Psyllid ID: psy11010

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MCVFQVVSYGRHTREELVVRLVAEMSRVKTSGAGHRGHSSGSGQHVAHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRNINLDKWYAV
Secondary Structure (PSIPRED)
cEEEEEEEEccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHccccccccHEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHccEEEEEEEccccccccccccccEEEc
Coil and Loop (DISEMBL)
MCVFQVVSYGRHTREELVVRLVAEMSRvktsgaghrghssgsgqhvahhcrkksresRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLvgilthrvgyslpmFTGFVIMFLSTLIFAFGRTYGVLFLARSlqgigsscssvsgmgmlaerypddrergnAMGIALGGLALgvligppfggimyqfvgkTAPFLILSALAlgdgckcnytivqkssshdrninldkwyav
Flexible Loop (DISEMBL)
mcvfqvvsygrhtreeLVVRLVAEMSRVKTsgaghrghssgsgqhvahhcrkksresrrLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTivqkssshdrninldkwyav
Low Complexity Region (SEG)
MCVFQVVSYGRHTREELVVRLVAEMSRVKTsgaghrghssgsgqhVAHHCRKKSRESRRlvlvivaialvlDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARslqgigsscssvsgmgMLAERYPDDRERGNAMgialgglalgvligPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRNINLDKWYAV
Disordered region (IsUnstruct)
*CVFQVVSYGRHTREELVVRLVAE**********************************RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML**********GNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQK*********L**W***
Disordered Region (DISOPRED)
MCVFQV*SYGR************************************************LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYT*************LDKWYAV
Disordered Region (DISEMBL)
MCVFQVVSYGRHTREELVVRLVAEMSRV***************************ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRNINLDKWYAV
Disordered Region (DISPRO)
MCVFQVVSYGRHTREELVVRLVAEMSRVKT****************AHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRNINLDKWYAV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCVFQVVSYGRHTREELVVRLVAEMSRVKTSGAGHRGHSSGSGQHVAHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRNINLDKWYAV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q27963	517	Synaptic vesicular amine	yes	N/A	0.570	0.282	0.684	8e-52
Q8BRU6	517	Synaptic vesicular amine	yes	N/A	0.582	0.288	0.649	4e-50
Q01827	515	Synaptic vesicular amine	yes	N/A	0.593	0.295	0.636	1e-49
Q05940	514	Synaptic vesicular amine	yes	N/A	0.789	0.392	0.502	3e-49
Q08C75	513	Probable vesicular acetyl	no	N/A	0.851	0.424	0.387	2e-44
P81721	515	Vesicular acetylcholine t	N/A	N/A	0.699	0.347	0.412	1e-41
Q91498	511	Vesicular acetylcholine t	N/A	N/A	0.699	0.350	0.407	2e-41
Q91514	511	Vesicular acetylcholine t	N/A	N/A	0.675	0.338	0.414	9e-41
O17444	578	Vesicular acetylcholine t	no	N/A	0.671	0.297	0.439	1e-40
P59845	493	Probable vesicular acetyl	no	N/A	0.851	0.442	0.412	1e-38

>sp|Q27963|VMAT2_BOVIN Synaptic vesicular amine transporter OS=Bos taurus GN=SLC18A2 PE=1 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 121/146 (82%)

Query: 85  ENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA 144
            +  K L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMFTGF IMF+ST++FA
Sbjct: 121 PSEDKDLLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFTGFCIMFISTVMFA 180

Query: 145 FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP 204
           F RTY  L +ARSLQGIGSSCSSV+GMGMLA  Y DD ERGNAMGIALGGLA+GVL+GPP
Sbjct: 181 FSRTYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVLVGPP 240

Query: 205 FGGIMYQFVGKTAPFLILSALALGDG 230
           FG ++Y+FVGKTAPFL+L+AL L DG
Sbjct: 241 FGSVLYEFVGKTAPFLVLAALVLLDG 266

Involved in the ATP-dependent vesicular transport of biogenic amine neurotransmitters. Pumps cytosolic monoamines including dopamine, norepinephrine, serotonin, and histamine into synaptic vesicles. Requisite for vesicular amine storage prior to secretion via exocytosis.
Bos taurus (taxid: 9913)

>sp|Q8BRU6|VMAT2_MOUSE Synaptic vesicular amine transporter OS=Mus musculus GN=Slc18a2 PE=1 SV=1

 Score =  197 bits (502), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/151 (64%), Positives = 121/151 (80%), Gaps = 2/151 (1%)

Query: 80  EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS 139
            D   E++   L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMF GF IMF+S
Sbjct: 118 PDCPSEDKD--LLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCIMFIS 175

Query: 140 TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV 199
           T++FAF  +Y  L +ARSLQGIGSSCSSV+GMGMLA  Y DD ERGNAMGIALGGLA+GV
Sbjct: 176 TVMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGV 235

Query: 200 LIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           L+GPPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct: 236 LVGPPFGSVLYEFVGKTAPFLVLAALVLLDG 266

Involved in the ATP-dependent vesicular transport of biogenic amine neurotransmitters. Pumps cytosolic monoamines including dopamine, norepinephrine, serotonin, and histamine into synaptic vesicles. Requisite for vesicular amine storage prior to secretion via exocytosis.

Mus musculus (taxid: 10090)

>sp|Q01827|VMAT2_RAT Synaptic vesicular amine transporter OS=Rattus norvegicus GN=Slc18a2 PE=1 SV=2

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 120/154 (77%), Gaps = 2/154 (1%)

Query: 77  TTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM 136
           T   D   E+R   L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMF GF IM
Sbjct: 113 TVPSDCPSEDRD--LLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCIM 170

Query: 137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLA 196
           F+ST++FAF  +Y  L +ARSLQGIGSSCSSV+GMGMLA  Y DD ERG  MGIALGGLA
Sbjct: 171 FISTVMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGKPMGIALGGLA 230

Query: 197 LGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           +GVL+GPPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct: 231 MGVLVGPPFGSVLYEFVGKTAPFLVLAALVLLDG 264

Involved in the ATP-dependent vesicular transport of biogenic amine neurotransmitters. Pumps cytosolic monoamines including dopamine, norepinephrine, serotonin, and histamine into synaptic vesicles. Requisite for vesicular amine storage prior to secretion via exocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q05940|VMAT2_HUMAN Synaptic vesicular amine transporter OS=Homo sapiens GN=SLC18A2 PE=1 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 140/209 (66%), Gaps = 7/209 (3%)

Query: 26  SRVKTSGAGHRGHSSGSGQHVAHHCRKKS----RESRRLVLVIVAIALVLDNMLLTTVED 81
           + ++T+   H    S S Q +  +    +      +R L L   A   ++ N       D
Sbjct: 58  TEIQTARPVHTASISDSFQSIFSYYDNSTMVTGNATRDLTLHQTATQHMVTNAS-AVPSD 116

Query: 82  VARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL 141
              E++   L+ E   VG++F SKA VQL+ NP +G+LT+R+GY +P+F GF IMF+ST+
Sbjct: 117 CPSEDKD--LLNENVQVGLLFASKATVQLITNPFIGLLTNRIGYPIPIFAGFCIMFVSTI 174

Query: 142 IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLI 201
           +FAF  +Y  L +ARSLQGIGSSCSSV+GMGMLA  Y DD ERGN MGIALGGLA+GVL+
Sbjct: 175 MFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNVMGIALGGLAMGVLV 234

Query: 202 GPPFGGIMYQFVGKTAPFLILSALALGDG 230
           GPPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct: 235 GPPFGSVLYEFVGKTAPFLVLAALVLLDG 263

Involved in the ATP-dependent vesicular transport of biogenic amine neurotransmitters. Pumps cytosolic monoamines including dopamine, norepinephrine, serotonin, and histamine into synaptic vesicles. Requisite for vesicular amine storage prior to secretion via exocytosis.

Homo sapiens (taxid: 9606)

>sp|Q08C75|VACHA_DANRE Probable vesicular acetylcholine transporter-A OS=Danio rerio GN=slc18a3a PE=2 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 27/245 (11%)

Query: 22  VAEMSRVKTSGAGHRGHSSGSGQHVAHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVED 81
           +A+ + VK S  G R    G+         +     RR++LVIV +AL+LDNML   +  
Sbjct: 9   LAQTAAVKLSEMGERTKQLGNA-------IQDPERQRRIILVIVCVALLLDNMLYMVIVP 61

Query: 82  VA--------RENRHKYLMGETK-----------AVGVMFGSKAFVQLLANPLVGILTHR 122
           +          E+   ++ G +             +GV+F SKA +QLL NPL G    R
Sbjct: 62  IVPDYLAHLESESEQAHVKGNSSINITQNENFDLQIGVLFASKAILQLLVNPLTGTFIDR 121

Query: 123 VGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDR 182
           VGY +P+  G  IMF+ST IFAF   Y  LF+ARSLQG+GS+ +  SG+ M+A++Y ++ 
Sbjct: 122 VGYDIPLLIGLSIMFVSTCIFAFAENYATLFMARSLQGLGSAFADTSGIAMIADKYAEES 181

Query: 183 ERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSS 242
           ER  A+GIAL  ++ G L  PPFGG++Y+F GK  PF+ L+ + L DG  C  T+++  S
Sbjct: 182 ERSRALGIALAFISFGSLAAPPFGGVLYEFAGKRFPFIALACVCLADGILC-LTVLKPFS 240

Query: 243 SHDRN 247
           S  R 
Sbjct: 241 SRTRE 245

Involved in acetylcholine transport into synaptic vesicles.

Danio rerio (taxid: 7955)

>sp|P81721|VACHT_TORCA Vesicular acetylcholine transporter OS=Torpedo californica PE=2 SV=2

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 122/211 (57%), Gaps = 32/211 (15%)

Query: 52  KKSRESRRLVLVIVAIALVLDNMLLTTVEDVA-------RENRHKYLM------------ 92
            + R  R+++LVIV IA++LDNML   +  +        R  +  Y+             
Sbjct: 33  NEPRRKRKILLVIVCIAMLLDNMLYMVIVPIIPNYLETIRTYKLVYITTPSNGTNGSLLN 92

Query: 93  -------------GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS 139
                         E   +GV+F SKA +QLL+NP  G    RVGY +P+  G  IMF S
Sbjct: 93  STQRAVLERNPNANEDIQIGVLFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFS 152

Query: 140 TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV 199
           T+ FAFG +Y VLF ARSLQG+GS+ +  SG+ M+A++Y ++ ER  A+GIAL  ++ G 
Sbjct: 153 TITFAFGESYAVLFAARSLQGLGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGS 212

Query: 200 LIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           L+ PPFGG++YQF GK  PFL+LS + L DG
Sbjct: 213 LVAPPFGGVLYQFAGKWVPFLVLSFVCLLDG 243

Involved in acetylcholine transport into synaptic vesicles.

Torpedo californica (taxid: 7787)

>sp|Q91498|VACHT_TORMA Vesicular acetylcholine transporter OS=Torpedo marmorata PE=2 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 122/211 (57%), Gaps = 32/211 (15%)

Query: 52  KKSRESRRLVLVIVAIALVLDNMLLTTVEDVA-------RENRHKYLM------------ 92
            + R  R+++LVIV IA++LDNML   +  +        R  +  Y+             
Sbjct: 29  NEPRRKRKILLVIVCIAMLLDNMLYMVIVPIIPNYLETIRTYKLVYITTPSNGTNGSLLN 88

Query: 93  -------------GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS 139
                         E   +GV+F SKA +QLL+NP  G    RVGY +P+  G  IMF S
Sbjct: 89  STQRAVLERNPNANEDIQIGVLFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFS 148

Query: 140 TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV 199
           T+ FAFG +Y +LF ARSLQG+GS+ +  SG+ M+A++Y ++ ER  A+GIAL  ++ G 
Sbjct: 149 TITFAFGESYAILFAARSLQGLGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGS 208

Query: 200 LIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           L+ PPFGG++YQF GK  PFL+LS + L DG
Sbjct: 209 LVAPPFGGVLYQFAGKWVPFLVLSFVCLLDG 239

Involved in acetylcholine transport into synaptic vesicles.

Torpedo marmorata (taxid: 7788)

>sp|Q91514|VACHT_TORTO Vesicular acetylcholine transporter OS=Torpedo torpedo PE=2 SV=1

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 120/205 (58%), Gaps = 32/205 (15%)

Query: 58  RRLVLVIVAIALVLDNMLLTTVEDVA-------RENRHKYLM------------------ 92
           R+++LVIV IA++LDNML   +  +        R  +  Y+                   
Sbjct: 35  RKILLVIVCIAMLLDNMLYMVIVPIVPNYLETIRTYKLVYITIPSNGTNGSLLNSTQRAV 94

Query: 93  -------GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF 145
                   E   +GV+F SKA +QLL+NP  G    RVGY +P+  G  IMF ST+ FAF
Sbjct: 95  LERNPNANEDIQIGVLFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFSTITFAF 154

Query: 146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPF 205
           G +Y +LF ARSLQG+GS+ +  SG+ M+A++Y ++ ER  A+GIAL  ++ G L+ PPF
Sbjct: 155 GESYAILFAARSLQGLGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPF 214

Query: 206 GGIMYQFVGKTAPFLILSALALGDG 230
           GG++YQF GK  PFL+LS + L DG
Sbjct: 215 GGVLYQFAGKWVPFLVLSFVCLLDG 239

Involved in acetylcholine transport into synaptic vesicles.

Torpedo torpedo (taxid: 30481)

>sp|O17444|VACHT_DROME Vesicular acetylcholine transporter OS=Drosophila melanogaster GN=VAChT PE=2 SV=2

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 117/198 (59%), Gaps = 26/198 (13%)

Query: 52  KKSRESRRLVLVIVAIALVLDNML----LTTVEDVARE---------------------- 85
           ++    RRL+LVIV+IAL+LDNML    +  + D  RE                      
Sbjct: 25  QEPVNQRRLILVIVSIALLLDNMLYMVIVPIIPDYLREIGSFDDGPTPPPLRDNITGKII 84

Query: 86  NRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF 145
             H    G+  A G++F SKA VQL+ NP  G L  ++GY LPM  G  IMF ST +FA 
Sbjct: 85  PVHHDHHGQDSATGILFASKAIVQLMVNPFSGGLIDKIGYDLPMMIGLTIMFFSTAVFAC 144

Query: 146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPF 205
           G +Y VLF ARSLQG GS+ +  +G+ M+A+R+ ++ ER  A+GIAL  ++ G L+ PPF
Sbjct: 145 GSSYSVLFFARSLQGAGSAFADTAGLAMIADRFTEENERSQALGIALAFISFGCLVAPPF 204

Query: 206 GGIMYQFVGKTAPFLILS 223
           GG +YQF GK  PFLIL+
Sbjct: 205 GGALYQFAGKEVPFLILA 222

Involved in acetylcholine transport into synaptic vesicles.

Drosophila melanogaster (taxid: 7227)

>sp|P59845|VACHB_DANRE Probable vesicular acetylcholine transporter-B OS=Danio rerio GN=slc18a3b PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/233 (41%), Positives = 137/233 (58%), Gaps = 15/233 (6%)

Query: 22  VAEMSRVKTSGAGHRGHSSGSGQHVAHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVED 81
           +A+ + ++ S  G R    G         R+  R+ RRL+LV+V +AL+LDNML   +  
Sbjct: 9   LAQSAVLQLSAMGERSRELGGA------LREPERK-RRLLLVVVCVALLLDNMLYMVIVP 61

Query: 82  VA-------RENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV 134
           +        R  R          +GV+F SKA +QLL NPL G    RVGY LP+  G +
Sbjct: 62  IIPDYLADLRGERGNSSADLDIQIGVLFASKALLQLLVNPLSGTFIDRVGYDLPLLIGLL 121

Query: 135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGG 194
           +MFLST IFAF   YG LF ARSLQG+GS+ +  SG+ M+A+++ ++ ER  A+GIAL  
Sbjct: 122 VMFLSTCIFAFAENYGTLFAARSLQGLGSAFADTSGIAMIADKFTEEAERSRALGIALAF 181

Query: 195 LALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRN 247
           ++ G L+ PPFGGI+Y+F GK  PF++L+ + L DG     T+V+  S   R 
Sbjct: 182 ISFGSLVAPPFGGILYEFAGKRVPFIVLACVCLADGVLL-LTVVKPFSDRTRE 233

Involved in acetylcholine transport into synaptic vesicles.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
347971984	512	AGAP004476-PA [Anopheles gambiae str. PE	0.789	0.394	0.583	1e-70
328709288	478	PREDICTED: synaptic vesicular amine tran	0.675	0.361	0.630	7e-69
307198448	517	Chromaffin granule amine transporter [Ha	0.644	0.319	0.787	1e-68
307184508	513	Synaptic vesicular amine transporter [Ca	0.605	0.302	0.812	1e-68
383860874	521	PREDICTED: synaptic vesicular amine tran	0.589	0.289	0.821	4e-68
332028802	504	Synaptic vesicular amine transporter [Ac	0.609	0.309	0.797	5e-68
157119801	438	vesicular monoamine transporter, putativ	0.628	0.367	0.777	6e-68
345482461	505	PREDICTED: synaptic vesicular amine tran	0.601	0.304	0.818	1e-67
170043165	524	vesicular monoamine transporter [Culex q	0.574	0.280	0.850	4e-67
350403795	524	PREDICTED: synaptic vesicular amine tran	0.597	0.291	0.797	1e-66

>gi|347971984|ref|XP_313775.4| AGAP004476-PA [Anopheles gambiae str. PEST] gi|333469117|gb|EAA09208.4| AGAP004476-PA [Anopheles gambiae str. PEST]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/259 (58%), Positives = 169/259 (65%), Gaps = 57/259 (22%)

Query: 29  KTSGAGHRGHSSGSGQHVAHHCRKKS-----RESRRLVLVIVAIALVLDNMLLTTVEDV- 82
            +S  GH   SS            K+     R SR+LVLVIVAIAL+LDNMLLT V  + 
Sbjct: 16  SSSSTGHNHSSSPKLPPPGSWASLKANVIRWRGSRKLVLVIVAIALLLDNMLLTVVVPII 75

Query: 83  ---------------------------------------------------ARENRHKYL 91
                                                               RE RHK L
Sbjct: 76  PEFLYDIRHPDAPLASFPKTPPTTPCEKEVTTPYNGIDVTTQGYDNASWYAEREERHKEL 135

Query: 92  MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV 151
           + ET  VG+MF SKAFVQLLANP+VG LTH++GYS+PMF GFVIMF+STLIFAFGRTY V
Sbjct: 136 VEETVEVGLMFASKAFVQLLANPIVGPLTHKIGYSIPMFAGFVIMFISTLIFAFGRTYSV 195

Query: 152 LFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ 211
           LFLAR+LQGIGSSCSSVSGMGMLA+RY DD+ERGNAMGIALGGLALGVLIGPPFGGIMY+
Sbjct: 196 LFLARALQGIGSSCSSVSGMGMLADRYTDDKERGNAMGIALGGLALGVLIGPPFGGIMYE 255

Query: 212 FVGKTAPFLILSALALGDG 230
           FVGK+APFL+LSALALGDG
Sbjct: 256 FVGKSAPFLVLSALALGDG 274

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709288|ref|XP_003243921.1| PREDICTED: synaptic vesicular amine transporter-like isoform 2 [Acyrthosiphon pisum] gi|328709290|ref|XP_001945866.2| PREDICTED: synaptic vesicular amine transporter-like isoform 1 [Acyrthosiphon pisum]

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 140/222 (63%), Positives = 159/222 (71%), Gaps = 49/222 (22%)

Query: 52  KKSRESRRLVLVIVAIALVLDNMLLTTV-------------------------------- 79
           K+ RESR+LV+VIVAIAL+LDNMLLTTV                                
Sbjct: 13  KRCRESRQLVVVIVAIALLLDNMLLTTVVPIIPEFLYDIQHPDQPLTATFSSIPPNEYPV 72

Query: 80  -----------------EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR 122
                            E   ++ RH  L+ ET AVG+MF SKA VQL+ NP+VG LTHR
Sbjct: 73  PHGAMTANGTVPTWEQREATLKKERHDDLVHETVAVGMMFASKAVVQLMVNPIVGPLTHR 132

Query: 123 VGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDR 182
           +GYS+PMFTGF IMF+ST+IFAFGR+YGVLFLAR+LQGIGSSCS+VSGMGMLAERYPDD+
Sbjct: 133 IGYSIPMFTGFFIMFISTIIFAFGRSYGVLFLARALQGIGSSCSTVSGMGMLAERYPDDK 192

Query: 183 ERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSA 224
           ERGNAMGIALGGLALGVLIGPPFGGIMY+FVGKTAPFLILSA
Sbjct: 193 ERGNAMGIALGGLALGVLIGPPFGGIMYEFVGKTAPFLILSA 234

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198448|gb|EFN79390.1| Chromaffin granule amine transporter [Harpegnathos saltator]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 146/165 (88%)

Query: 66  AIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGY 125
           AI L      LT  E   +E RH+ L+ ET AVG+MF SKAFVQLLANP+VG LTH++GY
Sbjct: 115 AIDLETTTANLTLSEIKKKEQRHRELLEETVAVGMMFASKAFVQLLANPIVGPLTHKIGY 174

Query: 126 SLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERG 185
           S+PMFTGF+IMFLSTLIFAFGR+YG+LFLAR+LQGIGSSCSSVSGMGMLAERY DD+ERG
Sbjct: 175 SIPMFTGFIIMFLSTLIFAFGRSYGILFLARALQGIGSSCSSVSGMGMLAERYQDDKERG 234

Query: 186 NAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           NAMGIALGGLALGVLIGPPFGG+MYQFVGK+APFL+LSALALGDG
Sbjct: 235 NAMGIALGGLALGVLIGPPFGGVMYQFVGKSAPFLVLSALALGDG 279

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184508|gb|EFN70897.1| Synaptic vesicular amine transporter [Camponotus floridanus]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 144/155 (92%)

Query: 76  LTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI 135
           LT+ E   +E RH+ L+ ET AVG+MF SKAFVQLLANP+VG LTH++GYS+PMFTGF+I
Sbjct: 121 LTSPEMKEKEQRHRELLEETVAVGMMFASKAFVQLLANPIVGPLTHKIGYSIPMFTGFII 180

Query: 136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGL 195
           MFLSTLIFAFGR+YG+LFLAR+LQGIGSSCSSVSGMGMLAERY DD+ERGNAMGIALGGL
Sbjct: 181 MFLSTLIFAFGRSYGILFLARALQGIGSSCSSVSGMGMLAERYQDDKERGNAMGIALGGL 240

Query: 196 ALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           ALGVLIGPPFGG+MY+FVGK+APFL+LSALALGDG
Sbjct: 241 ALGVLIGPPFGGVMYEFVGKSAPFLVLSALALGDG 275

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860874|ref|XP_003705913.1| PREDICTED: synaptic vesicular amine transporter-like [Megachile rotundata]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 141/151 (93%)

Query: 80  EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS 139
           E   +E RH+ L+ ET AVG+MF SKAFVQLLANP+VG LTH++GYS+PMFTGFVIMFLS
Sbjct: 133 EKEEKEQRHRELLEETVAVGIMFASKAFVQLLANPIVGPLTHKIGYSIPMFTGFVIMFLS 192

Query: 140 TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV 199
           TLIFAFGR+YG+LFLAR+LQGIGSSCSSVSGMGMLAER+ DD+ERGNAMGIALGGLALGV
Sbjct: 193 TLIFAFGRSYGILFLARALQGIGSSCSSVSGMGMLAERFQDDKERGNAMGIALGGLALGV 252

Query: 200 LIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           LIGPPFGG+MY+FVGK+APFL+LSALALGDG
Sbjct: 253 LIGPPFGGVMYEFVGKSAPFLVLSALALGDG 283

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028802|gb|EGI68831.1| Synaptic vesicular amine transporter [Acromyrmex echinatior]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 126/158 (79%), Positives = 147/158 (93%), Gaps = 2/158 (1%)

Query: 73  NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTG 132
           N+ L+ +++  +E RH+ L+ ET AVG+MF SKAFVQLLANP+VG LTH++GYS+PMFTG
Sbjct: 111 NLTLSDMKE--KEQRHRELLEETVAVGMMFASKAFVQLLANPIVGPLTHKIGYSIPMFTG 168

Query: 133 FVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIAL 192
           F+IMFLSTLIFAFGR+YG+LFLAR+LQGIGSSCSSVSGMGMLAERY DD+ERGNAMGIAL
Sbjct: 169 FIIMFLSTLIFAFGRSYGILFLARALQGIGSSCSSVSGMGMLAERYQDDKERGNAMGIAL 228

Query: 193 GGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           GGLALGVLIGPPFGG+MY+FVGK+APFLILSALALGDG
Sbjct: 229 GGLALGVLIGPPFGGVMYEFVGKSAPFLILSALALGDG 266

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119801|ref|XP_001659513.1| vesicular monoamine transporter, putative [Aedes aegypti] gi|108875166|gb|EAT39391.1| AAEL008816-PA, partial [Aedes aegypti]

 Score =  263 bits (672), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 146/166 (87%), Gaps = 5/166 (3%)

Query: 70  VLDNMLLTTVEDVA-----RENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG 124
           V+ N++   + D A     RE RHK L+ ET  VG+MF SKAFVQLLANP+VG LTH++G
Sbjct: 48  VVSNIIQNHITDNASWHAEREERHKELVEETVEVGLMFASKAFVQLLANPIVGPLTHKIG 107

Query: 125 YSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER 184
           YS+PMFTGFVIMF+STLIFAFGRTY VLFLAR+LQGIGSSCSSVSGMGMLA+RY DD+ER
Sbjct: 108 YSIPMFTGFVIMFISTLIFAFGRTYPVLFLARALQGIGSSCSSVSGMGMLADRYTDDKER 167

Query: 185 GNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           GNAMGIALGGLALGVLIGPPFGGIMY+FVGK+APFL+LSALALGDG
Sbjct: 168 GNAMGIALGGLALGVLIGPPFGGIMYEFVGKSAPFLVLSALALGDG 213

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482461|ref|XP_001608139.2| PREDICTED: synaptic vesicular amine transporter-like [Nasonia vitripennis]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/154 (81%), Positives = 141/154 (91%)

Query: 77  TTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM 136
           T  E +  + RHK L  ET AVG+MF SKAFVQLLANP+VG LTH++GYS+PMFTGF+IM
Sbjct: 113 TAAEILENKQRHKDLTEETVAVGMMFASKAFVQLLANPVVGPLTHKIGYSIPMFTGFIIM 172

Query: 137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLA 196
           FLSTLIFAFGR+YG+LFLAR+LQGIGSSCSSVSGMGMLAERY DD+ERGNAMGIALGGLA
Sbjct: 173 FLSTLIFAFGRSYGILFLARALQGIGSSCSSVSGMGMLAERYQDDKERGNAMGIALGGLA 232

Query: 197 LGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           LGVLIGPPFGG+MY+FVGK+APFLILSALALGDG
Sbjct: 233 LGVLIGPPFGGLMYEFVGKSAPFLILSALALGDG 266

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043165|ref|XP_001849269.1| vesicular monoamine transporter [Culex quinquefasciatus] gi|167866583|gb|EDS29966.1| vesicular monoamine transporter [Culex quinquefasciatus]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/147 (85%), Positives = 137/147 (93%)

Query: 84  RENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF 143
           RE RHK L+ ET  VG+MF SKAFVQLLANP+VG LTH++GYS+PMF GFVIMF+STLIF
Sbjct: 100 REERHKELVEETVEVGLMFASKAFVQLLANPIVGPLTHKIGYSIPMFAGFVIMFISTLIF 159

Query: 144 AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGP 203
           AFGRTY VLFLAR+LQGIGSSCSSVSGMGMLA+RY DD+ERGNAMGIALGGLALGVLIGP
Sbjct: 160 AFGRTYSVLFLARALQGIGSSCSSVSGMGMLADRYTDDKERGNAMGIALGGLALGVLIGP 219

Query: 204 PFGGIMYQFVGKTAPFLILSALALGDG 230
           PFGGIMY+FVGK+APFLILSALALGDG
Sbjct: 220 PFGGIMYEFVGKSAPFLILSALALGDG 246

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403795|ref|XP_003486906.1| PREDICTED: synaptic vesicular amine transporter-like [Bombus impatiens]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/153 (79%), Positives = 140/153 (91%)

Query: 78  TVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF 137
           T +   +  RH+ L+ ET AVG+MF SKAFVQLLANP+VG LTH++GYS+PMFTGF+IMF
Sbjct: 134 TEDPDEKAQRHRELLQETTAVGLMFASKAFVQLLANPIVGPLTHKIGYSIPMFTGFIIMF 193

Query: 138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL 197
           LSTLIFAFGR+YG+LFLAR+LQGIGSSCSSVSGMGMLAERY DD+ERGNAMGIALGGLAL
Sbjct: 194 LSTLIFAFGRSYGILFLARALQGIGSSCSSVSGMGMLAERYQDDKERGNAMGIALGGLAL 253

Query: 198 GVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
           GVLIGPPFGG MY++VGK+APFL+LSALALGDG
Sbjct: 254 GVLIGPPFGGAMYEYVGKSAPFLVLSALALGDG 286

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
FB|FBgn0260964	646	Vmat "Vesicular monoamine tran	0.570	0.226	0.609	4.7e-46
WB|WBGene00000295	553	cat-1 [Caenorhabditis elegans	0.625	0.289	0.472	5.3e-38
UNIPROTKB|Q27963	517	SLC18A2 "Synaptic vesicular am	0.554	0.274	0.514	1.9e-37
UNIPROTKB|B0JYP2	517	SLC18A2 "Solute carrier family	0.554	0.274	0.507	5.1e-37
UNIPROTKB|I3L5W2	517	SLC18A2 "Uncharacterized prote	0.578	0.286	0.486	3.5e-36
UNIPROTKB|F1PD81	518	SLC18A2 "Uncharacterized prote	0.578	0.285	0.48	3.5e-36
MGI|MGI:106677	517	Slc18a2 "solute carrier family	0.593	0.294	0.483	5.7e-36
UNIPROTKB|F1P4R2	514	SLC18A2 "Uncharacterized prote	0.578	0.287	0.48	1.2e-35
UNIPROTKB|E1BWE7	522	SLC18A1 "Uncharacterized prote	0.554	0.272	0.507	3.3e-35
RGD|3694	515	Slc18a2 "solute carrier family	0.593	0.295	0.470	4.8e-35

FB|FBgn0260964 Vmat "Vesicular monoamine transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 457 (165.9 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 89/146 (60%), Positives = 105/146 (71%)

Query:    85 ENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA 144
             E RH  L+GET  VG++F SKAFVQLL NP+VG LTHR+GYS+PMF GFVIMFLST+IFA
Sbjct:   226 EERHNELVGETVEVGLLFASKAFVQLLVNPIVGPLTHRIGYSIPMFAGFVIMFLSTIIFA 285

Query:   145 FGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXXXXPP 204
             FGR+Y VLF+AR                MLA+R+ DD+ERGNAM              PP
Sbjct:   286 FGRSYLVLFVARALQGIGSSCSSVSGMGMLADRFTDDKERGNAMGIALGGLALGVLIGPP 345

Query:   205 FGGIMYQFVGKTAPFLILSALALGDG 230
             FGG+MY+FVGK+APFLIL+ALALGDG
Sbjct:   346 FGGVMYEFVGKSAPFLILAALALGDG 371

GO:0008021 "synaptic vesicle" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=ISS

GO:0008504 "monoamine transmembrane transporter activity" evidence=ISS;IDA

GO:0006836 "neurotransmitter transport" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015842 "synaptic vesicle amine transport" evidence=IDA

GO:0005430 "synaptic vesicle amine transmembrane transporter activity" evidence=IDA

GO:0015844 "monoamine transport" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0015872 "dopamine transport" evidence=IMP

GO:0051608 "histamine transport" evidence=IMP

WB|WBGene00000295 cat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 381 (139.2 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
 Identities = 76/161 (47%), Positives = 100/161 (62%)

Query:    79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL 138
             V  ++ E RHK L  E   VG+MFGSKA VQLL NP +G LT+R+GY++PMF GFVIMF 
Sbjct:   141 VRTISEEERHKLLASENVHVGLMFGSKALVQLLVNPWIGPLTNRIGYTMPMFGGFVIMFC 200

Query:   139 STLIFAFGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXX 198
             ST++FAFG +Y  L+LAR                MLA+ YPDD ERG+AM          
Sbjct:   201 STILFAFGDSYFTLWLARALQGVGSACTSTSGMGMLAQAYPDDLERGSAMGIALGGLALG 260

Query:   199 XXXXPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQ 239
                 PP+GG++YQ+ GK  PF++L+ LAL DG    + ++Q
Sbjct:   261 VLVGPPYGGLLYQWSGKELPFVLLALLALFDG-SIQFMVLQ 300

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015844 "monoamine transport" evidence=IDA

GO:0007631 "feeding behavior" evidence=IMP

GO:0042416 "dopamine biosynthetic process" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008504 "monoamine transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q27963 SLC18A2 "Synaptic vesicular amine transporter" [Bos taurus (taxid:9913)]

 Score = 373 (136.4 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 73/142 (51%), Positives = 90/142 (63%)

Query:    89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT 148
             K L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMFTGF IMF+ST++FAF RT
Sbjct:   125 KDLLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFTGFCIMFISTVMFAFSRT 184

Query:   149 YGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXXXXPPFGGI 208
             Y  L +AR                MLA  Y DD ERGNAM              PPFG +
Sbjct:   185 YAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVLVGPPFGSV 244

Query:   209 MYQFVGKTAPFLILSALALGDG 230
             +Y+FVGKTAPFL+L+AL L DG
Sbjct:   245 LYEFVGKTAPFLVLAALVLLDG 266

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

UNIPROTKB|B0JYP2 SLC18A2 "Solute carrier family 18 (Vesicular monoamine), member 2" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 72/142 (50%), Positives = 90/142 (63%)

Query:    89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT 148
             K L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMFTGF IMF+ST++FAF R+
Sbjct:   125 KDLLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFTGFCIMFISTVMFAFSRS 184

Query:   149 YGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXXXXPPFGGI 208
             Y  L +AR                MLA  Y DD ERGNAM              PPFG +
Sbjct:   185 YAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVLVGPPFGSV 244

Query:   209 MYQFVGKTAPFLILSALALGDG 230
             +Y+FVGKTAPFL+L+AL L DG
Sbjct:   245 LYEFVGKTAPFLVLAALVLLDG 266

GO:0016265 "death" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

UNIPROTKB|I3L5W2 SLC18A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 366 (133.9 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 73/150 (48%), Positives = 93/150 (62%)

Query:    81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST 140
             D  +E+  K L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMF GF IMF+ST
Sbjct:   119 DCPKED--KDLLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCIMFIST 176

Query:   141 LIFAFGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXX 200
             ++FAF R+Y  L +AR                MLA  Y DD ERGNAM            
Sbjct:   177 IMFAFSRSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVL 236

Query:   201 XXPPFGGIMYQFVGKTAPFLILSALALGDG 230
               PPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct:   237 VGPPFGSVLYEFVGKTAPFLVLAALVLLDG 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PD81 SLC18A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 72/150 (48%), Positives = 92/150 (61%)

Query:    81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST 140
             D  RE+  K L+ E   VG++F SKA +QLL NP +G+LT+R+GY +PMF GF IMF+ST
Sbjct:   120 DCPRED--KALLNENVQVGLLFASKATIQLLTNPFIGLLTNRIGYPIPMFAGFCIMFVST 177

Query:   141 LIFAFGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXX 200
             ++FAF  +Y  L +AR                MLA  Y DD ERGNAM            
Sbjct:   178 IMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVL 237

Query:   201 XXPPFGGIMYQFVGKTAPFLILSALALGDG 230
               PPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct:   238 VGPPFGSVLYEFVGKTAPFLVLAALVLLDG 267

GO:0016021 "integral to membrane" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

MGI|MGI:106677 Slc18a2 "solute carrier family 18 (vesicular monoamine), member 2" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 75/155 (48%), Positives = 94/155 (60%)

Query:    77 TTVE-DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI 135
             TTV  D   E+  K L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMF GF I
Sbjct:   114 TTVPPDCPSED--KDLLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCI 171

Query:   136 MFLSTLIFAFGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXX 195
             MF+ST++FAF  +Y  L +AR                MLA  Y DD ERGNAM       
Sbjct:   172 MFISTVMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGL 231

Query:   196 XXXXXXXPPFGGIMYQFVGKTAPFLILSALALGDG 230
                    PPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct:   232 AMGVLVGPPFGSVLYEFVGKTAPFLVLAALVLLDG 266

GO:0001975 "response to amphetamine" evidence=IMP

GO:0005275 "amine transmembrane transporter activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=ISO

GO:0006837 "serotonin transport" evidence=ISO

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0007568 "aging" evidence=ISO

GO:0007626 "locomotory behavior" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008144 "drug binding" evidence=ISO

GO:0009636 "response to toxic substance" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0015222 "serotonin transmembrane transporter activity" evidence=ISO

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015842 "synaptic vesicle amine transport" evidence=ISO

GO:0015844 "monoamine transport" evidence=ISO

GO:0015893 "drug transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016265 "death" evidence=IMP

GO:0019899 "enzyme binding" evidence=ISO

GO:0030073 "insulin secretion" evidence=ISO

GO:0030672 "synaptic vesicle membrane" evidence=ISO

GO:0031045 "dense core granule" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0035690 "cellular response to drug" evidence=ISO

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0042995 "cell projection" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043195 "terminal bouton" evidence=ISO

GO:0043679 "axon terminus" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0051589 "negative regulation of neurotransmitter transport" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1P4R2 SLC18A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 72/150 (48%), Positives = 94/150 (62%)

Query:    81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST 140
             D  +E+  K L+ E   VG++F SKA VQL+ NP +G LT+R+GY +P+F GF IMF+ST
Sbjct:   115 DCPKED--KDLLNENVQVGLLFASKATVQLITNPFIGPLTNRIGYQIPLFAGFCIMFVST 172

Query:   141 LIFAFGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXX 200
             ++FAF  +Y +LF+AR                MLA  Y DD ERGNAM            
Sbjct:   173 IMFAFSGSYTLLFIARSLQGVGSSCSSVAGMGMLASVYTDDEERGNAMGIALGGLAMGVL 232

Query:   201 XXPPFGGIMYQFVGKTAPFLILSALALGDG 230
               PPFG IMY+FVGK++PFL+L+ALAL DG
Sbjct:   233 VGPPFGSIMYEFVGKSSPFLVLAALALFDG 262

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0016265 "death" evidence=IEA

UNIPROTKB|E1BWE7 SLC18A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 3.3e-35, Sum P(2) = 3.3e-35
 Identities = 72/142 (50%), Positives = 89/142 (62%)

