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAP 802
           KGVL+ GPPGTGKT+LAKAVA E  + F +V  S L SK+ GESEK +R LFE AR  AP
Sbjct: 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAP 336

Query: 803 STIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862
           S IFIDEIDSL S RG  SE  + RRV  +LL ++DG+  AE     V+V+AATN P + 
Sbjct: 337 SIIFIDEIDSLASGRGP-SEDGSGRRVVGQLLTELDGIEKAEG----VLVIAATNRPDDL 391

Length = 494
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional Back     alignment and domain information
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed Back     alignment and domain information
>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI Back     alignment and domain information
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA Back     alignment and domain information
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) Back     alignment and domain information
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237495 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional Back     alignment and domain information
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases Back     alignment and domain information
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus Back     alignment and domain information
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 863
KOG0733|consensus 802 100.0
KOG0738|consensus 491 100.0
KOG0730|consensus 693 100.0
KOG0734|consensus752 100.0
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 100.0
KOG0733|consensus802 100.0
KOG0731|consensus774 100.0
KOG0730|consensus693 100.0
KOG0736|consensus953 100.0
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 100.0
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 100.0
CHL00176638 ftsH cell division protein; Validated 100.0
KOG0735|consensus952 100.0
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 100.0
KOG0738|consensus491 100.0
KOG0736|consensus 953 100.0
COG0464 494 SpoVK ATPases of the AAA+ class [Posttranslational 100.0
KOG0741|consensus744 100.0
KOG0739|consensus439 100.0
CHL002062281 ycf2 Ycf2; Provisional 100.0
KOG0737|consensus386 100.0
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 100.0
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 100.0
KOG0728|consensus404 100.0
KOG0735|consensus 952 100.0
KOG0652|consensus424 100.0
KOG0739|consensus 439 100.0
KOG0726|consensus440 100.0
CHL00195489 ycf46 Ycf46; Provisional 100.0
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 100.0
COG1222 406 RPT1 ATP-dependent 26S proteasome regulatory subun 100.0
KOG0729|consensus435 100.0
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 100.0
PRK03992389 proteasome-activating nucleotidase; Provisional 100.0
KOG0727|consensus408 99.97
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 99.97
KOG0740|consensus428 99.97
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 99.97
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.96
KOG0651|consensus388 99.96
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 99.96
KOG0734|consensus 752 99.95
KOG0727|consensus408 99.95
KOG0732|consensus1080 99.95
KOG0737|consensus 386 99.94
KOG0726|consensus 440 99.94
KOG0740|consensus 428 99.94
KOG0728|consensus 404 99.94
KOG0729|consensus 435 99.94
KOG0652|consensus424 99.93
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 99.92
KOG0731|consensus 774 99.92
TIGR03689 512 pup_AAA proteasome ATPase. In the Actinobacteria, 99.91
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 99.91
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.9
KOG0651|consensus 388 99.89
COG0465 596 HflB ATP-dependent Zn proteases [Posttranslational 99.89
PRK03992 389 proteasome-activating nucleotidase; Provisional 99.89
PRK10865857 protein disaggregation chaperone; Provisional 99.88
PLN00020 413 ribulose bisphosphate carboxylase/oxygenase activa 99.88
PTZ00361 438 26 proteosome regulatory subunit 4-like protein; P 99.88
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.88
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.87
CHL00195 489 ycf46 Ycf46; Provisional 99.87
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.87
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.86
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 99.85
CHL00095821 clpC Clp protease ATP binding subunit 99.84
KOG0732|consensus 1080 99.83
CHL00176 638 ftsH cell division protein; Validated 99.83
KOG0741|consensus 744 99.78
CHL00206 2281 ycf2 Ycf2; Provisional 99.77
PRK10733 644 hflB ATP-dependent metalloprotease; Reviewed 99.76
PF00004132 AAA: ATPase family associated with various cellula 99.73
KOG0742|consensus630 99.72
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 99.7
PF00004132 AAA: ATPase family associated with various cellula 99.69
KOG0744|consensus423 99.67
KOG0744|consensus 423 99.61
CHL00181287 cbbX CbbX; Provisional 99.61
KOG0743|consensus 457 99.58
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.58
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.58
CHL00181 287 cbbX CbbX; Provisional 99.56
TIGR02880 284 cbbX_cfxQ probable Rubsico expression protein CbbX 99.54
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 99.54
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 99.53
KOG0742|consensus 630 99.53
PF01434213 Peptidase_M41: Peptidase family M41 This is family 99.48
COG2256 436 MGS1 ATPase related to the helicase subunit of the 99.41
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.38
PRK05342 412 clpX ATP-dependent protease ATP-binding subunit Cl 99.37
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 99.35
PRK04195 482 replication factor C large subunit; Provisional 99.35
TIGR00763775 lon ATP-dependent protease La. This protein is ind 99.34
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 99.33
KOG0743|consensus457 99.33
TIGR00390 441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.33
KOG0989|consensus 346 99.33
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 99.32
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 99.31
CHL00095 821 clpC Clp protease ATP binding subunit 99.3
PLN03025 319 replication factor C subunit; Provisional 99.29
KOG2028|consensus 554 99.29
TIGR00382 413 clpX endopeptidase Clp ATP-binding regulatory subu 99.29
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 99.28
PRK10865 857 protein disaggregation chaperone; Provisional 99.28
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 99.27
PRK00080 328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.27
PHA02544 316 44 clamp loader, small subunit; Provisional 99.27
KOG2004|consensus 906 99.26
PRK05201 443 hslU ATP-dependent protease ATP-binding subunit Hs 99.25
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 99.25
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 99.24
COG2255 332 RuvB Holliday junction resolvasome, helicase subun 99.24
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 99.22
TIGR00635 305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.22
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 99.21
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.21
COG0466 782 Lon ATP-dependent Lon protease, bacterial type [Po 99.21
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 99.2
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 99.2
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.19
PRK13342 413 recombination factor protein RarA; Reviewed 99.19
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 99.18
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 99.17
PRK14961 363 DNA polymerase III subunits gamma and tau; Provisi 99.17
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 99.17
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.17
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 99.17
PRK12402 337 replication factor C small subunit 2; Reviewed 99.17
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 99.16
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 99.16
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 99.15
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 99.14
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 99.14
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 99.14
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.13
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.13
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 99.12
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 99.09
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 99.09
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 99.09
PRK06305 451 DNA polymerase III subunits gamma and tau; Validat 99.06
PRK14970 367 DNA polymerase III subunits gamma and tau; Provisi 99.06
KOG0991|consensus 333 99.06
TIGR02397 355 dnaX_nterm DNA polymerase III, subunit gamma and t 99.05
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 99.03
PRK07940 394 DNA polymerase III subunit delta'; Validated 99.03
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.03
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 99.03
PRK00440 319 rfc replication factor C small subunit; Reviewed 99.02
PRK14955 397 DNA polymerase III subunits gamma and tau; Provisi 99.02
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 99.01
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 99.0
COG1219 408 ClpX ATP-dependent protease Clp, ATPase subunit [P 99.0
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 98.99
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 98.99
PRK13341 725 recombination factor protein RarA/unknown domain f 98.97
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 98.96
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 98.95
TIGR00362405 DnaA chromosomal replication initiator protein Dna 98.94
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 98.94
PRK00149450 dnaA chromosomal replication initiation protein; R 98.93
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 98.92
KOG1969|consensus 877 98.92
PRK06893229 DNA replication initiation factor; Validated 98.92
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 98.9
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 98.9
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 98.89
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 98.87
COG2812 515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 98.86
PTZ001121164 origin recognition complex 1 protein; Provisional 98.84
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 98.84
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 98.84
PRK00149 450 dnaA chromosomal replication initiation protein; R 98.83
smart00382148 AAA ATPases associated with a variety of cellular 98.81
PRK13342413 recombination factor protein RarA; Reviewed 98.81
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 98.81
TIGR00362 405 DnaA chromosomal replication initiator protein Dna 98.79
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 98.79
KOG0745|consensus 564 98.78
COG0470 325 HolB ATPase involved in DNA replication [DNA repli 98.77
KOG1051|consensus 898 98.77
PRK06893229 DNA replication initiation factor; Validated 98.77
PRK14088 440 dnaA chromosomal replication initiation protein; P 98.77
PRK12377248 putative replication protein; Provisional 98.75
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 98.74
PRK12422445 chromosomal replication initiation protein; Provis 98.73
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 98.73
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 98.71
PRK08084235 DNA replication initiation factor; Provisional 98.71
COG3829 560 RocR Transcriptional regulator containing PAS, AAA 98.71
PRK14086617 dnaA chromosomal replication initiation protein; P 98.7
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 98.68
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 98.68
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 98.68
PRK08903227 DnaA regulatory inactivator Hda; Validated 98.68
PRK14088440 dnaA chromosomal replication initiation protein; P 98.67
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 98.67
PRK07940394 DNA polymerase III subunit delta'; Validated 98.67
PRK07952244 DNA replication protein DnaC; Validated 98.67
TIGR02928 365 orc1/cdc6 family replication initiation protein. M 98.67
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 98.67
TIGR00602 637 rad24 checkpoint protein rad24. This family is bas 98.66
PRK12402337 replication factor C small subunit 2; Reviewed 98.65
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 98.64
PRK14086 617 dnaA chromosomal replication initiation protein; P 98.64
PRK08084235 DNA replication initiation factor; Provisional 98.64
PRK04195482 replication factor C large subunit; Provisional 98.64
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 98.64
PRK08116268 hypothetical protein; Validated 98.63
PRK00411 394 cdc6 cell division control protein 6; Reviewed 98.63
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 98.63
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 98.62
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 98.61
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 98.61
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 98.61
TIGR01650 327 PD_CobS cobaltochelatase, CobS subunit. This model 98.61
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 98.58
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 98.58
PRK05642234 DNA replication initiation factor; Validated 98.58
PRK07471 365 DNA polymerase III subunit delta'; Validated 98.57
PHA02244 383 ATPase-like protein 98.56
PRK05564 313 DNA polymerase III subunit delta'; Validated 98.56
PRK08181269 transposase; Validated 98.56
PRK12422 445 chromosomal replication initiation protein; Provis 98.55
PRK08727233 hypothetical protein; Validated 98.53
COG2204 464 AtoC Response regulator containing CheY-like recei 98.53
PRK13407334 bchI magnesium chelatase subunit I; Provisional 98.53
PRK15424 538 propionate catabolism operon regulatory protein Pr 98.53
COG3604 550 FhlA Transcriptional regulator containing GAF, AAA 98.51
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 98.51
PRK13407 334 bchI magnesium chelatase subunit I; Provisional 98.51
COG0714329 MoxR-like ATPases [General function prediction onl 98.5
COG0714 329 MoxR-like ATPases [General function prediction onl 98.5
COG1221 403 PspF Transcriptional regulators containing an AAA- 98.49
PRK08903227 DnaA regulatory inactivator Hda; Validated 98.49
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 98.49
PRK14087450 dnaA chromosomal replication initiation protein; P 98.49
PRK06526254 transposase; Provisional 98.49
TIGR02974 329 phageshock_pspF psp operon transcriptional activat 98.48
PRK11331 459 5-methylcytosine-specific restriction enzyme subun 98.48
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 98.48
PRK14087 450 dnaA chromosomal replication initiation protein; P 98.47
PTZ00112 1164 origin recognition complex 1 protein; Provisional 98.46
PHA02544316 44 clamp loader, small subunit; Provisional 98.46