Query:    89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT 148
             ++L  E   VG++F SKA VQLL NP VG+LT+R+GY +PMF GF+IMFLSTL+FAF  T
Sbjct:   127 EFLTQENMRVGLLFASKALVQLLVNPSVGLLTNRIGYHIPMFIGFIIMFLSTLMFAFSGT 186

Query:   149 YGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXXXXXXXXXPPFGGI 208
             Y +LF+AR                MLA  Y DD ERGNAM               PFG +
Sbjct:   187 YMLLFIARALQGVGSSFSSVAGLGMLASIYTDDFERGNAMGIALGGLALGVLIGAPFGSV 246

Query:   209 MYQFVGKTAPFLILSALALGDG 230
             MY+FVGK +PFL+L+ LAL DG
Sbjct:   247 MYEFVGKASPFLVLAFLALLDG 268

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|3694 Slc18a2 "solute carrier family 18 (vesicular monoamine), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 352 (129.0 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
 Identities = 73/155 (47%), Positives = 92/155 (59%)

Query:    77 TTV-EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI 135
             TTV  D   E+R   L+ E   VG++F SKA VQLL NP +G+LT+R+GY +PMF GF I
Sbjct:   112 TTVPSDCPSEDRD--LLNENVQVGLLFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCI 169

Query:   136 MFLSTLIFAFGRTYGVLFLARXXXXXXXXXXXXXXXXMLAERYPDDRERGNAMXXXXXXX 195
             MF+ST++FAF  +Y  L +AR                MLA  Y DD ERG  M       
Sbjct:   170 MFISTVMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDDEERGKPMGIALGGL 229

Query:   196 XXXXXXXPPFGGIMYQFVGKTAPFLILSALALGDG 230
                    PPFG ++Y+FVGKTAPFL+L+AL L DG
Sbjct:   230 AMGVLVGPPFGSVLYEFVGKTAPFLVLAALVLLDG 264

GO:0001975 "response to amphetamine" evidence=IEP;ISO

GO:0005275 "amine transmembrane transporter activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006836 "neurotransmitter transport" evidence=IDA

GO:0006837 "serotonin transport" evidence=IDA

GO:0007568 "aging" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008144 "drug binding" evidence=IPI

GO:0009635 "response to herbicide" evidence=IEP

GO:0009636 "response to toxic substance" evidence=ISO

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0010038 "response to metal ion" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0015222 "serotonin transmembrane transporter activity" evidence=IDA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015842 "synaptic vesicle amine transport" evidence=IMP;TAS

GO:0015844 "monoamine transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016265 "death" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=IPI

GO:0030073 "insulin secretion" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IDA

GO:0031045 "dense core granule" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0032456 "endocytic recycling" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IDA

GO:0042220 "response to cocaine" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042593 "glucose homeostasis" evidence=IDA

GO:0042594 "response to starvation" evidence=IEP

GO:0042995 "cell projection" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043195 "terminal bouton" evidence=IDA

GO:0043679 "axon terminus" evidence=IDA

GO:0044297 "cell body" evidence=IDA

GO:0051412 "response to corticosterone stimulus" evidence=IEP

GO:0051589 "negative regulation of neurotransmitter transport" evidence=IMP

GO:0071242 "cellular response to ammonium ion" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BRU6	VMAT2_MOUSE	No assigned EC number	0.6490	0.5820	0.2882	yes	N/A
Q05940	VMAT2_HUMAN	No assigned EC number	0.5023	0.7890	0.3929	yes	N/A
Q01827	VMAT2_RAT	No assigned EC number	0.6363	0.5937	0.2951	yes	N/A
Q27963	VMAT2_BOVIN	No assigned EC number	0.6849	0.5703	0.2823	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	256
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-36
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-19
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-18
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-12
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-11
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-06
COG0477	338	COG0477, ProP, Permeases of the major facilitator	5e-06
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	2e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-05
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	1e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-04
PRK11652	394	PRK11652, emrD, multidrug resistance protein D; Pr	3e-04
TIGR00892	455	TIGR00892, 2A0113, monocarboxylate transporter 1	3e-04
PRK14995	495	PRK14995, PRK14995, methyl viologen resistance pro	0.001
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.002
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	0.004

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score =  124 bits (313), Expect = 6e-36
 Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%)

Query: 99  GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 158
           G++    A  QL+ +PL G+LT R G    +  G  I  LST +FA      VL +AR L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 218
           QG G++ + V+G  ++A+ YP + ERG A+G+   G+ALG L+GPP GG++ QF+G  AP
Sbjct: 61  QGFGAAFALVAGAALIADIYPPE-ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119

Query: 219 FLILSALALGDG 230
           FL L+ LAL   
Sbjct: 120 FLFLAILALAAF 131

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
             G++  + +    L + L G L+ R G    +  G ++  L +L+ AF  +  +L + R
Sbjct: 35  QAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR 94

Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
            L G+G      +   ++AE +P  +ERG A+G+   G  LG L+GP  GG++ + +G  
Sbjct: 95  FLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153

Query: 217 APFLILSALAL 227
             FLIL+ L L
Sbjct: 154 WLFLILAILGL 164

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
            +G++  + +    LA PL G L+ R G    +  G ++  L  L+  F  +  +L + R
Sbjct: 33  EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92

Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
            LQG+G      +   ++A+ +P   ERG A+G+   G  LG  +GP  GG++    G  
Sbjct: 93  VLQGLGGGALFPAAAALIADWFP-PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWR 151

Query: 217 APFLILSALAL 227
           A FLIL+ LAL
Sbjct: 152 AAFLILAILAL 162

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 2/170 (1%)

Query: 59  RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGI 118
             +L+++A+A  L +     +         + L       G++        +L   L G+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 119 LTHRVG-YSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAER 177
           L+ R+G   L +  G ++  L  L+ A   +  +L +A  L G G   +  + + + +E 
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293

Query: 178 YPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
            P    RG A G+     +LG  +GP   G++    G    FLIL+ALAL
Sbjct: 294 APP-EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 95  TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 154
             A G +  + A    L  PL+ +LT R+     +     +  +S L+ A   ++ VL L
Sbjct: 47  EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLL 106

Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG 214
           AR+L G+           + A   P  + RG A+ +   GL L  ++G P G  + Q  G
Sbjct: 107 ARALAGLAHGVFWSIAAALAARLVPPGK-RGRALALVFTGLTLATVLGVPLGTFLGQLFG 165

Query: 215 KTAPFLILSALAL 227
             A FL ++ LAL
Sbjct: 166 WRATFLAIAVLAL 178

Length = 394

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 99  GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 158
           G +F + ++  ++     G L  R G    +    VI  + T + AF   Y  L++ R L
Sbjct: 32  GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91

Query: 159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 218
            G   +      + ++A  +P   ER  A+ I      LG +IG P  G +         
Sbjct: 92  LGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150

Query: 219 FLILSALAL 227
           F+I   L +
Sbjct: 151 FIIEGVLGI 159

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV--LFL 154
             G++  +      + + L G L  R G    +  G ++  L TL+ A     G+  L +
Sbjct: 40  LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI 99

Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFV 213
            R LQG+G          +L+E +P+  ERG A+G+  LG  ALG+ +GP   G++   +
Sbjct: 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159

Query: 214 GKTAPFLILSALALG 228
                   L A  LG
Sbjct: 160 LWGWRAAFLLAALLG 174

Length = 338

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 2/131 (1%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
           AV + F        ++ P+ G+L  + G       G ++  L    +A   +   L+L  
Sbjct: 39  AVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98

Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
            L   G   +    +    + +PD  +RG A GI +GG  LG  I  P    +    G  
Sbjct: 99  GLASAGVGIAYGIALNTAVKWFPD--KRGLASGIIIGGYGLGSFILSPLITSVINLEGVP 156

Query: 217 APFLILSALAL 227
           A F+ +  + L
Sbjct: 157 AAFIYMGIIFL 167

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF---GRTYGVLF 153
             G++ G    +  +   L+G L+ R+G    +    +++ L+ L  A      +   L 
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297

Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGP 203
           +A  L G G+     +   ++++  P   ERG A G+     +LG  +GP
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAP-KEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 95  TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 154
           T     +  +    +     + G+   R G  LPM T  V+    TL   F   Y  +F+
Sbjct: 46  TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105

Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG 214
           AR + GIG      S    + E +P    R  A G+ + G A+G +        +Y  V 
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHL-RNKASGLLISGYAVGAV----VAAQVYSLVV 160

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSC 165
           A  QLL     G L+ R G    +  G  I  LS+L  A       L + R +Q  G+S 
Sbjct: 54  AAGQLL----WGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASA 109

Query: 166 SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL 225
            SV    ++ + YP + E      I +  LAL   + P  GG +  ++   A F  LS  
Sbjct: 110 GSVISQALVRDIYPGE-ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168

Query: 226 AL 227
            +
Sbjct: 169 GI 170

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 117 GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE 176
           G L+ RVG    +  G  I  L TL+  F  +  VL  A ++QG+G+        G++A 
Sbjct: 64  GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG-----GVMAR 118

Query: 177 RYPDDRERGNAMGIALGGLALGVLIGP---PF-GGIMYQFVGKTAPFLILSALALG 228
             P D   G  +  A   L +G+L+ P   P  GG++    G  A +L L  L  G
Sbjct: 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG 174

Length = 394

>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 106 AFVQLLANPLVGIL--THRVGYSLPMFTGFVIMF--LSTLIFAFGRTYGVL-----FLAR 156
            FV + A P  G++     +   +     F ++F  L+ L+ A    Y  L     F   
Sbjct: 286 GFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGL 345

Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGG--------- 207
           S   +G+    V    + A+R+       +A+G+        VLIGPP  G         
Sbjct: 346 SFGSVGALLFEVLMDLVGAQRFS------SAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399

Query: 208 -IMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSS 243
             ++   G     ++ + L L  G   NY ++ K   
Sbjct: 400 KYIFYASGS---IVVSAGLFLAIGNYINYRLLAKEQK 433

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 455

>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 117 GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE 176
           G L  R+G+   +  G  +  L++L  AF  T   L   R+L  IG++    + +  +  
Sbjct: 62  GALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRA 121

Query: 177 RYPDDRERGNAMGI--ALGGLALGVLIGPPFGGIMYQFVGKTAPFLI 221
            + ++++R  A+G+  A+G    G   GP  GGI+ +     + FLI
Sbjct: 122 TFTEEKQRNMALGVWAAVGS--GGAAFGPLVGGILLEHFYWGSVFLI 166

Length = 495

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 4/135 (2%)

Query: 95  TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-RTYGVLF 153
            +A+G+         LL   L G+L   +G+        ++  L  L+  F  R   +L 
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181

Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV 213
           LA  L   G           L E            G+ L    LG ++G   GG++   +
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLS---AAEAGLLLSLFGLGGILGALLGGLLSDRL 238

Query: 214 GKTAPFLILSALALG 228
           G+    L++  L   
Sbjct: 239 GRRRLLLLIGLLLAA 253

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 114 PLVGILTHRVGYSLPMFTGFVIMF-LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMG 172
           PL G L  R G +  +F      F L +L+        ++ + R +QG G          
Sbjct: 55  PLTGWLAKRFG-TRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFS 113

Query: 173 MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
            L   YP ++ RG AM I      L VL+ P  G  +
Sbjct: 114 TLLNIYPPEK-RGRAMAI----WGLTVLVAPALGPTL 145

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 99  GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI-----FAFGRTYGVLF 153
           G++  S  + Q++    VG L  +  Y      G   MFLS++I     +A G    ++ 
Sbjct: 79  GLILSSHFYGQIIIQIPVGYLAGK--YVFKWSIGIG-MFLSSVISIVIPWAAGGGIALVV 135

Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
             R +QG+     S +   ++ +  P  +ER   +G++  G  LG  I  P  G +
Sbjct: 136 FCRVIQGLAQGSVSPATHKIIVKWAPP-KERSRLLGMSTSGFQLGTFIFLPISGWL 190

[Transport and binding proteins, Anions]. Length = 465

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK03545	390	putative arabinose transporter; Provisional	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
KOG1330|consensus	493		99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PRK05122	399	major facilitator superfamily transporter; Provisi	99.9
PRK12382	392	putative transporter; Provisional	99.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.9
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.9
PRK10504	471	putative transporter; Provisional	99.89
PRK10054	395	putative transporter; Provisional	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
PRK12307	426	putative sialic acid transporter; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
PRK03699	394	putative transporter; Provisional	99.89
PLN00028	476	nitrate transmembrane transporter; Provisional	99.89
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.89
KOG3764|consensus	464		99.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.88
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PRK03893	496	putative sialic acid transporter; Provisional	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
PRK11043	401	putative transporter; Provisional	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.87
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.87
PRK09874	408	drug efflux system protein MdtG; Provisional	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
PRK10642	490	proline/glycine betaine transporter; Provisional	99.87
PRK09952	438	shikimate transporter; Provisional	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.86
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.85
PRK15075	434	citrate-proton symporter; Provisional	99.85
PRK10133	438	L-fucose transporter; Provisional	99.85
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.85
PRK03633	381	putative MFS family transporter protein; Provision	99.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.84
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
PRK15011	393	sugar efflux transporter B; Provisional	99.83
PRK10489	417	enterobactin exporter EntS; Provisional	99.83
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.83
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.83
KOG2532|consensus	466		99.83
TIGR00805	633	oat sodium-independent organic anion transporter.	99.82
TIGR00898	505	2A0119 cation transport protein.	99.81
KOG2533|consensus	495		99.8
PTZ00207	591	hypothetical protein; Provisional	99.8
KOG0254|consensus	513		99.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
KOG2615|consensus	451		99.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.79
PRK15011	393	sugar efflux transporter B; Provisional	99.79
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.78
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.77
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.76
PRK09528	420	lacY galactoside permease; Reviewed	99.76
PRK10489	417	enterobactin exporter EntS; Provisional	99.76
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.75
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.75
KOG0255|consensus	521		99.75
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.75
PRK05122	399	major facilitator superfamily transporter; Provisi	99.75
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.75
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.75
PRK10642	490	proline/glycine betaine transporter; Provisional	99.75
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.75
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.75
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.74
PRK03699	394	putative transporter; Provisional	99.74
PRK11902	402	ampG muropeptide transporter; Reviewed	99.74
PRK11010	491	ampG muropeptide transporter; Validated	99.74
PRK09874	408	drug efflux system protein MdtG; Provisional	99.74
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.74
TIGR00893	399	2A0114 d-galactonate transporter.	99.74
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.74
PRK09528	420	lacY galactoside permease; Reviewed	99.73
PRK03545	390	putative arabinose transporter; Provisional	99.73
KOG2504|consensus	509		99.73
PRK12382	392	putative transporter; Provisional	99.73
PRK09705	393	cynX putative cyanate transporter; Provisional	99.73
TIGR00901	356	2A0125 AmpG-related permease.	99.72
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.72
PRK03633	381	putative MFS family transporter protein; Provision	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.72
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.71
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.7
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.7
TIGR00891	405	2A0112 putative sialic acid transporter.	99.69
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.68
PRK11663	434	regulatory protein UhpC; Provisional	99.68
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.68
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.67
PRK03893	496	putative sialic acid transporter; Provisional	99.67
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.67
PRK09952	438	shikimate transporter; Provisional	99.67
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.67
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.66
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.66
PRK10504	471	putative transporter; Provisional	99.66
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.66
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.65
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.64
PRK15075	434	citrate-proton symporter; Provisional	99.63
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.63
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.63
TIGR00900	365	2A0121 H+ Antiporter protein.	99.62
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.62
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.61
KOG0252|consensus	538		99.61
TIGR00895	398	2A0115 benzoate transport.	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
PRK12307	426	putative sialic acid transporter; Provisional	99.6
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.6
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.6
PRK11010	491	ampG muropeptide transporter; Validated	99.59
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.59
KOG2325|consensus	488		99.59
KOG0569|consensus	485		99.59
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.59
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.59
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.59
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.59
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.58
PRK10054	395	putative transporter; Provisional	99.58
PRK10091	382	MFS transport protein AraJ; Provisional	99.58
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.58
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.57
PLN00028	476	nitrate transmembrane transporter; Provisional	99.56
KOG0253|consensus	528		99.56
PRK11902	402	ampG muropeptide transporter; Reviewed	99.56
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.55
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.54
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.53
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.52
PRK09669	444	putative symporter YagG; Provisional	99.52
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.51
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.51
TIGR00898	505	2A0119 cation transport protein.	99.5
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.5
PRK10133	438	L-fucose transporter; Provisional	99.49
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.49
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.49
KOG0569|consensus	485		99.48
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.47
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.47
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.47
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.47
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.45
PRK09848	448	glucuronide transporter; Provisional	99.45
KOG2504|consensus	509		99.44
KOG4686|consensus	459		99.44
PF13347	428	MFS_2: MFS/sugar transport protein	99.41
PRK10429	473	melibiose:sodium symporter; Provisional	99.41
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.4
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.4
PF13347	428	MFS_2: MFS/sugar transport protein	99.4
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.4
PRK11462	460	putative transporter; Provisional	99.39
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.39
KOG0253|consensus	528		99.39
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.38
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.37
TIGR00901	356	2A0125 AmpG-related permease.	99.37
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.36
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.35
PRK11043	401	putative transporter; Provisional	99.33
PRK10429	473	melibiose:sodium symporter; Provisional	99.32
PRK09669	444	putative symporter YagG; Provisional	99.28
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.28
KOG3762|consensus	618		99.28
PRK09848	448	glucuronide transporter; Provisional	99.27
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.25
KOG2532|consensus	466		99.25
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.24
KOG3764|consensus	464		99.23
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.22
KOG2563|consensus	480		99.22
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.17
COG2211	467	MelB Na+/melibiose symporter and related transport	99.17
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.16
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.16
COG2211	467	MelB Na+/melibiose symporter and related transport	99.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.1
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.09
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.08
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.08
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.07
COG0477	338	ProP Permeases of the major facilitator superfamil	99.06
KOG2816|consensus	463		99.06
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.97
PRK11462	460	putative transporter; Provisional	98.96
KOG3626|consensus	735		98.96
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.91
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.89
KOG0254|consensus	513		98.87
KOG4686|consensus	459		98.84
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.82
KOG0252|consensus	538		98.81
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.72
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.71
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.65
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.62
KOG2615|consensus	451		98.62
KOG0637|consensus	498		98.61
KOG2533|consensus	495		98.61
PF12832	77	MFS_1_like: MFS_1 like family	98.59
KOG1237|consensus	571		98.58
PTZ00207	591	hypothetical protein; Provisional	98.57
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.56
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.52
KOG0255|consensus	521		98.43
KOG2816|consensus	463		98.39
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.36
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.29
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.23
PRK03612	521	spermidine synthase; Provisional	98.19
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.06
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.02
TIGR00805	633	oat sodium-independent organic anion transporter.	98.01
KOG2563|consensus	480		97.89
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.82
KOG2325|consensus	488		97.82
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.71
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.67
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.51
KOG4332|consensus	454		97.38
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.19
KOG3762|consensus	618		97.19
KOG3098|consensus	461		97.1
KOG3098|consensus	461		97.05
KOG3574|consensus	510		96.99
KOG1330|consensus	493		96.94
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.87
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.35
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.18
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.97
KOG3880|consensus	409		95.89
COG3202	509	ATP/ADP translocase [Energy production and convers	95.75
KOG0637|consensus	498		95.72
KOG3626|consensus	735		95.42
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.39
KOG1479|consensus	406		95.22
KOG3097|consensus	390		94.99
KOG4332|consensus	454		94.93
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.54
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.37
KOG3810|consensus	433		93.94
COG4262	508	Predicted spermidine synthase with an N-terminal m	93.64
KOG1479|consensus	406		93.64
KOG2601|consensus	503		93.47
KOG3810|consensus	433		92.74
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.29
KOG3880|consensus	409		92.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	89.09
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	88.2
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	87.97
PRK10263	1355	DNA translocase FtsK; Provisional	84.61
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	84.61
KOG3574|consensus	510		83.84
KOG1237|consensus	571		82.98
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	80.2

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.1e-25  Score=184.49  Aligned_cols=182  Identities=24%  Similarity=0.302  Sum_probs=173.6

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ++..+..++.+.++.|..+.......+++|+. .+|+|.+..+.|+..+.|.++..++.|+...+.||+.||++++....
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            34567778888899999899999998998886 79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      +++++.+++++++|++.++++|++.|+..|..++...++..+..|+ ++|++++++...+..++.++|.+++.++.+.+|
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP-GKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHhhheee
Q psy11010        215 KTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      ||++|++.++++++..+..+...|
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999988888888

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=1.6e-24  Score=187.94  Aligned_cols=183  Identities=20%  Similarity=0.217  Sum_probs=165.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      +|..+..+++..++...+.+.+...+|.. .+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++.+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            56778888888999889988887777776 68899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcc-cCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERY-PDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      ++.+++++++|++.++++|+++|+|.+...+.....+.+.+ |+ ++|++++|++.....+|..+||.+++++.++.|||
T Consensus        83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~-~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995         83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEE-KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            99999999999999999999999999999888888887776 55 89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        217 APFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      +.|++...+.++..++..+..|++++
T Consensus       162 ~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        162 SVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999888888777666666665443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1.6e-24  Score=183.79  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=163.7

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +.+|+.+..+++..+++.++........+ .+++++|.+..+.+++.+++.+++.+++++.|+++||+|||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            34577777788888888888877766665 56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh----
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ----  211 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~----  211 (256)
                      ..++.++++++++++.+++.|++.|++.+...+....++.|++|+ ++|++++++++....+|..+++++++++.+    
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-YFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999989999999998 999999999999999999999999998864    


Q ss_pred             --ccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        212 --FVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       212 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                        ..|||+.|++.+++.++..++.+++.+|.+
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence              368999999998888876666666666554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.93  E-value=3.8e-24  Score=180.40  Aligned_cols=182  Identities=20%  Similarity=0.206  Sum_probs=157.6

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      ++|..++.+.++.+..........++.|. +.+++|.++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            34555556566555544444444455565 47889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      .++.+++.+++|++.++++|+++|++.+...+...+++.|++|+ ++|++++|+++.+..+|..++|++++.+.++.|||
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            99999999999999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhheeecC
Q psy11010        217 APFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      +.|++.+++.++..+..+...|+.
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999988877666655555543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=1.2e-23  Score=177.42  Aligned_cols=181  Identities=14%  Similarity=0.174  Sum_probs=156.7

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      ..|+.+..+.++.+..........+.+|++ .+++|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            355655666666555555555555666665 6889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      +++.+++.++++++.+++.|+++|++.+...+...+++.|++|+ ++|++++++.....++|..++|.+++++.+..|||
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            99999999999999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhheeec
Q psy11010        217 APFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      +.|++.+++.++..+......|+
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~  197 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPS  197 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999887777655444443444

>KOG1330|consensus

Probab=99.92  E-value=1.6e-25  Score=183.57  Aligned_cols=186  Identities=21%  Similarity=0.293  Sum_probs=173.5

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ....++.+.++++...++.++.+.+..+++.. ++.+|++++..|++.+.+.+.+.+++|++|+++|||.||.++.+|..
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~  106 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF  106 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence            35567778889999999999999988877664 78899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      ++.++.++.+++..+|++.++|.+.|+|.+...+..+++++|.+|. .+|++.+++++.+..+|..+|.+++..+.+..+
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcc-hhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            9999999999999999999999999999999999999999999997 999999999999999999999999999988877


Q ss_pred             -chHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        215 -KTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                       |||.|+..+++.++..++.+++.+++.+
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence             9999999999999999988888776654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=3e-23  Score=171.99  Aligned_cols=173  Identities=27%  Similarity=0.460  Sum_probs=150.8

Q ss_pred             HHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh
Q psy11010         66 AIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~  145 (256)
                      +++.++.........+..+.++.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            44556666666667777775668999999999999999999999999999999999999999999999999999666666


Q ss_pred             hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHH
Q psy11010        146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL  225 (256)
Q Consensus       146 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~  225 (256)
                      +++.+.++++|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++.+.+..||++.|++.+++
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPP-EERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL  160 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchh-hhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence            67777999999999999999999999999999998 99999999999999999999999999999889999999999999


Q ss_pred             HHHHHhHhhheeec
Q psy11010        226 ALGDGCKCNYTIVQ  239 (256)
Q Consensus       226 ~~~~~~~~~~~~~~  239 (256)
                      .++..++..+..++
T Consensus       161 ~~~~~il~~~~~~~  174 (352)
T PF07690_consen  161 SLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHCCC--
T ss_pred             hhhhhhhHhhhhhh
Confidence            99877654344443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=3.7e-23  Score=176.69  Aligned_cols=180  Identities=16%  Similarity=0.137  Sum_probs=155.7

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      ++..+...++..+...+....+....|.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            44455555666666666655555666665 57799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchH
Q psy11010        138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTA  217 (256)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~  217 (256)
                      ++.++++++++++.+++.|++.|++.|...+...+++.|++|+ ++|++++++++.+..+|..++|.+.+++.+..|||+
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~  178 (434)
T PRK11663        100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY  178 (434)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            9999999999999999999999999999999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhhheeec
Q psy11010        218 PFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      .|++.+++.++..++..+..++
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999888776655544444443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=1.6e-22  Score=171.60  Aligned_cols=174  Identities=16%  Similarity=0.154  Sum_probs=152.5

Q ss_pred             HHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh
Q psy11010         66 AIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~  145 (256)
                      .+..+........+.|.+|. +.++++.+..+.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+++.+
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF  100 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            33344455566666777777 47889999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHH
Q psy11010        146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL  225 (256)
Q Consensus       146 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~  225 (256)
                      +++++.++++|+++|++.+...+...+++.|++|+ ++|++++++.+....+|..+||.+++.+.++.|||+.|++.+++
T Consensus       101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~  179 (413)
T PRK15403        101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM  179 (413)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999987777778889999997 99999999999999999999999999999989999999999988


Q ss_pred             HHHHHhHhhheeecCC
Q psy11010        226 ALGDGCKCNYTIVQKS  241 (256)
Q Consensus       226 ~~~~~~~~~~~~~~~~  241 (256)
                      .++..+..++..|+++
T Consensus       180 ~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        180 GLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHhCCCCc
Confidence            8877665555556543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=1e-22  Score=171.96  Aligned_cols=182  Identities=21%  Similarity=0.258  Sum_probs=161.3

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      .+++|+.+...++..+.+.++.....++.+.+ .+++|.++.+.+++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEV-AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45677888888899999998888887777765 78899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      +.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..+++.+++.+.+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999988766


Q ss_pred             --chHHHHHHHHHHHHHHhHhhheeec
Q psy11010        215 --KTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       215 --~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                        ||+.|++.++..++..+ .....|+
T Consensus       165 ~~w~~~f~~~~~~~~~~~~-~~~~~~~  190 (405)
T TIGR00891       165 DGWRALFFISILPIIFALW-LRKNIPE  190 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHhCCC
Confidence              99999887666555433 3333444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=7.4e-23  Score=170.82  Aligned_cols=167  Identities=13%  Similarity=0.078  Sum_probs=139.4

Q ss_pred             HhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHH
Q psy11010         73 NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVL  152 (256)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (256)
                      +.....+.+..|.. .+++|.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+++..+
T Consensus         4 ~~~~~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         4 QAIWVTFSPVLSLV-AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hHHHHHHHhhHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34444555666665 78899999999999999999999999999999999999988776655555544333334789999


Q ss_pred             HHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhH
Q psy11010        153 FLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       153 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                      +++|+++|++.+. .......++|++|+ ++|++++++.+.+..+|..+++++++++.++.|||+.|++.+++.++..++
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~-~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIRE-ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            9999999999986 45556777999998 999999999999999999999999999999999999999988888887777


Q ss_pred             hhheeecCCC
Q psy11010        233 CNYTIVQKSS  242 (256)
Q Consensus       233 ~~~~~~~~~~  242 (256)
                      .++..||+++
T Consensus       161 ~~~~lp~~p~  170 (368)
T TIGR00903       161 VLAALPALPF  170 (368)
T ss_pred             HHHHcCCCCC
Confidence            7777776543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=1.6e-22  Score=169.85  Aligned_cols=179  Identities=20%  Similarity=0.234  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+..+....++.........+..|.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   84 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS   84 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            33444444455566667777777765 68899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      +++.++++++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++.+.++.+|++.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        85 LGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG-EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999999999999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhheeecCC
Q psy11010        221 ILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +.+++.++..+..++..|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC
Confidence            988887777666665555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=1.2e-22  Score=171.97  Aligned_cols=184  Identities=17%  Similarity=0.142  Sum_probs=162.6

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +++|..+...++..+.+.++........|.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRM-AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            4667777778888888888888776666665 688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      ..++.+++.++++++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..+++.+++.+.+..+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            999998899999999999999999999999999999999999998 9999999999999999999999999998888899


Q ss_pred             hHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        216 TAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ++.|++.+++.++..++..+..|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999888776665555555555543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=6.1e-23  Score=177.62  Aligned_cols=178  Identities=18%  Similarity=0.224  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+..+++..++..++.....+..|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTI-AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34556667777777777776666665 68899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      ++++++++++.++++|+++|++.+...+...+++.|++|+ ++|++++++++....+|..+||.+++++.++.|||+.|+
T Consensus        82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            9999999999999999999999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhheeecC
Q psy11010        221 ILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~  240 (256)
                      +.+.+.++..++..+..+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCc
Confidence            98888777666666555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.90  E-value=1.2e-22  Score=181.04  Aligned_cols=184  Identities=13%  Similarity=0.099  Sum_probs=156.2

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +..|..+.+++++.+..++....+..++|.+ .++++.+..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i-~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSA-EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            4455566667777777777777666666654 678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc---
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF---  212 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~---  212 (256)
                      .+++.++++++++++.++++|++.|++.|...+...+++.|++|+ ++|++.++++..+..+|.++++.++.++...   
T Consensus       242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999888766543   


Q ss_pred             ----------cCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        213 ----------VGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       213 ----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                                .+||+.+++.++..++.. +..++.|+.++
T Consensus       321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPr  359 (742)
T TIGR01299       321 SFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPR  359 (742)
T ss_pred             hhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHH
Confidence                      358998888777666644 44455666543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=1.8e-22  Score=169.74  Aligned_cols=178  Identities=15%  Similarity=0.195  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+..+.+..+..........+.+|.+ .+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            34555666666666666777777775 68899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      ++++++++++.+++.|++.|++.+...+....++.|++++ ++|++++++...+..+|..++|++++++.+..|||+.|+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            9999999999999999999999999888888999999997 899999999999999999999999999999899999999


Q ss_pred             HHHHHHHHHHhHhhheeecC
Q psy11010        221 ILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~  240 (256)
                      +.+++.++..+..++..|+.
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            99888777666555555553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.90  E-value=1.3e-22  Score=171.58  Aligned_cols=172  Identities=20%  Similarity=0.233  Sum_probs=150.4

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      +.++.+..+++..++...+.....+.++.++.+++|.++.+.|++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            44556667777788888888888889998888999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhh---c-----hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhh
Q psy11010        137 FLSTLIFAFG---R-----TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGI  208 (256)
Q Consensus       137 ~~~~~~~~~~---~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~  208 (256)
                      +++.+.+.++   +     +++.+++.|+++|++.+...+...+++.|++|+ ++|++++++.+....+|..+||.++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~l~~~  170 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-LHTGRVISWNGIATYGALAIGAPLGVL  170 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-hhhccchhhhhhhhhHHHHHHHHHHHH
Confidence            7776655432   2     466789999999999999999999999999998 999999999999999999999999999


Q ss_pred             hhhccCchHHHHHHHHHHHHH
Q psy11010        209 MYQFVGKTAPFLILSALALGD  229 (256)
Q Consensus       209 l~~~~g~~~~~~~~~~~~~~~  229 (256)
                      +.++.||++.+++.+++.++.
T Consensus       171 l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        171 LYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HHHcccHHHHHHHHHHHHHHH
Confidence            999999999888776665543

>PRK12382 putative transporter; Provisional

Probab=99.90  E-value=3.9e-22  Score=168.27  Aligned_cols=168  Identities=20%  Similarity=0.210  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      ..+..+.++.++.........|.+|.++.+++|.++.+.|++.+++.++..+++++.|+++||+|||++++.+.+...++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            34444555566666677777888888888899999999999999999999999999999999999999999988877665


Q ss_pred             HHHH---Hh-----hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy11010        140 TLIF---AF-----GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ  211 (256)
Q Consensus       140 ~~~~---~~-----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~  211 (256)
                      .+..   ..     .++++.++++|+++|++.+...+...+++.|++|+ ++|++++++.+.+..+|..+||.+++++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-KHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-cccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4432   21     35778899999999999999989888999999998 999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHH
Q psy11010        212 FVGKTAPFLILSALALG  228 (256)
Q Consensus       212 ~~g~~~~~~~~~~~~~~  228 (256)
                      ..||++.+.+..++.++
T Consensus       174 ~~g~~~~~~~~~~~~~~  190 (392)
T PRK12382        174 HFGFAALALTTMVLPLL  190 (392)
T ss_pred             ccChHHHHHHHHHHHHH
Confidence            89999887765555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.90  E-value=5.6e-22  Score=168.04  Aligned_cols=184  Identities=16%  Similarity=0.179  Sum_probs=159.9

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      ++.+.....+.+..++..+....+.+.++.+ .+++|.++.+.++..+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAV-VEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            4445556666666666677777777777775 688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      ..++.+++.++++++.+++.|+++|++.+...+...+++.|.+|+ ++|.+++++......+|..++|.+++++.++.+|
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402         88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-ADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            999999999999999999999999999998888889999999998 9999999999888889999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        216 TAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ++.|++.+++.++..+..++..|+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999988888877666555555543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=5.6e-23  Score=167.17  Aligned_cols=186  Identities=12%  Similarity=0.113  Sum_probs=167.5

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ++.|+.++..+++.+....+.........|. +.++.++|.++.|++.+.+.+.+.++..+.|.++||.++|..+..+++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~-l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPA-LIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            4555666777777777666666655444444 578889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH--hhhhhc
Q psy11010        135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG--GIMYQF  212 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~--~~l~~~  212 (256)
                      +.++..++++++++.+.+.+..++.|..+|...|++...+..|+|+ ++||+..++++++.++|+.+.|++.  +++..+
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-KERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-cccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999998 9999999999999999999999999  899988


Q ss_pred             cCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        213 VGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      .+||..|++.++++++..++.++..+++|+
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            899999999999999988888888777664

>PRK10504 putative transporter; Provisional

Probab=99.89  E-value=8.3e-22  Score=170.10  Aligned_cols=178  Identities=24%  Similarity=0.284  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      +.++.++++.++..++.+.+.+..|.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSM-AQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            345566667777777777777777877 4679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHH
Q psy11010        140 TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPF  219 (256)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~  219 (256)
                      .+++.++++.+.+++.|+++|++.+...+...+++.|++|+ ++|+++.++.+....+|..+||.+++.+.++.|||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHH
Confidence            98888899999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhheeec
Q psy11010        220 LILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~  239 (256)
                      ++...+..+..+......++
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            99887777766655554443

>PRK10054 putative transporter; Provisional

Probab=99.89  E-value=9.2e-22  Score=166.11  Aligned_cols=175  Identities=11%  Similarity=0.073  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      +..+.+..++.........++++.++++++|.+..+.|++.+.+.++..+++++.|+++||+|||++++.+.++..++.+
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            34455566666777777788889898899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHH
Q psy11010        142 IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLI  221 (256)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~  221 (256)
                      +..++++++.+++++++.|.+.+...+...++..|.+|+ ++|++++++.+...++|..++|.+++++.+ .+|+..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence            899999998888889888888888888889999999998 999999999999999999999999999876 689999998


Q ss_pred             HHHHHHHHHhHhhheee
Q psy11010        222 LSALALGDGCKCNYTIV  238 (256)
Q Consensus       222 ~~~~~~~~~~~~~~~~~  238 (256)
                      .+++.++..++..+..+
T Consensus       167 ~~~~~~i~~i~~~~~~~  183 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQ  183 (395)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88877776555544443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=1.3e-21  Score=165.11  Aligned_cols=182  Identities=21%  Similarity=0.299  Sum_probs=156.8

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      .++.+....+...+..+......+.+|.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~   84 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            45555555555656666666777777775 68899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchH
Q psy11010        138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTA  217 (256)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~  217 (256)
                      ++.+++.++++++.+++.|++.|++.+...+....+..|.+++ ++++++.+..+.+..++..++|.+++++.+..||++
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            9999999999999999999999999998888888899999997 899999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHhHhhheeecCC
Q psy11010        218 PFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .|++.+++.++..++..+..||++
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccC
Confidence            999988877765555555555543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=8.7e-22  Score=167.82  Aligned_cols=170  Identities=16%  Similarity=0.167  Sum_probs=152.5

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +.+++.+....+..+.++++.....+..+. +.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            345566677777777778888777666665 4788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      .+++.++.+++++++.++++|++.|++.+..++....++.|++|+ ++|++++++...+..+|.++++.+.+.+.+..||
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999999999998999


Q ss_pred             hHHHHHHHHHHH
Q psy11010        216 TAPFLILSALAL  227 (256)
Q Consensus       216 ~~~~~~~~~~~~  227 (256)
                      |+.|++..+..+
T Consensus       172 ~~~f~i~~~~~~  183 (426)
T PRK12307        172 RAAFFVGLLPVL  183 (426)
T ss_pred             HHHHHHHHHHHH
Confidence            999987554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=1e-22  Score=175.58  Aligned_cols=180  Identities=14%  Similarity=0.058  Sum_probs=150.1

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      .+..+..+++.+++...+...+....|. +.+++|.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~  105 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence            4445555666666666666666666665 478999999999999999999999999999999999999999988888777


Q ss_pred             HHHHHHHh-----hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        138 LSTLIFAF-----GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       138 ~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      +..++.++     +++++.+++.|++.|++.+...+...++++|++|+ ++||+++|+++.+..+|..+++.+..++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        106 ICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR-RKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc-cceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            77665554     58999999999999999999999999999999998 9999999999999999999999998877665


Q ss_pred             c---CchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        213 V---GKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       213 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      .   +|+..|.+.+++.++..++.++..++
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            3   59998888888777766655555443

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=2.5e-21  Score=163.46  Aligned_cols=177  Identities=14%  Similarity=0.126  Sum_probs=154.1

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      ++++..+..++..++.+.......+.+|.+ .+++|.++++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPI-AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345666666777777777776666667775 6889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh-ccCc
Q psy11010        137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ-FVGK  215 (256)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~-~~g~  215 (256)
                      +++.+++.++++++.+++.|++.|++.+...+...+++.|++|+ ++|+++++..+....+|..++|.+.+.+.+ ..||
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            99999999999999999999999999999998889999999997 899999999989999999999999888764 5799


Q ss_pred             hHHHHHHHHHHHHHHhHhhh
Q psy11010        216 TAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~  235 (256)
                      |+.|.+.+++.++..++.++
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~  181 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLF  181 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999988877765554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.89  E-value=3.2e-21  Score=166.51  Aligned_cols=179  Identities=11%  Similarity=0.014  Sum_probs=144.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      +++.+....+..+...+......+..+.+ .+++|.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPII-RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34455555555555555555566666654 78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh----h--
Q psy11010        138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY----Q--  211 (256)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~----~--  211 (256)
                      ++.++++++++++.++++|++.|++.+... ....+++|++|+ ++|++++|+.+....+|..+++.+...+.    +  
T Consensus       113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999988654 456789999998 99999999998777777777766665442    2  


Q ss_pred             ---ccCchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        212 ---FVGKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       212 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                         ..|||+.|++.+++.++..++.++..++
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence               2489999999999888776666555433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.89  E-value=1.5e-21  Score=165.08  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF  143 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~  143 (256)
                      .+....++.........|+++.++++++|.++.+.|++.+...+...+.+++.|+++||+|||++++.+.++.+++.+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~   93 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM   93 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            34455555666667777888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHH
Q psy11010        144 AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILS  223 (256)
Q Consensus       144 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~  223 (256)
                      .+.++++.+++.+++.|++.+...+...+++.|++|+ ++|++++|+.+....+|..+||.+++++. ..||++.|++.+
T Consensus        94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~  171 (400)
T PRK11646         94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA  171 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            9999999999999999999998889999999999998 99999999999999999999999999998 679999999988


Q ss_pred             HHHHHHHhHhhheeec
Q psy11010        224 ALALGDGCKCNYTIVQ  239 (256)
Q Consensus       224 ~~~~~~~~~~~~~~~~  239 (256)
                      +..++..++..+..|+
T Consensus       172 ~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        172 VLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHhCCc
Confidence            8777665554444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=9.8e-22  Score=163.60  Aligned_cols=169  Identities=13%  Similarity=0.114  Sum_probs=147.5

Q ss_pred             HHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh
Q psy11010         66 AIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~  145 (256)
                      +...++.........+.+|.+. .+.+.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYV-LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            3445555555656666667764 568899999999999999999999999999999999999999999998888888877


Q ss_pred             hc-----hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        146 GR-----TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       146 ~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      .+     +++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..+||.+++++.+..||++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  162 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW  162 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            76     899999999999999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhhe
Q psy11010        221 ILSALALGDGCKCNYT  236 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~~  236 (256)
                      +.++..++..+..+..
T Consensus       163 ~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       163 VDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8887776655554443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.89  E-value=1.7e-21  Score=168.18  Aligned_cols=171  Identities=12%  Similarity=0.155  Sum_probs=151.3

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFVI  135 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~~  135 (256)
                      ++++.++.+++..+.+.+.++...+.++.|+++++|.+.++.+++.+.+.....+..+++|+++|| +|||++++.+.++
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            345567777778888888988888899999999999999999999999998888899999999999 9999999999999


Q ss_pred             HHHHHHHHHhhchHHH-HHHHHHHHHhhhhchhhhhhhhhhhcccCcc--hhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        136 MFLSTLIFAFGRTYGV-LFLARSLQGIGSSCSSVSGMGMLAERYPDDR--ERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~-~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      +.++.++++++.+... ++++++++|+|.|...+...+++.|.+|+ +  +|++++++++.+.++|..+||.+++++.++
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~-~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~  169 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPP-KDPRLDGAFTLFYMSINIGSLISLSLAPVIADK  169 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCC-CchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988776444 55789999999999999999999999987 5  457899999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHH
Q psy11010        213 VGKTAPFLILSALALG  228 (256)
Q Consensus       213 ~g~~~~~~~~~~~~~~  228 (256)
                      .||++.|++.++..++
T Consensus       170 ~gw~~~F~i~~i~~~~  185 (489)
T PRK10207        170 FGYSVTYNLCGAGLII  185 (489)
T ss_pred             hChHHHHHHHHHHHHH
Confidence            9999999986654443

>KOG3764|consensus

Probab=99.89  E-value=4.1e-23  Score=166.32  Aligned_cols=152  Identities=53%  Similarity=0.969  Sum_probs=143.5

Q ss_pred             cCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhh
Q psy11010         92 MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGM  171 (256)
Q Consensus        92 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  171 (256)
                      +.+++++|++.+...+.+.+.+++.|.+.||+|+|..+++|+.++....+++++.++++.++++|.++|+|.+...+...
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        172 GMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       172 ~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      ++++|.+|+|++|++++|+.-.+.++|..+||+.+|.+++..|++.+|++.++++++...+.++..++.+.+
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            999999998778999999999999999999999999999999999999999999999988888887764443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.89  E-value=2.3e-21  Score=165.58  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=136.5

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhc---CcchhHHH---HHHHHHHHHHHhhhHHHHhhhhcCchhHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLM---GETKAVGV---MFGSKAFVQLLANPLVGILTHRVGYSLPMF  130 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~  130 (256)
                      ++++.+...+++.+++.++...+.... +++.++++   .+..+.+.   +.+...++..++++++|+++||+|||+++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCS-LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            345566666777888888888865444 45567764   44544444   444455555599999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhh
Q psy11010        131 TGFVIMFLSTLIFAFGRTYG--------VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIG  202 (256)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g  202 (256)
                      .+.++++++.+++++++++.        .++++|+++|++.|...+...++++|++|+ ++|+++.++.+.+...|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE-GRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-CcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999887753        588899999999999999999999999998 999999999888888888888


Q ss_pred             hhHHhhhh--------hccCchHHHHHHHHHHHHH
Q psy11010        203 PPFGGIMY--------QFVGKTAPFLILSALALGD  229 (256)
Q Consensus       203 ~~i~~~l~--------~~~g~~~~~~~~~~~~~~~  229 (256)
                      +.+...+.        +.+|||++|++.+++.++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            77655443        2579999999888777664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=6.4e-22  Score=166.11  Aligned_cols=167  Identities=21%  Similarity=0.174  Sum_probs=148.4

Q ss_pred             HhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHH
Q psy11010         73 NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVL  152 (256)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (256)
                      ..+...+....|. +.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus         7 ~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (399)
T TIGR00893         7 YLDRANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL   85 (399)
T ss_pred             HHHHHhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3344444444444 578899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhH
Q psy11010        153 FLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       153 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                      +++|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++.+.+..+|++.|++.+++.++..++
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPA-SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 999999999999999999999999999999999999999988888776666


Q ss_pred             hhheeecCC
Q psy11010        233 CNYTIVQKS  241 (256)
Q Consensus       233 ~~~~~~~~~  241 (256)
                      .++..++++
T Consensus       165 ~~~~~~~~~  173 (399)
T TIGR00893       165 WLKFIPDPP  173 (399)
T ss_pred             hhheecCCC
Confidence            665555433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.88  E-value=1.4e-21  Score=168.97  Aligned_cols=183  Identities=16%  Similarity=0.112  Sum_probs=151.8

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhh--------cCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchh
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYL--------MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSL  127 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~  127 (256)
                      +...+......++.+..+++...+.+..+.+ ++++        +.++.+.+++.+.+.++..++++++|+++||+|||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESL-NTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHH-HHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3445566667777888888888877776654 5555        888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh------------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHH
Q psy11010        128 PMFTGFVIMFLSTLIFAFG------------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGL  195 (256)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~  195 (256)
                      +++.+.++..++.++++++            +.+..++++|+++|++.|...+...++++|++|+ ++|++++++.+.+.
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~~~  165 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-HIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-hhhhHHHHHHHHHH
Confidence            9999999998888877652            2246678999999999999999999999999998 99999999999999


Q ss_pred             HHHHhhhhhHHhhhh--------hccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        196 ALGVLIGPPFGGIMY--------QFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       196 ~lg~~~g~~i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .+|..+++.+++.+.        +..|||+.|++.+++.++..+. .++.|+++
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            999999888776543        3568999999988887776544 44556554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.88  E-value=9.3e-22  Score=164.35  Aligned_cols=161  Identities=21%  Similarity=0.280  Sum_probs=141.4

Q ss_pred             hhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy11010         76 LTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLA  155 (256)
Q Consensus        76 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (256)
                      .....++.|. +.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++
T Consensus        19 ~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (377)
T TIGR00890        19 VYTWTLLAPP-LGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT   97 (377)
T ss_pred             HhhhhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445444 578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      |++.|++.+..++.....+.+++|  ++|+++.++...+..+|..+++++.+.+.+..|||+.|++.+++.++..+..++
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP--DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC--cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888888888999986  579999999999999999887777777778889999999999888887766655


Q ss_pred             eeec
Q psy11010        236 TIVQ  239 (256)
Q Consensus       236 ~~~~  239 (256)
                      ..++
T Consensus       176 ~~~~  179 (377)
T TIGR00890       176 LIGY  179 (377)
T ss_pred             heec
Confidence            5543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=2.9e-21  Score=161.29  Aligned_cols=174  Identities=16%  Similarity=0.184  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF  143 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~  143 (256)
                      ..+++.++.........++.|.++++++|.++.+.+++.+++.+++.+++++.|+++||+|||+.++.+.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            45555555566666667777766789999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc-hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh----------c
Q psy11010        144 AFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ----------F  212 (256)
Q Consensus       144 ~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~----------~  212 (256)
                      ++++ +++.+++.|+++|++.+. .+...++++|++|+ ++|++++++......+|..+++.+++.+.+          +
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 GLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             HHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999 999999999999998664 45678899999998 999999999998888888888877766654          2


Q ss_pred             cCchHHH-HHHHHHHHHHHhHhhheeec
Q psy11010        213 VGKTAPF-LILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       213 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (256)
                      .+||+.| +..+++.++..++.+...++
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccc
Confidence            4799999 44455544444444444443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.88  E-value=5.8e-21  Score=165.86  Aligned_cols=171  Identities=20%  Similarity=0.281  Sum_probs=153.7

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +.+++.+..+++..++..++.....+..+.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEV-QGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            3456677778888888888887777666664 688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      .+++.++++++++++.+++.|++.|++.+...+...+++.|.+|+ ++|++++++......+|..++|.+.+.+.+..+|
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy11010        216 TAPFLILSALALG  228 (256)
Q Consensus       216 ~~~~~~~~~~~~~  228 (256)
                      |+.|++.++..++
T Consensus       174 ~~~f~~~~~~~~~  186 (496)
T PRK03893        174 RALFFIGILPIIF  186 (496)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999875444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=6.7e-21  Score=160.73  Aligned_cols=177  Identities=15%  Similarity=0.202  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH
Q psy11010         63 VIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI  142 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~  142 (256)
                      .+.....+..........+.+|.+ .+++|.++.+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            334444444555555555666665 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHH
Q psy11010        143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLIL  222 (256)
Q Consensus       143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~  222 (256)
                      +.++++.+.+++.|+++|++.+...+...+++.|.+|+ ++|++++++.+....+|..++|.+++.+.+..||++.|++.
T Consensus        85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            99999999999999999999999999999999999998 99999999999999999999999999988888999999998


Q ss_pred             HHHHHHHHhHhhheeecCC
Q psy11010        223 SALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~  241 (256)
                      +++.++..++.++..++++
T Consensus       164 ~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        164 AAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            8887777666555555543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=4.8e-21  Score=165.10  Aligned_cols=173  Identities=13%  Similarity=0.173  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhh--hcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKY--LMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFVIM  136 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~~~  136 (256)
                      +.+..+++..+.+.+.++...+.++.|+.++  +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            3456666777778888888888999998777  89999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcch---hhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRE---RGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~---r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      +++.++.+++++.+.+++++++.|+|.|...+...++++|++|+ ++   |+++.++++.+.++|..+||.+++++.++.
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~-~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYER-GDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCC-CCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999988888888999999999999999999999999986 54   888999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhHh
Q psy11010        214 GKTAPFLILSALALGDGCKC  233 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~  233 (256)
                      ||++.|.+.++..+++.+..
T Consensus       169 g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       169 GYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            99999999886655544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=6.2e-21  Score=161.02  Aligned_cols=168  Identities=14%  Similarity=0.088  Sum_probs=142.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL  138 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~  138 (256)
                      |.....+++..+... ......+.+|.. ++++|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.++
T Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          9 FMLLVLVLIGLNMRP-LLTSVGPLLPQL-RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHcch-hhhccchhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            334444444444322 234455666765 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc-CchH
Q psy11010        139 STLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV-GKTA  217 (256)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~-g~~~  217 (256)
                      +.++++++++++.++++|+++|++.+...+....++.+++|  ++|+++++++..+..+|..+|+.+++++.++. +||+
T Consensus        87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ--QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            99999999999999999999999999999999999999985  67999999999999999999999999988875 7999


Q ss_pred             HHHHHHHHHHHHH
Q psy11010        218 PFLILSALALGDG  230 (256)
Q Consensus       218 ~~~~~~~~~~~~~  230 (256)
                      .+.+.++..++..
T Consensus       165 ~~~~~~~~~~~~~  177 (393)
T PRK09705        165 TLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666555433

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=1e-20  Score=160.10  Aligned_cols=168  Identities=18%  Similarity=0.182  Sum_probs=147.6

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhch
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT  148 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~  148 (256)
                      ..+..+....+.|..+.+ .+++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   93 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAI-QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES   93 (401)
T ss_pred             HHHHHHHHHHHHhhHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            444455566666776664 6889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHH
Q psy11010        149 YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALG  228 (256)
Q Consensus       149 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  228 (256)
                      ++.+++.|+++|++.+...+...+++.|++|+ +++++..+.......+|..++|.+++++.++.||++.|++.+++.++
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  172 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            99999999999999888888888999999998 88999999998889999999999999999999999999998888877


Q ss_pred             HHhHhhheee
Q psy11010        229 DGCKCNYTIV  238 (256)
Q Consensus       229 ~~~~~~~~~~  238 (256)
                      ..+..++..+
T Consensus       173 ~~~~~~~~~~  182 (401)
T PRK11043        173 LILPTLRLKP  182 (401)
T ss_pred             HHHHHHHcCC
Confidence            6665554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.87  E-value=8.8e-21  Score=162.90  Aligned_cols=179  Identities=19%  Similarity=0.231  Sum_probs=146.5

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      .++|.++...++...........+....+. +.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   93 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKE-LQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL   93 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHH-HHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence            345656555555544333333333334454 4788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHH-HHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        136 MFLSTLIFAFGRTYGVLFL-ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      ..++.++++++++++.+++ .|++.|++.+...+...+++.++++  ++|+++.|+.+.+..+|..++|.+++.+.+..|
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY--RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH--hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            9999999999999888765 4689999999877777888899984  789999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHhhhee
Q psy11010        215 KTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      ||++|++.+++.++..+..++..
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999988776655544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.87  E-value=2.8e-21  Score=166.55  Aligned_cols=185  Identities=14%  Similarity=0.205  Sum_probs=153.8

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHh----------------------hhcCcchhHHHHHHHHHHHHHHh
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHK----------------------YLMGETKAVGVMFGSKAFVQLLA  112 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~  112 (256)
                      .+.++.....++++..+...+........+. +.+                      +++.+..+.|++.+.+.+++.++
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVA-MVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEE-cccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            3456666666666666655555544433332 223                      68899999999999999999999


Q ss_pred             hhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHH
Q psy11010        113 NPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG--RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI  190 (256)
Q Consensus       113 ~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~  190 (256)
                      +++.|+++||+|+|+++..+.++..++.+++.++  .+++.+++.|+++|++.+...+....+++|++|+ ++|++++++
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~  171 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-KERSRLLGM  171 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-HHHHHHHHH
Confidence            9999999999999999999999998888877543  5577889999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHhhhhhHHhhhhhcc-CchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        191 ALGGLALGVLIGPPFGGIMYQFV-GKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       191 ~~~~~~lg~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .+.+..+|..++|++++.+.+.. ||++.|++.+++.++..++.++..++++
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p  223 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP  223 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999884 9999999999888776666555554433

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=2.3e-21  Score=163.22  Aligned_cols=181  Identities=17%  Similarity=0.223  Sum_probs=155.3

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      .+++.+...++..+..++.........|.+ .+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAI-SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            345555555556666666665555555554 6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        137 FLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      .++.++..++++++.+++.+++.|++.+...+...+++.|++|+ ++|++++++.+....+|..+++.+++++.+..||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~  171 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR  171 (398)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCH-HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence            99999999999999999999999999999999999999999997 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhheeec
Q psy11010        217 APFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      +.|++.+++.++..++.++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~  194 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPE  194 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCC
Confidence            99998876666655555555544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.87  E-value=1.2e-20  Score=159.73  Aligned_cols=181  Identities=15%  Similarity=0.116  Sum_probs=144.9

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      .++.+....+..++.........++.+.+.++++|+++++.+++.+++.+++.+.+++.|++.||+|.|+++..+.++..
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34566666666666666666666666665455899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-----chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh--
Q psy11010        138 LSTLIFAFG-----RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY--  210 (256)
Q Consensus       138 ~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~--  210 (256)
                      +..++.+++     ++++.+++.|++.|++ +..++.....+++++|+ ++||+++|+.....++|..++++++..+.  
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~  189 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-AKQGSALGINGGLGNLGVSVMQLVAPLVIFV  189 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999988876     7999999999999998 77888899999999998 99999999996666666655555443322  


Q ss_pred             ---h-------------ccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        211 ---Q-------------FVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       211 ---~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                         +             ..+|+.++++..++.++..++.++..++.
T Consensus       190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence               2             23478888888888777776766665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.87  E-value=9.6e-21  Score=158.58  Aligned_cols=174  Identities=16%  Similarity=0.151  Sum_probs=146.5

Q ss_pred             HHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHH-HHHHHHHHHHHHHh
Q psy11010         67 IALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFT-GFVIMFLSTLIFAF  145 (256)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~-~~~~~~~~~~~~~~  145 (256)
                      +..++..+......|.++.++++++|.++.+.|++.+.+.+...+.+++.|+++||+|||+.++. +.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            34566667777778888988888999999999999999999999999999999999999887654 56666677778888


Q ss_pred             hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHH--HHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHH
Q psy11010        146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNA--MGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILS  223 (256)
Q Consensus       146 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~--~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~  223 (256)
                      +++++.+++.|++.|.+.+...|...++..|+.|+ +.|+++  .+......++|..+||.+++.+.+..|||+.|++.+
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADR-TGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-cchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            99999999999999888888888888899999876 677654  678888889999999999999999999999999998


Q ss_pred             HHHHHHHhHhhheeecCC
Q psy11010        224 ALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~  241 (256)
                      ++.++..++.++..|+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            887776666666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.87  E-value=2.9e-21  Score=166.14  Aligned_cols=175  Identities=15%  Similarity=0.147  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHhHhhhchhhhHHHHHhhhcCc--------chhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         63 VIVAIALVLDNMLLTTVEDVARENRHKYLMGE--------TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ..+.+..++..++...+.+..+.. ..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++.+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~  109 (481)
T TIGR00879        31 LIAAIGGLMFGYDTGVIGGALALP-AFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL  109 (481)
T ss_pred             HHHHHHHHhcccccchhhhhhhcH-HHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence            334444445555555555555544 4555555        7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh---chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH---hh
Q psy11010        135 IMFLSTLIFAFG---RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG---GI  208 (256)
Q Consensus       135 ~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~---~~  208 (256)
                      +..++.+++.+.   .+++.++++|++.|++.+...+...+++.|++|+ ++|++++++++.+..+|..+++.++   +.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~  188 (481)
T TIGR00879       110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-ALRGALTSLYQLAITFGILVAYGFGSGKVS  188 (481)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-hhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            999998888553   3455889999999999999999999999999998 9999999999999999999999999   67


Q ss_pred             hhhccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        209 MYQFVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       209 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ..+..+||+.|++.++..++..+. .++.++.
T Consensus       189 ~~~~~~w~~~f~~~~~~~~~~~~~-~~~l~~~  219 (481)
T TIGR00879       189 LNNTLGWRIPLGLQLIPAGLLFLG-LFFLPES  219 (481)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHH-HhcCCCC
Confidence            667789999999966665554433 3444543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.87  E-value=2.4e-20  Score=158.01  Aligned_cols=177  Identities=18%  Similarity=0.249  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchh-----HHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKA-----VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      ....+++..++.........+++|.+. +++|.+..+     .+++.+++.++..+++++.|+++||+|||++++.+.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   93 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence            344555666677777777788888875 668887554     48899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      .+++.+++.+.++++.+++.|++.|++.+ ..+....++.+.+|+ ++|++++++.+....+|..++|.+++.+.+..+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  171 (408)
T PRK09874         94 MGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPR-NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL  171 (408)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            99999888888999999999999999765 457778889999998 9999999999999999999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        216 TAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ++.|++.+++.++..+..++..+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        172 RPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999888777666665555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=9.9e-21  Score=158.75  Aligned_cols=164  Identities=15%  Similarity=0.211  Sum_probs=148.2

Q ss_pred             HhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy11010         75 LLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL  154 (256)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  154 (256)
                      ....+.|.+|.+ .+++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus         6 ~~~~~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          6 AIDMYLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            344556777876 5779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhh
Q psy11010        155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       155 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  234 (256)
                      .|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++.+.+..||++.|++.+++.++..+...
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPK-EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 99999999999999999999999999999999999999998888877666665


Q ss_pred             heeecC
Q psy11010        235 YTIVQK  240 (256)
Q Consensus       235 ~~~~~~  240 (256)
                      +..+++
T Consensus       164 ~~~~~~  169 (377)
T PRK11102        164 FFIPET  169 (377)
T ss_pred             HhCCcc
Confidence            555554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.87  E-value=2.6e-20  Score=161.48  Aligned_cols=179  Identities=20%  Similarity=0.213  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchh-HHH-----HHHHHHHHHHHhhhHHHHhhhhcCchhHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKA-VGV-----MFGSKAFVQLLANPLVGILTHRVGYSLPMFTG  132 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~-----~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~  132 (256)
                      +..+....++.+++.++...+....+. +.++++.+... ..+     +.++..++..++++++|+++||+|||+++..+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   93 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYA-LGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            345666778888999999887666554 46776533211 122     25777889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhchHHH--------HHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhh
Q psy11010        133 FVIMFLSTLIFAFGRTYGV--------LFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP  204 (256)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~  204 (256)
                      .++++++.+++++++|+..        ++++|+++|++.|..++...++++|++|+ ++||++.++...+..+|..+|+.
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~-~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD-RKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864        78899999999999999999999999998 99999999999888888888876


Q ss_pred             HHhhhh--------hccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        205 FGGIMY--------QFVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       205 i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      +...+.        ..+|||+.|++.+++.++..+ .....||+
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~-~~~~~~es  215 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLY-LRHALEET  215 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHH-HHHcCCCC
Confidence            665443        257999999997766554333 33444544

>PRK09952 shikimate transporter; Provisional

Probab=99.87  E-value=2.3e-20  Score=159.62  Aligned_cols=170  Identities=16%  Similarity=0.149  Sum_probs=139.8

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhh--cCcchhHHHHH-----HHHHHHHHHhhhHHHHhhhhcCchhHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYL--MGETKAVGVMF-----GSKAFVQLLANPLVGILTHRVGYSLPM  129 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~G~r~~l  129 (256)
                      ++++.+...++..+++.++...+..+.+..+.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34456777777888888988877666665555554  56665 45553     345566778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhh
Q psy11010        130 FTGFVIMFLSTLIFAFGRTYG--------VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLI  201 (256)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~  201 (256)
                      +.+.++++++.+++++++++.        .++++|+++|++.|...+....++.|++|+ ++|++..+..+.+..+|..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK-NKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999876        488899999999999999999999999998 99999999999999999998


Q ss_pred             hhhHHhhhh--------hccCchHHHHHHHHHHHH
Q psy11010        202 GPPFGGIMY--------QFVGKTAPFLILSALALG  228 (256)
Q Consensus       202 g~~i~~~l~--------~~~g~~~~~~~~~~~~~~  228 (256)
                      +..+..++.        +.+|||++|++.+++.++
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            887776654        257999999988777655

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.86  E-value=2.6e-21  Score=161.72  Aligned_cols=168  Identities=12%  Similarity=0.085  Sum_probs=146.9

Q ss_pred             HHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHH
Q psy11010         71 LDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYG  150 (256)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~  150 (256)
                      ...++........|. +.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++..++.+++.++++++
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   84 (379)
T TIGR00881         6 AYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLW   84 (379)
T ss_pred             HHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHH
Confidence            334444444445454 5788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhh-hHHhhhhhccCchHHHHHHHHHHHHH
Q psy11010        151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGP-PFGGIMYQFVGKTAPFLILSALALGD  229 (256)
Q Consensus       151 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~-~i~~~l~~~~g~~~~~~~~~~~~~~~  229 (256)
                      .+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++| .+++.+.+..+|++.|++.+++.++.
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSR-SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV  163 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCH-hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            999999999999999999999999999998 9999999999999999999999 57777777889999999988887776


Q ss_pred             HhHhhheeecC
Q psy11010        230 GCKCNYTIVQK  240 (256)
Q Consensus       230 ~~~~~~~~~~~  240 (256)
                      .++.++..+++
T Consensus       164 ~~~~~~~~~~~  174 (379)
T TIGR00881       164 SLICFLLLRDS  174 (379)
T ss_pred             HHHHheeeCCC
Confidence            66666655543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=2.3e-20  Score=160.31  Aligned_cols=181  Identities=11%  Similarity=0.025  Sum_probs=140.6

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      .+|..+...++................| ++.++ |.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            3444444444444444434333333444 45666 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHh-hhhhHHhhhhh
Q psy11010        137 FLSTLIFAFG----RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVL-IGPPFGGIMYQ  211 (256)
Q Consensus       137 ~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~-~g~~i~~~l~~  211 (256)
                      +++.+++++.    .+++.+++.|++.|++.+...+.....+.|++|+ ++|++++++++.+..+|.. .+|+++..+..
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9998888765    3677888999999999999888888899999998 9999999999999998864 45555444434


Q ss_pred             ccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        212 FVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       212 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ..|||+.|++.+++.++..++.+++.+++
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            45899999998888777666665555543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.86  E-value=3.2e-20  Score=161.42  Aligned_cols=186  Identities=17%  Similarity=0.097  Sum_probs=152.6

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhh----hcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKY----LMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF  130 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~  130 (256)
                      .+.+++.+..+.++.+.++++...+....+..-.+.    .+.+..+.+++.+...++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            345666777788888888898888777666542221    2345667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhch------HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhh
Q psy11010        131 TGFVIMFLSTLIFAFGRT------YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP  204 (256)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~  204 (256)
                      .+.++..++.++++++.+      ++.++++|+++|++.|...+....+++|++|+ ++|++++++.+....+|..+++.
T Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887        91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK-KWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887765      67899999999999999999999999999998 99999999999999999999998


Q ss_pred             HHhhhhh-----------------------ccCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        205 FGGIMYQ-----------------------FVGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       205 i~~~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      ++.++..                       ..+||+.+.+.++..++..+. .+..||+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr  229 (502)
T TIGR00887       170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPR  229 (502)
T ss_pred             HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHH
Confidence            8876532                       237999998887777665444 345566544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.86  E-value=5.8e-20  Score=153.61  Aligned_cols=143  Identities=12%  Similarity=0.076  Sum_probs=131.4

Q ss_pred             HhhhchhhhHHHHHhhhcCcchh-HHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy11010         75 LLTTVEDVARENRHKYLMGETKA-VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLF  153 (256)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (256)
                      ..-...++..+++.+++|+++++ .|.+.+++..++.++.++.|+++||+|.|+++..+.+.+.+..++.++++++..+.
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566666778899999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       154 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      +.|++.|++.|... +...++..++|+ ++|+++.++.+.+..+|.+++++++++ ...+||++-+.
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~-kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~  183 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPP-SRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence            99999999999999 889999999998 999999999999999999999999999 55678886543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.85  E-value=8.3e-20  Score=158.34  Aligned_cols=171  Identities=11%  Similarity=0.114  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFVIMFL  138 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~~~~~  138 (256)
                      +.+..+++..+.+.+.++.+.++++.|+.+++|.+.++.+++.+.+........+++|+++|| +|||+.++.+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            345566677777778877788888999989999999999999888877767777889999999 5999999999999999


Q ss_pred             HHHHHHhhc-hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc-chhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        139 STLIFAFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD-RERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~-~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      +.+++++++ +...++++++++|++.|...+...+++.|++|++ ++|..++++++.+.++|..+||.+++++.++.||+
T Consensus       101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~  180 (500)
T PRK09584        101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS  180 (500)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence            998888864 4566778899999999999998899999999851 23456888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy11010        217 APFLILSALALGDG  230 (256)
Q Consensus       217 ~~~~~~~~~~~~~~  230 (256)
                      +.|++.++..+++.
T Consensus       181 ~~F~i~~i~~~i~~  194 (500)
T PRK09584        181 VAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998876555543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.85  E-value=7.9e-20  Score=156.25  Aligned_cols=167  Identities=20%  Similarity=0.204  Sum_probs=137.1

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHH-HHH-----HHHHHHhhhHHHHhhhhcCchhHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMF-GSK-----AFVQLLANPLVGILTHRVGYSLPMF  130 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~G~r~~l~  130 (256)
                      .|++....++++.+++.++...+....|. +.++++.++.+.+... +..     .++..+++++.|+++||+|||++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   90 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATA-IAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI   90 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence            35556778888999999999988777665 4788888877765433 322     2223467899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhh
Q psy11010        131 TGFVIMFLSTLIFAFGRTYG--------VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIG  202 (256)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g  202 (256)
                      .+.++..++.++++++++++        .++++|+++|++.+...+....+++|++|+ ++|++++++.+....+|..++
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP-GRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc-ccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876        368899999999999999889999999998 999999999998888888888


Q ss_pred             hhHHhhhh--------hccCchHHHHHHHHH
Q psy11010        203 PPFGGIMY--------QFVGKTAPFLILSAL  225 (256)
Q Consensus       203 ~~i~~~l~--------~~~g~~~~~~~~~~~  225 (256)
                      +.+++.+.        +..|||+.|++..+.
T Consensus       170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence            88777652        467999999875443

>PRK10133 L-fucose transporter; Provisional

Probab=99.85  E-value=2.6e-19  Score=153.04  Aligned_cols=151  Identities=14%  Similarity=0.189  Sum_probs=130.4

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      ....+..+.++.++..+......+..|.+ ++++|.++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~  102 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            34455556666666666766666666765 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010        138 LSTLIF---AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY  210 (256)
Q Consensus       138 ~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~  210 (256)
                      ++.+++   .++++++.++++|+++|+|.+...+..++++.|..++ ++|.+.+++.+....+|..++|.+++.+.
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999875   4678999999999999999999999999999998765 77777899999999999999999887543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.85  E-value=1e-19  Score=153.61  Aligned_cols=170  Identities=21%  Similarity=0.215  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF  143 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~  143 (256)
                      .+++..++..++...+....+.. .++++.++.+.+++.+.+.+.+.+++++.|+++||+|||++++++.++.+++.+++
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            34555555555444444444444 57788899999999999999999999999999999999999999999999888877


Q ss_pred             HhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHH
Q psy11010        144 AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILS  223 (256)
Q Consensus       144 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~  223 (256)
                      .++.+.   ++.|+++|++.+...|...+++.|++|+ ++|++++++.+....+|..+||.++|++.+. .|+..+.+.+
T Consensus        86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~-~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~  160 (393)
T PRK11195         86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPG-EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA  160 (393)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            776554   6789999999999999999999999998 9999999999999999999999999999885 4777777666


Q ss_pred             HHHHHHHhHhhheeecC
Q psy11010        224 ALALGDGCKCNYTIVQK  240 (256)
Q Consensus       224 ~~~~~~~~~~~~~~~~~  240 (256)
                      ...++..+ ..+..|+.
T Consensus       161 ~~~~~~~~-~~~~l~~~  176 (393)
T PRK11195        161 LIYLLAAL-FNLFIPRL  176 (393)
T ss_pred             HHHHHHHH-HHhcCCCC
Confidence            55444333 33444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.85  E-value=1.7e-19  Score=151.68  Aligned_cols=154  Identities=16%  Similarity=0.139  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+..+++..++.........+.+|.+. +++|.+..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWL-AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777777888888888888875 6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      ++++++++++.++++|+++|++.+...+...+.+.+..++ ++|+++++.++....+|..+||.+++.+.+...+.
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633         86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            9999999999999999999999999888888888899987 89999999999999999999999999987754333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.84  E-value=2.5e-19  Score=151.82  Aligned_cols=171  Identities=10%  Similarity=0.120  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      +..++...+..++......++.|.+ ++++|.+..+.|++.+.+.+++.+++++.|++.||+|||++++.+.++++++.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            4455566666666666666777765 789999999999999999999999999999999999999999999999999988


Q ss_pred             HHHh---hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc------
Q psy11010        142 IFAF---GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF------  212 (256)
Q Consensus       142 ~~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~------  212 (256)
                      ++..   .++++.+++.+++.|+|.|...+..++++.+..|+ ++|++.+++.+...++|..++|.+++.+...      
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            7644   45788999999999999999999999999999997 8999999999999999999999999877422      


Q ss_pred             --------------------cCchHHHHHHHHHHHHHHhHhh
Q psy11010        213 --------------------VGKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       213 --------------------~g~~~~~~~~~~~~~~~~~~~~  234 (256)
                                          .+||++|++.+++.++..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~  204 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM  204 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                3699999998887776554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00897 2A0118 polyol permease family

Probab=99.84  E-value=3.4e-19  Score=150.91  Aligned_cols=177  Identities=14%  Similarity=0.150  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      +.+....++.+..........+..++++ +++|.++.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~   91 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG   91 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            3444455555554455444455666665 678999999999999999999999999999999999999999999988888


Q ss_pred             HHHHH---h-hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHH-hhhhhHHhhhhhccC
Q psy11010        140 TLIFA---F-GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV-LIGPPFGGIMYQFVG  214 (256)
Q Consensus       140 ~~~~~---~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~-~~g~~i~~~l~~~~g  214 (256)
                      .+++.   . .++++.+++.|++.|++.+...+...+.+.+.+|+ ++|++++|+++...++|. .++|.+++++.+..|
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897        92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            76542   3 25778888899999999988888888889999998 999999999999999996 689999999998888


Q ss_pred             chHHHHHHHHHHHHHHhHhhheee
Q psy11010        215 KTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      |+..++......++..++.++..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       171 EMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccC
Confidence            766655544443333333333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.83  E-value=2e-19  Score=153.93  Aligned_cols=180  Identities=12%  Similarity=0.068  Sum_probs=144.5

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      ++..+....+................| ++++ .|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            344444444544444444444443444 4444 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh----chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh-c
Q psy11010        138 LSTLIFAFG----RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ-F  212 (256)
Q Consensus       138 ~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~-~  212 (256)
                      ++.+++.+.    +++..+.+.|++.|++.+...+.....+.|++|+ ++|++++++++....+|..+++.+.+...+ .
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            988877654    4667778889999999999999889999999998 999999999999999999999888776444 5


Q ss_pred             cCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        213 VGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      .+||+.|++.+++.++..++.++..+++
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            6899999998888887666666555543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=3.5e-19  Score=147.22  Aligned_cols=168  Identities=25%  Similarity=0.408  Sum_probs=151.1

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      +.+..+..........+..+.+ .+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLL-AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            4455556666777777777776 467799999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHH
Q psy11010        145 FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSA  224 (256)
Q Consensus       145 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~  224 (256)
                      +.++++.+++.|++.|++.+...+...+++.|++|+ ++|++.+++.+....+|..++|.+++.+.+..+|++.+++.++
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999999999999998 9999999999999999999999999999999899999999888


Q ss_pred             HHHHHHhHhh
Q psy11010        225 LALGDGCKCN  234 (256)
Q Consensus       225 ~~~~~~~~~~  234 (256)
                      +.++..+...
T Consensus       162 ~~~~~~~~~~  171 (352)
T cd06174         162 LGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHH
Confidence            8777655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.83  E-value=1e-18  Score=147.54  Aligned_cols=177  Identities=15%  Similarity=0.128  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHH-HHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPM-FTGFVIMFLSTLI  142 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l-~~~~~~~~~~~~~  142 (256)
                      ...+..++.........|.++.++.+++|.+++++|++.+...+...+.+++.+.+.||+|||+.+ ..+.++.+++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~   98 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTL   98 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            344446666777777788889998999999999999998876665454444544449999999875 4556666677777


Q ss_pred             HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchh--hHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER--GNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r--~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      .+++++++.+++.+.+.|...+...+...+++.++.++ +.|  +...++.+.+.++|.++||++++.+.++.|||..|+
T Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~  177 (393)
T PRK15011         99 FAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADK-TGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL  177 (393)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence            88888888877666555555566778888888888765 544  345678889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhheeecCC
Q psy11010        221 ILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +.+++.++..+..++..|+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        178 SAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCccC
Confidence            998888777666666566543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.83  E-value=9.3e-20  Score=155.03  Aligned_cols=165  Identities=14%  Similarity=0.074  Sum_probs=137.6

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh---
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF---  145 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---  145 (256)
                      .++..+.........|.+ .++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+....   
T Consensus        26 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            444444445555556665 4667789999999999999999999999999999999999999888777776655432   


Q ss_pred             --hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHH
Q psy11010        146 --GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILS  223 (256)
Q Consensus       146 --~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~  223 (256)
                        .++++.+++.+++.|++.+...+...+++.|++|+ ++|+++.++.+....+|..+||.+++.+.+..+|++.|++.+
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence              46788888999999999998889889999999998 999999999999999999999999999999889999999887


Q ss_pred             HHHHHHHhHhhh
Q psy11010        224 ALALGDGCKCNY  235 (256)
Q Consensus       224 ~~~~~~~~~~~~  235 (256)
                      +..++..+..+.
T Consensus       184 ~~~~~~~~~~~~  195 (417)
T PRK10489        184 AGTFITLLPLLR  195 (417)
T ss_pred             HHHHHHHHHHHh
Confidence            777665554433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.83  E-value=8.1e-19  Score=150.08  Aligned_cols=174  Identities=13%  Similarity=0.141  Sum_probs=143.5

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGFVIMF  137 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~~~~~~  137 (256)
                      .+.+..+++..+...+.++....+++.|+.+++|.++.+.+.+.+.+.....++.+++|+++||+ |||++++.+.++..
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~   87 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA   87 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence            34455666667777777777778888898888999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhhc-hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcc--hhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        138 LSTLIFAFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDR--ERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      ++.++++..+ +...++++..+.++|.|...+...++++|.+|+ +  +|.+++++.+...++|+.++|.+.+++.+..|
T Consensus        88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~-~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G  166 (493)
T PRK15462         88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP-TDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS  166 (493)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCC-CCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            9987776543 223344555566677777778778999999987 4  79999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHh
Q psy11010        215 KTAPFLILSALALGDGCKC  233 (256)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~  233 (256)
                      |++.|.+.++..+++.+..
T Consensus       167 w~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        167 WAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999998776555544443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.83  E-value=3.2e-19  Score=154.29  Aligned_cols=153  Identities=14%  Similarity=0.165  Sum_probs=130.9