PRK06835329 DNA replication protein DnaC; Validated 98.46
TIGR02329 526 propionate_PrpR propionate catabolism operon regul 98.45
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 98.45
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 98.45
PRK08727233 hypothetical protein; Validated 98.45
PRK05022 509 anaerobic nitric oxide reductase transcription reg 98.44
COG1484254 DnaC DNA replication protein [DNA replication, rec 98.44
PRK13341725 recombination factor protein RarA/unknown domain f 98.44
PRK09112 351 DNA polymerase III subunit delta'; Validated 98.44
PRK05642234 DNA replication initiation factor; Validated 98.44
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.43
CHL00081 350 chlI Mg-protoporyphyrin IX chelatase 98.43
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 98.42
PRK08939306 primosomal protein DnaI; Reviewed 98.42
PRK13531 498 regulatory ATPase RavA; Provisional 98.41
PRK06620214 hypothetical protein; Validated 98.41
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 98.41
PRK00440319 rfc replication factor C small subunit; Reviewed 98.4
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 98.4
PRK10820 520 DNA-binding transcriptional regulator TyrR; Provis 98.39
PRK11331459 5-methylcytosine-specific restriction enzyme subun 98.39
PRK11608 326 pspF phage shock protein operon transcriptional ac 98.39
PRK09183259 transposase/IS protein; Provisional 98.38
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 98.37
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 98.37
PF03215 519 Rad17: Rad17 cell cycle checkpoint protein 98.37
PRK06620214 hypothetical protein; Validated 98.37
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 98.37
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 98.36
PLN03025319 replication factor C subunit; Provisional 98.36
PF07726131 AAA_3: ATPase family associated with various cellu 98.35
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 98.35
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 98.35
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 98.34
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 98.34
PRK08058 329 DNA polymerase III subunit delta'; Validated 98.33
PHA02244383 ATPase-like protein 98.33
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 98.32
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 98.32
PRK07399 314 DNA polymerase III subunit delta'; Validated 98.31
PRK11388 638 DNA-binding transcriptional regulator DhaR; Provis 98.3
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.3
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 98.29
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 98.29
PRK06921266 hypothetical protein; Provisional 98.29
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 98.28
KOG0990|consensus 360 98.28
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 98.28
smart00382148 AAA ATPases associated with a variety of cellular 98.28
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 98.28
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 98.27
smart00350509 MCM minichromosome maintenance proteins. 98.27
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 98.26
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.26
KOG2028|consensus554 98.25
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 98.25
COG2256436 MGS1 ATPase related to the helicase subunit of the 98.24
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 98.24
PRK05707 328 DNA polymerase III subunit delta'; Validated 98.23
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 98.22
TIGR02030 337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.19
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 98.19
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 98.19
COG1220 444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 98.18
PF06068 398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 98.18
TIGR00368 499 Mg chelatase-related protein. The N-terminal end m 98.18
KOG1514|consensus767 98.16
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 98.16
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 98.16
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 98.16
KOG2004|consensus906 98.15
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 98.14
COG0593 408 DnaA ATPase involved in DNA replication initiation 98.14
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 98.14
PRK09087226 hypothetical protein; Validated 98.13
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.13
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 98.12
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 98.12
COG1224 450 TIP49 DNA helicase TIP49, TBP-interacting protein 98.11
COG1474 366 CDC6 Cdc6-related protein, AAA superfamily ATPase 98.11
KOG1970|consensus 634 98.1
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 98.1
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 98.1
smart00763 361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 98.09
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 98.09
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.09
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 98.07
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 98.06
PRK09087226 hypothetical protein; Validated 98.02
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 98.01
COG2255332 RuvB Holliday junction resolvasome, helicase subun 97.97
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 97.96
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 97.96
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 97.94
COG0606 490 Predicted ATPase with chaperone activity [Posttran 97.94
PF13173128 AAA_14: AAA domain 97.93
PRK06871 325 DNA polymerase III subunit delta'; Validated 97.93
PRK13531498 regulatory ATPase RavA; Provisional 97.92
TIGR02915 445 PEP_resp_reg putative PEP-CTERM system response re 97.88
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 97.88
PRK11361 457 acetoacetate metabolism regulatory protein AtoC; P 97.88
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 97.87
PRK10923 469 glnG nitrogen regulation protein NR(I); Provisiona 97.87
COG3283 511 TyrR Transcriptional regulator of aromatic amino a 97.86
PRK07993 334 DNA polymerase III subunit delta'; Validated 97.85
PRK06964 342 DNA polymerase III subunit delta'; Validated 97.84
PRK04132 846 replication factor C small subunit; Provisional 97.84
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 97.79
PRK09862506 putative ATP-dependent protease; Provisional 97.74
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 97.74
PRK08769 319 DNA polymerase III subunit delta'; Validated 97.73
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.7
PRK15115 444 response regulator GlrR; Provisional 97.7
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 97.69
PRK09862 506 putative ATP-dependent protease; Provisional 97.69
PRK08699 325 DNA polymerase III subunit delta'; Validated 97.68
PRK06090 319 DNA polymerase III subunit delta'; Validated 97.67
PF03969 362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 97.67
smart00350 509 MCM minichromosome maintenance proteins. 97.67
TIGR02237209 recomb_radB DNA repair and recombination protein R 97.66
PRK04132846 replication factor C small subunit; Provisional 97.63
KOG0989|consensus346 97.63
cd01124187 KaiC KaiC is a circadian clock protein primarily f 97.61
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 97.6
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 97.59
PRK09112351 DNA polymerase III subunit delta'; Validated 97.59
KOG2227|consensus529 97.56
PF07726131 AAA_3: ATPase family associated with various cellu 97.53
PTZ00111 915 DNA replication licensing factor MCM4; Provisional 97.51
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 97.5
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 97.48
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 97.43
TIGR01818 463 ntrC nitrogen regulation protein NR(I). This model 97.43
PRK14722 374 flhF flagellar biosynthesis regulator FlhF; Provis 97.42
KOG1942|consensus 456 97.41
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 97.41
PRK14974336 cell division protein FtsY; Provisional 97.4
PHA00729226 NTP-binding motif containing protein 97.38
PRK08116268 hypothetical protein; Validated 97.37
PTZ00111915 DNA replication licensing factor MCM4; Provisional 97.37
KOG0745|consensus564 97.37
KOG1514|consensus 767 97.36
PRK07471365 DNA polymerase III subunit delta'; Validated 97.36
PRK09361225 radB DNA repair and recombination protein RadB; Pr 97.35
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 97.34
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 97.34
PRK05917 290 DNA polymerase III subunit delta'; Validated 97.33
PRK05707328 DNA polymerase III subunit delta'; Validated 97.32
COG1239 423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 97.31
PRK15455 644 PrkA family serine protein kinase; Provisional 97.3
TIGR02012 321 tigrfam_recA protein RecA. This model describes or 97.3
PRK10365 441 transcriptional regulatory protein ZraR; Provision 97.3
KOG2035|consensus 351 97.29
PRK08118167 topology modulation protein; Reviewed 97.25
COG0593408 DnaA ATPase involved in DNA replication initiation 97.24
PRK11823 446 DNA repair protein RadA; Provisional 97.24
cd01121 372 Sms Sms (bacterial radA) DNA repair protein. This 97.24
PRK00131175 aroK shikimate kinase; Reviewed 97.2
PRK00771 437 signal recognition particle protein Srp54; Provisi 97.2
PRK08533230 flagellar accessory protein FlaH; Reviewed 97.18
PF05729166 NACHT: NACHT domain 97.17
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 97.17
PRK06964342 DNA polymerase III subunit delta'; Validated 97.14
PRK07261171 topology modulation protein; Provisional 97.14
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 97.12
cd00983 325 recA RecA is a bacterial enzyme which has roles in 97.12
TIGR03015 269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 97.11
KOG2170|consensus 344 97.1
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 97.08
cd01394218 radB RadB. The archaeal protein radB shares simila 97.04
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.04
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 97.03
TIGR00064272 ftsY signal recognition particle-docking protein F 96.99
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 96.99
PRK13947171 shikimate kinase; Provisional 96.96
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 96.95
TIGR02974329 phageshock_pspF psp operon transcriptional activat 96.91
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 96.89
COG1485 367 Predicted ATPase [General function prediction only 96.89
PLN03210 1153 Resistant to P. syringae 6; Provisional 96.89
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 96.88
PRK05564313 DNA polymerase III subunit delta'; Validated 96.88
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 96.86
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 96.86
cd03216163 ABC_Carb_Monos_I This family represents the domain 96.86
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 96.86
PRK06067234 flagellar accessory protein FlaH; Validated 96.85
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 96.85
PHA02624 647 large T antigen; Provisional 96.85
PRK03839180 putative kinase; Provisional 96.85
PRK05818 261 DNA polymerase III subunit delta'; Validated 96.84
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 96.82
KOG1968|consensus 871 96.81
PRK10416318 signal recognition particle-docking protein FtsY; 96.81
cd01393226 recA_like RecA is a bacterial enzyme which has rol 96.8
PRK00625173 shikimate kinase; Provisional 96.77
KOG1051|consensus 898 96.75
COG0606490 Predicted ATPase with chaperone activity [Posttran 96.75
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 96.74
KOG1969|consensus877 96.74
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 96.73
PHA02774613 E1; Provisional 96.72
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 96.72
TIGR02688 449 conserved hypothetical protein TIGR02688. Members 96.72
PRK14532188 adenylate kinase; Provisional 96.71
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.71
cd01122 271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 96.71
COG4650 531 RtcR Sigma54-dependent transcription regulator con 96.71
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 96.71
COG1618179 Predicted nucleotide kinase [Nucleotide transport 96.7
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 96.69
PRK13765 637 ATP-dependent protease Lon; Provisional 96.69
cd01128 249 rho_factor Transcription termination factor rho is 96.69
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 96.68
KOG3347|consensus176 96.68
PRK09354 349 recA recombinase A; Provisional 96.67
PRK13949169 shikimate kinase; Provisional 96.65
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.65
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 96.64
PRK06762166 hypothetical protein; Provisional 96.63
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 96.63
PRK09376 416 rho transcription termination factor Rho; Provisio 96.63
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 96.62
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 96.6
PRK10536262 hypothetical protein; Provisional 96.6
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 96.59
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 96.57
PRK11608326 pspF phage shock protein operon transcriptional ac 96.57
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 96.56
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 96.55
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 96.55
PRK13406584 bchD magnesium chelatase subunit D; Provisional 96.54
PRK08699325 DNA polymerase III subunit delta'; Validated 96.51
PRK06217183 hypothetical protein; Validated 96.51
PF12775 272 AAA_7: P-loop containing dynein motor region D3; P 96.5
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 96.5
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 96.5
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 96.5
PRK14531183 adenylate kinase; Provisional 96.49
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 96.48
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 96.48
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 96.47
COG0470325 HolB ATPase involved in DNA replication [DNA repli 96.46
TIGR00416 454 sms DNA repair protein RadA. The gene protuct code 96.46
TIGR01425 429 SRP54_euk signal recognition particle protein SRP5 96.46
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 96.44
PF14516 331 AAA_35: AAA-like domain 96.44
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 96.44
PRK14530215 adenylate kinase; Provisional 96.43
PRK13948182 shikimate kinase; Provisional 96.43
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.42
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 96.41
>KOG0733|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.1e-68  Score=595.80  Aligned_cols=440  Identities=30%  Similarity=0.456  Sum_probs=349.5