Q ss_pred             HHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhh
Q psy11010         85 ENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSS  164 (256)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  164 (256)
                      .++..++|-+ ....|+.+...++..++.++.|+++|.||||.+++.+.++..+|.++++.++|...++++..+.|+|.|
T Consensus        68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG  146 (599)
T PF06609_consen   68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAG  146 (599)
T ss_pred             HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhH
Confidence            3567888854 577899999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             chhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        165 CSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ..... ...++|..|. |.|+.+.++.....-+....++.++..+..+.+|||.|++..++..+.+++.++++.++
T Consensus       147 ~~~~~-~~~isEl~p~-k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  147 VQELA-ALAISELVPN-KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HHHHH-HHHHHHhccc-chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77654 6668999998 99998888777766666667888887777777999999999998888776665555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2532|consensus

Probab=99.83  E-value=1e-19  Score=154.86  Aligned_cols=154  Identities=22%  Similarity=0.250  Sum_probs=142.2

Q ss_pred             hhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHhhhhch
Q psy11010         89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR--TYGVLFLARSLQGIGSSCS  166 (256)
Q Consensus        89 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~  166 (256)
                      .+++.++.+.+++.+.++.|+.+++++.|++.||+|.|+++..+.++.+++.++...+.  +++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            36788999999999999999999999999999999999999999999999999998765  4457789999999999999


Q ss_pred             hhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc-cCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        167 SVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF-VGKTAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       167 ~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      +|+...+.++|.|+ ++|++..++...+..+|.+++-+++|++.+. .||++.|++.+++.++..++.+++..++|.+
T Consensus       146 ~pa~~~i~~~W~P~-~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  146 FPAIGSILAKWAPP-NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             HhhhhceeeeECCH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999 9999999999999999999999999999998 9999999999999999888877776665554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.82  E-value=1.8e-19  Score=159.75  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=140.0

Q ss_pred             HHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc
Q psy11010         68 ALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR  147 (256)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~  147 (256)
                      ..+............++. ++++++++.++.|++.+.+.+++.++.++.+++.||+|||+++.++.++++++.+++++.+
T Consensus        41 ~~~~~~~~~g~~~~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             HHHHHHHHHHHHHhhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            344444334444444444 5889999999999999999999999999999999999999999999999999999887653


Q ss_pred             ---------------------------------------------------hHHHHHHHHHHHHhhhhchhhhhhhhhhh
Q psy11010        148 ---------------------------------------------------TYGVLFLARSLQGIGSSCSSVSGMGMLAE  176 (256)
Q Consensus       148 ---------------------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~  176 (256)
                                                                         .+..++++|+++|+|.+..++...+++.|
T Consensus       120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d  199 (633)
T TIGR00805       120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD  199 (633)
T ss_pred             HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence                                                               14457789999999999999999999999


Q ss_pred             cccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc----------------------CchHHHHHHHHHHHHHHhHhh
Q psy11010        177 RYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV----------------------GKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       177 ~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~  234 (256)
                      ++|+ ++|++++++++....+|..+|+++++++.+.+                      +|+..|++.+++.++..+..+
T Consensus       200 ~~~~-~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       200 FAKS-KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             cCCc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998 99999999999999999999999999887542                      267778888888777665544


Q ss_pred             hee
Q psy11010        235 YTI  237 (256)
Q Consensus       235 ~~~  237 (256)
                      ++.
T Consensus       279 ~~p  281 (633)
T TIGR00805       279 FFP  281 (633)
T ss_pred             hCc
Confidence            433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00898 2A0119 cation transport protein

Probab=99.81  E-value=3.2e-19  Score=155.35  Aligned_cols=150  Identities=17%  Similarity=0.108  Sum_probs=135.9

Q ss_pred             HHhhhcCc---chhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhh
Q psy11010         87 RHKYLMGE---TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGS  163 (256)
Q Consensus        87 ~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  163 (256)
                      +.++++++   +.+.+++.+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|++.
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~  194 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGI  194 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Confidence            46789998   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        164 SCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       164 g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +...+...+++.|++|+ ++|+++.++...+..+|.+++|.++..+.+   ||+.|++.+++.++..+.. +..||++
T Consensus       195 ~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       195 GGIWVQAVVLNTEFLPK-KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             cchHHHHHHHhheecCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence            99999999999999998 999999999999999999999998877654   9999999988877765555 4455543

>KOG2533|consensus

Probab=99.80  E-value=7.8e-19  Score=149.95  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      .++..+++..+....+-..+......-+.++.+....+.+.+.+++.++++++.++.+.|.||++..+.+....+++.+.
T Consensus        45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~  124 (495)
T KOG2533|consen   45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF  124 (495)
T ss_pred             HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence            34444455555555554444333222245788889999999999999999999999999999999888888888888888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh------cc
Q psy11010        140 TLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ------FV  213 (256)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~------~~  213 (256)
                      .++....+|++.+++.|++.|+.++..+|....+++.|+.+ ++|+..+|++.+...+|.++|.+++..+.+      ..
T Consensus       125 ~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~-~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  125 GFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGK-SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh-hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence            87777799999999999999999999999999999999998 999999999999999999999999988643      35


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      ||||.|++.++++++..++.++.+|+.+.
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecCChh
Confidence            89999999999999999999998887765

>PTZ00207 hypothetical protein; Provisional

Probab=99.80  E-value=1.5e-17  Score=144.59  Aligned_cols=179  Identities=15%  Similarity=0.134  Sum_probs=140.7

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      .++|..+....+.....+..+. + ++..+.+++++|++..+.+++.++. .....++++.|++.||+|+|++++++.++
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~y~-f-sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFMYA-F-NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            4566666555555544433332 2 2334446889999999999998874 44556788899999999999999999999


Q ss_pred             HHHHHHHHHhh------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhh-hhhHHhh
Q psy11010        136 MFLSTLIFAFG------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLI-GPPFGGI  208 (256)
Q Consensus       136 ~~~~~~~~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~-g~~i~~~  208 (256)
                      ..++.++++++      ++++.+++.|++.|+|.+...+.....+.+++|  ++||++.|+...+.++|..+ +++..++
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp--~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP--SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999886      689999999999999999999988999999996  68999999999999999976 4444444


Q ss_pred             hhhccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        209 MYQFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       209 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +.  .+|+..|++.+++.++..++.+.+.++++
T Consensus       179 ~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        179 FS--DNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HH--HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            43  36888888888888887777776665543

>KOG0254|consensus

Probab=99.79  E-value=4.9e-18  Score=148.06  Aligned_cols=144  Identities=19%  Similarity=0.248  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhh
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE  176 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~  176 (256)
                      +.+++.+...++..+++++.|+++|++|||+.++.+.++..++.+++++++|..+++++|++.|+|.|......+.+++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc-cCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        177 RYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF-VGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       177 ~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      ..|+ +.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+. .++.|++++
T Consensus       170 iap~-~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  170 IAPA-HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             cCCh-hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            9998 9999999999999999999995544444332 48999999988888887776 666776554

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=4.8e-18  Score=141.53  Aligned_cols=149  Identities=17%  Similarity=0.170  Sum_probs=129.7

Q ss_pred             hhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy11010         77 TTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR  156 (256)
Q Consensus        77 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (256)
                      ....+++|.+ .+++|.++++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+.+ ..++.+.+++.|
T Consensus        17 ~~~~~~lp~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~   94 (355)
T TIGR00896        17 TSVGPLLPQI-RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT   94 (355)
T ss_pred             ccCcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            4455666765 78899999999999999999999999999999999999999999998888887777 678888899999


Q ss_pred             HHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc--CchHHHHHHHHHHHHH
Q psy11010        157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV--GKTAPFLILSALALGD  229 (256)
Q Consensus       157 ~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~--g~~~~~~~~~~~~~~~  229 (256)
                      ++.|++.+...+....++.|++|  ++|++++++++....+|..+++.+++.+.+..  +||+.|.+.+++.++.
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP--QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999999888888888899885  68999999999999999999999999888765  3999888776655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2615|consensus

Probab=99.79  E-value=2e-18  Score=138.70  Aligned_cols=121  Identities=26%  Similarity=0.384  Sum_probs=110.9

Q ss_pred             hhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhh
Q psy11010         89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSV  168 (256)
Q Consensus        89 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  168 (256)
                      +..+.+..-.|.+.+.+.++..+.++.+|.++||+|||++++.+++..++..++.+.+.|+..++++|++.|+..|-...
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v  140 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV  140 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH
Confidence            33445667889999999999999999999999999999999999999999999999999997777779999998886655


Q ss_pred             hhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy11010        169 SGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ  211 (256)
Q Consensus       169 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~  211 (256)
                      . .++++|.+++ ++|+.+++.+++.+++|.++||+++|++.+
T Consensus       141 ~-rAiisdV~se-k~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  141 I-RAIISDVVSE-KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             H-HHHHHhhcCh-hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            4 8999999998 999999999999999999999999999987

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=3.1e-18  Score=139.72  Aligned_cols=183  Identities=19%  Similarity=0.140  Sum_probs=151.7

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +..++.+.+..++..+.........++ ...+.+++|+|+.|.+++.++..+...+..++.|.+.||||.|++...+.++
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l-~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPL-GVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH-HhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            334455555555554444444444344 4445799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhch---HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        136 MFLSTLIFAFGRT---YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       136 ~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      ..+-.+..+++.+   ++++++++++.|++.+ .+....+.++++||+ +++|.++|++. ..++|..+...++..+...
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~-~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~  165 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPK-EKQGLALGIAG-AGNLGVAVAQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCCh-hhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence            9999998888654   4599999999999654 566678999999998 99999999999 8999999999999988888


Q ss_pred             cC---chHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        213 VG---KTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       213 ~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      .|   |+.+..+..+..++..+..++...+.+.
T Consensus       166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         166 FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            88   9999999999988888888877766554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.79  E-value=3.2e-17  Score=138.46  Aligned_cols=156  Identities=17%  Similarity=0.100  Sum_probs=129.4

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL  158 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (256)
                      +....|.++++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33456777788899999999999888888888899999999999999998887766666555555556777777788888


Q ss_pred             HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhhe
Q psy11010        159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       159 ~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      .+++.+...+....+..|.+|+  +|++++++++....+|..++|.++|.+.++.||+..|++.+++.++..+..++.
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~--~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG--QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8888887777777888999874  599999999999999999999999999999999999998888877766655543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.78  E-value=1.2e-17  Score=142.02  Aligned_cols=145  Identities=19%  Similarity=0.238  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHhhhhchhhhhh
Q psy11010         96 KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR----TYGVLFLARSLQGIGSSCSSVSGM  171 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~  171 (256)
                      ...+.+.++..+..+++.++.|+++||+|+|+++..+.++.+++..+.....    +.+.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999988877666532    235567789999999998888889


Q ss_pred             hhhhhcccCcchhhHHHHHHH-HHHHHHHhhhhhHHhhhhhc------cCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        172 GMLAERYPDDRERGNAMGIAL-GGLALGVLIGPPFGGIMYQF------VGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       172 ~~~~~~~~~~~~r~~~~g~~~-~~~~lg~~~g~~i~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .++.|.+|+ ++|++++|+.+ ...++|..+||.++|++.++      .||+.+|.+.+++.++..++.+++.+++.
T Consensus       331 ~~i~~~~p~-~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       331 VFVEKEVPV-HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHCCH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999998 99999999997 67889999999999999987      46999999998888888888777776553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.77  E-value=6.1e-18  Score=121.50  Aligned_cols=136  Identities=41%  Similarity=0.716  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc
Q psy11010        102 FGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD  181 (256)
Q Consensus       102 ~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~  181 (256)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+...+...+++.|.+|+ 
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-   82 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP-   82 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh-
Confidence            3456778889999999999999999999999999999988888888999999999999999999999999999999998 


Q ss_pred             chhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010        182 RERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       182 ~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      ++|++..++.+....+|..++|.+.+.+.+..+|++.+++.+++.++..+..++..|
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999899999999988888777666665543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.76  E-value=3e-17  Score=137.14  Aligned_cols=148  Identities=12%  Similarity=0.091  Sum_probs=126.7

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTY--GVLFLARSL  158 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l  158 (256)
                      ...+++ .+++|.++.+.+++.+...++..+++++.|++.||+|||+.+..+.++.+++.++..+.++.  ..+++..++
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       226 GLYKPY-GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            344555 46688888889999999999999999999999999999999999998888888777766532  334456778


Q ss_pred             HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHH
Q psy11010        159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG  230 (256)
Q Consensus       159 ~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  230 (256)
                      .|++.+...+...+++.|.+|+ ++|+++.|+.+....+|..++|.+.+.+.++.||++.|.+.+++.+++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGP-ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhh-hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            8888888888888899999998 9999999999999999999999999999999999999998887776643

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.76  E-value=1e-17  Score=142.63  Aligned_cols=149  Identities=15%  Similarity=0.157  Sum_probs=130.4

Q ss_pred             cCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhh
Q psy11010         92 MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGM  171 (256)
Q Consensus        92 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  171 (256)
                      +.+..+.|++.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999999999888888888999888899999999888888888


Q ss_pred             hhhhhcccCcchhhHHHHH-HHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        172 GMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       172 ~~~~~~~~~~~~r~~~~g~-~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .++.|.+|+ +.|++..+. ++....+|.+++|.+.|++.+..||+.+|.+.+++.++..++.++..++++
T Consensus       338 ~~~~~~~~~-~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        338 KYITLNFDV-RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHcCc-cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999998 899888766 678889999999999999999999999999988888776666665554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.76  E-value=8.3e-17  Score=136.95  Aligned_cols=169  Identities=17%  Similarity=0.109  Sum_probs=142.7

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL  158 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (256)
                      .....|.+.++.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            34456777766689999999999999999999999999999999888888888888888888888888888777788888


Q ss_pred             HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010        159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       159 ~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      .|++.+...+...+++.|..|+ +.||+++|+++....+|..+||.+.|++.+..|++..++..++..++..++.....+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPD-EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            9998888888888999999997 999999999999999999999999999999999998998888777776666666655


Q ss_pred             cCCCCccccc
Q psy11010        239 QKSSSHDRNI  248 (256)
Q Consensus       239 ~~~~~~~~~~  248 (256)
                      +.++.++++.
T Consensus       401 ~~~~~~~~~~  410 (417)
T PRK10489        401 ELRRFRQTPP  410 (417)
T ss_pred             cccccccccc
Confidence            5444443333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.75  E-value=6.3e-17  Score=153.46  Aligned_cols=142  Identities=15%  Similarity=0.074  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHH---HHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhh
Q psy11010         96 KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFT---GFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMG  172 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  172 (256)
                      ...++..+++.+.+.++++++|+++||+|||+++..   ..++..+..+.....++++.++++|+++|++.+...|...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457888999999999999999999999999997633   22222222223333478999999999999999999999999


Q ss_pred             hhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        173 MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       173 ~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      ++.+++|+ ++|++++|+.+.+..+|.++||.++|++.+..+|++.|+..+++.++..+ ..+..++
T Consensus       132 ~l~~~~~~-~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  196 (1140)
T PRK06814        132 ILPDHLNK-DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL-ASLFIPK  196 (1140)
T ss_pred             hhHhhcCc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HHhhCCC
Confidence            99999998 99999999999999999999999999999999999998554444444333 3333443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.75  E-value=7.1e-17  Score=136.48  Aligned_cols=174  Identities=14%  Similarity=0.132  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      ++.+....++.......+.|+++.++.+++|.++.+.+++.+++.++..+++++.|+++||+|||+.++.+.+..+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34444555566666677788999998888999999999999999999999999999999999999999887666655443


Q ss_pred             HH---Hhhc-----hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        142 IF---AFGR-----TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       142 ~~---~~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      ..   .+.+     ....+++.+++.|++.+...+....+..|..   ++++...|......++|..+||.+++.+.+ .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~  159 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS---RNSNFEYGKARMFGCVGWALCASIAGILFS-I  159 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhcccccchhhhhcccHHHHHHHHHhhhhc-c
Confidence            22   1111     2334456678888888888888777777753   334567778888889999999999998866 5


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      +|+..|++.+++.++..++.+...++
T Consensus       160 ~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       160 DPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999888888766655544443

>KOG0255|consensus

Probab=99.75  E-value=1.6e-17  Score=145.30  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=133.6

Q ss_pred             hhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhh
Q psy11010         89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSV  168 (256)
Q Consensus        89 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  168 (256)
                      +....+.....+..+++.+|..+|.+++|.++||+|||+++++++++..++.++.++++|++.+++.|++.|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            55677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        169 SGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       169 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ....+++|++++ ++|+.+..+ ......++.+++..++++..  +||+.+++..++.++..++ +++.+|.+
T Consensus       191 ~~~~~~~E~~~~-~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  191 VGFGLVAEIVSP-KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             HhHhhheeecCc-chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            999999999998 999999999 77777778888888888887  8999999999988876555 44444544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.75  E-value=2.6e-16  Score=131.75  Aligned_cols=153  Identities=18%  Similarity=0.080  Sum_probs=129.5

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQG  160 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  160 (256)
                      ...+.++.+++|.++.+.+++.+...+...++.++.|++.||+|||+++..+.++..+......+.++.+.+.+.+++.|
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  299 (375)
T TIGR00899       220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA  299 (375)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888999999999988888888888999999999999999998887776666666666677777778888999


Q ss_pred             hhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      ++.+...+....++.|..|+  ++++++++++....+|..++|.++|.+.+..||+..|++.+++.+++.++..+
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPG--RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            99998888888899999874  56799999999999999999999999999999999999988887776665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.75  E-value=2.7e-16  Score=133.03  Aligned_cols=156  Identities=18%  Similarity=0.129  Sum_probs=131.0

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL  158 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (256)
                      .....+.+.. +.|.  ...++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++
T Consensus       235 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        235 IATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3344555543 3454  345677788889999999999999999999999999988888888888888888888888999


Q ss_pred             HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010        159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       159 ~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      .|++.+..++.....+.|.+|+ ++|+++.|+++....+|..+++.+.|++.++.||++.|++.+++.+++.+..++..+
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPP-QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999888888888899997 999999999999999999999999999999999999999988888887666555433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.75  E-value=2.7e-16  Score=132.34  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      ++...+..++.......+....+.++ ++.|.++.++|.+.++..++..+..++.+++.||+|+|+.+..+.++..+..+
T Consensus       207 ~~~~l~~~~l~~~~~~~~~~~~~~~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~  285 (382)
T TIGR00902       207 NLRFLAAVCLIQGAHAAYYGFSAIYW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWA  285 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence            33333444444444555556677776 45899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHH-HHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        142 IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIAL-GGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~-~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      +.++.++.+.+++.+++.|+..+...+....++.+. |+ ++|+++.++++ ...++|..+||.++|++.|+.|+ ..|+
T Consensus       286 ~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~-~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~  362 (382)
T TIGR00902       286 IIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG-SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV  362 (382)
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence            999999999999999999999999999999999998 87 89999999986 57789999999999999999986 6788


Q ss_pred             HHHHHHHHHHhH
Q psy11010        221 ILSALALGDGCK  232 (256)
Q Consensus       221 ~~~~~~~~~~~~  232 (256)
                      +.+++++++.++
T Consensus       363 ~~~~~~~~~~~~  374 (382)
T TIGR00902       363 FMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            888887765444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.75  E-value=1e-16  Score=152.09  Aligned_cols=148  Identities=14%  Similarity=0.088  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCc--chhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGE--TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      .+++..++..+........+..++..+++.+  ....+++.+++.++..++++++|+++||+|||++++++.++.++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~   92 (1146)
T PRK08633         13 PLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTL   92 (1146)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHH
Confidence            3334444433333333333333344455554  34579999999999999999999999999999999988876655554


Q ss_pred             HH---HhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        142 IF---AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       142 ~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      +.   ...++++.++++|+++|++.+...+...+++.|++|+ ++|++++|+.+.+..+|.++|+.+++++.+.
T Consensus        93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633         93 LIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43   3457889999999999999999999999999999998 9999999999999999999999999999876

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.75  E-value=2.9e-16  Score=136.33  Aligned_cols=170  Identities=14%  Similarity=0.138  Sum_probs=126.4

Q ss_pred             HHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH---HHhhc
Q psy11010         71 LDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI---FAFGR  147 (256)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~---~~~~~  147 (256)
                      .....++......|.++++.+|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...++
T Consensus       261 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  340 (490)
T PRK10642        261 ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN  340 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334445555567788887788988888888888889999999999999999999999988877654433322   22344


Q ss_pred             hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHH
Q psy11010        148 TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALA  226 (256)
Q Consensus       148 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~  226 (256)
                      +...+++++++.|++.+........++.|.+|+ +.|++++|+.+....+++.++|.+.+++.+..+ |+.++++..+.+
T Consensus       341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~  419 (490)
T PRK10642        341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-HIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA  419 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            567777888888888777777778889999998 999999998544455667789999999887654 777777666666


Q ss_pred             HHHHhHhhheeecCCC
Q psy11010        227 LGDGCKCNYTIVQKSS  242 (256)
Q Consensus       227 ~~~~~~~~~~~~~~~~  242 (256)
                      ++..+..++ .||+++
T Consensus       420 ~i~~~~~~~-~pes~~  434 (490)
T PRK10642        420 VIGLITGVT-MKETAN  434 (490)
T ss_pred             HHHHHHHHH-hccccC
Confidence            665555444 465544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.75  E-value=5.5e-17  Score=136.30  Aligned_cols=160  Identities=20%  Similarity=0.192  Sum_probs=122.8

Q ss_pred             HHhHhhhchhhhHHHHHhhh-cCcchhHHHHHHH-----HHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh
Q psy11010         72 DNMLLTTVEDVARENRHKYL-MGETKAVGVMFGS-----KAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~  145 (256)
                      +.++.+.+....+...++.+ +.++++.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~   84 (394)
T TIGR00883         5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            34444444444333333332 2445555555443     23333468899999999999999999999999999999999


Q ss_pred             hchHH--------HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh-------
Q psy11010        146 GRTYG--------VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY-------  210 (256)
Q Consensus       146 ~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~-------  210 (256)
                      ++++.        .+++.|+++|++.+...+...+++.|++|+ ++|++..++.+.+..+|..+++.++..+.       
T Consensus        85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP-GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            88764        478899999999999999999999999998 99999999999999999999998877653       


Q ss_pred             -hccCchHHHHHHHHHHHHHHhH
Q psy11010        211 -QFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       211 -~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                       +..+||+.|++.+++.++...+
T Consensus       164 ~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       164 LLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             hhccchHHHHHHHHHHHHHHHHH
Confidence             3568999998877776654433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.75  E-value=1.1e-16  Score=138.17  Aligned_cols=174  Identities=13%  Similarity=0.057  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .++..++..++............|.|+++++|.+..+.++..+...++..++.++.|+++||+|||+.+.....+..++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            34445555555455555555678888888899999999999999999999999999999999999988766544444333


Q ss_pred             H--HHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHhhhhhHHhhhhh------
Q psy11010        141 L--IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL-GVLIGPPFGGIMYQ------  211 (256)
Q Consensus       141 ~--~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l-g~~~g~~i~~~l~~------  211 (256)
                      .  .....++...+.+.+++.|++...........+.|.+|+ ++||++.|+.+....+ |..++|.+.|++.+      
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence            2  223345565666777778865443333334677799998 9999999999988886 77999999999999      


Q ss_pred             ------ccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        212 ------FVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       212 ------~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                            ..||+..|++.++..+++.+..++
T Consensus       418 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        418 PIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence                  578999999988877776655544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.74  E-value=1.5e-16  Score=133.80  Aligned_cols=159  Identities=13%  Similarity=0.033  Sum_probs=126.6

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH-HHHHHH-HH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV-IMFLST-LI  142 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~-~~~~~~-~~  142 (256)
                      +.+..+..........|++|.++ +++|.+.+++|++.+.+.+...++++++|.++||+||++....... ...+.. ..
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~   87 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF   87 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            34445555566677788889886 6789999999999999999999999999999999998544322211 111111 23


Q ss_pred             HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHH
Q psy11010        143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLIL  222 (256)
Q Consensus       143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~  222 (256)
                      +..+++++.+++.|+++|.+.+...|...++..++  + ++|++..|......++|..++|++++++.++.|||..|++.
T Consensus        88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            34678899999999999999988888888887664  3 78899999999999999999999999999999999999887


Q ss_pred             HHHHH
Q psy11010        223 SALAL  227 (256)
Q Consensus       223 ~~~~~  227 (256)
                      ....+
T Consensus       165 ~~~~~  169 (382)
T TIGR00902       165 TAGLA  169 (382)
T ss_pred             HHHHH
Confidence            65533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03699 putative transporter; Provisional

Probab=99.74  E-value=2.1e-16  Score=133.58  Aligned_cols=167  Identities=13%  Similarity=0.017  Sum_probs=135.8

Q ss_pred             HHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh
Q psy11010         66 AIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~  145 (256)
                      .+..++.......+....|.++++++|.+..+.+++.+.+.++..++.++.|+++||+++|+.+.....+..+..++...
T Consensus       211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~  290 (394)
T PRK03699        211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            33333333344445567788888889999999999999999999999999999999999999998888777777666666


Q ss_pred             hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHH
Q psy11010        146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL  225 (256)
Q Consensus       146 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~  225 (256)
                      .++.+.+.+..++.|++.+..++...++..|..|  +++++..+.......+|..++|.+.|++.+..|++..+++.+++
T Consensus       291 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~  368 (394)
T PRK03699        291 TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK--VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL  368 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence            7777677777788899888888888888888776  45677888888888999999999999999999999999988887


Q ss_pred             HHHHHhHhh
Q psy11010        226 ALGDGCKCN  234 (256)
Q Consensus       226 ~~~~~~~~~  234 (256)
                      .+++.+...
T Consensus       369 ~~~~~~~~~  377 (394)
T PRK03699        369 YAVVFVMCI  377 (394)
T ss_pred             HHHHHHHHH
Confidence            777655433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.74  E-value=2.4e-16  Score=133.51  Aligned_cols=170  Identities=14%  Similarity=0.059  Sum_probs=138.8

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-----Cchh-HHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-----GYSL-PMFTGFVIMFL  138 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~-~l~~~~~~~~~  138 (256)
                      ....++.++.........+|.+++ +.|.+.+++|++..+...  .+.++++|+++||+     |||+ .+..+.++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            344556667777777788888875 569999999999777775  58999999999999     8765 67888888877


Q ss_pred             HHHHHHhh---chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc-cC
Q psy11010        139 STLIFAFG---RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF-VG  214 (256)
Q Consensus       139 ~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~-~g  214 (256)
                      +..++.+.   .+++.+++..++.+++.+...+...+++.|++|+ ++|+++.++...+..+|..+++.+++.+.+. .|
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g  159 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG  159 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence            77777765   3567777777788888888899999999999998 9999999999999999999999999999885 59


Q ss_pred             chHHHHHHHHHHHHHHhHhhheeec
Q psy11010        215 KTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      ||..|++.+++.++..+.. +..++
T Consensus       160 w~~~f~i~a~~~l~~~l~~-~~~~e  183 (402)
T PRK11902        160 WGNTYLLMAGLMLAGALTT-LWAPE  183 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            9999999888777655543 33443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.74  E-value=2.7e-16  Score=136.27  Aligned_cols=174  Identities=13%  Similarity=0.116  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-----CchhH-HHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-----GYSLP-MFTGFVI  135 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~-l~~~~~~  135 (256)
                      ...+++..+..+.......+.+|.++ ++.|.+.++++.. +.....+ ++++++|+++||+     |||+. +..+.+.
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l-~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~   90 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWM-TVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL   90 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence            44455555556666666777778775 5568898888886 3333443 5899999999999     99885 5677777


Q ss_pred             HHHHHHHHHhh---chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh-
Q psy11010        136 MFLSTLIFAFG---RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ-  211 (256)
Q Consensus       136 ~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~-  211 (256)
                      .+++...+++.   ++++.+.+.+++.+++.+...+...+++.|++|+ ++|+++.++...+..+|..+++.+++++.+ 
T Consensus        91 ~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         91 LLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-EERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777776664   4677888899999999999999999999999998 999999999999999999999999999998 


Q ss_pred             ccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        212 FVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       212 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ..|||..|++.+++.++..+..++ .+++
T Consensus       170 ~~GWr~~f~i~a~l~ll~~l~~~~-~~e~  197 (491)
T PRK11010        170 YLGWQGMYWLMAALLIPCIIATLL-APEP  197 (491)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            579999999998887776555444 4443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.74  E-value=9.7e-17  Score=135.95  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=133.2

Q ss_pred             hhchhhhHHHHHhhhcCcc---hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy11010         77 TTVEDVARENRHKYLMGET---KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLF  153 (256)
Q Consensus        77 ~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (256)
                      ....+..+.+..+..+...   ...+.+.++..++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLG  315 (408)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3344556666554333222   1345667777888889999999999999999999999888888877777777888888


Q ss_pred             HHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHh
Q psy11010        154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKC  233 (256)
Q Consensus       154 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  233 (256)
                      +.+++.|++.+...+...+++.+..|+ ++||+.+++++....+|..+||.++|.+.+..||++.|++.+++.++..+..
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSN-QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCc-ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999997 9999999999999999999999999999999999999999999888877766


Q ss_pred             hheee
Q psy11010        234 NYTIV  238 (256)
Q Consensus       234 ~~~~~  238 (256)
                      ++..+
T Consensus       395 ~~~~~  399 (408)
T PRK09874        395 WNSLR  399 (408)
T ss_pred             HHHHH
Confidence            65443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.74  E-value=3.1e-16  Score=129.62  Aligned_cols=164  Identities=23%  Similarity=0.277  Sum_probs=146.3

Q ss_pred             HHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchh-HHHHHHHHHHHHHHHHHhhch
Q psy11010         70 VLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSL-PMFTGFVIMFLSTLIFAFGRT  148 (256)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~-~l~~~~~~~~~~~~~~~~~~~  148 (256)
                      +.............+.+..+.+|.++.+.+++.+...++..++.++.+++.||+|||+ .+..+.++..++.+.....++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344444455556777766666889999999999999999999999999999999999 999999999999999988888


Q ss_pred             HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHH
Q psy11010        149 YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALG  228 (256)
Q Consensus       149 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  228 (256)
                      .+.+.+..++.|++.+...+...+++.|..|+ ++|++.+++.+....+|..++|.+.+.+.+..+|+..+.+.+++.++
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPP-EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence            88889999999999999999999999999998 99999999999999999999999999999989999999999999888


Q ss_pred             HHhHhh
Q psy11010        229 DGCKCN  234 (256)
Q Consensus       229 ~~~~~~  234 (256)
                      ..+..+
T Consensus       344 ~~i~~~  349 (352)
T cd06174         344 AALLLL  349 (352)
T ss_pred             HHHHhe
Confidence            666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.74  E-value=2.2e-16  Score=132.52  Aligned_cols=172  Identities=16%  Similarity=0.093  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchh--HHHH------H
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSL--PMFT------G  132 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~--~l~~------~  132 (256)
                      .+...++..+.............+.++.+++|.++.+.+++.+...++..++.++.|+++||+|||+  ....      +
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            3444445555555555566667788888888999999999999999999999999999999999986  1111      1


Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        133 FVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      .++..+........++.+.......+.+.+.+ ..+...+++.|.+|+ ++|++++|+.+....+|..++|.+.+.+.+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~  373 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-NIAGLTGGLINSLGNLGGIVGPIVIGAIAAT  373 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-hHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence            11111111112222333333333444444444 788889999999998 9999999999999999999999999999999


Q ss_pred             cC-chHHHHHHHHHHHHHHhHhh
Q psy11010        213 VG-KTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       213 ~g-~~~~~~~~~~~~~~~~~~~~  234 (256)
                      .| |+..|++.+++.+++.+..+
T Consensus       374 ~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       374 TGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHH
Confidence            88 99999988888777665544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.74  E-value=1.8e-16  Score=134.40  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=129.0

Q ss_pred             hchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q psy11010         78 TVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARS  157 (256)
Q Consensus        78 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (256)
                      ......|.++ ++.|.++.+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..+
T Consensus       238 ~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK11551        238 FLLNWLPSLL-VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHHHHH-HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3334566665 457999999999999999999999999999999999999998877777777777777777777777788


Q ss_pred             HHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHHHHHHhHhhhe
Q psy11010        158 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       158 l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      +.|++.+...+...+++.|.+|+ ++|++++|+.+....+|..+||.++|.+.++.+ |...++......+++.+..++.
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPT-QVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcch-hhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88988888888889999999998 999999999999999999999999999998754 5666666655555544444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.73  E-value=1.8e-16  Score=135.06  Aligned_cols=175  Identities=15%  Similarity=0.119  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      ++.+.+..++.........++++.++.+++|.++.+.|++.+++.++..+++++.|+++||+|||++++.+..+.+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~   91 (420)
T PRK09528         12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG   91 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            33344455555555566788999998888999999999999999999999999999999999999999887665554433


Q ss_pred             HHH---hhch-----HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        142 IFA---FGRT-----YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       142 ~~~---~~~~-----~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      ...   .+..     ....+++.++.|.+.....+....+..+ . . +++++.+|.......+|..++|++++.+.+ .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~  167 (420)
T PRK09528         92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-S-RRSGFEYGRARMWGSLGWALCAFIAGILFN-I  167 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-H-hhccccchhhHHhhhHHHHHHHHHHHHHHh-c
Confidence            221   1111     1111222333333333333333333322 2 2 566778888888999999999999999887 4


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      +|++.|++.+++.++..++.++..+++
T Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        168 NPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             CchHhHHHHHHHHHHHHHHHhcccccc
Confidence            899999998888777666655544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.73  E-value=5.7e-16  Score=130.68  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=127.1

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQG  160 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  160 (256)
                      ...++++.++.|.+..+.+++.+...++..+++++.|+++||+++|+.+....+.......+....++.+.+.++.++.|
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            44566667778999999999999999999999999999999999887544433333333334445667777788888999


Q ss_pred             hhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      ++.+...+...+.+.+..|  ++|++++|+++....+|..+||.++|++.++.|++..|++.+++.+++.+......+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP--DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9888777777888888865  588999999999999999999999999999999999999999888887777666554

>KOG2504|consensus

Probab=99.73  E-value=1.4e-16  Score=137.34  Aligned_cols=181  Identities=20%  Similarity=0.271  Sum_probs=152.8

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ..+-|.+....++..+...-....+. ++-..+.++++.+.++++|+.++......+..|+.+.+.||+|.|++.+.|.+
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~G-v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFG-LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheeh-hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            34455555555555544333333333 44444578899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHH-HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        135 IMFLSTLIFAFGRTYGVLFLA-RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~-~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      +..++.++.+++++++.+++. -++.|+|.|..+......+..+|.  ++|+.+.|+...+.++|.++-|.+...+.+..
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~--kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~  197 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE--KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY  197 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH--HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence            999999999999999888775 577999999999999999999994  89999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheee
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      |||+.+++.+.+.+-.++......|
T Consensus       198 G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  198 GWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999998776666666555

>PRK12382 putative transporter; Provisional

Probab=99.73  E-value=6.5e-16  Score=130.38  Aligned_cols=155  Identities=16%  Similarity=0.106  Sum_probs=131.6

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL  158 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (256)
                      .....+.++. +.+.+.  .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++
T Consensus       235 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        235 IGTFVSLYFA-SKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHH-hcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3344555553 345543  5666777888889999999999999999999999999888888888888888888888999


Q ss_pred             HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhhee
Q psy11010        159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       159 ~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      .|++.+...+...+.+.|.+|+ ++|+++.|+++....+|..++|.+.+++.++.||+..|.+.+++.++..++.++..
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPS-QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999998888888899999998 99999999999999999999999999999999999999999988888776665543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.73  E-value=1.7e-15  Score=127.98  Aligned_cols=169  Identities=11%  Similarity=0.026  Sum_probs=130.5

Q ss_pred             HHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh-hchH
Q psy11010         71 LDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF-GRTY  149 (256)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~  149 (256)
                      +............|.++.+ +|.+..+.+...+.+.++..+++++.|++.||+|||+.+..+..+.+++.++... ..+.
T Consensus       216 ~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~  294 (393)
T PRK09705        216 LINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL  294 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH
Confidence            3344444455667777654 7999999999999999999999999999999999999999888777777665543 2222


Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHHHH
Q psy11010        150 GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALALG  228 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~  228 (256)
                      ..+  ..++.|++.+...+.......+.+++++++++..|+.+....++..++|.+.|++.+..| |...|.+.++..++
T Consensus       295 ~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (393)
T PRK09705        295 PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG  372 (393)
T ss_pred             HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            222  234678888888887777777877532789999999999999999999999999999876 88888887777777


Q ss_pred             HHhHhhheeecCCC
Q psy11010        229 DGCKCNYTIVQKSS  242 (256)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (256)
                      ..+....+.||++.
T Consensus       373 ~~~~~~~~~~~~~~  386 (393)
T PRK09705        373 LMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHhcccccc
Confidence            66666665555443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.72  E-value=3.2e-16  Score=130.60  Aligned_cols=157  Identities=17%  Similarity=0.042  Sum_probs=126.4

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-----CchhHH-HHHHHHHHHHHHHHHhh---chH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-----GYSLPM-FTGFVIMFLSTLIFAFG---RTY  149 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~l-~~~~~~~~~~~~~~~~~---~~~  149 (256)
                      ..+..|.+ .+++|++.+++|+.... .+...+ .+++|++.||+     ||||.+ +.+.++.++.....++.   .+.
T Consensus         7 ~~~~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         7 VGNTLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             HHhHHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            34455555 57789999999999755 455554 99999999998     888874 56777777776666666   455


Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC--------chHHHHH
Q psy11010        150 GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG--------KTAPFLI  221 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g--------~~~~~~~  221 (256)
                      +.+....++.+++.+...+...+++.|++|+ ++|+++.++...+..+|.++++.+++.+.+..|        ||..|++
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSD-EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            5666677788888888889999999999998 999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHhHhhheeec
Q psy11010        222 LSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~  239 (256)
                      .+++.++..+..++..+|
T Consensus       163 ~ai~~l~~~~~~~~~~~e  180 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKE  180 (356)
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            988877765555544444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.72  E-value=4e-16  Score=131.28  Aligned_cols=154  Identities=13%  Similarity=0.051  Sum_probs=122.7

Q ss_pred             HHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCch----hHHHHHHHHHHHHHHHHHhhc
Q psy11010         72 DNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYS----LPMFTGFVIMFLSTLIFAFGR  147 (256)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r----~~l~~~~~~~~~~~~~~~~~~  147 (256)
                      .........|++|.++ +++|.+..++|++.+++.++..++++++|++.||+|||    +.+.....+.  .......++
T Consensus        16 ~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~   92 (382)
T PRK11128         16 YFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH   92 (382)
T ss_pred             HHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence            3345566778888886 66899999999999999999999999999999999984    3332222221  222334467


Q ss_pred             hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHH
Q psy11010        148 TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL  227 (256)
Q Consensus       148 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~  227 (256)
                      +++.+++.|++.|++.+...+...+++.++  . ++|+++.+......++|..+||++++++.+++|||..|++.++..+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~-~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~  169 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--Q-KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA  169 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--H-hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            899999999999999998888888887776  3 6788888888888999999999999999999999999988776555


Q ss_pred             HHHh
Q psy11010        228 GDGC  231 (256)
Q Consensus       228 ~~~~  231 (256)
                      +..+
T Consensus       170 ~~~~  173 (382)
T PRK11128        170 SMLL  173 (382)
T ss_pred             HHHH
Confidence            5433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.72  E-value=1.9e-15  Score=127.11  Aligned_cols=150  Identities=14%  Similarity=0.126  Sum_probs=123.8

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQG  160 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  160 (256)
                      .+.|.+.+ +.|.++.+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+...  . ........++.|
T Consensus       221 ~~lp~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        221 GLMPLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            45566654 5688988999999999999999999999999999999999888877777665443  2 233445677788


Q ss_pred             hhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      ++.+...|...+++.|..|+ ++++...+.++...++|..+||.++|++.|+.||++.|.+.+.+.++..+..++
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEH-HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            87778889999999999987 788888888888999999999999999999999999999988888776555444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.72  E-value=1.1e-15  Score=136.69  Aligned_cols=139  Identities=19%  Similarity=0.165  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcc
Q psy11010         99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERY  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  178 (256)
                      .+...+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.+...+...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677889999999999999999999999999999999998888888778888888889888888899999999999


Q ss_pred             cCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        179 PDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       179 ~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      |+ ++|++++|+.+....+|.++||.+++.+.+. +...+|++.+++.++++++.++ +|++
T Consensus       678 Pt-~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET  736 (742)
T TIGR01299       678 PS-DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDT  736 (742)
T ss_pred             CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence            98 9999999999999999999999999988774 4566777777777776655554 3543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.71  E-value=8.4e-16  Score=132.15  Aligned_cols=181  Identities=14%  Similarity=0.055  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc--CchhHH-HHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV--GYSLPM-FTGFVIMFL  138 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~l-~~~~~~~~~  138 (256)
                      ++..++..++............|.+++++.|.+..+.+++..++.++..++.++.|+++||+  +||+.. +....+..+
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~  334 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  334 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            44444444444444444556788888888899988999999999999999999999999999  555432 222233333


Q ss_pred             HHHHHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHh-hhhhHHhhhhhccCc
Q psy11010        139 STLIFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVL-IGPPFGGIMYQFVGK  215 (256)
Q Consensus       139 ~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~-~g~~i~~~l~~~~g~  215 (256)
                      +.+....  ..+.....++.++.|.+..........++.|.+|+ ++||+++|+.+....+|+. ++|.+.|.+.++.||
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~  413 (452)
T PRK11273        335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  413 (452)
T ss_pred             HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence            3332222  23444444444555554333333334567899998 9999999999988888765 489999999999999


Q ss_pred             hHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        216 TAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      +..|++.++.++++.+........++++
T Consensus       414 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~  441 (452)
T PRK11273        414 DGGFMVMIGGSILAVILLIVVMIGEKRH  441 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            9999988888888776666555444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.70  E-value=3.2e-16  Score=131.69  Aligned_cols=165  Identities=15%  Similarity=0.111  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH-
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST-  140 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~-  140 (256)
                      +.......+.............|.+.++++|.++.+.+.+.....++..++.++.|+++||+|||+.+..+..+..+.. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            3334444444445555555677888778889999999999999999999999999999999999998775554443332 


Q ss_pred             -HHHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHH-HHHHHHHHHhhhhhHHhhhhhccC-c
Q psy11010        141 -LIFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVG-K  215 (256)
Q Consensus       141 -~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~-~~~~~~lg~~~g~~i~~~l~~~~g-~  215 (256)
                       +...+  .++.+.++...++.|++.+...+...+++.|.+|+ ++|+++.++ ++....+|..++|.++|++.++.| |
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~  379 (394)
T TIGR00883       301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT-EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDW  379 (394)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc-cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcc
Confidence             22222  24566667778889999988999999999999998 999999998 456677899999999999999988 8


Q ss_pred             hHHHHHHHHHHH
Q psy11010        216 TAPFLILSALAL  227 (256)
Q Consensus       216 ~~~~~~~~~~~~  227 (256)
                      +..++...+..+
T Consensus       380 ~~~~~~~~~~~l  391 (394)
T TIGR00883       380 YAIGYYLAALAL  391 (394)
T ss_pred             hhHHHHHHHHHH
Confidence            877766665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.70  E-value=4.8e-16  Score=129.72  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=160.0

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhc----CcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLM----GETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTG  132 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~  132 (256)
                      +.+.+..++...+-+.+.++.+..++..|+..+++    .+++++.-+++.+..-.-...+++||++||+ |+|+.++.|
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG   98 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG   98 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            45567778888888999998888888888888888    9999999999999888888999999999996 999999999


Q ss_pred             HHHHHHHHHHHHhhc--hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc-chhhHHHHHHHHHHHHHHhhhhhHHhhh
Q psy11010        133 FVIMFLSTLIFAFGR--TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD-RERGNAMGIALGGLALGVLIGPPFGGIM  209 (256)
Q Consensus       133 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~-~~r~~~~g~~~~~~~lg~~~g~~i~~~l  209 (256)
                      .+++.+|.++++...  +...++++..+.++|.|..-+...+++.|.+|++ .+|-.++++++.+.++|++++|.+.+++
T Consensus        99 ail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~  178 (498)
T COG3104          99 AILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL  178 (498)
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence            999999999998874  7888999999999999999999999999999873 3567788999999999999999999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHhHhhhee
Q psy11010        210 YQFVGKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       210 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      .+.+||+..|...++-..++.+..++..
T Consensus       179 ~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         179 AINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999998888776665544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.69  E-value=1.1e-15  Score=129.13  Aligned_cols=147  Identities=16%  Similarity=0.154  Sum_probs=120.1

Q ss_pred             hHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH-HHHhhchHHHH
Q psy11010         74 MLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL-IFAFGRTYGVL  152 (256)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~-~~~~~~~~~~~  152 (256)
                      ..........|.++.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+ +....++.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (405)
T TIGR00891       252 LYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVL  331 (405)
T ss_pred             HHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHH
Confidence            33334445677788888999999999999999999999999999999999999998888766533332 33344556666


Q ss_pred             HHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHH
Q psy11010        153 FLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLI  221 (256)
Q Consensus       153 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~  221 (256)
                      .+..++.|++.+...+...+++.|.+|+ ++|++++|+.+....+|..++|++.|++.++.| |+..+..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       332 GLGLFFQQMLVQGIWGILPKHLGEYFPT-DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHccchhhHHHHHhhhCCc-chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            6666777777777778888999999998 999999999999999999999999999999988 8776654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.68  E-value=5.6e-15  Score=126.67  Aligned_cols=178  Identities=17%  Similarity=0.138  Sum_probs=153.8

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCch--hHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYS--LPMFTGFV  134 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~l~~~~~  134 (256)
                      ++.+.+...+++.++..-+.+.+..+...|..+++|++..+...+..+..+..++++.++|++.||+|.|  ++++.+.+
T Consensus       278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            3445666677777777777777778888888889999999999999999999999999999999999999  88888877


Q ss_pred             HHHHHHHHHHh--------hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH
Q psy11010        135 IMFLSTLIFAF--------GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG  206 (256)
Q Consensus       135 ~~~~~~~~~~~--------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~  206 (256)
                      ++.+..+...+        .++.+.+++.-++.|+..|..++...++.+|+.|+ ++.+..+|++.......+++||++.
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-g~e~efFgly~i~gk~ss~lGPll~  436 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-GREAEFFGLYAITGKASSWLGPLLF  436 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77555554444        56778899999999999999999999999999998 8999999999999999999999999


Q ss_pred             hhhhhccC-chHHHHHHHHHHHHHHhHhhh
Q psy11010        207 GIMYQFVG-KTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       207 ~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      |.+.+..| .|+.+....++.+++.++.++
T Consensus       437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  437 GLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            99999887 899999888888887666644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.68  E-value=3.4e-15  Score=127.76  Aligned_cols=176  Identities=11%  Similarity=-0.050  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc--Cch-hHHHHHH---HH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV--GYS-LPMFTGF---VI  135 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r-~~l~~~~---~~  135 (256)
                      ++.+.+..+.............|.++.+++|.+..+.+...+.+.++..++.++.|+++||+  ++| .......   .+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~  324 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence            33333434444444444556678888788899999999999999999999999999999999  333 3222211   11


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      ..+...... ..+.....+..+..|++...........+.|.+|+ ++|++++|+.+....+|..++|.+.|++.++.||
T Consensus       325 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~  402 (434)
T PRK11663        325 SVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW  402 (434)
T ss_pred             HHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence            221212222 22333333333444443322233334567899998 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhHhhheeec
Q psy11010        216 TAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      +..|++.+++.++..+..+...++
T Consensus       403 ~~~f~~~~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        403 TGFFVVISIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999988888876666554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.68  E-value=4.7e-15  Score=128.45  Aligned_cols=177  Identities=20%  Similarity=0.173  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      +.+..++++..+.+++..+.....+.++. +..-|+...+++..+..+...+.++++|.++||++||++++.+.++.++.
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~   88 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALV   88 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence            34444555555656666555555555543 45668999999999999999999999999999999999999998877665


Q ss_pred             HHHHHh-----hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        140 TLIFAF-----GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       140 ~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      .+..++     ..+.+.+++..++.|++.+...|+.++++.|.+|+ ++...++++.+...++...+||.++|.+....|
T Consensus        89 ~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-~~L~~A~al~s~~~niar~iGPalgG~Lva~~G  167 (524)
T PF05977_consen   89 ALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-EDLPAANALNSISFNIARIIGPALGGILVAFFG  167 (524)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            544433     23678888999999999999999999999999998 999999999999999999999999999999889


Q ss_pred             chHHHHHHHHHHHHHHhHhhheee
Q psy11010        215 KTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      -.++|.+.++..++..+.+....+
T Consensus       168 ~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  168 AAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc
Confidence            999999888776665544444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.68  E-value=7.3e-15  Score=125.44  Aligned_cols=180  Identities=17%  Similarity=0.140  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh----hcCchhHHHHH-HHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH----RVGYSLPMFTG-FVI  135 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~l~~~-~~~  135 (256)
                      .+..++...+..++.+....+..++|+ +++|.++...+++..+..+...+.+|+.|+++|    |+|||+.++.+ .+.
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            344555555556777777778888875 779999999999999999999999999999999    59999998774 666


Q ss_pred             HHHHHHHHHhhchHH-----------------HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchh--hHHHHHHHHHHH
Q psy11010        136 MFLSTLIFAFGRTYG-----------------VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER--GNAMGIALGGLA  196 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~-----------------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r--~~~~g~~~~~~~  196 (256)
                      .+++.++++++++..                 .++++..+..++.+...++..++++|.+|+ ++|  +.+.++.+.+.+
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~-~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG-DARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-hhHHHHHHHHHHHHHHH
Confidence            666667777765532                 223333445567788888889999999998 654  689999999999


Q ss_pred             HHHhhhhhHHhhh--hhc-------------cCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        197 LGVLIGPPFGGIM--YQF-------------VGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       197 lg~~~g~~i~~~l--~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      +|.++|+.+++..  .+.             .+.+..|++.+++.++..++..+..+|.+.
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            9999999999865  221             157889999999888888888887777653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.67  E-value=9.3e-15  Score=118.94  Aligned_cols=167  Identities=14%  Similarity=0.156  Sum_probs=141.5

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH---h
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA---F  145 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~---~  145 (256)
                      .++.++..... ..+.+.+++.++++..+++++...+..++.+.+++.|++.+|+|+|+-++.|+.++++++.++.   .
T Consensus        22 Ffl~G~~~~l~-diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~  100 (422)
T COG0738          22 FFLWGFITCLN-DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS  100 (422)
T ss_pred             HHHHHHHhhcc-hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33434444333 3444445899999999999999999999999999999999999999999999999999999885   4


Q ss_pred             hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc-------------
Q psy11010        146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF-------------  212 (256)
Q Consensus       146 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~-------------  212 (256)
                      ..++..++++.++.|.|.+...+..+++++...++ +...+-+++.+..+++|++++|++++.+..+             
T Consensus       101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~-~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKP-ESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc-hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            56788899999999999999999999999999998 8888899999999999999999999987762             


Q ss_pred             ------cCchHHHHHHHHHHHHHHhHhhhee
Q psy11010        213 ------VGKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       213 ------~g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                            ..|+++|...+...++..+......
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k  210 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLILLSK  210 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence                  2488888888887777666655544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.67  E-value=2.8e-15  Score=130.36  Aligned_cols=148  Identities=16%  Similarity=0.057  Sum_probs=116.6

Q ss_pred             hhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh--chHHHHHHHHH
Q psy11010         80 EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG--RTYGVLFLARS  157 (256)
Q Consensus        80 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  157 (256)
                      ...+|.++++++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.+.+.+..+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            3567888777899999999999999999999999999999999999999888877666665444332  33333444444


Q ss_pred             HHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHH
Q psy11010        158 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALG  228 (256)
Q Consensus       158 l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  228 (256)
                      +.+.......+...+++.|.+|+ ++|++++|+.+....+|..+||.++|.+.++.||+..+...+....+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDT-EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCH-HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            44443334456667889999998 99999999999999999999999999999999999887665544333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.67  E-value=5.8e-15  Score=127.91  Aligned_cols=161  Identities=17%  Similarity=0.185  Sum_probs=142.8

Q ss_pred             hHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy11010         74 MLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLF  153 (256)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (256)
                      .....+..++|.+..+.+|.++..+|++.+.+++|.+++..+.+++.+|+++++.+..+.++.+++.+..+++++.+..+
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~  311 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLAL  311 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHH
Confidence            33334445677777788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHh
Q psy11010        154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKC  233 (256)
Q Consensus       154 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  233 (256)
                      +..++.|++.........+.+.+..|+ +.|||.++++++....+..+|.++.|.+.+..|.+.++.+.++..+++.++.
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~-~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPD-WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999888777666655554


Q ss_pred             hh
Q psy11010        234 NY  235 (256)
Q Consensus       234 ~~  235 (256)
                      ..
T Consensus       391 ~~  392 (524)
T PF05977_consen  391 LR  392 (524)
T ss_pred             HH
Confidence            43

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09952 shikimate transporter; Provisional

Probab=99.67  E-value=8e-15  Score=125.57  Aligned_cols=162  Identities=16%  Similarity=0.097  Sum_probs=120.8

Q ss_pred             HhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh---h-ch
Q psy11010         73 NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF---G-RT  148 (256)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---~-~~  148 (256)
                      ....+......+.++++++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.+..   . ++
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSI  342 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            3344444556777877888888876666666777778888999999999999999998887766555433322   2 23


Q ss_pred             HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHhhhhhHHhhhhhcc--CchHHHHHHHHH
Q psy11010        149 YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIA-LGGLALGVLIGPPFGGIMYQFV--GKTAPFLILSAL  225 (256)
Q Consensus       149 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~-~~~~~lg~~~g~~i~~~l~~~~--g~~~~~~~~~~~  225 (256)
                      ...+++..++.+++.+...+...++++|.+|+ +.|+++.++. +.+..+|+.++|.+.+++.+..  +|...+...++.
T Consensus       343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~  421 (438)
T PRK09952        343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAG  421 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            44444556677888888888889999999998 9999999995 4455689999999999998854  488888877777


Q ss_pred             HHHHHhHhhh
Q psy11010        226 ALGDGCKCNY  235 (256)
Q Consensus       226 ~~~~~~~~~~  235 (256)
                      .+++.+..+.
T Consensus       422 ~~i~~v~~~~  431 (438)
T PRK09952        422 CLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHH
Confidence            7776655543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.67  E-value=7.3e-15  Score=126.45  Aligned_cols=158  Identities=11%  Similarity=0.019  Sum_probs=122.6

Q ss_pred             hhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh-----hc------hHH
Q psy11010         82 VARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF-----GR------TYG  150 (256)
Q Consensus        82 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-----~~------~~~  150 (256)
                      ..+.+ .++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++..+     .+      +..
T Consensus       306 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (481)
T TIGR00879       306 YSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV  384 (481)
T ss_pred             HHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence            34444 5678988888899999999999999999999999999999999988888877766652     11      222


Q ss_pred             HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHH
Q psy11010        151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG  230 (256)
Q Consensus       151 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  230 (256)
                      .+....++.+.......+....++.|.+|+ ++|++++++.+....+|.+++|.+.+.+.++.+|++.|++.++++++..
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  463 (481)
T TIGR00879       385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPL-SLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGL  463 (481)
T ss_pred             HHHHHHHHHHHHHccccCeehhhhhccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHH
Confidence            222222222222223345566778999998 9999999999999999999999999999999999999999998888877


Q ss_pred             hHhhheeecCC
Q psy11010        231 CKCNYTIVQKS  241 (256)
Q Consensus       231 ~~~~~~~~~~~  241 (256)
                      +..++..++.+
T Consensus       464 i~~~~~~~~~~  474 (481)
T TIGR00879       464 IFVYFFLPETK  474 (481)
T ss_pred             HHHheecccCC
Confidence            77766665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.66  E-value=1.8e-14  Score=121.32  Aligned_cols=153  Identities=12%  Similarity=0.095  Sum_probs=127.1

Q ss_pred             hhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy11010         76 LTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLA  155 (256)
Q Consensus        76 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (256)
                      ........+.+. ++.|.+..+.|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++.
T Consensus       221 ~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (382)
T PRK11128        221 HAAYYGFSAIYW-QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVI  299 (382)
T ss_pred             hHhHHHHHHHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            333344556665 5689999999999999999999999999999999999999999999999988888888899988899


Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHH-HHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhH
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIAL-GGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~-~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                      .++.|++.+...+....++.+. ++ +++++..+.++ ....+|..+||.++|.+.|..|+ ..|+..+++.+++.++
T Consensus       300 ~~l~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        300 QILHCGTFTVCHLAAMRYIAAR-PG-SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999888888888887 44 67788999875 56678889999999999999887 4677666666654433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.6e-15  Score=124.10  Aligned_cols=181  Identities=16%  Similarity=0.043  Sum_probs=148.5

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc--CchhHHHH-HHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV--GYSLPMFT-GFV  134 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~l~~-~~~  134 (256)
                      +.+.++.++++.++.....+.+....|.|+.|..|.+...+++..+.+-++...+.+++|+++||+  |||....+ ..+
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            455678888888888888988999999999999999999999999999999999999999999996  67766544 344


Q ss_pred             HHHHHHHHHHhhc--hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHhhhhhHHhhhhh
Q psy11010        135 IMFLSTLIFAFGR--TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL-GVLIGPPFGGIMYQ  211 (256)
Q Consensus       135 ~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l-g~~~g~~i~~~l~~  211 (256)
                      ...++.+..-+++  |+....++.++.|+..-+-.-.......|..|+ +.-|++.|+.+.+..+ |...+....+++.|
T Consensus       330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-KAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-hhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            4444444555554  457777788888887777766667788899998 9999999999999999 99999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        212 FVGKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       212 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      .+||...|.+..+.++++.++.......
T Consensus       409 ~~gW~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         409 TWGWDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998888877766665554443

>TIGR00897 2A0118 polyol permease family

Probab=99.66  E-value=1.4e-14  Score=122.69  Aligned_cols=166  Identities=17%  Similarity=0.188  Sum_probs=124.7

Q ss_pred             HHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH-HHHHHHHHHHHHHH-
Q psy11010         67 IALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF-TGFVIMFLSTLIFA-  144 (256)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~-~~~~~~~~~~~~~~-  144 (256)
                      +..+.............|.++ +++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..++..+.+. 
T Consensus       229 ~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       229 MVRIINTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            333333444444455667776 568999999999999999999999999999999999888764 33333333322222 


Q ss_pred             ----hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        145 ----FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       145 ----~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                          ..++.+..++..++.|++.+...+ ....+.|.. + ++|++++|+.+....+|..++|.+++.+.+..||...++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~  384 (402)
T TIGR00897       308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-P-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVW  384 (402)
T ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence                124566667778888888877654 355666754 4 689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhhe
Q psy11010        221 ILSALALGDGCKCNYT  236 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~~  236 (256)
                      +.+++.++..++..+.
T Consensus       385 ~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       385 IFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9998888877666553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=99.66  E-value=1.3e-14  Score=125.50  Aligned_cols=146  Identities=16%  Similarity=0.123  Sum_probs=118.4

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh--
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG--  146 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~--  146 (256)
                      .++............|.+.+..+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.+++.++..+.  
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  349 (471)
T PRK10504        270 SFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL  349 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc
Confidence            333333444444456667666789999999999999999999999999999999999999999888888776665543  


Q ss_pred             -chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        147 -RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       147 -~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                       ++.+.+.+..++.|++.+...+....++.+.+|+ ++++.++++.++...+|..+|+.++|.+.+..|+
T Consensus       350 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        350 LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD-NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             3334445567788899998888889999999998 9999999999999999999999999998877655

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.66  E-value=3.7e-15  Score=127.45  Aligned_cols=171  Identities=15%  Similarity=0.125  Sum_probs=133.5

Q ss_pred             HHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh----cCch-hHHHHHHHHHHHHHHHHHh
Q psy11010         71 LDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR----VGYS-LPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r-~~l~~~~~~~~~~~~~~~~  145 (256)
                      ..+.......+.+++++.+++|+++.++|++.++..+..++..|+.|+++||    +||| +.++.+.+..+++.+++..
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~   89 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT   89 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence            3444455555667777888999999999999999999999999999999998    6774 4667787888877777765


Q ss_pred             hch------HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh-------c
Q psy11010        146 GRT------YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ-------F  212 (256)
Q Consensus       146 ~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~-------~  212 (256)
                      .++      ...+++.+++.+++.+....+..++..|..+++++|++..++.+.+..+|..+++.+.+.+..       .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~  169 (437)
T TIGR00792        90 TPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDK  169 (437)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            542      455666778889888888888889999987433899999999988888888777766655542       4


Q ss_pred             cCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        213 VGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .+|++.+.+.+++.++..++.++..+|++
T Consensus       170 ~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       170 FGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            57999999999888887766666666544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2.6e-14  Score=117.77  Aligned_cols=172  Identities=18%  Similarity=0.138  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF  143 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~  143 (256)
                      ...+..++...+.+...++..+++++..|.+.+.++++.-++.++..++..+.|++.|| +.|+.+.....+.++..+.+
T Consensus       215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l  293 (394)
T COG2814         215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLAL  293 (394)
T ss_pred             HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHH
Confidence            33333333334444444566667888899999999999999999999999999999999 99999888877777777766


Q ss_pred             Hh-hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHH
Q psy11010        144 AF-GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLIL  222 (256)
Q Consensus       144 ~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~  222 (256)
                      .+ .++.+..++..++.|+..+......+..+++.. + +.++.+.+++....++|..+|..++|.+.+++|+....++.
T Consensus       294 ~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p-~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~  371 (394)
T COG2814         294 TFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-P-DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVG  371 (394)
T ss_pred             HHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            55 455556666777788888777777777777844 4 79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhheee
Q psy11010        223 SALALGDGCKCNYTIV  238 (256)
Q Consensus       223 ~~~~~~~~~~~~~~~~  238 (256)
                      +++.+++.++.++..+
T Consensus       372 a~l~~~a~~~~~~~~~  387 (394)
T COG2814         372 AALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999888777665443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.64  E-value=3.7e-18  Score=146.63  Aligned_cols=145  Identities=18%  Similarity=0.238  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHhhhhchhhhhhh
Q psy11010         96 KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR---TYGVLFLARSLQGIGSSCSSVSGMG  172 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~  172 (256)
                      .+.++..+...++..++++++|+++||+|||+.++.+.++..++.++.++++   +++.+.++|++.|++.|...+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             hhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc---CchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        173 MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV---GKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       173 ~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      ++.|..|+ ++|++...+.+....+|..++..++..+.+..   +||..+++..+++++..+.. +..||.|+
T Consensus       126 ~~~E~~~~-~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~  196 (451)
T PF00083_consen  126 YISEIAPP-KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPR  196 (451)
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999998 99999999999999999998888876554433   49999998888887754443 55666553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15075 citrate-proton symporter; Provisional

Probab=99.63  E-value=2.8e-14  Score=122.10  Aligned_cols=144  Identities=11%  Similarity=0.074  Sum_probs=107.5

Q ss_pred             HHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH-HH---Hhhc
Q psy11010         72 DNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL-IF---AFGR  147 (256)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~-~~---~~~~  147 (256)
                      .......+....|.++++.+|.+..+.++....+.++..++.++.|+++||+|||++++.+.++.++..+ ..   ...+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3444445556678888777899998999999999999999999999999999999998876554433221 11   1223


Q ss_pred             hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        148 TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIA-LGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       148 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~-~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      +...+.+..++.|++.+...+....++.|.+|+ +.|+++.++. +.+..+++.++|.+.+++.++.|+.
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPA-EVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC-CccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            444444445666777777777777889999998 9999999995 4445556788999999999988864

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.63  E-value=1.5e-14  Score=122.32  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=127.2

Q ss_pred             hHHHHHhhh---cCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q psy11010         83 ARENRHKYL---MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQ  159 (256)
Q Consensus        83 ~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (256)
                      .+.++.+.+   +.+....|.+.++..+...++.+..|++.||+|+|+.+..+.++.++...+...+++.+.+++.+++.
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~  317 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLH  317 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            444544433   44556789999999999999999999999999999999999998888888877888888888889999


Q ss_pred             HhhhhchhhhhhhhhhhcccCcchhhHHHHH-HHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~-~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      |++..........+..+..++ +.+++..+. ++....+|.++++.++|++.+..||+.+|.+.+++.++..++..+
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~-~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       318 AFEVPFLLVGCFKYITSQFDV-RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhCCc-ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            998877666667778888887 888887766 678899999999999999999999999999999888877665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.63  E-value=5.6e-15  Score=127.11  Aligned_cols=167  Identities=15%  Similarity=0.156  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc--CchhHHHH--HHHHHHH
Q psy11010         63 VIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV--GYSLPMFT--GFVIMFL  138 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~l~~--~~~~~~~  138 (256)
                      ....+..++...........++.+. ++.|.+..+.+++.++..++..+++++.|+++||.  ++|+....  +.++.++
T Consensus       244 ~~~~~~~~l~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l  322 (455)
T TIGR00892       244 LVYLSGNVIMFLGFFAPIIFLVPYA-KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGL  322 (455)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence            3333344444444444445567775 55799999999999999999999999999999984  33433333  3344445


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc-CchH
Q psy11010        139 STLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV-GKTA  217 (256)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~-g~~~  217 (256)
                      +.++..+.++++.+++.+++.|++.+...+...+++.|.+|+ +++++++|+++....+|.++||.++|.+.+.. +|++
T Consensus       323 ~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  401 (455)
T TIGR00892       323 THLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKY  401 (455)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcch
Confidence            555666778888888899999999999999999999999998 99999999999999999999999999999877 4999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11010        218 PFLILSALALGDGC  231 (256)
Q Consensus       218 ~~~~~~~~~~~~~~  231 (256)
                      .|++.+++.+++.+
T Consensus       402 ~f~~~~~~~li~~~  415 (455)
T TIGR00892       402 IFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHhhHHHHHHHH
Confidence            99988877766554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.62  E-value=1.4e-14  Score=120.57  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=118.8

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT-YGVLFLARSLQ  159 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  159 (256)
                      ...|.+.++.+|.++.+.+++.+...++..++.++.+++.||++||+.+..+..+.+++.++..+.++ .+.+++..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            45566666668999999999999999999999999999999999999999888888888777777664 77788889999


Q ss_pred             HhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      |++.+...+...+++.|.+|+ ++|+++.|+.+....+|..++|.++|++.++.|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPA-ELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999998 999999999999999999999999999988654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.62  E-value=1.5e-14  Score=123.98  Aligned_cols=164  Identities=13%  Similarity=0.037  Sum_probs=114.8

Q ss_pred             hhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH---HHHHHHHh--hchHHH
Q psy11010         77 TTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF---LSTLIFAF--GRTYGV  151 (256)
Q Consensus        77 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~---~~~~~~~~--~~~~~~  151 (256)
                      .......|.++++..|.++.+.++......++..++.++.|+++||+++++....+..+..   ++.+....  ..+.+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            3444567888877789999999999999999999999999999999975432223322221   12222222  223333


Q ss_pred             HHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHH-HhhhhhHHhhhhhccCchHHHHHHHHHHHHHH
Q psy11010        152 LFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALG-VLIGPPFGGIMYQFVGKTAPFLILSALALGDG  230 (256)
Q Consensus       152 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg-~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  230 (256)
                      ..+..++.|++.............|.+|+ ++|++++|+.+....+| ..++|.+.|.+.++.||...|++.+++.+++.
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~  426 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  426 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcCh-hheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHH
Confidence            33334445544322222223567899998 99999999998887776 46899999999999999999998888887777


Q ss_pred             hHhhheeecCC
Q psy11010        231 CKCNYTIVQKS  241 (256)
Q Consensus       231 ~~~~~~~~~~~  241 (256)
                      +..++..++++
T Consensus       427 ~~~~~~~~~~~  437 (438)
T TIGR00712       427 ILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHhhcc
Confidence            77777666654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1.9e-14  Score=117.74  Aligned_cols=179  Identities=18%  Similarity=0.129  Sum_probs=143.0

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      .++.+.+..+++.+|-....   +...+|.|++++++.++.+.|.+...+.+...+..+.+|+++||+|.++++......
T Consensus       217 ~~~~W~lsllY~~tFG~Fvg---fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~  293 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVG---FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG  293 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence            34444555555555544444   445667788999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhh-------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhh
Q psy11010        136 MFLSTLIFAFG-------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGI  208 (256)
Q Consensus       136 ~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~  208 (256)
                      ++++..+..+.       .+....++..+..++..|........++..++|  ++-|...|+.....++|++.-|...+.
T Consensus       294 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~--~~~G~v~G~vga~G~lGGf~lp~~~g~  371 (417)
T COG2223         294 MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP--KETGAVTGIVGAIGGLGGFFLPLAFGV  371 (417)
T ss_pred             HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH--hhhhHHHHHHHHhccccccchhHHHHH
Confidence            88888877764       344445555555666666666666788889997  688999999999999999999999999


Q ss_pred             hhhccC-chHHHHHHHHHHHHHHhHhhheeec
Q psy11010        209 MYQFVG-KTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       209 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      ..+..| +...|++...+.+++.+..+..+.+
T Consensus       372 ~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         372 SLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999888 9999999999988888877665544

>KOG0252|consensus

Probab=99.61  E-value=1.7e-15  Score=124.78  Aligned_cols=185  Identities=14%  Similarity=0.122  Sum_probs=142.2

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhc-------CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchh
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLM-------GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSL  127 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~  127 (256)
                      +++....+.+..+..+.+.++...+..+.+.+-...+|       .++...+.+..+..+|.+++++++|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            34555666777778888999998887775554322222       45667889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc-------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHh
Q psy11010        128 PMFTGFVIMFLSTLIFAFGR-------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVL  200 (256)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~  200 (256)
                      ++...+++++++.+++++..       -..++...|++.|+|.|+-+|...+..+|.... +.||...+..-...++|..
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK-KTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhh-ccccceeEEEEEecchhHh
Confidence            99999999999999777632       356788899999999999999999999999997 9999998887777777766


Q ss_pred             hhhhHHhhhhhc-------------c--CchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        201 IGPPFGGIMYQF-------------V--GKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       201 ~g~~i~~~l~~~-------------~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .|.+++-.+...             .  =||..+.+.++++++....-+ ..||++
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~  249 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETA  249 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcch
Confidence            666665443321             1  289888888777777544433 344443

>TIGR00895 2A0115 benzoate transport

Probab=99.61  E-value=4e-14  Score=119.19  Aligned_cols=138  Identities=17%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             HHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchH
Q psy11010         70 VLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTY  149 (256)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~  149 (256)
                      +.............| ++.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+....+......++....++.
T Consensus       260 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (398)
T TIGR00895       260 FMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSP  338 (398)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCH
Confidence            333334444444555 4467789999999999999999999999999999999999955544444333333333335566


Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhh
Q psy11010        150 GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM  209 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l  209 (256)
                      +..++..++.|++.+...+...+++.|.+|+ ++|++++|+.+....+|..+||.++|++
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPT-AIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            7777888899999999999999999999998 9999999999999999999999999876

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=5.6e-14  Score=119.61  Aligned_cols=167  Identities=13%  Similarity=0.011  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCc-hhHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGY-SLPMFTGFVIMFLSTLIF  143 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~l~~~~~~~~~~~~~~  143 (256)
                      +++..+..........|.++.++.+++|.+..++|++.+++.++..++++++|+++||+|+ |+++..+.++..+...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3445555666677777888888889999999999999999999999999999999999965 778888888888888888


Q ss_pred             HhhchHHHHHHHHHHHHhhhhchhhhhhhhhh--------hcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        144 AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLA--------ERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       144 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~--------~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      .+.++++.+++.+++.|++.+...+...++..        |.... ..|.+..|      .+|..++|.+++.+....+|
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~-~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD-FPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc-CCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence            88889999999999999987777666555432        22221 23444444      36888888888877332234


Q ss_pred             hHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        216 TAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      . +|++.+++.++..+. .+..||+
T Consensus       160 ~-~f~~~~~~~~~~~~~-~~~~~e~  182 (418)
T TIGR00889       160 I-QLYITAGSSALLGVF-ALTLPDI  182 (418)
T ss_pred             H-HHHHHHHHHHHHHHH-HhcCCCC
Confidence            4 456666666655544 3445554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.60  E-value=4.6e-14  Score=120.37  Aligned_cols=139  Identities=17%  Similarity=0.114  Sum_probs=104.5

Q ss_pred             hhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q psy11010         80 EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQ  159 (256)
Q Consensus        80 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (256)
                      ...+|.++. +.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+..++.
T Consensus       251 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        251 FGLLPTYLA-GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            345666654 4688888999999999999999999999999999999999888877766655444322211122222333


Q ss_pred             Hh--hhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        160 GI--GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       160 G~--~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      |+  +.....+..+.++.|.+|+ ++|++++|+......+|..++|.+.+++.++.|+....+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPL-EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcH-HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            33  2223345566788999998 999999999999999999999999999999988665433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.60  E-value=2e-13  Score=111.54  Aligned_cols=161  Identities=11%  Similarity=-0.011  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHh--hhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHK--YLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL  138 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~  138 (256)
                      .+....+..++.......+....+.|+.+  .+|.++.+.++..+.+..+..+++.+.+++.||+|+|+.+.++.++.++
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            33334444444444455556667778764  3689999999999999999999999999999999999998888887777


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHH
Q psy11010        139 STLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP  218 (256)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~  218 (256)
                      +.++....++... ..+.++.|++.+..+|...+...+.+|+  +.+++.++. ....+|+.++|++.|.+.|..|.+.+
T Consensus       221 ~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~--~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a  296 (310)
T TIGR01272       221 LSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGR--HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLA  296 (310)
T ss_pred             HHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHH
Confidence            7766655554333 3456689999999999999999999874  556677775 56678999999999999999999888


Q ss_pred             HHHHHHH
Q psy11010        219 FLILSAL  225 (256)
Q Consensus       219 ~~~~~~~  225 (256)
                      |++..+.
T Consensus       297 ~~v~~~~  303 (310)
T TIGR01272       297 FALPVPC  303 (310)
T ss_pred             HHHHHHH
Confidence            8754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.60  E-value=2.8e-14  Score=122.08  Aligned_cols=149  Identities=17%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      .++..++............+.+.+..++ ++...+++.++..++..++.+++++++||+|+|+++..+.++.+++.++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  305 (437)
T TIGR00792       227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF  305 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444445 456778888888999999999999999999999999999888888877766


Q ss_pred             hh-chHHHHHHHHHHHHhhhhchhhhhhhhhhhccc-------CcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        145 FG-RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYP-------DDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       145 ~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      +. ++.+.+++..++.|++.+...+...++++|..+       + +++|.+.|+++....+|..+++.+.|++.+..||
T Consensus       306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       306 FAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGV-RAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            54 355666777888999999999998999998865       3 5679999999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.60  E-value=1.1e-13  Score=116.85  Aligned_cols=152  Identities=15%  Similarity=0.056  Sum_probs=116.0

Q ss_pred             hhhhHHHHHhhhcCcchhHHHHHHHHHH-HHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh------hchHHHH
Q psy11010         80 EDVARENRHKYLMGETKAVGVMFGSKAF-VQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF------GRTYGVL  152 (256)
Q Consensus        80 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~------~~~~~~~  152 (256)
                      ....+.++ +|.|.+++++|++.....+ ...++..+.|++.||+|+|+.+..+.++.++..+....      ..+...+
T Consensus       228 ~~~~~~~l-~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       228 FGLSKLYL-VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHhhHHH-HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            34556665 4579999999999988865 56677889999999999999998877665333322211      1233344


Q ss_pred             HHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhH
Q psy11010        153 FLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       153 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                      +....+.+++.+...+...+.+.+..++++++++.+++.+...++|..+||.++|.+.+..||+..|++.+++.+++.++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            45556667778888888888887877632788999999999999999999999999999999999999888777665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.60  E-value=8.6e-14  Score=120.48  Aligned_cols=158  Identities=14%  Similarity=0.052  Sum_probs=118.8

Q ss_pred             hHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc--h-HH-HHHHHHHH
Q psy11010         83 ARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR--T-YG-VLFLARSL  158 (256)
Q Consensus        83 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~l  158 (256)
                      .|.+ .++.|.+....++......+...++.++.|+++||+|||++++.+.++.+++.+++....  + .. ....+.++
T Consensus       294 ~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~  372 (479)
T PRK10077        294 APEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF  372 (479)
T ss_pred             HHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            3443 466788877777787888889999999999999999999999999999888877665421  1 11 22334444