Q ss_pred             cCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhhh
Q psy11009         62 SKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTVG  137 (863)
Q Consensus        62 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg  137 (863)
                      -|.|++|. |-++-..|+|+-         |+||||||.+|.++|.   |+|+++..|++              .+.|-|
T Consensus       209 i~~Pe~~~~lGv~PprGvLlH---------GPPGCGKT~lA~AiAgel~vPf~~isApei--------------vSGvSG  265 (802)
T KOG0733|consen  209 IKHPEVFSSLGVRPPRGVLLH---------GPPGCGKTSLANAIAGELGVPFLSISAPEI--------------VSGVSG  265 (802)
T ss_pred             hcCchhHhhcCCCCCCceeee---------CCCCccHHHHHHHHhhhcCCceEeecchhh--------------hcccCc
Confidence            78999999 988889999999         9999999999999998   99999999999              899999


Q ss_pred             hHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCC---CCCeEEEEccC
Q psy11009        138 SSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFP---STPVQYSIQKG  211 (863)
Q Consensus       138 ~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~---~~~VivIaATN  211 (863)
                      +||+++|.+|+.+        .+..||||||||||+|+.+|..   ++.+|++.|||+.||++...   +++|+||||||
T Consensus       266 ESEkkiRelF~~A--------~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn  337 (802)
T KOG0733|consen  266 ESEKKIRELFDQA--------KSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN  337 (802)
T ss_pred             ccHHHHHHHHHHH--------hccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence            9999999999976        8899999999999999999965   77899999999999999866   56899999999


Q ss_pred             CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009        212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII  289 (863)
Q Consensus       212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~  289 (863)
                      |||.|||||+|  |||+-|.++.|+..+|.+||+..++++.++.++|+..||++|+||-||||..+|.+|+..|++|.+.
T Consensus       338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld  417 (802)
T KOG0733|consen  338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILD  417 (802)
T ss_pred             CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999998532


Q ss_pred             CCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCccccc
Q psy11009        290 GLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLIS  369 (863)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~  369 (863)
                      .                             ..+..++                                           
T Consensus       418 ~-----------------------------~~~p~~~-------------------------------------------  425 (802)
T KOG0733|consen  418 Q-----------------------------SSSPLTK-------------------------------------------  425 (802)
T ss_pred             c-----------------------------ccCcccc-------------------------------------------
Confidence            1                             0000000                                           


Q ss_pred             cccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHH
Q psy11009        370 RDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTT  449 (863)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~  449 (863)
                             .+.            +|.+-+.+++-|=   +.                     |.++.+|..          
T Consensus       426 -------~~~------------~ed~~~~~~~~d~---S~---------------------i~~~~~~~~----------  452 (802)
T KOG0733|consen  426 -------VPI------------SEDSSNKDAEEDQ---SS---------------------IKITSNAER----------  452 (802)
T ss_pred             -------CCc------------cccccCCCccchh---hh---------------------hhcCCcccc----------
Confidence                   000            0000000011110   00                     111222110          


Q ss_pred             HHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCC
Q psy11009        450 IARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNS  529 (863)
Q Consensus       450 laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~  529 (863)
                                   .. -.+.++   ++++..=.|| +-            .  |+..-|.-+++.|-..-+         
T Consensus       453 -------------~~-~ld~v~---~~~i~~~~d~-~S------------~--E~~~~L~i~~eDF~~Al~---------  491 (802)
T KOG0733|consen  453 -------------PL-ELDRVV---QDAILNNPDP-LS------------K--ELLEGLSIKFEDFEEALS---------  491 (802)
T ss_pred             -------------cc-cHHHHH---HHHHHhCCCC-cC------------h--HHhccceecHHHHHHHHH---------
Confidence                         00 011111   2223322333 11            0  011111122222222110         


Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCC
Q psy11009        530 RPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPA  609 (863)
Q Consensus       530 ~~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~  609 (863)
                                                                 +-|+                                 
T Consensus       492 -------------------------------------------~iQP---------------------------------  495 (802)
T KOG0733|consen  492 -------------------------------------------KIQP---------------------------------  495 (802)
T ss_pred             -------------------------------------------hcCc---------------------------------
Confidence                                                       0000                                 


Q ss_pred             CCCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCCh
Q psy11009        610 NNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDN  689 (863)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~  689 (863)
                                                                                                      
T Consensus       496 --------------------------------------------------------------------------------  495 (802)
T KOG0733|consen  496 --------------------------------------------------------------------------------  495 (802)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009        690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGT  768 (863)
Q Consensus       690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~  768 (863)
                          ...++-....|.++|+||+++++++.+|..+|.+|.++|+.|+.+| .++.||||+||||||||+||+|+|++.+.
T Consensus       496 ----SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~  571 (802)
T KOG0733|consen  496 ----SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA  571 (802)
T ss_pred             ----chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence                0011122346789999999999999999999999999999999998 77899999999999999999999999999


Q ss_pred             cEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11009        769 TFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSK  848 (863)
Q Consensus       769 ~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~  848 (863)
                      .|+.|.+.+|.++|+||+|+.+|.+|..|+..+||||||||+|+|+++|+.++ .+...|+++|||..|||+...    .
T Consensus       572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R----~  646 (802)
T KOG0733|consen  572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER----R  646 (802)
T ss_pred             ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc----c
Confidence            99999999999999999999999999999999999999999999999997765 788899999999999999654    4


Q ss_pred             ceEEEEecCCCCCCC
Q psy11009        849 VVMVLAATNFPWEGA  863 (863)
Q Consensus       849 ~VvVIaTTN~P~~ID  863 (863)
                      .|.||+|||||+.||
T Consensus       647 gV~viaATNRPDiID  661 (802)
T KOG0733|consen  647 GVYVIAATNRPDIID  661 (802)
T ss_pred             ceEEEeecCCCcccc
Confidence            499999999999998