Q ss_pred             HHhhhhc-hhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhh------hhhccCchHHHHHHHHHHHHHHh
Q psy11010        159 QGIGSSC-SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGI------MYQFVGKTAPFLILSALALGDGC  231 (256)
Q Consensus       159 ~G~~~g~-~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~------l~~~~g~~~~~~~~~~~~~~~~~  231 (256)
                      .+++.+. ..+...++++|.+|+ ++|++++|+.+....+|.++++.+.+.      +.+..+|++.|++.+++++++.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (479)
T PRK10077        373 YVAAFAMSWGPVCWVLLSEIFPN-AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL  451 (479)
T ss_pred             HHHHHhccccchhHHHhHhhCCh-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence            5554443 336678999999998 999999999999999988888666554      34577899999998888887777


Q ss_pred             HhhheeecCCC
Q psy11010        232 KCNYTIVQKSS  242 (256)
Q Consensus       232 ~~~~~~~~~~~  242 (256)
                      +.+++.||.++
T Consensus       452 ~~~~~~~e~~~  462 (479)
T PRK10077        452 FMWKFVPETKG  462 (479)
T ss_pred             HHHhccccCCC
Confidence            76666665443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.59  E-value=1.7e-13  Score=119.00  Aligned_cols=155  Identities=11%  Similarity=0.029  Sum_probs=122.3

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHH-HHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH---HHhh-chHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFG-SKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI---FAFG-RTYGVLFLA  155 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~---~~~~-~~~~~~~~~  155 (256)
                      ...++++.+++|.+..+.+++.. ...++.+++.++.|+++||+|+|+.+..+.++.++..+.   .+.. ++...+.+.
T Consensus       243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~  322 (491)
T PRK11010        243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA  322 (491)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            34556666778999999999985 566899999999999999999988877766555544332   2232 344445555


Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      .++..++.|...+...++..+..++ +.+++..++.+....+|..+++.+.|++.+..||+..|.+.+++++++.+...+
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~-~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNK-SFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666677778999999998 899999999999999999999999999999999999999988888887666655


Q ss_pred             e
Q psy11010        236 T  236 (256)
Q Consensus       236 ~  236 (256)
                      .
T Consensus       402 ~  402 (491)
T PRK11010        402 C  402 (491)
T ss_pred             H
Confidence            4

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.59  E-value=2.8e-14  Score=119.22  Aligned_cols=157  Identities=15%  Similarity=0.062  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCc-hhHHH-HHH-HHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGY-SLPMF-TGF-VIMFL  138 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~l~-~~~-~~~~~  138 (256)
                      +..+.+..+.............+.++.+++|.++.+.+++.+...++..++.++.|++.||..+ |+... ... ....+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  297 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV  297 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            3334444444444444555667778878889999999999999999999999999999998643 33222 211 22222


Q ss_pred             HHHHHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        139 STLIFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       139 ~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      +......  ..+.....+..++.|+......+....++.|.+|+ ++|+++.|+.+....+|..++|.+.|.+.++.||+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       298 SLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             HHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            2222222  23445555666677776666666667889999998 99999999999999999999999999999999998


Q ss_pred             HHH
Q psy11010        217 APF  219 (256)
Q Consensus       217 ~~~  219 (256)
                      +.|
T Consensus       377 ~~f  379 (379)
T TIGR00881       377 GAF  379 (379)
T ss_pred             ccC
Confidence            754

>KOG2325|consensus

Probab=99.59  E-value=1.2e-13  Score=116.47  Aligned_cols=187  Identities=17%  Similarity=0.262  Sum_probs=151.3

Q ss_pred             ccccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHh-hhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCc-hhHHHH
Q psy11010         54 SRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHK-YLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGY-SLPMFT  131 (256)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~l~~  131 (256)
                      .++.+|+.+.+..+..++.....+.+.+-.-+|+++ |.+.+.+..|++.++..++.+++++.+|+++.|.+. |+.++.
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~  107 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV  107 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence            345678888888899999888888888776666544 477788899999999999999999999999999986 888899


Q ss_pred             HHHHHHHHHHHH-Hh---hc-hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH
Q psy11010        132 GFVIMFLSTLIF-AF---GR-TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG  206 (256)
Q Consensus       132 ~~~~~~~~~~~~-~~---~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~  206 (256)
                      +.++.+++.++. +.   .+ ..+.++++|++.|+|.|.... .-+|+++.... ++|.++++....+..+|.++||.+.
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~-~dR~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV-LRAYIADASTV-EDRPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCc-cchHHHHHHhhhHHHHHHHHhHHHH
Confidence            999999999888 33   23 678899999999999876544 58899998776 8999999999888888888888887


Q ss_pred             hhhhhc------------c-CchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        207 GIMYQF------------V-GKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       207 ~~l~~~------------~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      ..+..-            + -+..+-|+.+++.++..+++.+..+|..+
T Consensus       186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            654321            1 15667788888888888888777766544

>KOG0569|consensus

Probab=99.59  E-value=1.3e-13  Score=117.02  Aligned_cols=143  Identities=16%  Similarity=0.165  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHhhhhchhhhhhhhh
Q psy11010         98 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF---GRTYGVLFLARSLQGIGSSCSSVSGMGML  174 (256)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  174 (256)
                      .+.+++++.+|.++|+.+.|+++||+|||..+.++.++..++.++..+   .+++..++++|++.|+..|......+-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            466788999999999999999999999999999998888888776665   56788999999999999999999999999


Q ss_pred             hhcccCcchhhHHHHHHHHHHHHHHhhhhhHHh--hhhhccCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        175 AERYPDDRERGNAMGIALGGLALGVLIGPPFGG--IMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       175 ~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      .|..|+ +.||....+.+.+..+|..++..++.  .+-+...|++.+....+++++..++. .+.||+|+
T Consensus       142 ~E~sP~-~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk  209 (485)
T KOG0569|consen  142 TEISPK-NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPK  209 (485)
T ss_pred             hhcChh-hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcc
Confidence            999998 99999999999999999999977764  23344569999999988888865554 44666665

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.59  E-value=6.6e-14  Score=119.00  Aligned_cols=163  Identities=11%  Similarity=0.073  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHhHhhhchhhhHHHHHh-hhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhH-HHHHHHHHHHHH
Q psy11010         63 VIVAIALVLDNMLLTTVEDVARENRHK-YLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLP-MFTGFVIMFLST  140 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-l~~~~~~~~~~~  140 (256)
                      +...+..+........+...+|.++++ ..+.+..+.+...+...++..++.++.|+++||+++|+. +....++..++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~  324 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence            334444444445555566678888755 246677888999999999999999999999999997774 444444444444


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHH
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPF  219 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~  219 (256)
                      ++....++....+.+..+.++|.....+.......|.+|+ ++|++++|+.+....+|.+++|.+.+.+.+..| |++.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~  403 (412)
T TIGR02332       325 LLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-QARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL  403 (412)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-HHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence            3332333322222222333333333334444555678898 999999999999999999999999999999875 99998


Q ss_pred             HHHHHHH
Q psy11010        220 LILSALA  226 (256)
Q Consensus       220 ~~~~~~~  226 (256)
                      ++.+++.
T Consensus       404 ~~~~~~~  410 (412)
T TIGR02332       404 WFVAALL  410 (412)
T ss_pred             HHHHHHH
Confidence            8766654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.59  E-value=1.4e-13  Score=119.85  Aligned_cols=138  Identities=17%  Similarity=0.091  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHhhhhchhhhhhhhhhhcc
Q psy11010        103 GSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR----TYGVLFLARSLQGIGSSCSSVSGMGMLAERY  178 (256)
Q Consensus       103 ~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  178 (256)
                      .+..++..++.++.++++||+|||++++.+.++.+++.++.++..    +...+....+...++.....+....+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            344456667888899999999999999888877777766555422    1111111111122222234455677889999


Q ss_pred             cCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc----------cCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        179 PDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF----------VGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       179 ~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      |+ +.|+++.|+.+....+|.+++|.+.+.+.+.          .++...|++.+++.+++.+. .++.||++.
T Consensus       422 p~-~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~  493 (502)
T TIGR00887       422 PT-RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKG  493 (502)
T ss_pred             ch-hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCC
Confidence            98 9999999999999999999999999998873          34566788888777776554 455666544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.59  E-value=1.5e-13  Score=116.65  Aligned_cols=158  Identities=15%  Similarity=-0.055  Sum_probs=121.4

Q ss_pred             hhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh-----chHHHHHH
Q psy11010         80 EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-----RTYGVLFL  154 (256)
Q Consensus        80 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~  154 (256)
                      ....|.+..+++|.++.+.++......++..++.++.|+++||+++|+.+..+.++.+++.++..+.     .+.+.+++
T Consensus       235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK15402        235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA  314 (406)
T ss_pred             HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            3445666677889999999998888888899999999999999999999999888887777766542     34566677


Q ss_pred             HHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhh
Q psy11010        155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       155 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  234 (256)
                      ..++.|++.+...+........ .++ ++||+..+.++....+|..+|+.+++.+.+..++....+..++..++..+...
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~-~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLF-SSD-VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVR  392 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhh-hcc-ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHH
Confidence            8888999998887776665543 344 89999999999999999999999999999887766555555544444434333


Q ss_pred             heeec
Q psy11010        235 YTIVQ  239 (256)
Q Consensus       235 ~~~~~  239 (256)
                      ...++
T Consensus       393 ~~~~~  397 (406)
T PRK15402        393 IFLKD  397 (406)
T ss_pred             HHhcc
Confidence            33333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.59  E-value=2.5e-13  Score=114.38  Aligned_cols=172  Identities=17%  Similarity=0.213  Sum_probs=133.5

Q ss_pred             HHHHHHHHhHhhhchhhhHHHHHhhhc-CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         66 AIALVLDNMLLTTVEDVARENRHKYLM-GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      .+..++.+.....+..+.+.|++ +.| .+....+.+.++..+..++.-.+.+++..|+|.|+++.++.+..++=..+++
T Consensus       213 ll~~~l~~~~~~~~~~f~~~yl~-~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  213 LLAAFLIGISHAAYYTFFSIYLQ-ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555556666764 455 7777888888999999999999999999999999999999999999999988


Q ss_pred             hh-chHHHHHH----HHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHH-HHHHHHhhhhhHHhhhhhccCch--
Q psy11010        145 FG-RTYGVLFL----ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQFVGKT--  216 (256)
Q Consensus       145 ~~-~~~~~~~~----~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~-~~~lg~~~g~~i~~~l~~~~g~~--  216 (256)
                      .. ++.+...+    ...+.|+..+........++.+..|+ +.|+++.++++. ..++|..+|..++|++.|+.|-+  
T Consensus       292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence            87 45444333    34569999999999999999999998 999999999765 57899999999999999987644  


Q ss_pred             ----HHHHHHHHHHHHHHhHhhheeec
Q psy11010        217 ----APFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       217 ----~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                          ..+.+.+++.++..++.+++.+|
T Consensus       371 ~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  371 FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                45556666666655555554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.58  E-value=2.1e-13  Score=116.63  Aligned_cols=160  Identities=16%  Similarity=0.068  Sum_probs=105.8

Q ss_pred             hHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH--h--hchH
Q psy11010         74 MLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA--F--GRTY  149 (256)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~--~--~~~~  149 (256)
                      ...+.....+|.++.+++|.+..+.+...++..++..+++++.|+++||+|||+.+..+.++.++..+...  .  .++.
T Consensus       257 ~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (432)
T PRK10406        257 LCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP  336 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            33444556678888788899988999999998888899999999999999999988776654433332111  1  2233


Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHH-HHHhhhhhHHhhhhhccC-chHHHHHHHHHHH
Q psy11010        150 GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLA-LGVLIGPPFGGIMYQFVG-KTAPFLILSALAL  227 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~-lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~  227 (256)
                      ...+....+.+++.+...+....+++|.+|+ +.|++++|+.+...+ +.+...|.+.+.+ +..| |...+++.++..+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        337 YAAFGLVMCALLIVSFYTSISGILKAEMFPA-QVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence            3222222223333334445567889999998 999999999766544 3344577877755 4445 6556666656666


Q ss_pred             HHHhHhhh
Q psy11010        228 GDGCKCNY  235 (256)
Q Consensus       228 ~~~~~~~~  235 (256)
                      +..+..++
T Consensus       415 i~~~~~~~  422 (432)
T PRK10406        415 VAFLVSLM  422 (432)
T ss_pred             HHHHHHHH
Confidence            65554444

>PRK10054 putative transporter; Provisional

Probab=99.58  E-value=6.5e-14  Score=118.41  Aligned_cols=149  Identities=13%  Similarity=0.079  Sum_probs=122.4

Q ss_pred             hhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHhhhhchhh
Q psy11010         90 YLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-RTYGVLFLARSLQGIGSSCSSV  168 (256)
Q Consensus        90 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~  168 (256)
                      +.+.+....+++.+...+.....+++.|++.||+++|+.+..+.++..++.+...+. ++.+.+.+..++.|+|.+...|
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  317 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP  317 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence            456667778888888888888888999999999999999999988888888777654 5666677788899999988888


Q ss_pred             hhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        169 SGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       169 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ...+++.+..|+ +.|+++.+..+ ...+|..+||.++|.+.|+.|....|++.+....+..++..+..+++
T Consensus       318 ~~~~~~~~~~p~-~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (395)
T PRK10054        318 GEYMLIDHIAPP-GMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRAR  387 (395)
T ss_pred             hHHHHHHHhCCc-ccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccC
Confidence            888999999998 99999988765 56689999999999999999998888887777666555555433333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.58  E-value=2e-13  Score=114.91  Aligned_cols=153  Identities=16%  Similarity=0.059  Sum_probs=113.9

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF-GRTYGVLFLARSLQ  159 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  159 (256)
                      ...++++.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  299 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFIC  299 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34455666778999999999999999999999999999999999999999888888887765543 44555556666666


Q ss_pred             Hhhhhchhhhhhh-hhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc-cCchHHHHHHHHHHHHHHhHhhhe
Q psy11010        160 GIGSSCSSVSGMG-MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF-VGKTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       160 G~~~g~~~~~~~~-~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      +++.....+.... ...+..++ +.++.+.  .+....+|..+||.++|++.+. .+|++.+.+.+++.++........
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        300 CAGLFALSAPLQILLLQNAKGG-ELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHhhhHHHHHHHHHhCCcc-hHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            7766555554443 34444444 5565543  4667889999999999999985 679999998877766655544443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.58  E-value=3.2e-13  Score=108.63  Aligned_cols=174  Identities=19%  Similarity=0.186  Sum_probs=148.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL  138 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~  138 (256)
                      +..+..+.+..+--.-..+.+.|+++.. .+++|.|.+.+|++.++..++..+.+++..++..|+|.++.+..++++.++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~I-r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~   89 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEI-RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAA   89 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence            3333333333333344555666777664 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc-CchH
Q psy11010        139 STLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV-GKTA  217 (256)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~-g~~~  217 (256)
                      +.++-... +...++.+..+.|.|.+......++++.+.||  |+-+..+|+|.....+|+.+++.+.-.+.++. |||.
T Consensus        90 G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp--k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          90 GILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP--KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc--cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            99998877 67788999999999999999999999999998  68999999999999999999999999988887 7999


Q ss_pred             HHHHHHHHHHHHHhHhhhe
Q psy11010        218 PFLILSALALGDGCKCNYT  236 (256)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~  236 (256)
                      ...+-+.++++.+++.+..
T Consensus       167 aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         167 ALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999988866654443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.57  E-value=3.3e-13  Score=113.91  Aligned_cols=176  Identities=14%  Similarity=0.171  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHH--HHHHHHHHHHhhhHHHH-hhhhcCchhHHHHHHHHH-H
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVM--FGSKAFVQLLANPLVGI-LTHRVGYSLPMFTGFVIM-F  137 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~g~-l~dr~G~r~~l~~~~~~~-~  137 (256)
                      +..+...++.++.......|.+|.++ ++.|.+.+++|.+  ..+..+...+.+|+.++ ..||+|||+.+++...+. .
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l-~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLL-REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence            45566677888888888889999986 5679999999997  46778888889999855 799999998876555332 2


Q ss_pred             HHHHHHH---hhch-HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        138 LSTLIFA---FGRT-YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       138 ~~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      .......   ...+ ...++...++.++..+...+...++..|..++ ++++...+....+..+|..+|+.+.+++.++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-RTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222   2222 23334445556666777777778888898887 88888888888888999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      |||..|++.+++.++..+..++..++
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999998888766665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.56  E-value=1.3e-13  Score=119.38  Aligned_cols=156  Identities=11%  Similarity=0.094  Sum_probs=111.7

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCch-------hHHHHHHHHHHHHHHHHHhhchHHH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYS-------LPMFTGFVIMFLSTLIFAFGRTYGV  151 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r-------~~l~~~~~~~~~~~~~~~~~~~~~~  151 (256)
                      .....|.++.+++|.+..+.+.+.++..++..++.+++|+++||++||       ..+....++.++..++....++.+.
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~  350 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGA  350 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            344567777778899999999999999999999999999999999865       2223333333343444455556655


Q ss_pred             HHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHh
Q psy11010        152 LFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGC  231 (256)
Q Consensus       152 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~  231 (256)
                      ..+..++.+++.+...+...+++.+..|  +++|.+.|+.+....+|.+++|.+.+ ..+..+|+..|++.+++.+++.+
T Consensus       351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        351 AIVVMILFSIFVQAACGATFGIVPFVSR--RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccCh--hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence            5556666777666666666677777654  79999999987777777777766644 22234699999999888888776


Q ss_pred             Hhhhee
Q psy11010        232 KCNYTI  237 (256)
Q Consensus       232 ~~~~~~  237 (256)
                      +.++..
T Consensus       428 ~~~~~~  433 (476)
T PLN00028        428 PVAFIH  433 (476)
T ss_pred             HHHhee
Confidence            665543

>KOG0253|consensus

Probab=99.56  E-value=8e-14  Score=112.15  Aligned_cols=184  Identities=11%  Similarity=0.025  Sum_probs=152.3

Q ss_pred             ccccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHH
Q psy11010         54 SRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGF  133 (256)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~  133 (256)
                      ..+.++.......+..+...+-... .....+...+..|.+..+..++......+..+++..+|.++|++|||+.+....
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~-~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMML-LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHH-HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            3566777777777766655444333 344444457778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        134 VIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      +...+..++.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|. .+|..-+-+. ..+.+|.++...+.-.+..+.
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~-~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPS-SHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccC-cCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999 88889999999998 8998877777 889999999999998888999


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      ||||..........+.+.+ .+..++.++
T Consensus       228 gwr~~l~~~~~pl~~~a~f-~~w~~ESpR  255 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARF-LVWVYESPR  255 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHH-HhhcccCcc
Confidence            9999988888665554444 444566554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.56  E-value=3e-13  Score=114.67  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=106.6

Q ss_pred             HHHHHhhhcCcchhHHHHHHHHH-HHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH---Hhh-chHHHHHHHHH-
Q psy11010         84 RENRHKYLMGETKAVGVMFGSKA-FVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF---AFG-RTYGVLFLARS-  157 (256)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-  157 (256)
                      ++++.+++|.++.+++++..... ++..++.++.|++.||+|+|+.+..+.++..+..+..   ++. ++.+.+++..+ 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            33456778999999999987655 4688999999999999999998877776655554332   343 45555555544 


Q ss_pred             ---HHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhh
Q psy11010        158 ---LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       158 ---l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  234 (256)
                         ..|++.+...+....++.+.+|. +++    ++++...++|..+++.++|.+.++.||+..|.+.+++++++.++.+
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSA-TQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               44555555566666677777665 544    5555556677776777899999999999999999988888766654


Q ss_pred             hee
Q psy11010        235 YTI  237 (256)
Q Consensus       235 ~~~  237 (256)
                      ...
T Consensus       388 ~~~  390 (402)
T PRK11902        388 LMR  390 (402)
T ss_pred             HHh
Confidence            433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.56  E-value=1e-12  Score=111.14  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=116.9

Q ss_pred             hhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q psy11010         82 VARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGI  161 (256)
Q Consensus        82 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  161 (256)
                      ..++++.+++|.+..+.+.+.....++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|+
T Consensus       238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33333456789999999999999999999999999999999654444444333344444555556677777788899999


Q ss_pred             hhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhH
Q psy11010        162 GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                      +.+...+...+++.+..|  +++++..+......++|..+||.++|++.+..|++..+...+++.++..+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA--DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            999999999999999886  456677888888889999999999999999999998888877766554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.55  E-value=2.2e-13  Score=111.71  Aligned_cols=172  Identities=19%  Similarity=0.158  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+....++.++..=+.+.+......+-..++|++..+...+.....+..+++++++|+|.||+|.|+++..+.++..+.+
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            44444555555555555666666777777999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHH
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPF  219 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~  219 (256)
                      +...+......++++-.+.|...|..++..-++..+..|+ ++-++.+|+++.....+.++||.+.+.+.+..| -|..+
T Consensus       333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~-~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPK-GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC-ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            8777777677788888999999999999999999999998 999999999999999999999999999998765 67777


Q ss_pred             HHHHHHHHHHHhHh
Q psy11010        220 LILSALALGDGCKC  233 (256)
Q Consensus       220 ~~~~~~~~~~~~~~  233 (256)
                      ....++..++.++.
T Consensus       412 ~~i~vll~iGl~~L  425 (438)
T COG2270         412 LSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHhhHhhE
Confidence            77666666654443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.54  E-value=4.6e-13  Score=111.53  Aligned_cols=151  Identities=17%  Similarity=0.240  Sum_probs=133.1

Q ss_pred             cCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhh
Q psy11010         92 MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGM  171 (256)
Q Consensus        92 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  171 (256)
                      +.+...+|.+.++.-+..++...+..++.+|+|.|+.++++..++.+=..+++++++.+.+.+.+.+-|+-.........
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCcchhhHHHHH-HHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        172 GMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       172 ~~~~~~~~~~~~r~~~~g~-~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      -++++.+|+ |..++...+ .+.+.++|.++.+.++|.+.|+.|++.+|++.+.+.+...++..+.++++++.
T Consensus       335 kYI~~~fd~-rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  335 KYITAHFDK-RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHS-G-GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHhCCH-hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999997 888888888 57899999999999999999999999999999999888888888777665544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.53  E-value=3.5e-13  Score=116.34  Aligned_cols=177  Identities=16%  Similarity=0.040  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHH--------H
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPM--------F  130 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l--------~  130 (256)
                      +..++...+..+............+|.++.+.+|.+..+.++..++..++..++.++.|+++||+++|+..        .
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIF  339 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            33455555555665566666666788888888999999999999999999999999999999998654221        1


Q ss_pred             HHHHHH--HHHHHHHHh-hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHh
Q psy11010        131 TGFVIM--FLSTLIFAF-GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGG  207 (256)
Q Consensus       131 ~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~  207 (256)
                      .+....  ++..+.... ..+....++...+.+.+.+...+.......|..|  +.+|.+.++.+....+|.+++|.+.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~l~~~i~p~l~g  417 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP--RFLGFIKGITGLPGFIGGLIASTLAG  417 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh--hHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            111111  111111222 2334444444555555555555555555566665  68999999999999999999999999


Q ss_pred             hhhhcc---CchHHHHHHHHHHHHHHhHhhhee
Q psy11010        208 IMYQFV---GKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       208 ~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      .+.+..   +|...|.+.++..++..++..+..
T Consensus       418 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       418 NILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             eeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            987653   388899998888888766555433

>TIGR00896 CynX cyanate transporter

Probab=99.52  E-value=1.6e-12  Score=108.31  Aligned_cols=139  Identities=14%  Similarity=0.102  Sum_probs=109.1

Q ss_pred             hHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHHHHHHHHHHHHHHhhchHHHH
Q psy11010         74 MLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGFVIMFLSTLIFAFGRTYGVL  152 (256)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (256)
                      ..........|.+++ +.|.+..+.+.+.+...++.++++++.|++.||+ +||+.+..+.++.+++.+.+.+..+....
T Consensus       211 ~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
T TIGR00896       211 GLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW  289 (355)
T ss_pred             HHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            333344456677764 5799999999999999999999999999999999 56667777777777777766665443322


Q ss_pred             HHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        153 FLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       153 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                       ...++.|++.+..++...+.+.+..+++++++...++.+....+|..++|.+.|++.++.|
T Consensus       290 -~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       290 -AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             -HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2456789999999988778777665532677899999998889999999999999999876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09669 putative symporter YagG; Provisional

Probab=99.52  E-value=8e-13  Score=113.50  Aligned_cols=176  Identities=15%  Similarity=0.073  Sum_probs=127.1

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh----cCc-hhHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR----VGY-SLPMFTGFVIMFLS  139 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~-r~~l~~~~~~~~~~  139 (256)
                      ..+..+..+........+++.++.+.+|+++.++|.+..+..+..++..|+.|+++||    +|| |+.++++.+..++.
T Consensus        14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~   93 (444)
T PRK09669         14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVV   93 (444)
T ss_pred             hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHH
Confidence            3344444444444455567777889999999999999999999999999999999998    776 45566676777666


Q ss_pred             HHHHHhhc------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh--
Q psy11010        140 TLIFAFGR------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ--  211 (256)
Q Consensus       140 ~~~~~~~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~--  211 (256)
                      .++....+      ....+++...+.+.+......+..++.+|+.+++++|.+..+.......+|..+++.+...+..  
T Consensus        94 ~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~  173 (444)
T PRK09669         94 CLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL  173 (444)
T ss_pred             HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65544433      2455566666777777777777889999998544889998888888888887777665543332  


Q ss_pred             -----ccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        212 -----FVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       212 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                           ..+|+..+.+.+++.++..+..++..+|+
T Consensus       174 ~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        174 GKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence                 24688888888887777666555555543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.51  E-value=9e-13  Score=125.43  Aligned_cols=151  Identities=14%  Similarity=0.105  Sum_probs=126.8

Q ss_pred             hhchhhhHHHHHhhhcCcch-hHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy11010         77 TTVEDVARENRHKYLMGETK-AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLA  155 (256)
Q Consensus        77 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (256)
                      ......++.++.+.+|.+.. ..+++.+...++.+++.++.|+++||+++++++.++.++.+++.++..+..+.+.++++
T Consensus       249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (1146)
T PRK08633        249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL  328 (1146)
T ss_pred             HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            33445567777888999998 99999999999999999999999999999999999888888888888887888888888


Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc-cCchHHHHHHHHHHHH
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF-VGKTAPFLILSALALG  228 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~~  228 (256)
                      .++.|++.+...+...+++.+..|+ +.||+++|+.++...+|.++++.+++.+... .++...|++.+.+.++
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~p~-~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        329 FFLFGFSAGLFIVPLNALIQFRAPE-KELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhcCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 9999999999999999998888887766542 3455556655554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.51  E-value=8.8e-13  Score=114.30  Aligned_cols=144  Identities=13%  Similarity=0.137  Sum_probs=120.7

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh---
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF---  145 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---  145 (256)
                      .++............|.++++.+|.++.+.++......++..++.++.|++.||+|||+.+..+.++.+++..+..+   
T Consensus       264 ~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~  343 (485)
T TIGR00711       264 MSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT  343 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence            33333444444456777888888999999999999999999999999999999999999999999888888877662   


Q ss_pred             -hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        146 -GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       146 -~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                       ..+.+.+....++.|++.+...+.......+..|+ ++|+++.|+.+....+|..+|+.+.+.+.++.
T Consensus       344 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       344 PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-HKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23456667778899999998888878888888998 99999999999999999999999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00898 2A0119 cation transport protein

Probab=99.50  E-value=9.1e-13  Score=114.93  Aligned_cols=138  Identities=18%  Similarity=0.167  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHhhhhchhhhhhhhhhhc
Q psy11010        100 VMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTY--GVLFLARSLQGIGSSCSSVSGMGMLAER  177 (256)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~  177 (256)
                      +...+..+...++.++.+++.||+|||+.+..+.++.+++.++..+.++.  +...+..++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34445567778888999999999999999999999888888877765543  4445556667777777888889999999


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        178 YPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       178 ~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +|+ +.|++++|+.+....+|.+++|.+.+ + +..++..++++.+++.++..++.++ .|+++
T Consensus       439 ~p~-~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet~  498 (505)
T TIGR00898       439 YPT-VVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPETK  498 (505)
T ss_pred             ccH-HHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCCC
Confidence            998 99999999999999999999999998 4 4456677888888877776665544 45433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.50  E-value=1.2e-12  Score=110.83  Aligned_cols=150  Identities=23%  Similarity=0.229  Sum_probs=117.0

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh-hcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH-RVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQ  159 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (256)
                      ...|.+.++..+ ++.+.+++.++..++...+..+.+++.| |++.++.+..+.++.+++.++.++.++.+.+.+..++.
T Consensus       229 ~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  307 (400)
T PRK11646        229 LMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF  307 (400)
T ss_pred             HhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            345666655444 6788899988888777766666666665 56767777888888888888887888887777778888


Q ss_pred             HhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc---C-chHHHHHHHHHHHHHHhH
Q psy11010        160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV---G-KTAPFLILSALALGDGCK  232 (256)
Q Consensus       160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~---g-~~~~~~~~~~~~~~~~~~  232 (256)
                      |++.+...|...+++.+..|+ ++||+++|+++....+|..+||.++|++.++.   + ....+++.+++.++..+.
T Consensus       308 ~~g~~~~~p~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        308 YIGSIIAEPARETLSASLADA-RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHccHHHHHHhcCCc-ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            999888888989999999998 99999999999999999999999999999874   2 345555555555554444

>PRK10133 L-fucose transporter; Provisional

Probab=99.49  E-value=2.6e-12  Score=110.02  Aligned_cols=146  Identities=12%  Similarity=-0.067  Sum_probs=117.2

Q ss_pred             hhHHHH-HhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy11010         82 VARENR-HKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQG  160 (256)
Q Consensus        82 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  160 (256)
                      ..+.++ ++.+|.++.+.++....+.++..+++++.|++.||+|+|+++..+.++.+++.++..+.++.. .+....+.|
T Consensus       280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g  358 (438)
T PRK10133        280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCS  358 (438)
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            345553 566899999999999999999999999999999999999999988887777766666555532 345677899


Q ss_pred             hhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHHHHHHh
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALALGDGC  231 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~  231 (256)
                      ++.+..+|...+...+.++  ++.+.+.++... ..+|..++|.+.|.+.+..| .+..|++..+..+....
T Consensus       359 lg~~~i~P~~~s~a~~~~~--~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLG--QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHHHHHHcccc--hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999986  456778887764 44688889999999999887 78888766655554333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.49  E-value=8e-13  Score=125.71  Aligned_cols=165  Identities=12%  Similarity=-0.033  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      ..+..++..+....+...+|.++.+.+|.++.+.|++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~  309 (1140)
T PRK06814        230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA  309 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH
Confidence            33333333444444555678888888999999999999999999999999999999988877766666655555554443


Q ss_pred             hh--------------------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhh
Q psy11010        145 FG--------------------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP  204 (256)
Q Consensus       145 ~~--------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~  204 (256)
                      +.                    .+.+.++++.++.|++.+...+...+++.+.+|+ ++||+++|+.++...+|..++++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~G~v~g~~~~~~~~~~~ig~~  388 (1140)
T PRK06814        310 FASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-AHRARVIAANNVLNAAFMVAGTI  388 (1140)
T ss_pred             hcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-ccceeeeHHHHHHHHHHHHHHHH
Confidence            32                    5667778888999999999999999999999998 99999999999999999999999


Q ss_pred             HHhhhhh-ccCchHHHHHHHHHHHHHH
Q psy11010        205 FGGIMYQ-FVGKTAPFLILSALALGDG  230 (256)
Q Consensus       205 i~~~l~~-~~g~~~~~~~~~~~~~~~~  230 (256)
                      +.+.+.+ ..++...+++.+++.++..
T Consensus       389 ~~g~l~~~~~~~~~~~~~~~~~~~~~~  415 (1140)
T PRK06814        389 ILALLQALGFSIPWIILFIALANLIVA  415 (1140)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            9998874 4466666665555444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.49  E-value=1.2e-12  Score=113.86  Aligned_cols=144  Identities=16%  Similarity=0.173  Sum_probs=119.8

Q ss_pred             HHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh-
Q psy11010         67 IALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF-  145 (256)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-  145 (256)
                      +..+.............|.++++.+|.++.+.|.......++..++.++.|++.||+|+|+++..+.++.+++.++..+ 
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~  345 (495)
T PRK14995        266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT  345 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh
Confidence            3333333334344456677888889999999999999999999999999999999999999999898888877765543 


Q ss_pred             --hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy11010        146 --GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ  211 (256)
Q Consensus       146 --~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~  211 (256)
                        .++.+......++.|+|.|...+.....+.+..|+ ++++.+.+++++...+|..+|+.+.+.+.+
T Consensus       346 ~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        346 DFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-EKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             cCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              24555666778899999999999889999999998 999999999999999999999999998765

>KOG0569|consensus

Probab=99.48  E-value=2e-12  Score=109.80  Aligned_cols=160  Identities=14%  Similarity=0.019  Sum_probs=126.3

Q ss_pred             hhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc----hH--H---HH
Q psy11010         82 VARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR----TY--G---VL  152 (256)
Q Consensus        82 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~----~~--~---~~  152 (256)
                      .+...+-++.|++..++-+......+...+..+++.++.||+|||+.++.+..++.+..+++....    ..  |   ..
T Consensus       291 ~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~  370 (485)
T KOG0569|consen  291 FYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC  370 (485)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344445577899999999999999999999999999999999999999999998888887765421    11  1   12


Q ss_pred             HHHHHHHHhhhhc-hhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHh
Q psy11010        153 FLARSLQGIGSSC-SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGC  231 (256)
Q Consensus       153 ~~~~~l~G~~~g~-~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~  231 (256)
                      +++.++..+..+. ..|...-+.+|++|+ +.|..++++.....-+..++-....-.+.+..|- +.|....+.+++..+
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~-~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i  448 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQ-SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLI  448 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence            3444444444443 367778899999998 9999999999888888888877777777777776 778888888888888


Q ss_pred             HhhheeecCCCC
Q psy11010        232 KCNYTIVQKSSS  243 (256)
Q Consensus       232 ~~~~~~~~~~~~  243 (256)
                      ..++..||++.+
T Consensus       449 ~~~~~lPETkgr  460 (485)
T KOG0569|consen  449 YLYRYLPETKGR  460 (485)
T ss_pred             HHHHhCcccCCC
Confidence            888989887754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.47  E-value=5.1e-12  Score=106.15  Aligned_cols=138  Identities=14%  Similarity=0.193  Sum_probs=104.4

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh-----chHHHHH
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-----RTYGVLF  153 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~  153 (256)
                      .....|.+..+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+++...     ++...+.
T Consensus       225 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (385)
T TIGR00710       225 FFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMII  304 (385)
T ss_pred             HHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            33445666777889999999999999999999999999999999999999988887777776655542     2334455


Q ss_pred             HHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHhhhhhHHhhhhhccCchHHH
Q psy11010        154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL-GVLIGPPFGGIMYQFVGKTAPF  219 (256)
Q Consensus       154 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l-g~~~g~~i~~~l~~~~g~~~~~  219 (256)
                      ...++.|++.+...+.......|..|  ++++++.++++..... |.+.+|.+ +.+.+..+|...+
T Consensus       305 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~  368 (385)
T TIGR00710       305 GPMMFVGIGNSMISSIAMAYALEDFP--HVAGTASALFGTLRLVLGAIVGYLV-SLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHH-HhccccChHHHHH
Confidence            56778899999988988888888885  5799999998776654 55555554 4554444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.47  E-value=6.5e-12  Score=106.05  Aligned_cols=138  Identities=14%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQG  160 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  160 (256)
                      ...+.+..+++|.++.+.+.+.+...++..++.++.+++.||+|+|+++..+.++..++.++..+.++.+..+....+.+
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  303 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLIC  303 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667788999999999999999999999999999999999999999999888888887777665554444445555


Q ss_pred             hhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHH
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSA  224 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~  224 (256)
                      .|.+...+.  ....+..|. ++|+   |.......++..+|+.+++++.++.|+.....+.+.
T Consensus       304 ~g~~~~~~~--~~~~~~~~~-~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        304 AGFSVGFGV--AMSQALGPF-SLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHHhHH--HHHHHhccC-cccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            554444433  333445554 4443   333444556777788888888887777654444444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.47  E-value=6.1e-12  Score=106.37  Aligned_cols=153  Identities=12%  Similarity=-0.050  Sum_probs=121.1

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQG  160 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  160 (256)
                      ...+.+.++.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+.. .++..++..+.++.+...+..++.|
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G  304 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIG  304 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344556677789999999999999999999999999999999999988887753 3444445556667776777788899


Q ss_pred             hhhhchhhhhhhhhhhcccCcch-hhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhhe
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRE-RGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~-r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      ++.+...+...+.+.+..|+ +. +|++.++.+....+|..++..+.+.+ +..|-+..+.+.++..++.+.+.+.+
T Consensus       305 ~~~g~~~~~~~~~~q~~~~~-~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        305 ALGGFFVVPMNALLQHRGHV-LVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HhhhhhhhhHHHHHHhhCcc-cccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888887654 54 79999999999999999999998855 56787777777666655555554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.47  E-value=4.9e-12  Score=107.65  Aligned_cols=178  Identities=11%  Similarity=0.056  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL  138 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~  138 (256)
                      .+.+..+.++.+......   ...+|.+.++.+  +.........+..+...+.+|++|+++||+|+|+++.++.+.+++
T Consensus       254 ~Wllslly~~tFG~fvg~---s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i  328 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGF---SAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAI  328 (462)
T ss_pred             hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHH
Confidence            334444444444333333   334555665554  333333344556778889999999999999999999998887777


Q ss_pred             HHHHHH-hh-----chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccC------c--------------chhhHHHHHHH
Q psy11010        139 STLIFA-FG-----RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPD------D--------------RERGNAMGIAL  192 (256)
Q Consensus       139 ~~~~~~-~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~------~--------------~~r~~~~g~~~  192 (256)
                      ...... ..     .+++.+.+..+...++.|........++.+++|+      +              ++-|...|+.+
T Consensus       329 ~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~  408 (462)
T PRK15034        329 FSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS  408 (462)
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH
Confidence            654321 11     2455555555555555565666666677777752      0              15678889999


Q ss_pred             HHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        193 GGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       193 ~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ....+|+++-|.+.+...+..| +...|+...+..+++.++.++.+.++.
T Consensus       409 a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        409 AIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             HHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999988888877655 888999999999998888887665443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.45  E-value=6.3e-12  Score=108.46  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC-----chhHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG-----YSLPMFTGF  133 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~l~~~~  133 (256)
                      ...+.++...++..+.. .......++++.+++|+++++++...+...+...+ .+++|.++||++     ||+.++.+.
T Consensus        25 ~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~  102 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSG  102 (468)
T ss_pred             chHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHH
Confidence            34445555566666666 55555667777888999999999999999999987 555999999997     777777776