>KOG0738|consensus Back     alignment and domain information
>KOG0730|consensus Back     alignment and domain information
>KOG0734|consensus Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0733|consensus Back     alignment and domain information
>KOG0731|consensus Back     alignment and domain information
>KOG0730|consensus Back     alignment and domain information
>KOG0736|consensus Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>KOG0735|consensus Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>KOG0738|consensus Back     alignment and domain information
>KOG0736|consensus Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0741|consensus Back     alignment and domain information
>KOG0739|consensus Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG0737|consensus Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728|consensus Back     alignment and domain information
>KOG0735|consensus Back     alignment and domain information
>KOG0652|consensus Back     alignment and domain information
>KOG0739|consensus Back     alignment and domain information
>KOG0726|consensus Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0729|consensus Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>KOG0727|consensus Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG0740|consensus Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>KOG0651|consensus Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>KOG0734|consensus Back     alignment and domain information
>KOG0727|consensus Back     alignment and domain information
>KOG0732|consensus Back     alignment and domain information
>KOG0737|consensus Back     alignment and domain information
>KOG0726|consensus Back     alignment and domain information
>KOG0740|consensus Back     alignment and domain information
>KOG0728|consensus Back     alignment and domain information
>KOG0729|consensus Back     alignment and domain information
>KOG0652|consensus Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0731|consensus Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0651|consensus Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>KOG0732|consensus Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>KOG0741|consensus Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0742|consensus Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0744|consensus Back     alignment and domain information
>KOG0744|consensus Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>KOG0743|consensus Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>KOG0742|consensus Back     alignment and domain information
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0743|consensus Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>KOG2028|consensus Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG2004|consensus Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0991|consensus Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>KOG1969|consensus Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>KOG0745|consensus Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1051|consensus Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0990|consensus Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>KOG2028|consensus Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>KOG1514|consensus Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2004|consensus Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1970|consensus Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2227|consensus Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1942|consensus Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0745|consensus Back     alignment and domain information
>KOG1514|consensus Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>KOG2035|consensus Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG2170|consensus Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>COG1485 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>PRK05818 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1968|consensus Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>KOG1051|consensus Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>KOG1969|consensus Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PHA02774 E1; Provisional Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>KOG3347|consensus Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
2qp9_X 355 Crystal Structure Of S.Cerevisiae Vps4 Length = 355 7e-50
2rko_A 331 Crystal Structure Of The Vps4p-Dimer Length = 331 2e-48
3eih_A 340 Crystal Structure Of S.Cerevisiae Vps4 In The Prese 5e-48
3eie_A 322 Crystal Structure Of S.Cerevisiae Vps4 In The So4-B 1e-47
2zam_A 444 Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt 1e-47
1xwi_A 322 Crystal Structure Of Vps4b Length = 322 6e-47
3vfd_A 389 Human Spastin Aaa Domain Length = 389 2e-46
3d8b_A 357 Crystal Structure Of Human Fidgetin-Like Protein 1 3e-44
3b9p_A 297 Spastin Length = 297 3e-43
2x8a_A 274 Human Nuclear Valosin Containing Protein Like (Nvl) 7e-31
3h4m_A 285 Aaa Atpase Domain Of The Proteasome- Activating Nuc 1e-28
4b4t_J 405 Near-Atomic Resolution Structural Model Of The Yeas 2e-28
3cf1_A 806 Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len 6e-28
1r7r_A 816 The Crystal Structure Of Murine P97VCP AT 3.6A Leng 6e-28
3cf0_A 301 Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH 1e-27
4b4t_L 437 Near-Atomic Resolution Structural Model Of The Yeas 6e-27
4b4t_K 428 Near-Atomic Resolution Structural Model Of The Yeas 7e-27
4b4t_M434 Near-Atomic Resolution Structural Model Of The Yeas 9e-27
3hu3_A 489 Structure Of P97 N-D1 R155h Mutant In Complex With 3e-26
3hu1_A 489 Structure Of P97 N-D1 R95g Mutant In Complex With A 4e-26
3hu2_A 489 Structure Of P97 N-D1 R86a Mutant In Complex With A 4e-26
1e32_A 458 Structure Of The N-Terminal Domain And The D1 Aaa D 5e-26
4b4t_H 467 Near-Atomic Resolution Structural Model Of The Yeas 8e-25
4b4t_I 437 Near-Atomic Resolution Structural Model Of The Yeas 2e-24
2r62_A 268 Crystal Structure Of Helicobacter Pylori Atp Depend 9e-23
2ce7_A 476 Edta Treated Length = 476 1e-22
3kds_E 465 Apo-ftsh Crystal Structure Length = 465 5e-22
1lv7_A257 Crystal Structure Of The Aaa Domain Of Ftsh Length 2e-21
2dhr_A 499 Whole Cytosolic Region Of Atp-Dependent Metalloprot 8e-19
4eiw_A 508 Whole Cytosolic Region Of Atp-Dependent Metalloprot 8e-19
1ixz_A254 Crystal Structure Of The Ftsh Atpase Domain From Th 2e-18
1iy2_A278 Crystal Structure Of The Ftsh Atpase Domain From Th 2e-18
2qz4_A 262 Human Paraplegin, Aaa Domain In Complex With Adp Le 5e-17
2rpa_A78 The Solution Structure Of N-Terminal Domain Of Micr 7e-07
1ofh_A 310 Asymmetric Complex Between Hslv And I-domain Delete 3e-05
3m6a_A 543 Crystal Structure Of Bacillus Subtilis Lon C-Termin 8e-04
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 5/190 (2%)
Query: 673 DKPVMQERRFESYGCDND-LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWM 731
           +K + QE   ++ G DN  L   L   ++ + PN++W+D+A L  AK  L+EAV+LP+  
Sbjct: 14  NKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73
Query: 732 PEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVR 791
           P  FKG R+P  G+L+ GPPGTGK+ LAKAVATE  +TFF+V SS L SK+ GESEKLV+
Sbjct: 74  PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 792 LLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVM 851
            LF MAR   PS IFID++D+L   RG E E EASRR+K+ELLVQM+G+    + S+ V+
Sbjct: 134 QLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVG---NDSQGVL 189
Query: 852 VLAATNFPWE 861
           VL ATN PW+
Sbjct: 190 VLGATNIPWQ 199
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 Back     alignment and structure
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 Back     alignment and structure
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 Back     alignment and structure
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 Back     alignment and structure
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 Back     alignment and structure
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 Back     alignment and structure
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 Back     alignment and structure
>pdb|3B9P|A Chain A, Spastin Length = 297 Back     alignment and structure
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 Back     alignment and structure
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 Back     alignment and structure
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 Back     alignment and structure
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 Back     alignment and structure
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Back     alignment and structure
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 Back     alignment and structure
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 Back     alignment and structure
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 Back     alignment and structure
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 Back     alignment and structure
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 Back     alignment and structure
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 Back     alignment and structure
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 Back     alignment and structure
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 Back     alignment and structure
>pdb|2CE7|A Chain A, Edta Treated Length = 476 Back     alignment and structure
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 Back     alignment and structure
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 Back     alignment and structure
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Back     alignment and structure
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 Back     alignment and structure
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 Back     alignment and structure
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 Back     alignment and structure
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 Back     alignment and structure
>pdb|2RPA|A Chain A, The Solution Structure Of N-Terminal Domain Of Microtubule S Enzyme Length = 78 Back     alignment and structure
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 Back     alignment and structure
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain Length = 543 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
3vfd_A 389 Spastin; ATPase, microtubule severing, hydrolase; 1e-100
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 3e-39
3b9p_A 297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 1e-99
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 8e-41
3d8b_A 357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 3e-99
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 2e-38
3eie_A 322 Vacuolar protein sorting-associated protein 4; AAA 4e-98
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 5e-38
1xwi_A 322 SKD1 protein; VPS4B, AAA ATPase, protein transport 2e-96
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 8e-38
2qp9_X 355 Vacuolar protein sorting-associated protein 4; ATP 1e-94
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 7e-37
2zan_A 444 Vacuolar protein sorting-associating protein 4B; S 3e-91
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 1e-35
2x8a_A 274 Nuclear valosin-containing protein-like; nuclear p 6e-58
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 2e-27
3cf0_A 301 Transitional endoplasmic reticulum ATPase; AAA, P9 1e-57
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 8e-30
3h4m_A 285 Proteasome-activating nucleotidase; ATPase, PAN, A 6e-55
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 1e-18
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 3e-53
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 2e-43
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 3e-29
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 7e-23
3hu3_A 489 Transitional endoplasmic reticulum ATPase; VCP, tr 1e-51
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 2e-25
3t15_A 293 Ribulose bisphosphate carboxylase/oxygenase activ 4e-40
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 4e-09
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 3e-36
2r62_A 268 Cell division protease FTSH homolog; ATPase domain 9e-32
2r62_A268 Cell division protease FTSH homolog; ATPase domain 3e-14
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 2e-31
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 2e-12
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 2e-31
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 1e-12
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 5e-31
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 4e-13
2qz4_A 262 Paraplegin; AAA+, SPG7, protease, ADP, structural 6e-31
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 1e-13
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 7e-27
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 2e-11
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 2e-26
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 1e-11
2krk_A86 26S protease regulatory subunit 8; structural geno 7e-18
2rpa_A78 Katanin P60 ATPase-containing subunit A1; AAA ATPa 6e-17
3kw6_A78 26S protease regulatory subunit 8; structural geno 3e-15
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 9e-13
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 3e-12
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 8e-09
3syl_A 309 Protein CBBX; photosynthesis, rubisco activase, AA 1e-07
3pvs_A 447 Replication-associated recombination protein A; ma 4e-06
1ofh_A 310 ATP-dependent HSL protease ATP-binding subunit HSL 6e-06
1g8p_A 350 Magnesium-chelatase 38 kDa subunit; parallel beta 7e-06
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 6e-04
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 9e-04
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  317 bits (814), Expect = e-100
 Identities = 99/277 (35%), Positives = 150/277 (54%), Gaps = 16/277 (5%)

Query: 586 SSIPNKSTPQSNNS-TLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSN 644
            ++P +  P ++ S +L R            +  +++ +Y  +   S   +       ++
Sbjct: 3   GAVPKRKDPLTHTSNSLPRSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTH 62

Query: 645 NAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNP 704
                +N TN  +   +                ++        D++L  ++  ++V    
Sbjct: 63  KGTPKTNRTNKPSTPTTATRK------------KKDLKNFRNVDSNLANLIMNEIVDNGT 110

Query: 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764
            +++DDIA    AK+ L+E V+LP   PE F G+R P +G+L+ GPPG GKTMLAKAVA 
Sbjct: 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170

Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
           E   TFFN+ +++LTSKY GE EKLVR LF +AR   PS IFID++DSL   R  E EH+
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR-EGEHD 229

Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
           ASRR+K+E L++ DG+ SA D    V+V+ ATN P E
Sbjct: 230 ASRRLKTEFLIEFDGVQSAGDDR--VLVMGATNRPQE 264
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 Back     alignment and structure
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus} Length = 78 Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query863
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 100.0
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 100.0
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 100.0
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 100.0
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 100.0
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 100.0
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 100.0
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 100.0
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 100.0
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 100.0
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 100.0
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 100.0
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 100.0
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 100.0
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 100.0
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 99.98
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 99.98
4b4t_J 405 26S protease regulatory subunit 8 homolog; hydrola 99.97
4b4t_I 437 26S protease regulatory subunit 4 homolog; hydrola 99.97
4b4t_L 437 26S protease subunit RPT4; hydrolase, AAA-atpases, 99.97
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 99.97
4b4t_H 467 26S protease regulatory subunit 7 homolog; hydrola 99.96
4b4t_K 428 26S protease regulatory subunit 6B homolog; hydrol 99.96
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 99.96
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 99.95
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 99.95
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.95
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 99.95
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 99.95
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.94
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.94
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 99.94
2r62_A268 Cell division protease FTSH homolog; ATPase domain 99.93
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.92
1xwi_A 322 SKD1 protein; VPS4B, AAA ATPase, protein transport 99.92
2zan_A 444 Vacuolar protein sorting-associating protein 4B; S 99.91
3eie_A 322 Vacuolar protein sorting-associated protein 4; AAA 99.91
2qp9_X 355 Vacuolar protein sorting-associated protein 4; ATP 99.9
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 99.9
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 99.89
3cf0_A 301 Transitional endoplasmic reticulum ATPase; AAA, P9 99.89
2rpa_A78 Katanin P60 ATPase-containing subunit A1; AAA ATPa 99.89
3d8b_A 357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 99.88
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.88
3b9p_A 297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 99.88
3vfd_A 389 Spastin; ATPase, microtubule severing, hydrolase; 99.87
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.86
2x8a_A 274 Nuclear valosin-containing protein-like; nuclear p 99.86
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 99.85
3h4m_A 285 Proteasome-activating nucleotidase; ATPase, PAN, A 99.84
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 99.84
3hu3_A 489 Transitional endoplasmic reticulum ATPase; VCP, tr 99.84
2qz4_A 262 Paraplegin; AAA+, SPG7, protease, ADP, structural 99.83
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.77
3t15_A 293 Ribulose bisphosphate carboxylase/oxygenase activ 99.77
2r62_A 268 Cell division protease FTSH homolog; ATPase domain 99.77
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 99.75
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.71
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 99.7
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 99.7
2di4_A238 Zinc protease, cell division protein FTSH homolog; 99.65
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 99.62
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.61
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.55
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.54
3syl_A 309 Protein CBBX; photosynthesis, rubisco activase, AA 99.52
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 99.51
2krk_A86 26S protease regulatory subunit 8; structural geno 99.51
3hws_A 363 ATP-dependent CLP protease ATP-binding subunit CL; 99.51
3kw6_A78 26S protease regulatory subunit 8; structural geno 99.5
1g41_A 444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.5
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 99.5
3aji_B83 S6C, proteasome (prosome, macropain) 26S subunit, 99.49
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 99.49
3pfi_A 338 Holliday junction ATP-dependent DNA helicase RUVB; 99.47
1ofh_A 310 ATP-dependent HSL protease ATP-binding subunit HSL 99.47
3vlf_B88 26S protease regulatory subunit 7 homolog; heat re 99.45
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.45
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.43
3u61_B 324 DNA polymerase accessory protein 44; AAA+, ATP hyd 99.43
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.41
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 99.39
1um8_A 376 ATP-dependent CLP protease ATP-binding subunit CL; 99.39
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.38
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 99.36
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.36
1hqc_A 324 RUVB; extended AAA-ATPase domain, complex with nuc 99.36
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 99.36
2dzn_B82 26S protease regulatory subunit 6B homolog; ankyri 99.35
3uk6_A 368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 99.34
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.33
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 99.33
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 99.32
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.32
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.32
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.31
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 99.29
3co5_A143 Putative two-component system transcriptional RES 99.29
3bos_A242 Putative DNA replication factor; P-loop containing 99.29
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 99.29
2chg_A226 Replication factor C small subunit; DNA-binding pr 99.28
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.28
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.27
3pvs_A 447 Replication-associated recombination protein A; ma 99.27
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 99.25
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 99.24
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.24
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.23
1sxj_D 353 Activator 1 41 kDa subunit; clamp loader, processi 99.23
3pvs_A447 Replication-associated recombination protein A; ma 99.22
1l8q_A 324 Chromosomal replication initiator protein DNAA; AA 99.21
2chq_A 319 Replication factor C small subunit; DNA-binding pr 99.2
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.2
1iqp_A 327 RFCS; clamp loader, extended AAA-ATPase domain, co 99.19
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 99.19
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 99.17
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.16
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 99.14
1sxj_B 323 Activator 1 37 kDa subunit; clamp loader, processi 99.14
4fcw_A 311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.14
1jr3_A 373 DNA polymerase III subunit gamma; processivity, pr 99.13
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 99.12
2bjv_A 265 PSP operon transcriptional activator; AAA, transcr 99.12
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 99.12
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 99.12
1sxj_E 354 Activator 1 40 kDa subunit; clamp loader, processi 99.1
2v1u_A 387 Cell division control protein 6 homolog; DNA repli 99.1
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.09
1sxj_C 340 Activator 1 40 kDa subunit; clamp loader, processi 99.08
2z4s_A 440 Chromosomal replication initiator protein DNAA; AA 99.07
3te6_A 318 Regulatory protein SIR3; heterochromatin, gene sil 99.07
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 99.06
1ojl_A 304 Transcriptional regulatory protein ZRAR; response 99.06
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.05
1g8p_A 350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.0
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 99.0
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 98.99
1in4_A 334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 98.98
2qby_A 386 CDC6 homolog 1, cell division control protein 6 ho 98.97
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 98.97
3bos_A242 Putative DNA replication factor; P-loop containing 98.97
2qby_B 384 CDC6 homolog 3, cell division control protein 6 ho 98.93
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 98.91
2r44_A 331 Uncharacterized protein; putative ATPase, structur 98.91
2chq_A319 Replication factor C small subunit; DNA-binding pr 98.89
1fnn_A 389 CDC6P, cell division control protein 6; ORC1, AAA 98.87
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 98.85
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 98.83
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 98.82
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 98.82
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.8
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 98.79
2gno_A 305 DNA polymerase III, gamma subunit-related protein; 98.7
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 98.69
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 98.68
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 98.67
3cmw_A1706 Protein RECA, recombinase A; homologous recombinat 98.65
1a5t_A 334 Delta prime, HOLB; zinc finger, DNA replication; 2 98.64
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 98.63
3f9v_A 595 Minichromosome maintenance protein MCM; replicativ 98.62
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 98.61
1ojl_A304 Transcriptional regulatory protein ZRAR; response 98.6
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 98.59
2qgz_A308 Helicase loader, putative primosome component; str 98.58
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 98.56
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.56
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 98.49
1w5s_A 412 Origin recognition complex subunit 2 ORC2; replica 98.41
1ny5_A 387 Transcriptional regulator (NTRC family); AAA+ ATPa 98.39
3co5_A143 Putative two-component system transcriptional RES 98.36
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 98.33
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 98.24
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 98.14
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 98.14
1svm_A 377 Large T antigen; AAA+ fold, viral protein; HET: AT 98.09
2gno_A305 DNA polymerase III, gamma subunit-related protein; 98.03
1tue_A212 Replication protein E1; helicase, replication, E1E 97.97
2qen_A 350 Walker-type ATPase; unknown function; HET: ADP; 2. 97.94
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 97.91
3f8t_A506 Predicted ATPase involved in replication control, 97.82
2fna_A 357 Conserved hypothetical protein; structural genomic 97.8
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 97.75
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 97.64
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 97.59
3upu_A 459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.57
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 97.54
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 97.46
3hr8_A 356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.43
1xp8_A 366 RECA protein, recombinase A; recombination, radior 97.43
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.4
3f8t_A 506 Predicted ATPase involved in replication control, 97.34
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 97.34
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.33
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.29
2zr9_A 349 Protein RECA, recombinase A; recombination, RECA m 97.27
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 97.21
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 97.2
2kjq_A149 DNAA-related protein; solution structure, NESG, st 97.17
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 97.14
1u94_A 356 RECA protein, recombinase A; homologous recombinat 97.11
2z43_A324 DNA repair and recombination protein RADA; archaea 97.1
2fna_A357 Conserved hypothetical protein; structural genomic 97.08
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 97.04
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 97.03
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 97.02
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 96.98
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 96.96
4a74_A231 DNA repair and recombination protein RADA; hydrola 96.95
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.9
3dm5_A 443 SRP54, signal recognition 54 kDa protein; protein- 96.85
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 96.77
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 96.74
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 96.73
1via_A175 Shikimate kinase; structural genomics, transferase 96.73
3io5_A 333 Recombination and repair protein; storage dimer, i 96.73
1vma_A306 Cell division protein FTSY; TM0570, structural gen 96.72
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.71
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 96.7
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 96.69
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 96.64
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 96.63
3bh0_A 315 DNAB-like replicative helicase; ATPase, replicatio 96.58
1kag_A173 SKI, shikimate kinase I; transferase, structural g 96.57
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 96.55
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 96.55
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.54
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 96.5
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 96.49
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.48
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 96.48
3crm_A 323 TRNA delta(2)-isopentenylpyrophosphate transferase 96.47
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 96.47
3kl4_A 433 SRP54, signal recognition 54 kDa protein; signal r 96.45
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 96.44
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 96.43
2r6a_A 454 DNAB helicase, replicative helicase; replication, 96.41
2ze6_A 253 Isopentenyl transferase; crown GALL tumor, cytokin 96.41
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 96.4
1gvn_B 287 Zeta; postsegregational killing system, plasmid; 1 96.39
3e1s_A 574 Exodeoxyribonuclease V, subunit RECD; alpha and be 96.39
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 96.38
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 96.38
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 96.37
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 96.36
3a4m_A 260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 96.33
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 96.3
1nlf_A 279 Regulatory protein REPA; replicative DNA helicase 96.29
2q6t_A 444 DNAB replication FORK helicase; hydrolase; 2.90A { 96.29