Q ss_pred             HHH-HHHHHHHHhhchHHHHH-HHHHHHHhhhhchhhhhhhhhhhcccCcchh--hHHHHHHHHHHHHHHhhhhhHHhhh
Q psy11010        134 VIM-FLSTLIFAFGRTYGVLF-LARSLQGIGSSCSSVSGMGMLAERYPDDRER--GNAMGIALGGLALGVLIGPPFGGIM  209 (256)
Q Consensus       134 ~~~-~~~~~~~~~~~~~~~~~-~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r--~~~~g~~~~~~~lg~~~g~~i~~~l  209 (256)
                      ++. .+.....+..++..... +..++.+++.+.......++..|..++ +++  +...+.......+|..+|+.++|.+
T Consensus       103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~-~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRE-SPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhc-CCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            665 34434444444443333 478889999999999999999999873 332  2234444455668999999999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        210 YQFVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       210 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      .+..+|+..|++.+++.++..+. .+..+|+
T Consensus       182 ~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~  211 (468)
T TIGR00788       182 LDKTLTRILFLITAALLLLQLFV-SNLSKER  211 (468)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHH-HHhcccc
Confidence            99999999999998888876433 3444553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.45  E-value=2.8e-12  Score=110.26  Aligned_cols=151  Identities=15%  Similarity=0.113  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      ..++.++............+.+.++.+|.++...++......++..++.++.+++.||+|+|+++..+.++.+++.++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~  312 (448)
T PRK09848        233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF  312 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333344455566666777665555555555677888999999999999999999999988888877776


Q ss_pred             hhc--hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc------chhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        145 FGR--TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD------RERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       145 ~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~------~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      +.+  +.+.+++..++.|+|.+...+...++.+|..+.+      +++|...|+++....+|..+|+.+.+.+.+..||
T Consensus       313 ~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        313 WVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            643  5666677788899999999999999999988641      2358999999999999999999999988776554

>KOG2504|consensus

Probab=99.44  E-value=2.2e-12  Score=111.45  Aligned_cols=175  Identities=18%  Similarity=0.224  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC--chhHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG--YSLPMFTGFVIMF  137 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~l~~~~~~~~  137 (256)
                      +.++.+.+...+....+......++.+. ++.+.+..+.+.+.++.++...++.++.|+++|+..  ++.+..++.++.+
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~-~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g  376 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYA-KSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG  376 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence            4455555555565666665555677774 588999999999999999999999999999999988  4555667777888


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-ch
Q psy11010        138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KT  216 (256)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~  216 (256)
                      +..+.+++.++++.+...-.+.|++.|.........+.|..+. ++-..+.|+.....+++..+||+++|++.|..| |.
T Consensus       377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            8888889999999999999999999999999888899999998 999999999999999999999999999999887 99


Q ss_pred             HHHHHHHHHHHHHHhHhhhe
Q psy11010        217 APFLILSALALGDGCKCNYT  236 (256)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~  236 (256)
                      ..|+..++..+++.+..+..
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             eehhhcChHHHHHHHHHHHh
Confidence            99999998888877655443

>KOG4686|consensus

Probab=99.44  E-value=1.4e-11  Score=96.22  Aligned_cols=176  Identities=16%  Similarity=0.226  Sum_probs=129.1

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH-H
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV-I  135 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~-~  135 (256)
                      ...+.+.++++++.+..+.+.   .+-|.+.++.+|+|+...+.+.+.......+.+++.|.++||+|++...+.+.. .
T Consensus       264 ppfw~~~iicv~yyva~fPFi---~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFI---TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL  340 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHh---hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence            345566666666666554443   345557789999999999999999999999999999999999999977766543 3


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-  214 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-  214 (256)
                      ..++=....+  +.+.=+++..+.|+............++...|+ ++.|++.|..++..++|-.+.|+++|.+.++.| 
T Consensus       341 tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE-~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  341 TLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPE-EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence            3333333333  223335667788998888877788999999997 999999999999999999999999999998765 


Q ss_pred             --chHHHHHH-HHHHHHHHhHhhheeec
Q psy11010        215 --KTAPFLIL-SALALGDGCKCNYTIVQ  239 (256)
Q Consensus       215 --~~~~~~~~-~~~~~~~~~~~~~~~~~  239 (256)
                        |--+|.+. +.+++. .+.+.+...+
T Consensus       418 y~~le~ffl~~~~~aL~-svgil~~~N~  444 (459)
T KOG4686|consen  418 YDNLEAFFLIIGLMALT-SVGILFYLNK  444 (459)
T ss_pred             hhhHHHHHHHHHHHHHH-HHHHHhheec
Confidence              44444443 344444 3444444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.41  E-value=2e-11  Score=104.43  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      +..+++..++............+.+.+..+|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.+
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~  305 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL  305 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence            334444455555555555566666766667755 6788888899999999999999999999999999999999999999


Q ss_pred             HHHhhc--hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc------chhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        142 IFAFGR--TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD------RERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       142 ~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~------~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      +..+.+  +.+.+++..++.|++.+.......++++|..+.+      ++.|..+|+++....+|..+++.+.+.+.+..
T Consensus       306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            888775  8899999999999999999999999999988631      33588899999999999999999999887765


Q ss_pred             Cc
Q psy11010        214 GK  215 (256)
Q Consensus       214 g~  215 (256)
                      |+
T Consensus       386 Gy  387 (428)
T PF13347_consen  386 GY  387 (428)
T ss_pred             Cc
Confidence            44

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.41  E-value=1.8e-11  Score=106.00  Aligned_cols=176  Identities=13%  Similarity=0.062  Sum_probs=126.8

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh----hcCc-hhHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH----RVGY-SLPMFTGFVIMFLS  139 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~-r~~l~~~~~~~~~~  139 (256)
                      ..+..+..+.....+.++++.|+++.+|+++..+|.+..+..+..++..|+.|+++|    |+|| |+.++++.+..+++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV   90 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence            344445555666666677788888999999999999999999999999999999999    6698 56666777777777


Q ss_pred             HHHHHhhc------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh--
Q psy11010        140 TLIFAFGR------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ--  211 (256)
Q Consensus       140 ~~~~~~~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~--  211 (256)
                      .+++...+      .+..+++...+.+++......+..++.+|..+++++|.+..+.......+|..+.+.+...+.+  
T Consensus        91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429         91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65554322      1334555566778888888888899999998533899999998777777776666555443322  


Q ss_pred             -----ccCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        212 -----FVGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       212 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                           ..+|+....+.+++.++..+..++..+|+
T Consensus       171 g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        171 GGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence                 12466666676666666555555545554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.40  E-value=6.8e-11  Score=95.83  Aligned_cols=151  Identities=18%  Similarity=0.176  Sum_probs=115.3

Q ss_pred             hhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhh
Q psy11010         89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSV  168 (256)
Q Consensus        89 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  168 (256)
                      +++|.++.+++.+.........+..++.|.++||+|||+..+..+++.+++++. -..++++.++++|++.|++....+.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998864 4457899999999999999999999


Q ss_pred             hhhhhhhhc-----ccCcchhhHHHHHHH-HHHHHHHhhhhhHHhhhhhccCc--hHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        169 SGMGMLAER-----YPDDRERGNAMGIAL-GGLALGVLIGPPFGGIMYQFVGK--TAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       169 ~~~~~~~~~-----~~~~~~r~~~~g~~~-~~~~lg~~~g~~i~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                      ..-++....     +|+ +..+..++... ...++-+++...++.++.+..+.  ..+|....++.+++.+++....+|.
T Consensus       141 ~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  141 AFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            888865433     232 33333333333 23344445555666667666554  7888888888888777776555554


Q ss_pred             C
Q psy11010        241 S  241 (256)
Q Consensus       241 ~  241 (256)
                      .
T Consensus       220 y  220 (354)
T PF05631_consen  220 Y  220 (354)
T ss_pred             C
Confidence            3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.40  E-value=6.2e-12  Score=104.18  Aligned_cols=128  Identities=21%  Similarity=0.261  Sum_probs=108.1

Q ss_pred             HhhhchhhhHHHHHhhhcCc-chhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh---chHH
Q psy11010         75 LLTTVEDVARENRHKYLMGE-TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG---RTYG  150 (256)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~---~~~~  150 (256)
                      .........+.++.+++|.+ ..+.+.+.++..++..++.++.|++.||+++|+.+........+..+.....   ++..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            33334556666667888999 7899999999999999999999999999999888877777777766655543   3456


Q ss_pred             HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhh
Q psy11010        151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGP  203 (256)
Q Consensus       151 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~  203 (256)
                      ..++..++.|++.+...+...+++.|.+|+ ++||++.|+.+...++|..+||
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPP-EYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHCC
Confidence            677788889999999999999999999998 9999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.40  E-value=3.3e-12  Score=109.19  Aligned_cols=167  Identities=18%  Similarity=0.193  Sum_probs=131.8

Q ss_pred             HhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh----hcCchhH-HHHHHHHHHHHHHHHHhh-
Q psy11010         73 NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH----RVGYSLP-MFTGFVIMFLSTLIFAFG-  146 (256)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~-l~~~~~~~~~~~~~~~~~-  146 (256)
                      +.........+..+..+.+|+++...|.+..+..+..++..|+.|.++|    |+|||+. ++.+.+..+++.+++... 
T Consensus        14 ~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~   93 (428)
T PF13347_consen   14 NMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP   93 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc
Confidence            3333334445666778889999999999999999999999999999999    8996655 457778888887777654 


Q ss_pred             c-------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc------
Q psy11010        147 R-------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV------  213 (256)
Q Consensus       147 ~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~------  213 (256)
                      +       ....+.+..++..++......+..++..|..+++++|.+..+..+....+|..+...+.+.+.+..      
T Consensus        94 p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~  173 (428)
T PF13347_consen   94 PAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTS  173 (428)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccc
Confidence            3       233456677778999999999999999999985479999999988888888876666666555321      


Q ss_pred             -CchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        214 -GKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       214 -g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                       +|++..++.+++.++..++..+..+|
T Consensus       174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  174 NGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhheeee
Confidence             58999999999988888888777777

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.40  E-value=2.7e-11  Score=101.45  Aligned_cols=165  Identities=15%  Similarity=0.017  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCc---hhHHHH-HHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGY---SLPMFT-GFVIMF  137 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~---r~~l~~-~~~~~~  137 (256)
                      ++.+.+..+........+...+|.+++ +.|.+.. .+....+..+...++   .++++||..|   |+.... ..++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a  268 (368)
T TIGR00903       194 LWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIA  268 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence            344444444445555555667888874 4677654 566666666555555   4677777654   333332 344444


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchH
Q psy11010        138 LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTA  217 (256)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~  217 (256)
                      +...+.++..+....++...+.|++.....+...++.+|.+|+ +.|+++.|+.+....+|++.+|++.+.+..  |...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~  345 (368)
T TIGR00903       269 AFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-ELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEA  345 (368)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-hhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHH
Confidence            4444555555554445556667777777778788999999998 999999999999999999999999988774  6777


Q ss_pred             HHHHHHHHHHHHHhHhh
Q psy11010        218 PFLILSALALGDGCKCN  234 (256)
Q Consensus       218 ~~~~~~~~~~~~~~~~~  234 (256)
                      .|.+.++..+++.+..+
T Consensus       346 ~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       346 YFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888777666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=99.39  E-value=3.8e-11  Score=103.48  Aligned_cols=177  Identities=12%  Similarity=0.042  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh----cCch-hHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR----VGYS-LPMFTGFVIMFL  138 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r-~~l~~~~~~~~~  138 (256)
                      ...+..+..+.........+..+..+..|+++..+|.+..+.-+.-++.-|+.|+++||    +||| +.++++.+..++
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            33344444445555555566777789999999999999999999999999999999996    6876 445567677777


Q ss_pred             HHHHHHhhch------HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        139 STLIFAFGRT------YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       139 ~~~~~~~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      +.+++...++      ...+++...+..++......+..++.+|..+..++|.+..++...+..+|..+++.+...+.+.
T Consensus        93 ~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~  172 (460)
T PRK11462         93 VCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL  172 (460)
T ss_pred             HHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666554332      3445566667788888888889999999988658999999999999998888887776554443


Q ss_pred             -------cCchHHHHHHHHHHHHHHhHhhheeecC
Q psy11010        213 -------VGKTAPFLILSALALGDGCKCNYTIVQK  240 (256)
Q Consensus       213 -------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (256)
                             .+|+....+.+++.+++..+.++..+|+
T Consensus       173 ~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        173 IGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence                   2577777777777666655555545544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.39  E-value=6.1e-11  Score=95.65  Aligned_cols=168  Identities=16%  Similarity=0.103  Sum_probs=136.4

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHHHHHHHHHHHHHHhhc
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGFVIMFLSTLIFAFGR  147 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~  147 (256)
                      .-+++..++.....+|.+. .|.|+|+.+.|++.+...+......+....+.+|. .+|+..+....++.++.+.+.+.+
T Consensus       217 mGlqS~~~Y~~~~WLP~il-i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P  295 (395)
T COG2807         217 MGLQSLLYYIVIGWLPAIL-IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP  295 (395)
T ss_pred             HHhhHHHHHHHHHHHHHHH-HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            3345566666677888875 66799999999999999999999999999999965 578888888889999988887776


Q ss_pred             hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHH
Q psy11010        148 TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALA  226 (256)
Q Consensus       148 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~  226 (256)
                      ....+.- -++.|+|.|..++....++.+..++.++-++-.|+.+...++=+.+||.+.|++.|..| |+......+...
T Consensus       296 ~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         296 GQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             hhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            4433333 48999999999999999999988764666777888888888888999999999999875 998888877777


Q ss_pred             HHHHhHhhheee
Q psy11010        227 LGDGCKCNYTIV  238 (256)
Q Consensus       227 ~~~~~~~~~~~~  238 (256)
                      ++..+.-+..-+
T Consensus       375 i~m~i~Gl~a~r  386 (395)
T COG2807         375 LLMLIFGLRAGR  386 (395)
T ss_pred             HHHHHHHhhcch
Confidence            776666555443

>KOG0253|consensus

Probab=99.39  E-value=8.2e-12  Score=100.78  Aligned_cols=134  Identities=13%  Similarity=0.192  Sum_probs=105.2

Q ss_pred             HHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchh
Q psy11010        105 KAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER  184 (256)
Q Consensus       105 ~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r  184 (256)
                      ..+....+.++.+++.||+|||+.+..+++++++..++...+.+-..+.+..+..-++..+.+.+.+.|..|.+|. +.|
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPT-avR  468 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPT-AVR  468 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccch-hhh
Confidence            3455677889999999999999999999999999998887765444444444444455566677789999999999 999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        185 GNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       185 ~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +++.|.-..+..+|+++.|.++  +.....-..+..+.+.+++++.+...++..+++
T Consensus       469 atgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            9999999999999999999998  333344556677778888887777776655544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.38  E-value=4.9e-11  Score=93.37  Aligned_cols=175  Identities=16%  Similarity=0.119  Sum_probs=124.3

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF  137 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~  137 (256)
                      ||..+....+.....+..+ . .+...+.+++.+|.+.++...+.+...+|..+ .++.|.+.|++|++.++.+|.+...
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y-~-Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTY-T-FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF   77 (250)
T ss_pred             ChhhHHHHHHHHHhcCccc-c-hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence            3444444444444433222 2 23444456889999999999999999999886 5888999999999999999999999


Q ss_pred             HHHHHHHhh-------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010        138 LSTLIFAFG-------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY  210 (256)
Q Consensus       138 ~~~~~~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~  210 (256)
                      +|+.+...+       .+++.+.+..++.|.+.+...........+.||  ++||++.|+.-...++++.+-..+...+.
T Consensus        78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP--~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP--RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc--cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            998877642       356777777777878777777776677778887  68999999999999998888777777666


Q ss_pred             hccCchHHHHHHHHHHHHHHhHhhhee
Q psy11010        211 QFVGKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       211 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      +...-...+.......+++.+...+..
T Consensus       156 ~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  156 GDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            653334333333334444333334433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.37  E-value=2.5e-11  Score=101.29  Aligned_cols=174  Identities=15%  Similarity=0.169  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH--HH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF--LS  139 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~--~~  139 (256)
                      .+......+...+..+...|+.+.++++..|++++++|.+.++..+...+.+|+.|.++||+|.||-++....+..  .+
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~   88 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG   88 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            3333444444455577778899999888899999999999999999999999999999999997776554433222  22


Q ss_pred             H-HHHHhh----chHH-HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        140 T-LIFAFG----RTYG-VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       140 ~-~~~~~~----~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      . +...+.    .|.+ ..+++....|+......|..-+++.+..   ++.+.-.|-.....++|.+++..++|.+.+. 
T Consensus        89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s---r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-  164 (412)
T PF01306_consen   89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS---RRNGFEYGRARMWGSIGFAIASLLAGILFNI-  164 (412)
T ss_dssp             HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH---HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH---HHhcCCcchHHHHhhHHHHHHHHHhheeeee-
Confidence            2 222222    2221 2223333344445555555555555554   5556667778888999999999999999874 


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      +....||+.....++..++.++..++
T Consensus       165 ~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  165 NPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            55677887666655555555555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.37  E-value=2.1e-11  Score=101.62  Aligned_cols=126  Identities=12%  Similarity=0.094  Sum_probs=100.9

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHH-HHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh-
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKA-FVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-  146 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-  146 (256)
                      .++............+.++.+ +|.++++.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~  296 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLA  296 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555667777655 8999999998888766 5778999999999999999999988888877776655442 


Q ss_pred             ----------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHH
Q psy11010        147 ----------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLA  196 (256)
Q Consensus       147 ----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~  196 (256)
                                ++.+.+..+.++.+++.+...+...+++.|.+|+ ++||+.+|+++...+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       297 SNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP-KFGATQMALLSSLSA  355 (356)
T ss_pred             hcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHh
Confidence                      3456677788889999999999999999999998 999999999887654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.36  E-value=8.1e-11  Score=98.74  Aligned_cols=132  Identities=14%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             HhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH---Hh-hchHH
Q psy11010         75 LLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF---AF-GRTYG  150 (256)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~---~~-~~~~~  150 (256)
                      .........+.+..+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+..   .. ..+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (377)
T PRK11102        209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFW  288 (377)
T ss_pred             HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            333344455666677789999999999999999999999999999999999999988876544433222   22 22344


Q ss_pred             HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHH-HHHHHHhhhhhHHhh
Q psy11010        151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGI  208 (256)
Q Consensus       151 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~-~~~lg~~~g~~i~~~  208 (256)
                      ...++..+.+.+.+........++.|..|  ++++++.++.+. ...+|..+++.+++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        289 ALVVGVAAFVGCVSMISSNAMAVILDEFP--HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44445555555555555666667777765  689999998655 355777777776543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.35  E-value=7.3e-11  Score=102.13  Aligned_cols=177  Identities=18%  Similarity=0.169  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcch----hHHHHHHHHHHHHHHhhhHHHH----hhhh-cCchhHH--
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETK----AVGVMFGSKAFVQLLANPLVGI----LTHR-VGYSLPM--  129 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~----l~dr-~G~r~~l--  129 (256)
                      .+..+++...+....+....+.++.+..++.+.+..    ..+++.++..+..++.+++..+    +.|| .+.+...  
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            344444444444555555555556665554443322    2678999999999988888664    4544 3334433  


Q ss_pred             HHHHHHHHHHHHHHHh---------hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHh
Q psy11010        130 FTGFVIMFLSTLIFAF---------GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVL  200 (256)
Q Consensus       130 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~  200 (256)
                      .+|.++.+++.+..++         ..|++++++..++.|+|.....|...+++.+..|+ +.||+++|++.....+|..
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-~~~g~~~g~~~l~~~~g~~  431 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-RLMGQMLGMWFLAQAMGSL  431 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHH
Confidence            7788888888877664         45889999999999999999999999999999998 9999999999999999999


Q ss_pred             hhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010        201 IGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       201 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      +++.+.....+..+|...|...++..++..++.++..|
T Consensus       432 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       432 LGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888877778888888888888877766655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11043 putative transporter; Provisional

Probab=99.33  E-value=1.8e-10  Score=97.53  Aligned_cols=136  Identities=7%  Similarity=-0.027  Sum_probs=102.4

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH---Hh--hchHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF---AF--GRTYGVLFLA  155 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~  155 (256)
                      ...|.+. ++.|.++.+.++......++..++..+.+++.||+|+|+.+....+..+++.+..   ..  .++...+++.
T Consensus       224 ~~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        224 TGSPFIL-EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            3455554 5689999999998888889999999999999999999987655554444443322   22  3445555666


Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHH
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPF  219 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~  219 (256)
                      ..+.|++.+..++...+...+..|  ++++++.|+++.....+...++.+.+.+.+.......+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  364 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP--QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS  364 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc--ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence            777888888888888888777775  68999999999988888889999999887754444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.32  E-value=6.3e-11  Score=102.60  Aligned_cols=151  Identities=13%  Similarity=0.057  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF  143 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~  143 (256)
                      .+....++............+.+.+...+ ++...+++.+...++.+++.+++++++||+|+|+.+..+.++.+++.+..
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            33333333333444333444444333333 45667777887788999999999999999999999998887766665544


Q ss_pred             Hh-----hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc------chhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        144 AF-----GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD------RERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       144 ~~-----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~------~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      .+     .++.+.+++..++.|++.+...+...++++|..+.+      +..|..++.......+|..+++.+.|++.+.
T Consensus       314 ~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        314 LLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32     345566677778899999999998899999986520      3346688999999999999999999998876


Q ss_pred             cCc
Q psy11010        213 VGK  215 (256)
Q Consensus       213 ~g~  215 (256)
                      .|+
T Consensus       394 ~Gy  396 (473)
T PRK10429        394 IGY  396 (473)
T ss_pred             cCC
Confidence            655

>PRK09669 putative symporter YagG; Provisional

Probab=99.28  E-value=8.2e-11  Score=101.08  Aligned_cols=121  Identities=13%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHhhhhchhhhhhh
Q psy11010         95 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA-F-GRTYGVLFLARSLQGIGSSCSSVSGMG  172 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~G~~~g~~~~~~~~  172 (256)
                      +...+.+.....+...++.+++++++||+|+|+.+..+.++.++..+... . .++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566667778888889999999999999999888776665433222 2 356667777888999999999999999


Q ss_pred             hhhhcccC------cchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        173 MLAERYPD------DRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       173 ~~~~~~~~------~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      +++|..+.      ++..|...+.++....+|..+|+.++|.+.+..|+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998752      13346778899999999999999999999887766

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.28  E-value=5.2e-10  Score=95.11  Aligned_cols=144  Identities=10%  Similarity=0.013  Sum_probs=107.0

Q ss_pred             hchhhhHHHHHhh-hcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy11010         78 TVEDVARENRHKY-LMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR  156 (256)
Q Consensus        78 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (256)
                      ...+.++.|..+. .+.+....+...+.+..+..+++++.+++.||+++|+++.+..++.++..++..+.++... ....
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l  328 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCL  328 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHH
Confidence            3445666665432 2444444555677777888999999999999999999999988888888888877766443 5677


Q ss_pred             HHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc------CchHHHHHHHHH
Q psy11010        157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV------GKTAPFLILSAL  225 (256)
Q Consensus       157 ~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~------g~~~~~~~~~~~  225 (256)
                      .+.|++.+..+|...++..+..++ +.+....++.. +. +|+.+.|++.|++.|..      +.+..|++..+.
T Consensus       329 ~~~glf~s~~fp~i~sl~~~~~g~-~~~~~s~~l~~-~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       329 TLCSAFMSLMFPTIYGIALKGLGQ-DTKYGAAGLVM-AI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHH-HH-hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            788899999999999999999975 44433333333 33 89999999999999954      477777764443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762|consensus

Probab=99.28  E-value=2.9e-11  Score=101.90  Aligned_cols=167  Identities=17%  Similarity=0.089  Sum_probs=144.9

Q ss_pred             HHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh
Q psy11010         67 IALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG  146 (256)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~  146 (256)
                      +...+.+.....+..++-.+ .++++..+...|........+-++.-++.+++..|+|+-+++..++.+..+-++..++.
T Consensus       378 ~~av~mG~g~~lv~tFLfWH-led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L  456 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWH-LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL  456 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence            33444455555566666555 47778788888988888888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHH
Q psy11010        147 RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIA-LGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL  225 (256)
Q Consensus       147 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~-~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~  225 (256)
                      .|.|..+...+++|+..+.++.+..+|++...|| +.|.++.++. ....++|..+|.+++|.+.+.+|-+..|.+.++.
T Consensus       457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giA  535 (618)
T KOG3762|consen  457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPP-GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIA  535 (618)
T ss_pred             cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-cchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHH
Confidence            9999999999999999999999999999999999 9999999996 5567899999999999999999999999998888


Q ss_pred             HHHHHhHhhh
Q psy11010        226 ALGDGCKCNY  235 (256)
Q Consensus       226 ~~~~~~~~~~  235 (256)
                      +++.+++...
T Consensus       536 cl~~l~~~~~  545 (618)
T KOG3762|consen  536 CLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHH
Confidence            8876665543

>PRK09848 glucuronide transporter; Provisional

Probab=99.27  E-value=4.5e-10  Score=96.64  Aligned_cols=148  Identities=14%  Similarity=0.099  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc----CchhHH-HHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV----GYSLPM-FTGFVI  135 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----G~r~~l-~~~~~~  135 (256)
                      ......+..+..+.......++++.|+++..|+++.++|.+..+..+..++..++.|+++||.    |||+.+ .++.+.
T Consensus         9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~   88 (448)
T PRK09848          9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP   88 (448)
T ss_pred             HHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence            334444455555555555566667788888999999999999999999999999999999996    766654 555554


Q ss_pred             HHHHHHHH-Hh----hc--hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHH-----HHHHhhhh
Q psy11010        136 MFLSTLIF-AF----GR--TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGL-----ALGVLIGP  203 (256)
Q Consensus       136 ~~~~~~~~-~~----~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~-----~lg~~~g~  203 (256)
                      ..+..++. ..    ..  ....+++...+.+++.+...++..++..+..+++++|.+..+....+.     .++..++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p  168 (448)
T PRK09848         89 LMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGP  168 (448)
T ss_pred             HHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433332 21    11  223344455678888888888888888887765367888777665433     34555666


Q ss_pred             hHHhh
Q psy11010        204 PFGGI  208 (256)
Q Consensus       204 ~i~~~  208 (256)
                      .+.+.
T Consensus       169 ~i~~~  173 (448)
T PRK09848        169 SIKNS  173 (448)
T ss_pred             HHHHh
Confidence            66554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.25  E-value=4.1e-10  Score=95.03  Aligned_cols=159  Identities=16%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             HHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC-chhHHHHHHHHHHHHHHHHHh
Q psy11010         67 IALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG-YSLPMFTGFVIMFLSTLIFAF  145 (256)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-~r~~l~~~~~~~~~~~~~~~~  145 (256)
                      ...++..+......|.++.++ ++.|.+..++|.+.++..+..+++++++|.++||++ +|+++.+..++.++..+....
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L-~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYL-ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666778888886 557899999999999999999999999999999986 567777777777777777777


Q ss_pred             hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhH-HhhhhhccC---chHHHHH
Q psy11010        146 GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPF-GGIMYQFVG---KTAPFLI  221 (256)
Q Consensus       146 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i-~~~l~~~~g---~~~~~~~  221 (256)
                      .++++.+++..++..+......|...++..+...   +++.-.|-.....++|-+++... .+.+....+   ....+++
T Consensus        88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~---~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG---DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc---cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            8888888888888888888888888888888874   33344455555555665555433 223333222   2344555


Q ss_pred             HHHHHHHH
Q psy11010        222 LSALALGD  229 (256)
Q Consensus       222 ~~~~~~~~  229 (256)
                      .+...++.
T Consensus       165 ~~~~~~ll  172 (400)
T PF03825_consen  165 AAILSLLL  172 (400)
T ss_pred             HHHHHHHH
Confidence            55544443

>KOG2532|consensus

Probab=99.25  E-value=1e-10  Score=100.13  Aligned_cols=178  Identities=17%  Similarity=0.080  Sum_probs=129.6

Q ss_pred             chHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCch--------hHH
Q psy11010         58 RRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYS--------LPM  129 (256)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--------~~l  129 (256)
                      +...++.+.++.+........+....|.|+.+.+|.+..+.|++.++..+.+.+..+++|+++||.-+|        |.+
T Consensus       256 ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  256 TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            345678888888888888888888999999999999999999999999999999999999999987552        222


Q ss_pred             -HHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHhhhhchhhhh-hhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH
Q psy11010        130 -FTGFVIMFLSTLIFAFGRT-YGVLFLARSLQGIGSSCSSVSG-MGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG  206 (256)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~-~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~  206 (256)
                       .++....++..+..++.++ .....+..+..+.+..+..... ..-..+.. + ++-+..+|+.+....+..+++|.+.
T Consensus       336 n~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-p-q~a~~l~g~~~~~~~~~~~~~P~~v  413 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-P-QHAGFVMGIINFVGALAGFIAPLLV  413 (466)
T ss_pred             HhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-c-hHHHHHHHHHHHHHHHHHHHHHHhe
Confidence             4455566666666666552 1111111222222222222222 22222324 3 8999999999999999999999999


Q ss_pred             hhhhhc---cCchHHHHHHHHHHHHHHhHhhhee
Q psy11010        207 GIMYQF---VGKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       207 ~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      +.+...   ..|+++|++.+++.++..++..++-
T Consensus       414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            999842   3699999999999998776655553

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.24  E-value=8.6e-10  Score=93.22  Aligned_cols=134  Identities=13%  Similarity=-0.002  Sum_probs=100.1

Q ss_pred             hhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHH-HHHHHHHHHHHHh--hchHHHHHHHHH
Q psy11010         81 DVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTG-FVIMFLSTLIFAF--GRTYGVLFLARS  157 (256)
Q Consensus        81 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~  157 (256)
                      ...+.++++.+|.++.+.+++.....++..++..+.+++.||++++...... .++..+.......  ..+.+.+....+
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA  307 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            3445566666899999999999999999999999999999999843332222 2222222222222  235566777788


Q ss_pred             HHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        158 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       158 l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      +.|++.+...+...++..|.+|  ++++.+.++.+....+|..+++.+++.+.+...+.
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFP--YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            9999999999999999999886  67899999999999999999999999887654333

>KOG3764|consensus

Probab=99.23  E-value=4.8e-11  Score=97.26  Aligned_cols=173  Identities=20%  Similarity=0.192  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC--chhHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG--YSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~l~~~~~~~~~~~~  141 (256)
                      .........+.......|.++.++.|.+..+..+.|...--..+.+.++..+.|.++||++  |-.....++++..+...
T Consensus       274 ~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~  353 (464)
T KOG3764|consen  274 LIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSG  353 (464)
T ss_pred             hhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhc
Confidence            3333444456677777888899888998866779999999999999999999999999999  43333455566666666


Q ss_pred             HHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc--c---hhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCch
Q psy11010        142 IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD--R---ERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT  216 (256)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~---~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~  216 (256)
                      ...+++++.++++-++..+++.+.................  +   ..|...++...++.+|..+||.++|.+.+..|++
T Consensus       354 ~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~  433 (464)
T KOG3764|consen  354 PIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE  433 (464)
T ss_pred             hhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence            7778999999999888888888887777666666665431  2   4478889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhhe
Q psy11010        217 APFLILSALALGDGCKCNYT  236 (256)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~  236 (256)
                      |...+.++..++..-+..+.
T Consensus       434 wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  434 WLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999988876655443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.22  E-value=6.8e-10  Score=98.72  Aligned_cols=157  Identities=12%  Similarity=0.097  Sum_probs=129.4

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHHHHHHHHHHHHhhch--------H
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFVIMFLSTLIFAFGRT--------Y  149 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~--------~  149 (256)
                      +...+..|+.+.+|.+.+.+..+...+....-+...++|+++|+ +|+++.+..+.++..++.++.++...        .
T Consensus         6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            34455667778899999999999999999999999999999995 69999999999999999888776421        2


Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhhhcccCc--chhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc-------CchHHHH
Q psy11010        150 GVLFLARSLQGIGSSCSSVSGMGMLAERYPDD--RERGNAMGIALGGLALGVLIGPPFGGIMYQFV-------GKTAPFL  220 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~-------g~~~~~~  220 (256)
                      ...+++..+..+|.|++-+...+...|.++++  ++|.+.+.++..+.++|+++++.+..++.+..       +|...|.
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            33667788899999999999999999999751  24678888999999999999999999887443       6999999


Q ss_pred             HHHHHHHHHHhHhhh
Q psy11010        221 ILSALALGDGCKCNY  235 (256)
Q Consensus       221 ~~~~~~~~~~~~~~~  235 (256)
                      +.++..+++.++...
T Consensus       166 i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       166 VPAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888887666544

>KOG2563|consensus

Probab=99.22  E-value=6.2e-10  Score=92.30  Aligned_cols=184  Identities=14%  Similarity=0.092  Sum_probs=131.7

Q ss_pred             cccccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHH
Q psy11010         53 KSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTG  132 (256)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~  132 (256)
                      +..++||..++...+..+.+.+....+.++ ..+....+| +....-|...++++.++...+.+-|+.||+|-|..++++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i-~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI-NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhH-HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            455777877777777777665555555444 334466677 777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc------hHH--HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhh
Q psy11010        133 FVIMFLSTLIFAFGR------TYG--VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP  204 (256)
Q Consensus       133 ~~~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~  204 (256)
                      .....+|..+-..+.      .++  ....++.+.+..+-.....-.-+..-||++ ++|..+..+-.++..+|..+|.+
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~-~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP-DQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc-chhhhhhhHHHhcchHHHHHHhh
Confidence            999999998776542      233  556777888777766666555667779998 99999998877777777777777


Q ss_pred             HHhhhhhcc------CchH--HHHHHHHHHHHHHhHhhheeec
Q psy11010        205 FGGIMYQFV------GKTA--PFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       205 i~~~l~~~~------g~~~--~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      +...+..+.      .|..  .|+...+++.+.+++..+..++
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~  237 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK  237 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            766665443      3443  3444444444444444343333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.17  E-value=3.3e-10  Score=94.59  Aligned_cols=119  Identities=15%  Similarity=0.168  Sum_probs=92.3

Q ss_pred             hchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh--hc--hHHHHH
Q psy11010         78 TVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF--GR--TYGVLF  153 (256)
Q Consensus        78 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~--~~--~~~~~~  153 (256)
                      ......+.+.++.+|.++.+.+++.++..+...++.++.|+++||+|+|+.+..+......+..+..+  ..  +.+..+
T Consensus       243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (366)
T TIGR00886       243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFI  322 (366)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence            34456677877888999999999999999999999999999999999998887777666666555443  22  555555


Q ss_pred             HHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHH
Q psy11010        154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALG  198 (256)
Q Consensus       154 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg  198 (256)
                      +...+.+++.|...+...+++.+..|  +++|++.|+.+....+|
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       323 VLFVALFFFSGAGNGSTFALVPHIFR--RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHhccccchhhhcchhhch--hhcccHHHHHHHhccCC
Confidence            55566666666666777788888885  79999999998877665

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.2e-09  Score=92.40  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      +...++..++..........+...|.+.-+|.++....+.......+..++.+++.++.+|+|+|+++.++.++.+++.+
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            33333344444455555556666666666777777777888888888888899999999999999999999999999998


Q ss_pred             HHHhhc--hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccC------cchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        142 IFAFGR--TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPD------DRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       142 ~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~------~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      +..+.+  +.+.+++..++.++|.+...+...++++|..+-      ++.-|...+......-+|..++..+.|++.+..
T Consensus       318 ~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         318 LLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            887755  677888888999999999999999999987632      134477788888899999999999999888765


Q ss_pred             Cc
Q psy11010        214 GK  215 (256)
Q Consensus       214 g~  215 (256)
                      |+
T Consensus       398 Gy  399 (467)
T COG2211         398 GY  399 (467)
T ss_pred             CC
Confidence            53

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.16  E-value=2.1e-09  Score=93.69  Aligned_cols=137  Identities=20%  Similarity=0.183  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHhhhHH----HHhhhhcCchhHHHHHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHhhhh
Q psy11010         98 VGVMFGSKAFVQLLANPLV----GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT---------YGVLFLARSLQGIGSS  164 (256)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~----g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g  164 (256)
                      .+++.++..+...+..++.    +++.+|++..+.+.+|.++.+++.+..+...+         .+++....++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777777666776666    66677777778889999999999888776544         4578889999999999


Q ss_pred             chhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh----------hccCchHHHHHHHHHHHHHHhHhh
Q psy11010        165 CSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY----------QFVGKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~----------~~~g~~~~~~~~~~~~~~~~~~~~  234 (256)
                      ...|...+++.+..|+ +.||+++|++.....+|..++..+.+...          ...++.+.|...++++++..++.+
T Consensus       398 ~~~p~g~s~~~~~aP~-~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        398 MISGLGLAMVAQLVPQ-RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHhHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998 99999999998887777777666654221          112367788777777665554444


Q ss_pred             h
Q psy11010        235 Y  235 (256)
Q Consensus       235 ~  235 (256)
                      .
T Consensus       477 ~  477 (500)
T PRK09584        477 L  477 (500)
T ss_pred             H
Confidence            4

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.16  E-value=1.4e-13  Score=118.39  Aligned_cols=156  Identities=17%  Similarity=0.114  Sum_probs=106.7

Q ss_pred             HHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH--h---hch----HHHHHHHHH
Q psy11010         87 RHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA--F---GRT----YGVLFLARS  157 (256)
Q Consensus        87 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~--~---~~~----~~~~~~~~~  157 (256)
                      +.+..+.+..  -.......+...++.+....+.||+|||++++.+.++.++..+..+  .   .++    -...++...
T Consensus       279 i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  356 (451)
T PF00083_consen  279 IFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLA  356 (451)
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence            3455666655  2233344455556666777999999999999999888888777664  1   111    111222222


Q ss_pred             HHHhhhh-chhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhhe
Q psy11010        158 LQGIGSS-CSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       158 l~G~~~g-~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      +...+.+ ...+....+.+|.+|. +.|+++.++......++.++++.+...+.+..+-...+.+.++++++..+..+++
T Consensus       357 l~~~~~~~g~~~~~~~~~~ElfPt-~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~  435 (451)
T PF00083_consen  357 LFFAFFSLGWGPLPWIYTAELFPT-KVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFF  435 (451)
T ss_pred             eccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEE
Confidence            2222222 3445566889999999 9999999999998899999999998888877664556777777777777777788


Q ss_pred             eecCCCCcc
Q psy11010        237 IVQKSSSHD  245 (256)
Q Consensus       237 ~~~~~~~~~  245 (256)
                      .||++.+..
T Consensus       436 lpET~g~~l  444 (451)
T PF00083_consen  436 LPETKGKTL  444 (451)
T ss_pred             EeeCCCCCH
Confidence            888765543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.15  E-value=3.3e-09  Score=89.73  Aligned_cols=184  Identities=13%  Similarity=0.105  Sum_probs=143.5