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 96.28
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 96.28
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 96.27
2vli_A183 Antibiotic resistance protein; transferase, tunica 96.25
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 96.25
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 96.25
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 96.23
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 96.22
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 96.21
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 96.21
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 96.21
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 96.2
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 96.17
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 96.15
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 96.14
3tlx_A243 Adenylate kinase 2; structural genomics, structura 96.14
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 96.12
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 96.09
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 96.08
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.06
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.05
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 96.02
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 96.01
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.0
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 96.0
2eyu_A 261 Twitching motility protein PILT; pilus retraction 95.97
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 95.92
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 95.91
3b6e_A216 Interferon-induced helicase C domain-containing P; 95.9
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 95.9
1tue_A212 Replication protein E1; helicase, replication, E1E 95.89
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 95.89
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 95.89
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 95.87
1q57_A 503 DNA primase/helicase; dntpase, DNA replication, tr 95.86
2ga8_A 359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 95.85
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 95.81
1cke_A 227 CK, MSSA, protein (cytidine monophosphate kinase); 95.81
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 95.76
2xb4_A 223 Adenylate kinase; ATP-binding, nucleotide-binding, 95.73
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 95.7
1cr0_A 296 DNA primase/helicase; RECA-type protein fold, tran 95.69
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 95.69
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 95.65
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 95.63
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 95.6
2qgz_A308 Helicase loader, putative primosome component; str 95.54
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 95.51
2ewv_A 372 Twitching motility protein PILT; pilus retraction 95.51
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 95.48
3bgw_A 444 DNAB-like replicative helicase; ATPase, replicatio 95.47
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 95.47
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 95.47
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 95.41
1jr3_D 343 DNA polymerase III, delta subunit; processivity, p 95.4
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 95.36
3r20_A 233 Cytidylate kinase; structural genomics, seattle st 95.32
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 95.29
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 95.2
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 95.16
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 95.12
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 95.11
3a8t_A 339 Adenylate isopentenyltransferase; rossmann fold pr 95.08
4e22_A 252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 95.06
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.04
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 94.99
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 94.97
1w36_D 608 RECD, exodeoxyribonuclease V alpha chain; recombin 94.92
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 94.91
2v3c_C 432 SRP54, signal recognition 54 kDa protein; nucleoti 94.9
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 94.89
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 94.83
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 94.82
1uj2_A 252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 94.75
2h92_A219 Cytidylate kinase; rossmann fold, transferase; HET 94.71
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 94.71
3foz_A 316 TRNA delta(2)-isopentenylpyrophosphate transferas; 94.7
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 94.68
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 94.65
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 94.64
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 94.6
1x6v_B 630 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 94.46
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 94.46
1ltq_A 301 Polynucleotide kinase; phosphatase, alpha/beta, P- 94.45
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 94.42
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 94.41
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 94.4
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 94.4
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 94.39
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 94.35
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 94.34
3fdi_A201 Uncharacterized protein; cytidylate kinase like pr 94.29
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 94.27
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 94.27
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 94.26
3d3q_A 340 TRNA delta(2)-isopentenylpyrophosphate transferase 94.24
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 94.23
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 94.17
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 94.13
3exa_A 322 TRNA delta(2)-isopentenylpyrophosphate transferase 94.13
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 94.12
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 94.1
4a1f_A 338 DNAB helicase, replicative DNA helicase; hydrolase 94.06
1p9r_A 418 General secretion pathway protein E; bacterial typ 94.05
2axn_A 520 6-phosphofructo-2-kinase/fructose-2,6- biphosphata 94.02
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 94.0
1hv8_A 367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 93.88
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 93.85
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 93.79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 93.77
3thx_B 918 DNA mismatch repair protein MSH3; ABC family ATPas 93.67
3eph_A 409 TRNA isopentenyltransferase; transferase, alternat 93.63
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 93.58
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 93.54
2iut_A 574 DNA translocase FTSK; nucleotide-binding, chromoso 93.48
3thx_A 934 DNA mismatch repair protein MSH2; ABC family ATPas 93.43
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 93.41
2oap_1 511 GSPE-2, type II secretion system protein; hexameri 93.38
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 93.38
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 93.37
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 93.37
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 93.35
2j37_W 504 Signal recognition particle 54 kDa protein (SRP54) 93.13
4b3f_X 646 DNA-binding protein smubp-2; hydrolase, helicase; 93.1
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 93.08
2xxa_A 433 Signal recognition particle protein; protein trans 93.04
3hdt_A223 Putative kinase; structura genomics, PSI-2, protei 93.0
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 92.96
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 92.88
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 92.8
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 92.63
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 92.62
3gmt_A 230 Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle 92.62
1xti_A 391 Probable ATP-dependent RNA helicase P47; alpha-bet 92.38
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 92.37
1wp9_A 494 ATP-dependent RNA helicase, putative; ATPase, DNA 92.35
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 92.31
2qm8_A 337 GTPase/ATPase; G protein, G3E, metallochaperone, c 92.3
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 92.28
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 92.16
1odf_A 290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 92.16
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 92.15
3p32_A 355 Probable GTPase RV1496/MT1543; structural genomics 92.15
2j0s_A 410 ATP-dependent RNA helicase DDX48; mRNA processing, 92.12
3pey_A 395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 92.11
1s2m_A 400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 92.11
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 92.05
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 91.9
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 91.84
2ffh_A 425 Protein (FFH); SRP54, signal recognition particle, 91.8
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 91.71
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 91.64
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 91.62
3tbk_A 555 RIG-I helicase domain; DECH helicase, ATP binding, 91.61
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 91.5
1bif_A 469 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; 91.5
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 91.47
2cvh_A220 DNA repair and recombination protein RADB; filamen 91.4
2ius_A 512 DNA translocase FTSK; nucleotide-binding, chromoso 91.33
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 91.31
1a7j_A 290 Phosphoribulokinase; transferase, calvin cycle; 2. 91.28
1m8p_A573 Sulfate adenylyltransferase; rossmann fold, phosph 91.19
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 91.14
2fwr_A 472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 91.1
1sky_E 473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 91.08
1c9k_A180 COBU, adenosylcobinamide kinase; alpha/beta struct 91.07
2ged_A193 SR-beta, signal recognition particle receptor beta 91.06
2og2_A359 Putative signal recognition particle receptor; nuc 90.91
2i4i_A 417 ATP-dependent RNA helicase DDX3X; DEAD, structural 90.91
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 90.89
3fht_A 412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 90.59
3eiq_A 414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 90.53
1sq5_A 308 Pantothenate kinase; P-loop, transferase; HET: PAU 90.48
3tqf_A181 HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co 90.44
3aez_A 312 Pantothenate kinase; transferase, homodimer, COA b 90.36
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 90.35
2v6i_A 431 RNA helicase; membrane, hydrolase, transmembrane, 90.29
2ocp_A 241 DGK, deoxyguanosine kinase; protein-nucleotide com 90.24
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 90.2
4a2p_A 556 RIG-I, retinoic acid inducible protein I; hydrolas 89.95
1p5z_B 263 DCK, deoxycytidine kinase; nucleoside kinase, P-lo 89.8
3ice_A 422 Transcription termination factor RHO; transcriptio 89.76
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 89.64
3cr8_A552 Sulfate adenylyltranferase, adenylylsulfate kinase 89.33
1fuu_A 394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 89.26
2gk6_A 624 Regulator of nonsense transcripts 1; UPF1, helicas 89.21
4a74_A231 DNA repair and recombination protein RADA; hydrola 89.16
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 89.13
3tqc_A 321 Pantothenate kinase; biosynthesis of cofactors, pr 89.1
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 89.09
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 88.98
3k53_A 271 Ferrous iron transport protein B; GTPase fold, hel 88.88
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 88.87
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 88.86
2p67_A 341 LAO/AO transport system kinase; ARGK, structural G 88.82
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 88.79
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 88.74
3kta_A182 Chromosome segregation protein SMC; structural mai 88.73
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 88.72
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 88.67
3i5x_A 563 ATP-dependent RNA helicase MSS116; protein-RNA com 88.65
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 88.64
2o8b_B 1022 DNA mismatch repair protein MSH6; DNA damage respo 88.33
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 88.31
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 88.3
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 88.23
2v6x_A85 Vacuolar protein sorting-associated protein 4; pro 88.23
4i1u_A210 Dephospho-COA kinase; structural genomics, niaid, 88.16
1b0u_A 262 Histidine permease; ABC transporter, transport pro 88.15
1xjc_A169 MOBB protein homolog; structural genomics, midwest 88.13
3vkw_A 446 Replicase large subunit; alpha/beta domain, helica 88.11
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 88.07
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 88.07
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 88.05
1nrj_B218 SR-beta, signal recognition particle receptor beta 88.03
3szr_A 608 Interferon-induced GTP-binding protein MX1; interf 87.98
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 87.98
3fvq_A 359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 87.87
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 87.79
3lxw_A 247 GTPase IMAP family member 1; immunity, structural 87.64
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 87.64
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 87.61
3oiy_A 414 Reverse gyrase helicase domain; topoisomerase, DNA 87.61
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 87.61
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 87.6
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 87.58
3tmk_A216 Thymidylate kinase; phosphotransferase; HET: T5A; 87.58
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 87.55
2it1_A 362 362AA long hypothetical maltose/maltodextrin trans 87.37
3rlf_A 381 Maltose/maltodextrin import ATP-binding protein M; 87.37
2yyz_A 359 Sugar ABC transporter, ATP-binding protein; sugar 87.35
3sop_A 270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 87.3
2ghi_A260 Transport protein; multidrug resistance protein, M 87.3
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 87.27
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 87.17
1g6h_A 257 High-affinity branched-chain amino acid transport 87.15
2ixe_A 271 Antigen peptide transporter 1; ABC ATPase, hydrola 87.14
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 87.14
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 87.12
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 87.09
1v43_A 372 Sugar-binding transport ATP-binding protein; ATPas 87.08
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 87.05
1z47_A 355 CYSA, putative ABC-transporter ATP-binding protein 87.01
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 87.01
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 86.99
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 86.93
2wji_A165 Ferrous iron transport protein B homolog; membrane 86.9
2wjy_A 800 Regulator of nonsense transcripts 1; nonsense medi 86.89
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 86.87
2gks_A546 Bifunctional SAT/APS kinase; transferase, sulfuryl 86.8
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 86.78
3gfo_A 275 Cobalt import ATP-binding protein CBIO 1; structur 86.71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-61  Score=578.76  Aligned_cols=398  Identities=29%  Similarity=0.461  Sum_probs=322.4

Q ss_pred             ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009         59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL  134 (863)
Q Consensus        59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~  134 (863)
                      .||-+||.+|. +-+....|+|||         |.||||||++|+++|+   .+|+.+.++.|              .+.
T Consensus       221 ~~pl~~p~~f~~~g~~~p~GILL~---------GPPGTGKT~LAraiA~elg~~~~~v~~~~l--------------~sk  277 (806)
T 3cf2_A          221 ELPLRHPALFKAIGVKPPRGILLY---------GPPGTGKTLIARAVANETGAFFFLINGPEI--------------MSK  277 (806)
T ss_dssp             HHHHHCCGGGTSCCCCCCCEEEEE---------CCTTSCHHHHHHHHHTTTTCEEEEEEHHHH--------------HSS
T ss_pred             HHHccCHHHHhhcCCCCCCeEEEE---------CCCCCCHHHHHHHHHHHhCCeEEEEEhHHh--------------hcc
Confidence            46889999999 999999999999         9999999999999998   67777777777              778


Q ss_pred             hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009        135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG  211 (863)
Q Consensus       135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN  211 (863)
                      |+|+++.++|.+|..+        ....||||||||+|+|+.+|+.   +..++++++||.+||++.... +|+||||||
T Consensus       278 ~~gese~~lr~lF~~A--------~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN  348 (806)
T 3cf2_A          278 LAGESESNLRKAFEEA--------EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA-HVIVMAATN  348 (806)
T ss_dssp             CTTHHHHHHHHHHHHH--------TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG-CEEEEEECS
T ss_pred             cchHHHHHHHHHHHHH--------HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC-CEEEEEecC
Confidence            8999999999999875        6788999999999999999954   556899999999999998765 899999999


Q ss_pred             CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009        212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII  289 (863)
Q Consensus       212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~  289 (863)
                      +|+.||+||+|  |||+.|+|++||..+|.+||+.|++++++..++|+..||..|+||+||||+.+|++|++.|+++...
T Consensus       349 ~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~  428 (806)
T 3cf2_A          349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD  428 (806)
T ss_dssp             STTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999988520


Q ss_pred             CCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCccccc
Q psy11009        290 GLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLIS  369 (863)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~  369 (863)
                                                   .+.    .                             .+            
T Consensus       429 -----------------------------~i~----~-----------------------------~~------------  434 (806)
T 3cf2_A          429 -----------------------------LID----L-----------------------------ED------------  434 (806)
T ss_dssp             -----------------------------HGG----G-----------------------------TC------------
T ss_pred             -----------------------------ccc----c-----------------------------cc------------
Confidence                                         000    0                             00            


Q ss_pred             cccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHH
Q psy11009        370 RDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTT  449 (863)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~  449 (863)
                           ..                                 +                           .   .+..+   
T Consensus       435 -----~~---------------------------------~---------------------------~---~e~~~---  443 (806)
T 3cf2_A          435 -----ET---------------------------------I---------------------------D---AEVMN---  443 (806)
T ss_dssp             -----CC---------------------------------C---------------------------S---HHHHH---
T ss_pred             -----cc---------------------------------c---------------------------c---hhhhc---
Confidence                 00                                 0                           0   00000   


Q ss_pred             HHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCC
Q psy11009        450 IARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNS  529 (863)
Q Consensus       450 laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~  529 (863)
                                                .  ..|.-.                      +...-+   +...          
T Consensus       444 --------------------------~--~~v~~~----------------------Df~~Al---~~~~----------  460 (806)
T 3cf2_A          444 --------------------------S--LAVTMD----------------------DFRWAL---SQSN----------  460 (806)
T ss_dssp             --------------------------H--CEECTT----------------------HHHHHH---SSSS----------
T ss_pred             --------------------------c--ceeeHH----------------------HHHHHH---HhCC----------
Confidence                                      0  000000                      000000   0000          


Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCC
Q psy11009        530 RPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPA  609 (863)
Q Consensus       530 ~~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~  609 (863)
                       |                            .. .++                                            
T Consensus       461 -p----------------------------s~-~r~--------------------------------------------  466 (806)
T 3cf2_A          461 -P----------------------------SA-LRE--------------------------------------------  466 (806)
T ss_dssp             -C----------------------------CC-CCC--------------------------------------------
T ss_pred             -C----------------------------cc-ccc--------------------------------------------
Confidence             0                            00 000                                            


Q ss_pred             CCCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCCh
Q psy11009        610 NNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDN  689 (863)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~  689 (863)
                                                                                                      
T Consensus       467 --------------------------------------------------------------------------------  466 (806)
T 3cf2_A          467 --------------------------------------------------------------------------------  466 (806)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009        690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGT  768 (863)
Q Consensus       690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~  768 (863)
                               .....|+.+|++++|++++++.|.+.+.+|+.+|+.|...+ .+++|+|||||||||||++|+++|.+++.
T Consensus       467 ---------~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~  537 (806)
T 3cf2_A          467 ---------TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA  537 (806)
T ss_dssp             ---------CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred             ---------ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence                     00123467899999999999999999999999999999877 78899999999999999999999999999


Q ss_pred             cEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009        769 TFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDS  846 (863)
Q Consensus       769 ~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~  846 (863)
                      +|+.++++++.++|+|++++.++.+|..|+..+||||||||||+++++|+..  +++...++++++||.+||++...   
T Consensus       538 ~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~---  614 (806)
T 3cf2_A          538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---  614 (806)
T ss_dssp             EEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS---
T ss_pred             ceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC---
Confidence            9999999999999999999999999999999999999999999999998643  34567789999999999999654   


Q ss_pred             CCceEEEEecCCCCCCC
Q psy11009        847 SKVVMVLAATNFPWEGA  863 (863)
Q Consensus       847 ~~~VvVIaTTN~P~~ID  863 (863)
                       ..|+||+|||+||.||
T Consensus       615 -~~V~vi~aTN~p~~lD  630 (806)
T 3cf2_A          615 -KNVFIIGATNRPDIID  630 (806)
T ss_dssp             -SSEEEECC-CCSSSSC
T ss_pred             -CCEEEEEeCCCchhCC
Confidence             3499999999999998
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} Back     alignment and structure
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 863
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 2e-54
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 4e-23
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 3e-54
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 4e-24
d1r7ra3 265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 2e-44
d1r7ra3265 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p 6e-15
d1w44a_321 c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta 4e-34
d1e32a2 258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 2e-33
d1e32a2258 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p 8e-15
d1ofha_ 309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 1e-16
d1gvnb_ 273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 2e-16
d1gvnb_273 c.37.1.21 (B:) Plasmid maintenance system epsilon/ 2e-07
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 2e-16
d1d2na_246 c.37.1.20 (A:) Hexamerization domain of N-ethylmal 3e-06
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 2e-15
d1svma_362 c.37.1.20 (A:) Papillomavirus large T antigen heli 4e-04
d1ixsb2239 c.37.1.20 (B:4-242) Holliday junction helicase Ruv 5e-10
d1r6bx2268 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A 2e-07
d1in4a2238 c.37.1.20 (A:17-254) Holliday junction helicase Ru 3e-06
d1g8pa_ 333 c.37.1.20 (A:) ATPase subunit of magnesium chelata 4e-06
d1fnna2 276 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob 4e-06
d1g41a_ 443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 6e-06
d1sxja2253 c.37.1.20 (A:295-547) Replication factor C1 {Baker 5e-05
d1um8a_ 364 c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 5e-04
d1zp6a1176 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { 6e-04
d1lw7a2192 c.37.1.1 (A:220-411) Transcriptional regulator Nad 6e-04
d1qvra2 387 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus 0.001
d1ny5a2247 c.37.1.20 (A:138-384) Transcriptional activator si 0.001
d2i3ba1189 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 0.002
d1qhxa_178 c.37.1.3 (A:) Chloramphenicol phosphotransferase { 0.003
d2fnaa2 283 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo 0.004
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  187 bits (476), Expect = 2e-54
 Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPWKGVLMVGPPGTGKTM 757
           + +      + D+A   +AK  + E V   +  P  F+ +  +  KGVLMVGPPGTGKT+
Sbjct: 2   LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60

Query: 758 LAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
           LAKA+A E    FF +  S     + G     VR +FE A+  AP  IFIDEID++  +R
Sbjct: 61  LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120