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh----cCc-hhHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR----VGY-SLPMFTGF  133 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~-r~~l~~~~  133 (256)
                      .+.-....+..+..+.........+..+.++..|+++..+|.+..+.-+--++.-|+.|.+.||    +|| |+.++++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            3344455555555666666666677778899999999999999999999999999999999995    675 56667777


Q ss_pred             HHHHHHHHHHHhhc------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHh
Q psy11010        134 VIMFLSTLIFAFGR------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGG  207 (256)
Q Consensus       134 ~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~  207 (256)
                      +-.++...++..++      +....++...+.+++......+..++.+|+.++.++|.+..+..+.+..+|..+...+..
T Consensus        91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~  170 (467)
T COG2211          91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP  170 (467)
T ss_pred             HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877776655      344566677889999999999999999999876689999999999998888777666665


Q ss_pred             hhhh-------ccCchHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        208 IMYQ-------FVGKTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       208 ~l~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      .+..       ..||+....+.+++.++..+..++..+|+..
T Consensus       171 plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         171 PLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             HHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            5443       2468888888888888877777776666554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.10  E-value=9e-09  Score=84.99  Aligned_cols=159  Identities=14%  Similarity=0.099  Sum_probs=131.3

Q ss_pred             HhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh-hcCchhHHHHHHHHHHHHHHHHHh---hchHH
Q psy11010         75 LLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH-RVGYSLPMFTGFVIMFLSTLIFAF---GRTYG  150 (256)
Q Consensus        75 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~l~~~~~~~~~~~~~~~~---~~~~~  150 (256)
                      .+++.-.++.+|-.+-+|++..+...+......+..++....|++.. |.++++.-.+++...+++..+..+   ..+.+
T Consensus       223 a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~  302 (403)
T PF03209_consen  223 AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPW  302 (403)
T ss_pred             HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            33344456777788889999999999999999999999999998877 677888888888888877765544   45778


Q ss_pred             HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc----------cCchHHHH
Q psy11010        151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF----------VGKTAPFL  220 (256)
Q Consensus       151 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~----------~g~~~~~~  220 (256)
                      .+....++.|++.|.......+.+.+...+ ++.|..+|.++....+...++-.++|.+.|.          .+|..+|.
T Consensus       303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~-~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~  381 (403)
T PF03209_consen  303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSA-GRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA  381 (403)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            888999999999999999999999999998 8999999999999999999999999987653          24677777


Q ss_pred             HHHHHHHHHHhHhh
Q psy11010        221 ILSALALGDGCKCN  234 (256)
Q Consensus       221 ~~~~~~~~~~~~~~  234 (256)
                      +.++..+++..+..
T Consensus       382 lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  382 LEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.09  E-value=5.6e-09  Score=90.69  Aligned_cols=140  Identities=19%  Similarity=0.190  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhcCchhH-------HHHHHHHHHHHHHHHH-----hh-----chHHHHHHHHHHHH
Q psy11010         98 VGVMFGSKAFVQLLANPLVGILTHRVGYSLP-------MFTGFVIMFLSTLIFA-----FG-----RTYGVLFLARSLQG  160 (256)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G  160 (256)
                      .+++.++..+...+..|+.+++.||+++|+.       +.+|.++.+++.+..+     +.     .+.+++....++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4566667777888899999999999998873       6777777777764321     21     35677778889999


Q ss_pred             hhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh----------ccCchHHHHHHHHHHHHHH
Q psy11010        161 IGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ----------FVGKTAPFLILSALALGDG  230 (256)
Q Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~----------~~g~~~~~~~~~~~~~~~~  230 (256)
                      +|.+...+...+++.+..|+ +.++.++|+++....+|..+|..++.....          ...+.+.|...++.+++..
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~-~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  469 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQ-HLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVA  469 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 999999999999999999999888765521          1125677777777777666


Q ss_pred             hHhhheee
Q psy11010        231 CKCNYTIV  238 (256)
Q Consensus       231 ~~~~~~~~  238 (256)
                      ++.+...|
T Consensus       470 v~~~~~~~  477 (489)
T PRK10207        470 VVMALMVP  477 (489)
T ss_pred             HHHHHHHH
Confidence            65555443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.08  E-value=1.6e-09  Score=93.62  Aligned_cols=126  Identities=13%  Similarity=0.070  Sum_probs=110.1

Q ss_pred             HhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh----------hchHHHHHHHHH
Q psy11010         88 HKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF----------GRTYGVLFLARS  157 (256)
Q Consensus        88 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  157 (256)
                      .+.+|.++...|.+.....++.+++....+++.+|++.|+++.++.++.+++.+....          .++.+.+....+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            4568999999999999999999999999999999999999999999988887755431          133334455678


Q ss_pred             HHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC
Q psy11010        158 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG  214 (256)
Q Consensus       158 l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g  214 (256)
                      +.+++.+..+.+...++++..|+ +++|+..++.++..++|..+++.+++.+.++.|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~-~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPS-GCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCC-CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88999999999999999999998 999999999999999999999999999998876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.08  E-value=7.4e-09  Score=84.95  Aligned_cols=166  Identities=15%  Similarity=0.031  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+....++.|+.-........+++.++.+..|.++.+.+...+.+..+.++++.+..++..|+...|.+....++..+-+
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~  316 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            34444444444444555556777888777789999999999999999999999999999999999999999888888888


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHH
Q psy11010        141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFL  220 (256)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~  220 (256)
                      +...+.++... +.+.++.|+..++.+|...++..+..|.  +-.. .|..-.+..+|+.+-|.+.|++.|+.|-...+.
T Consensus       317 ~~~~l~~g~v~-~~~l~~ig~F~simfPTIfslal~~l~~--~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         317 LAVALIGGVVA-LYALFLIGLFNSIMFPTIFSLALKNLGE--HTSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHHhcChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCc--cccc-cceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            88888888544 4556789999999999999999999974  3322 333334555788899999999999999888777


Q ss_pred             HHHHHHHHHH
Q psy11010        221 ILSALALGDG  230 (256)
Q Consensus       221 ~~~~~~~~~~  230 (256)
                      ....+|.+..
T Consensus       393 ~~pllc~lyV  402 (422)
T COG0738         393 IVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.07  E-value=2.3e-08  Score=85.20  Aligned_cols=165  Identities=12%  Similarity=0.004  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      ..+..++............|.++++.+|.++.+.++.......+..++..+.+++.++..+++.+.....+..++.++..
T Consensus       223 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~  302 (413)
T PRK15403        223 GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLI  302 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence            33333333334444445567777788899999999998888888888888888876554444433322233333332222


Q ss_pred             -----hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHH
Q psy11010        145 -----FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPF  219 (256)
Q Consensus       145 -----~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~  219 (256)
                           ..+++...++..++.++|.+...+......-... + ..+|++.++.+.....+..+++.+++++.++ +-.+.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~-~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~  379 (413)
T PRK15403        303 VGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-N-LPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPF  379 (413)
T ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-C-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHH
Confidence                 1233434567788889999988887765332222 2 4679999999998888899999999988776 556667


Q ss_pred             HHHHHHHHHHHhH
Q psy11010        220 LILSALALGDGCK  232 (256)
Q Consensus       220 ~~~~~~~~~~~~~  232 (256)
                      ...+++..+....
T Consensus       380 ~~~~~~~~~~~~~  392 (413)
T PRK15403        380 HLLAVVAGVIVVF  392 (413)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555544333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.06  E-value=2.2e-08  Score=80.62  Aligned_cols=154  Identities=25%  Similarity=0.380  Sum_probs=117.6

Q ss_pred             hHhhhchhhhHHHHHhhhcCcc--hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhch--H
Q psy11010         74 MLLTTVEDVARENRHKYLMGET--KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT--Y  149 (256)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~--~  149 (256)
                      ..........+.+ ..+.+.+.  ...++..+...++..++.++.|++.||+|||+.+..+.....++.++..+..+  .
T Consensus        16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T COG0477          16 LDLGLLSPALPLL-LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL   94 (338)
T ss_pred             HhcchHHHHHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence            3333333444444 34444444  47899999999999999999999999999998888887765666666666655  8


Q ss_pred             HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHH-HHHHHHhhhhhHHhhhhhc--cCchHHHHHHHHHH
Q psy11010        150 GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQF--VGKTAPFLILSALA  226 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~-~~~lg~~~g~~i~~~l~~~--~g~~~~~~~~~~~~  226 (256)
                      +.+.+.|++.|++.+...+...+++.|.+|+.++|+...+.... ...+|..++|.+++.+...  .+|+..|.......
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477          95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            88889999999999999999999999999720278888888877 6888889998887776654  57888776666655


Q ss_pred             HH
Q psy11010        227 LG  228 (256)
Q Consensus       227 ~~  228 (256)
                      ..
T Consensus       175 ~~  176 (338)
T COG0477         175 LL  176 (338)
T ss_pred             HH
Confidence            44

>KOG2816|consensus

Probab=99.06  E-value=1.1e-08  Score=87.58  Aligned_cols=133  Identities=25%  Similarity=0.436  Sum_probs=111.6

Q ss_pred             HHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhh--hhchhhhhhhhhhhcccCcch
Q psy11010        106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIG--SSCSSVSGMGMLAERYPDDRE  183 (256)
Q Consensus       106 ~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~--~g~~~~~~~~~~~~~~~~~~~  183 (256)
                      .+...+.++..|.++||+|||..+........+..+...+..  +++++   +.++.  .+..+....++++|.... ++
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~-~~  145 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSE-EE  145 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccch-hH
Confidence            677888999999999999999999999988888888777765  33333   44433  334566678999999997 99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCCCCc
Q psy11010        184 RGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSH  244 (256)
Q Consensus       184 r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (256)
                      |....|+.+.....+..++|.+++.+.+..|.-..|.+..+..++..+...+..||+..++
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            9999999999999999999999999999999999999999999998888888887755443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.97  E-value=7.4e-08  Score=82.81  Aligned_cols=183  Identities=11%  Similarity=0.026  Sum_probs=137.5

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhh-hcCcch----------hHHHHHHHHHHHHHHhhhHHHHhhhhcCc-h
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKY-LMGETK----------AVGVMFGSKAFVQLLANPLVGILTHRVGY-S  126 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r  126 (256)
                      .+.+..+++..++..++...+......++.++ ++-++.          .-.+....+.+...+.+++..++.+|+|+ |
T Consensus       257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k  336 (477)
T TIGR01301       257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK  336 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            34566777777777777777666666666543 332211          12344555666666777888899999995 7


Q ss_pred             hHHHHHHHHHHHHHHHHHhhch---------------------HHHHHHHHHHHHhhhhchhhhhhhhhhhcccC-cchh
Q psy11010        127 LPMFTGFVIMFLSTLIFAFGRT---------------------YGVLFLARSLQGIGSSCSSVSGMGMLAERYPD-DRER  184 (256)
Q Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~r  184 (256)
                      .+...+.++.+++.+...+.++                     .+..++...+.|+..+..+..-++++++..++ +++.
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~  416 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ  416 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence            7779998888888877765442                     25667778889999999999999999999985 1455


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHhhhhhccC--chHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        185 GNAMGIALGGLALGVLIGPPFGGIMYQFVG--KTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       185 ~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      |..+|+.|.+..+..++..+..|.+.+..|  -.+++.+.++..+++.+..++.+|+.+
T Consensus       417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999988888665544  667888899999998888888877654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11462 putative transporter; Provisional

Probab=98.96  E-value=6.8e-08  Score=83.43  Aligned_cols=121  Identities=16%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHhhhhchhhhhhh
Q psy11010         95 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR--TYGVLFLARSLQGIGSSCSSVSGMG  172 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~  172 (256)
                      +...+.+...+.++.+++.+++++++||+|+|+++..+..+.++..++..+.+  +...+++..++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777888888999999999999999999987765554444333333322  2333445556678877777766677


Q ss_pred             hhhhcccC------cchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        173 MLAERYPD------DRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       173 ~~~~~~~~------~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      +++|..+-      ++..|...+.......+|..+++.++|++.+..|+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77776541      03335556777788999999999999988876554

>KOG3626|consensus

Probab=98.96  E-value=6.5e-09  Score=91.82  Aligned_cols=179  Identities=21%  Similarity=0.242  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST  140 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~  140 (256)
                      .+.++++..+..++....+...+.. +++.++++.++.|++.+.+-++..+...+..+..-|..|-+.+-+|.++++++.
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~Itt-iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITT-IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            3455556666666666444444444 588899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh--------------------c---------------------------h----HH-HHHHHHHHHHhhhhchhh
Q psy11010        141 LIFAFG--------------------R---------------------------T----YG-VLFLARSLQGIGSSCSSV  168 (256)
Q Consensus       141 ~~~~~~--------------------~---------------------------~----~~-~~~~~~~l~G~~~g~~~~  168 (256)
                      +++++-                    +                           +    ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            988751                    0                           0    22 567789999999999999


Q ss_pred             hhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc------------------cC-chHHHHHHHHHHHHH
Q psy11010        169 SGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF------------------VG-KTAPFLILSALALGD  229 (256)
Q Consensus       169 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~------------------~g-~~~~~~~~~~~~~~~  229 (256)
                      ...+|+-|...+ ++-...+|+......+|-++|-++++++...                  .| |..-|++.+.+.++.
T Consensus       257 lGisYiDDnvk~-~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  257 LGISYIDDNVKK-KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             CCCccccccccc-cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            999999999997 8999999999999999999999999887642                  12 777888899998888


Q ss_pred             HhHhhheeecCC
Q psy11010        230 GCKCNYTIVQKS  241 (256)
Q Consensus       230 ~~~~~~~~~~~~  241 (256)
                      .+..+++.++.+
T Consensus       336 a~p~f~fPk~lp  347 (735)
T KOG3626|consen  336 AVPLFFFPKELP  347 (735)
T ss_pred             HHHHHhCcccCc
Confidence            887777655444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.91  E-value=1.7e-10  Score=100.59  Aligned_cols=173  Identities=18%  Similarity=0.202  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~  144 (256)
                      +++..+.+ .....+......-+++.++++.++.|++.+.+-++..+..++..++.+|..|-+.+-.|.++++++.++++
T Consensus         8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            33334444 33333333333345899999999999999999999999999999999998888889999999999998876


Q ss_pred             hh------------c--------------------------------------hHHHHHHHHHHHHhhhhchhhhhhhhh
Q psy11010        145 FG------------R--------------------------------------TYGVLFLARSLQGIGSSCSSVSGMGML  174 (256)
Q Consensus       145 ~~------------~--------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~  174 (256)
                      +-            .                                      -+..+++++++.|+|....++...+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            40            0                                      024477789999999999999999999


Q ss_pred             hhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc---------------------cC-chHHHHHHHHHHHHHHhH
Q psy11010        175 AERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF---------------------VG-KTAPFLILSALALGDGCK  232 (256)
Q Consensus       175 ~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~  232 (256)
                      -|..++ ++-+..+|++.....+|..+|-.+++.+...                     .| |...|++.+++.++..+.
T Consensus       167 DDnv~~-~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip  245 (539)
T PF03137_consen  167 DDNVSK-KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP  245 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc-ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 9999999999999999999999998876532                     13 777788888888887777


Q ss_pred             hhheeec
Q psy11010        233 CNYTIVQ  239 (256)
Q Consensus       233 ~~~~~~~  239 (256)
                      .+++.++
T Consensus       246 l~~FPk~  252 (539)
T PF03137_consen  246 LFFFPKK  252 (539)
T ss_dssp             -------
T ss_pred             HHcCCcc
Confidence            6665543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.89  E-value=1.5e-07  Score=77.80  Aligned_cols=127  Identities=19%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             HHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC-----chhHHHHH-HHHHHHHHHHHHh-----hc--------
Q psy11010         87 RHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG-----YSLPMFTG-FVIMFLSTLIFAF-----GR--------  147 (256)
Q Consensus        87 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~l~~~-~~~~~~~~~~~~~-----~~--------  147 (256)
                      +..|++++..-.+.+.++..+... .++.+|+.+|+.+     ||..+++. .++...+..+..+     +.        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            567899999999999998888765 6999999999998     88777654 4555554444443     12        


Q ss_pred             h-HH--HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        148 T-YG--VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       148 ~-~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      . .+  ...+...+.|+|.+...+...+++.|..|+ ++|+++.++...+.-+|.+++..+.+.+.+.+..
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~  154 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP  154 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            1 12  233456679999999999999999999998 9999999999999999999999999998887653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254|consensus

Probab=98.87  E-value=1.7e-07  Score=82.18  Aligned_cols=183  Identities=12%  Similarity=0.012  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL  138 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~  138 (256)
                      .+.+..+.+..+....+...+....+.. -+..|.+... .+...+..+...++..+...+.||+|||+.++.+.+.+.+
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence            3344444555555545555555555555 4555655433 5666667777777788889999999999999999999999


Q ss_pred             HHHHHHhhchH-------------HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhH
Q psy11010        139 STLIFAFGRTY-------------GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPF  205 (256)
Q Consensus       139 ~~~~~~~~~~~-------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i  205 (256)
                      +.++++.....             ..+....+..........+....+.+|.+|. +.|+++.++......+...+-...
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-~~r~~~~s~~~~~n~~~~~~v~~~  450 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-RLRSKGASLAVAVNWLWNFLISFF  450 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-hHHhhhHHHHHHHHHHHHHHHHHH
Confidence            98877653111             1111122222222333445556788999998 999999999776666655554333


Q ss_pred             HhhhhhccCchHHHHHHHHHHHHHHh-HhhheeecCCCCc
Q psy11010        206 GGIMYQFVGKTAPFLILSALALGDGC-KCNYTIVQKSSSH  244 (256)
Q Consensus       206 ~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  244 (256)
                      .-.+.+..++...|...+..+.+..+ ..+++.||.+...
T Consensus       451 ~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  451 FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence            33444443345667777777777666 6677777766543

>KOG4686|consensus

Probab=98.84  E-value=3.7e-10  Score=88.38  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=122.3

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFVI  135 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~~  135 (256)
                      +|...++.+|+..+...+++-.-. .+..+...+.++..++..++.+++..-+++.+.++|++.|| +|-|..-++-++.
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~-alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f  119 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPG-ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF  119 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCch-hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence            344455555555555555544332 23444467778888899999999999999999999999996 6777766666666


Q ss_pred             HHHHHHHHH---hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        136 MFLSTLIFA---FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       136 ~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      ..++-++++   ..+.+|.+.++|++.|+|.-....+-+.++..||.. |+.+.++|+......+|..+--.+.+++++.
T Consensus       120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-KELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-KELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecC-ccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            667766664   468899999999999999887878889999999997 9999999999999999999988888888875


Q ss_pred             c
Q psy11010        213 V  213 (256)
Q Consensus       213 ~  213 (256)
                      .
T Consensus       199 ~  199 (459)
T KOG4686|consen  199 M  199 (459)
T ss_pred             H
Confidence            3

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.82  E-value=1.3e-07  Score=80.98  Aligned_cols=155  Identities=19%  Similarity=0.237  Sum_probs=120.7

Q ss_pred             HHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc---C--chhHHHHHHHHHHHHHHHHHhh----chHHHHHH
Q psy11010         84 RENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV---G--YSLPMFTGFVIMFLSTLIFAFG----RTYGVLFL  154 (256)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---G--~r~~l~~~~~~~~~~~~~~~~~----~~~~~~~~  154 (256)
                      .+++.+++|.++++...+.++..+... ..++.|.++|.+   |  ||+-++++.++..++.+.++..    .+.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            445689999999999998888888775 588899999976   2  4555566666665555545442    35566667


Q ss_pred             HHHHHHhhhhchhhhhhhhhhhcccCc-chhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHh
Q psy11010        155 ARSLQGIGSSCSSVSGMGMLAERYPDD-RERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKC  233 (256)
Q Consensus       155 ~~~l~G~~~g~~~~~~~~~~~~~~~~~-~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  233 (256)
                      ..++..+|.........+++.|....+ +.||...+.......+|.+++..+.|.+.+..+++..|.+.+.+.++..+..
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~  171 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVA  171 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHH
Confidence            778888999999999999999987431 3477888888889999999999999999999999999999888887776666


Q ss_pred             hheeec
Q psy11010        234 NYTIVQ  239 (256)
Q Consensus       234 ~~~~~~  239 (256)
                      ++..+|
T Consensus       172 ~~~~~e  177 (433)
T PF03092_consen  172 LFLLEE  177 (433)
T ss_pred             HHhhhh
Confidence            665554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0252|consensus

Probab=98.81  E-value=1.4e-08  Score=84.50  Aligned_cols=181  Identities=16%  Similarity=0.022  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHH--------HHHHHH-HHHHHhhhHHHHhhhhcCchhHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGV--------MFGSKA-FVQLLANPLVGILTHRVGYSLPMF  130 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~-~~~~~~~~~~g~l~dr~G~r~~l~  130 (256)
                      ..++..+...|+.-...+...-.... +-+..|..+.....        ...+.. .++..+-.+...++|++|||+..+
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~-I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~  382 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSV-IFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQL  382 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHH-HHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHH
Confidence            45555666666544444444333333 33545555543333        111111 122234555677899999999999


Q ss_pred             HHHHHHHHHHHHHHhhch----HHHHHHHHHH-HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhH
Q psy11010        131 TGFVIMFLSTLIFAFGRT----YGVLFLARSL-QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPF  205 (256)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l-~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i  205 (256)
                      -|++++.+..+..+..-|    ...+++...+ +=++.-+-......+.+|.+|. +.|+++-|+.....-.|+++|...
T Consensus       383 ~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa-rvR~t~hGIsAA~GK~GAivg~~~  461 (538)
T KOG0252|consen  383 MGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA-RVRSTCHGISAASGKAGAIVGAFG  461 (538)
T ss_pred             hhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchH-HHhhhhhhHHHHhccchHHHHHHH
Confidence            999999999888877544    1122222222 2222333445556788999999 999999999999999999999999


Q ss_pred             Hhhhhh-----ccCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        206 GGIMYQ-----FVGKTAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       206 ~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      ..++.+     ..+.++++++.+...++..+..+ +.||++.+
T Consensus       462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~  503 (538)
T KOG0252|consen  462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGK  503 (538)
T ss_pred             hhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeeccccc
Confidence            999998     67899999999999988655554 45555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.77  E-value=1.7e-06  Score=74.73  Aligned_cols=145  Identities=15%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHH-HHHHHHHHHHHhh-c-hHHHHHHHHHHHHhhhhchhhhhhhh
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGF-VIMFLSTLIFAFG-R-TYGVLFLARSLQGIGSSCSSVSGMGM  173 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~~  173 (256)
                      ..++..++..+..++..|+.|.++|+-++||.++... ++..+...++.+. + +++...+..++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999776665544 4444555555553 3 34444444555667778888888999


Q ss_pred             hhhcccCcchh--------------------------hHHHHHHHHHHHHHHhhhhhHHhhhhhc--------cCchHHH
Q psy11010        174 LAERYPDDRER--------------------------GNAMGIALGGLALGVLIGPPFGGIMYQF--------VGKTAPF  219 (256)
Q Consensus       174 ~~~~~~~~~~r--------------------------~~~~g~~~~~~~lg~~~g~~i~~~l~~~--------~g~~~~~  219 (256)
                      +.|..++ +.+                          ++..+.-....++|+++.-.+.-.+...        .+.|..+
T Consensus       151 LP~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  151 LPDLARP-EPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             hHhhcCC-ChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            9999997 777                          8888888888888888776665544321        2358888


Q ss_pred             HHHHHHHHHHHhHhhheeecCCC
Q psy11010        220 LILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      .+.++..++..+..++..|++++
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCC
Confidence            99998888878887877777655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.72  E-value=1e-06  Score=77.34  Aligned_cols=148  Identities=15%  Similarity=0.136  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcc---hhHHHHHHHHHHHHHHhhhHHHHhhhhcCc-hhHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGET---KAVGVMFGSKAFVQLLANPLVGILTHRVGY-SLPMFTGFVI  135 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~l~~~~~~  135 (256)
                      +.+...+++.++.++.+.....+.|.....-++.++   ...++......++..+++.+.|.+..+++| |+.++++.++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            456666666666666666655666665555555544   257888888999999999999999988876 4455577666


Q ss_pred             HHHHHHHHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhh
Q psy11010        136 MFLSTLIFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGI  208 (256)
Q Consensus       136 ~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~  208 (256)
                      +.++.-+++.  .+|....+...++.|++.|.........+.-..|+ ++-+.+.|+..+...+|+.+|..+...
T Consensus       390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~-~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD-EDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc-hHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6655444433  34555666778899999999888877777778887 999999999999999998888877643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.71  E-value=2.8e-06  Score=71.08  Aligned_cols=161  Identities=12%  Similarity=0.060  Sum_probs=126.5

Q ss_pred             hHhhhchhhhHHHHHhh-hcCcchhHH-HHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHH
Q psy11010         74 MLLTTVEDVARENRHKY-LMGETKAVG-VMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV  151 (256)
Q Consensus        74 ~~~~~~~~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~  151 (256)
                      -..--..|++.+|+.+. .|++..++. -+.-...-.+....++...+.|..+.|++++.+.+...+...++.+.++...
T Consensus        17 ~~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~   96 (412)
T PF01770_consen   17 KEFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLA   96 (412)
T ss_pred             HhcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence            34445567777777665 788877754 5566666777888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc--cCchHHHHHHHHHHHHH
Q psy11010        152 LFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF--VGKTAPFLILSALALGD  229 (256)
Q Consensus       152 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~--~g~~~~~~~~~~~~~~~  229 (256)
                      +-+..++.|++.+. ..+..+++-...++ ++--++.+....+.-+|..++..++-.+...  .+++....+......++
T Consensus        97 mq~~q~~yg~~~a~-evay~sYiys~v~~-~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a  174 (412)
T PF01770_consen   97 MQLMQFFYGLATAA-EVAYYSYIYSVVDK-EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLA  174 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHheeecCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999998776 55568899999987 8888999998888888888888888777653  34666666655555554


Q ss_pred             HhHhhhe
Q psy11010        230 GCKCNYT  236 (256)
Q Consensus       230 ~~~~~~~  236 (256)
                      .+..+++
T Consensus       175 ~~~~~fL  181 (412)
T PF01770_consen  175 LLIALFL  181 (412)
T ss_pred             HHHHHHc
Confidence            5554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=98.65  E-value=2.3e-07  Score=75.97  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=77.1

Q ss_pred             hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc------------
Q psy11010        145 FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF------------  212 (256)
Q Consensus       145 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~------------  212 (256)
                      ..++++.++++.++.|.|.+...+..++++++..++ +++.+.+++.+.++++|..++|.+++.+...            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~-~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPI-ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc-chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            457899999999999999999999999999999998 8999999999999999999999999987732            


Q ss_pred             ----cCchHHHHHHHHHHHHHHhHhhh
Q psy11010        213 ----VGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       213 ----~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                          .+|+++|++.+.+.++..++..+
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                36999999777665555544433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.62  E-value=4.9e-06  Score=60.58  Aligned_cols=110  Identities=15%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcc
Q psy11010         99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERY  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  178 (256)
                      -.-.++......+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+..+.....++.+..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            344555666677788888899999999999999999888655544 4556778899999999999999999999999999


Q ss_pred             cCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010        179 PDDRERGNAMGIALGGLALGVLIGPPFGGIMY  210 (256)
Q Consensus       179 ~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~  210 (256)
                      .+ +.+++..+++-.....+.++|.++.-.+.
T Consensus       119 ~~-~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  119 TE-ETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87 99999999988877788888877765554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615|consensus

Probab=98.62  E-value=5.9e-07  Score=73.43  Aligned_cols=145  Identities=17%  Similarity=0.256  Sum_probs=119.7

Q ss_pred             HHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC--chhHHHHHHHHHHHHHHHHH
Q psy11010         67 IALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG--YSLPMFTGFVIMFLSTLIFA  144 (256)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~l~~~~~~~~~~~~~~~  144 (256)
                      +-.++....+..+......+..+.+|.++.+.|-+.+...+.+.+.+....+..||..  -+-.+..++.++.-..++.+
T Consensus       268 l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls  347 (451)
T KOG2615|consen  268 LHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS  347 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh
Confidence            3333333333333333344445679999999999999999999999999999999987  67777777777777777888


Q ss_pred             hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        145 FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       145 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      .+.....+..+..+-.+..+...+....++....|. ++||..+|+......++.++||.++|.+..+
T Consensus       348 ~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~-~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  348 LARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ-SQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             ccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc-ccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            888888889999999999999999999999999998 9999999999999999999999999887654

>KOG0637|consensus

Probab=98.61  E-value=1.7e-07  Score=78.13  Aligned_cols=148  Identities=17%  Similarity=0.174  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh----hcCchhHHH-HHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH----RVGYSLPMF-TGFV  134 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~l~-~~~~  134 (256)
                      +.+.......+...++...-..+.++|+ +++|++..+.+.+.....+...+.+|+.|..+|    |||||+.++ .+..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            4445555555555666666667778875 679999999999999999999999999999999    588776665 4566


Q ss_pred             HHHHHHHHHHhhchH-----------------HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhH-HHHHHHHHHH
Q psy11010        135 IMFLSTLIFAFGRTY-----------------GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGN-AMGIALGGLA  196 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~-----------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~-~~g~~~~~~~  196 (256)
                      ...++.++..++.++                 ..++++.-+.=++......+.-+++.|.... +++.+ +++.+..+.+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~-d~~~~~Ans~f~~f~a  189 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG-DAKKTRANSVFSFFMA  189 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC-hhhhhccchhHHHHHH
Confidence            677777777765432                 2234444455566667888889999999987 55555 9999999999


Q ss_pred             HHHhhhhhHHhhh
Q psy11010        197 LGVLIGPPFGGIM  209 (256)
Q Consensus       197 lg~~~g~~i~~~l  209 (256)
                      +|+.+|..+++++
T Consensus       190 vGnvLGY~~g~y~  202 (498)
T KOG0637|consen  190 VGNVLGYALGSYL  202 (498)
T ss_pred             hcceeeeeccccc
Confidence            9999998888743

>KOG2533|consensus

Probab=98.61  E-value=1.8e-07  Score=80.72  Aligned_cols=162  Identities=9%  Similarity=0.049  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh----cCchhHHHHHHHH-
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHR----VGYSLPMFTGFVI-  135 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~l~~~~~~-  135 (256)
                      .++..+++.+......+.+...+|.++.+..|.+..+.+.+.+.+.++.+++.+++|.++||    ..+|........+ 
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44555566666566666666777778766567899999999999999999999999999999    6666666555444 


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchh-hHHHHHHHHHHHH-HHhhhhhHHhhhhhcc
Q psy11010        136 MFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER-GNAMGIALGGLAL-GVLIGPPFGGIMYQFV  213 (256)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r-~~~~g~~~~~~~l-g~~~g~~i~~~l~~~~  213 (256)
                      ..++.+......+........+....+.....+......++...+ +.| -...+.+..+.+. |.+.+++..+.....+
T Consensus       354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g-~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y  432 (495)
T KOG2533|consen  354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAG-NTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY  432 (495)
T ss_pred             HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccc-hHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence            444434444444344444444445555666677778888888765 444 3444444444444 4444444445556667


Q ss_pred             CchHHHHHHH
Q psy11010        214 GKTAPFLILS  223 (256)
Q Consensus       214 g~~~~~~~~~  223 (256)
                      +|.+.|....
T Consensus       433 ~~~~~f~~~~  442 (495)
T KOG2533|consen  433 GWGAVFYMLV  442 (495)
T ss_pred             hhhhHHHHHH
Confidence            8888884433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.59  E-value=5.4e-07  Score=57.41  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=58.0

Q ss_pred             HHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHH
Q psy11010         66 AIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIM  136 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~  136 (256)
                      -...++.........|..+.+. ++.|.++.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~-~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYL-KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhh-hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3444555566667788888886 568999999999999999999999999999999999988887765543

>KOG1237|consensus

Probab=98.58  E-value=3.1e-06  Score=74.41  Aligned_cols=181  Identities=14%  Similarity=0.028  Sum_probs=138.6

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGF  133 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~~  133 (256)
                      +...|+....+.....+.......+..-+..|+.++++.+...+.-.++.+.-........+++++|-| ||-+.+.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            344555555555555566666655555566677889999888888888888888888889999999975 8889999998


Q ss_pred             HHHHHHHHHHHhhch-------------------------HHHHHHHHHHHHhhhhchhhhhhhhhhhccc---Ccchh-
Q psy11010        134 VIMFLSTLIFAFGRT-------------------------YGVLFLARSLQGIGSSCSSVSGMGMLAERYP---DDRER-  184 (256)
Q Consensus       134 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~---~~~~r-  184 (256)
                      ++..++..+..+...                         ...++.+..+..+|.|+.-+...++-+|.++   +++.+ 
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            888888655543211                         2356667778889999999999999999997   21223 


Q ss_pred             -hHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        185 -GNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       185 -~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                       ...+.++....++|..++..+.-++-+..+|.+.|.+..+..+++.++.+.
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence             377888999999999999888888888899999999988887776655543

>PTZ00207 hypothetical protein; Provisional

Probab=98.57  E-value=3.3e-06  Score=74.47  Aligned_cols=176  Identities=9%  Similarity=-0.032  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhh-cCcc-hhHHH-HHHHHHHHHHHhhhHHHHhhhhcC--------chh
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYL-MGET-KAVGV-MFGSKAFVQLLANPLVGILTHRVG--------YSL  127 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~-~~~~~~~~~~~~~~~~g~l~dr~G--------~r~  127 (256)
                      ...++++++..+........+..-+.+. .+.+ |.+. .+... ++++..+++.+|.+..|.+....-        +|+
T Consensus       352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI-~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt  430 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGAHFVIIFNARFI-YTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPIT  430 (591)
T ss_pred             chhHHHHHHHHHHhhCchheeeecHHHH-HHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchh
Confidence            3455566655554333333333333333 4556 5522 32222 789999999999999998872221        223


Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhh-hhHH
Q psy11010        128 PMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIG-PPFG  206 (256)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g-~~i~  206 (256)
                      ..+....++.++.+++.+.-....+++..++.|++.|..++.....++|+|.  |+-|+-..+......+|.++- -.+.
T Consensus       431 ~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg--k~~g~~yN~~~~a~pigs~~~n~~l~  508 (591)
T PTZ00207        431 IALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA--KDPAKHYNFCFLGSVLSAIFLNRLLY  508 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc--cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence            3333333366666666665433678999999999999999999999999995  688888888888888887775 5567


Q ss_pred             hhhhhc----------cC---chHHHHHHHHHHHHHHhHhhhee
Q psy11010        207 GIMYQF----------VG---KTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       207 ~~l~~~----------~g---~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      |.++|+          .|   ++.+|++.+++++.+.+......
T Consensus       509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            777754          13   78999999999998887765544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.56  E-value=4e-06  Score=72.57  Aligned_cols=131  Identities=13%  Similarity=0.066  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhcCc--hh----H-HHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHh
Q psy11010         98 VGVMFGSKAFVQLLANPLVGILTHRVGY--SL----P-MFTGFVIMFLSTLIFAFG---------RTYGVLFLARSLQGI  161 (256)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~--r~----~-l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~  161 (256)
                      .+|..+++.+..++.+|+.+++=.|..+  |.    . +.+|+++.+++.+.+.++         .+.+++++..+++++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5788888999888888888877666532  21    1 577888888887666431         256778888999999


Q ss_pred             hhhchhhhhhhhhhhcccCcchhhHHHHHHHHH-HHHHHhhhhhHHhhhhhc------------cCchHHHHHHHHHHHH
Q psy11010        162 GSSCSSVSGMGMLAERYPDDRERGNAMGIALGG-LALGVLIGPPFGGIMYQF------------VGKTAPFLILSALALG  228 (256)
Q Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~-~~lg~~~g~~i~~~l~~~------------~g~~~~~~~~~~~~~~  228 (256)
                      |.-...|...+.+++..|+ +.||+.+|.+... ..+|..++..+++.....            ..+...|...+...++
T Consensus       390 gEl~~sPvgls~~~~laP~-~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIP-GVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHChHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999998 9999999998663 357776666666554311            1255567777766665


Q ss_pred             H
Q psy11010        229 D  229 (256)
Q Consensus       229 ~  229 (256)
                      .
T Consensus       469 ~  469 (493)
T PRK15462        469 C  469 (493)
T ss_pred             H
Confidence            5

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.52  E-value=9.8e-07  Score=56.77  Aligned_cols=79  Identities=11%  Similarity=0.021  Sum_probs=68.9

Q ss_pred             HhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHH
Q psy11010         73 NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVL  152 (256)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (256)
                      +.+.+.+.|++|. ++++.++|.++.|++.+.+.+|+.++.+...++.++..+++.+..+.+...+..+.+++.++.+..
T Consensus         5 GigRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    5 GIGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            4455566677666 578899999999999999999999999999999999888999999999999999999998877654

Note that many members are hypothetical proteins.

>KOG0255|consensus

Probab=98.43  E-value=2.5e-05  Score=68.70  Aligned_cols=143  Identities=19%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHH---HHHHHHHHHHhhhhchhhhhhhhhh
Q psy11010         99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYG---VLFLARSLQGIGSSCSSVSGMGMLA  175 (256)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~g~~~~~~~~~~~  175 (256)
                      ..................+.+.|++|||.....+.++..++.++.++.....   ...+...+...+.+..+.....+.+
T Consensus       353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
T KOG0255|consen  353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA  432 (521)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444446666666678999999999999999999999999888765332   2444455555666666777789999


Q ss_pred             hcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        176 ERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       176 ~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      |++|+ ..|+.+.+.......+|.+++|.+...... ......+.+.+....+...+..++.|+....
T Consensus       433 el~pt-~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  433 ELIPT-VVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             hhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            99998 999999999999999999999998866554 2222232334555555555665666665443

>KOG2816|consensus

Probab=98.39  E-value=5.5e-06  Score=71.11  Aligned_cols=126  Identities=17%  Similarity=0.217  Sum_probs=112.1

Q ss_pred             HHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHH-HhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhh
Q psy11010         84 RENRHKYLMGETKAVGVMFGSKAFVQLLANPLVG-ILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIG  162 (256)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  162 (256)
                      ..++...++++..+.+...+...+...+++.+.. .+...+|-|+++..|+..-.+..++.+++++.|+++....+.++ 
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~-  343 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL-  343 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh-
Confidence            4456777999999999999999999999998876 88888999999999999999999999999999998888777666 


Q ss_pred             hhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy11010        163 SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ  211 (256)
Q Consensus       163 ~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~  211 (256)
                      .+...+...++++.+..+ +++