Query: 818 GSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
           G+     H+   +  +++LV+MDG    E     ++V+AATN P  
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDV 162
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query863
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 100.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 100.0
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 100.0
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 99.95
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 99.95
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.94
d1e32a2 258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.93
d1r7ra3 265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 99.92
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.85
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 99.84
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 99.82
d1ofha_ 309 HslU {Haemophilus influenzae [TaxId: 727]} 99.78
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.73
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.58
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 99.56
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.55
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.54
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.45
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.45
d1svma_362 Papillomavirus large T antigen helicase domain {Si 99.4
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.36
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 99.36
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.34
d2ce7a1193 Cell division protein FtsH, C-terminal domain {The 99.32
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 99.31
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.26
d1r6bx3 315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.25
d1um8a_ 364 ClpX {Helicobacter pylori [TaxId: 210]} 99.17
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.17
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 99.17
d1qvra3 315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.17
d2di4a1202 Cell division protein FtsH, C-terminal domain {Aqu 99.16
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 99.15
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.1
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 99.08
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.01
d1g41a_ 443 HslU {Haemophilus influenzae [TaxId: 727]} 99.0
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 98.97
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 98.93
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 98.92
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 98.89
d1qvra2 387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 98.89
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 98.88
d1svma_362 Papillomavirus large T antigen helicase domain {Si 98.87
d1g8pa_ 333 ATPase subunit of magnesium chelatase, BchI {Rhodo 98.77
d1gvnb_ 273 Plasmid maintenance system epsilon/zeta, toxin zet 98.75
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 98.74
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 98.7
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 98.68
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 98.62
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 98.59
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 98.53
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 98.49
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 98.48
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 98.42
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 98.39
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 98.38
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 98.35
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 98.33
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 98.26
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 98.2
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 98.12
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.05
d2fnaa2 283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 97.9
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.8
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 97.68
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 97.55
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.51
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.46
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 97.41
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.31
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 97.3
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.26
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 97.17
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 97.15
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 97.15
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 97.14
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 97.09
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 97.08
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 97.02
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.96
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 96.93
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 96.93
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.92
d2qy9a2211 GTPase domain of the signal recognition particle r 96.91
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 96.9
d1okkd2207 GTPase domain of the signal recognition particle r 96.83
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 96.83
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.82
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.81
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 96.78
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 96.76
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 96.75
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 96.75
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 96.75
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.74
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 96.73
d1ckea_ 225 CMP kinase {Escherichia coli [TaxId: 562]} 96.65
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.65
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 96.65
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 96.64
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.62
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 96.57
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.54
d1p9ra_ 401 Extracellular secretion NTPase EpsE {Vibrio choler 96.53
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 96.51
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.5
d1cr2a_ 277 Gene 4 protein (g4p, DNA primase), helicase domain 96.4
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.39
d2a5yb3 277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 96.33
d1vmaa2213 GTPase domain of the signal recognition particle r 96.31
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 96.28
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 96.15
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.11
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 95.94
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 95.76
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.62
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.54
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 95.52
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 95.51
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 95.4
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 95.31
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 95.28
d1tuea_205 Replication protein E1 helicase domain {Human papi 95.07
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 95.0
d1nlfa_ 274 Hexameric replicative helicase repA {Escherichia c 94.96
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 94.77
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 94.72
d1g2912240 Maltose transport protein MalK, N-terminal domain 94.68
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 94.65
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 94.56
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 94.53
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 94.38
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 94.2
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 94.15
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 94.01
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 93.9
d2hyda1255 Putative multidrug export ATP-binding/permease pro 93.9
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 93.82
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 93.73
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 93.72
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 93.48
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 93.16
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 93.13
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 92.91
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 92.86
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 92.81
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 92.65
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 92.43
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 92.34
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 92.29
d1odfa_ 286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 92.19
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 92.06
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 92.02
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 91.83
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 91.62
d1h65a_ 257 Chloroplast protein translocon GTPase Toc34 {Garde 91.38
d2i1qa2 258 DNA repair protein Rad51, catalytic domain {Archae 91.23
d2fh5b1207 Signal recognition particle receptor beta-subunit 90.76
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 90.63
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 90.59
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 90.4
d1uaaa1 306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 90.37
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 90.17
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 90.08
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 90.02
d2p67a1 327 LAO/AO transport system kinase ArgK {Escherichia c 89.74
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 89.7
d1yrba1 244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 89.5
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 89.32
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 89.26
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 89.14
d2bmfa2 305 Dengue virus helicase {Dengue virus type 2 [TaxId: 89.13
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 89.02
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 88.98
d2qm8a1 323 Metallochaperone MeaB {Methylobacterium extorquens 88.9
d2awna2232 Maltose transport protein MalK, N-terminal domain 88.79
d1sq5a_ 308 Pantothenate kinase PanK {Escherichia coli [TaxId: 88.67
d1wfda_93 Hypothetical protein 1500032H18Rik {Mouse (Mus mus 88.54
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 88.5
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 88.5
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 88.12
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 87.59
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 87.59
d1pjra1 318 DEXX box DNA helicase {Bacillus stearothermophilus 87.59
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 87.56
d1nrjb_209 Signal recognition particle receptor beta-subunit 87.51
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.44
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 87.4
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 87.12
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 87.12
d1deka_ 241 Deoxynucleoside monophosphate kinase {Bacteriophag 87.06
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.03
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 86.87
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 86.85
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 86.81
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 86.79
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 86.79
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 86.6
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 86.53
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 86.53
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 86.51
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 86.5
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 86.36
d2ocpa1 241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 86.2
d1wr0a177 Vacuolar sorting protein 4b (VPS4B, SKD1 protein) 86.15
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 86.13
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 85.97
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 85.95
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 85.84
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 85.83
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 85.54
d1e9ra_ 433 Bacterial conjugative coupling protein TrwB {Esche 85.17
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 85.12
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 85.1
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 85.03
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 84.96
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 84.94
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 84.93
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 84.92
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 84.83
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 84.81
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 84.8
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 84.79
d1b0ua_ 258 ATP-binding subunit of the histidine permease {Sal 84.68
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 84.38
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 84.36
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 84.34
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 84.12
d2hyda1255 Putative multidrug export ATP-binding/permease pro 84.09
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 84.08
d1a7ja_ 288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 83.96
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 83.9
d1xpua3 289 Transcription termination factor Rho, ATPase domai 83.81
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 83.81
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 83.75
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 83.67
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 83.59
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 83.57
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 83.54
d1ihua1 296 Arsenite-translocating ATPase ArsA {Escherichia co 83.51
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 83.41
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 83.28
d1p5zb_ 241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 83.19
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 83.17
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 83.16
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 82.79
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 82.65
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 82.58
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 82.41
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 82.38
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 82.19
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 82.08
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 82.03
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 81.94
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 81.93
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 81.58
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 81.43
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 81.03
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 80.91
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 80.48
g1f2t.1 292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 80.45
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 80.38
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 80.31
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-38  Score=331.84  Aligned_cols=213  Identities=23%  Similarity=0.327  Sum_probs=187.2

Q ss_pred             ccccc-ccceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHH
Q psy11009         65 PSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLY  143 (863)
Q Consensus        65 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~  143 (863)
                      |..|. +-++...|+|+|         |+||||||++|+++|+.    +..|.++.+.+++       .+.|+|++++++
T Consensus        34 ~~~~~~~g~~~~~~iLL~---------GppGtGKT~la~~iA~~----~~~~~~~i~~~~l-------~~~~~g~~~~~l   93 (256)
T d1lv7a_          34 PSRFQKLGGKIPKGVLMV---------GPPGTGKTLLAKAIAGE----AKVPFFTISGSDF-------VEMFVGVGASRV   93 (256)
T ss_dssp             GGGC-----CCCCEEEEE---------CCTTSCHHHHHHHHHHH----HTCCEEEECSCSS-------TTSCCCCCHHHH
T ss_pred             HHHHHHcCCCCCCeEEee---------CCCCCCccHHHHHHHHH----cCCCEEEEEhHHh-------hhcchhHHHHHH
Confidence            44444 455666899999         99999999999999996    6667766666665       788999999999


Q ss_pred             HHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCcc
Q psy11009        144 RSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDID  217 (863)
Q Consensus       144 r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD  217 (863)
                      +.+|+.+        ....||||||||+|+++..|++      ....+++++||.+||++.... +|+||||||+||.||
T Consensus        94 ~~~f~~A--------~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~-~v~vIatTn~~~~ld  164 (256)
T d1lv7a_          94 RDMFEQA--------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE-GIIVIAATNRPDVLD  164 (256)
T ss_dssp             HHHHHHH--------HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS-CEEEEEEESCTTTSC
T ss_pred             HHHHHHH--------HHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCC-CEEEEEeCCCcccCC
Confidence            9999875        6789999999999999998844      345678999999999987654 899999999999999


Q ss_pred             HHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhh
Q psy11009        218 EALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQ  295 (863)
Q Consensus       218 ~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~  295 (863)
                      +|++|  |||++|+|++|+.++|.+||+.++.+.++..++++..||+.|+|||||||+++|++|++.++|+.        
T Consensus       165 ~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~--------  236 (256)
T d1lv7a_         165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------  236 (256)
T ss_dssp             GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred             HhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence            99999  99999999999999999999999999999899999999999999999999999999999999876        


Q ss_pred             hccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009        296 IRQIPKEELDLPVSQRDFEEALARCNKS  323 (863)
Q Consensus       296 ~~~~~~~~~~~~Vt~~Df~~AL~~v~ps  323 (863)
                               ...|+++||..|++++..+
T Consensus       237 ---------~~~i~~~d~~~Al~rv~~g  255 (256)
T d1lv7a_         237 ---------KRVVSMVEFEKAKDKIMMG  255 (256)
T ss_dssp             ---------CSSBCHHHHHHHHHHHTTC
T ss_pred             ---------CCccCHHHHHHHHHHHhcC
Confidence                     5579999999999998765
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure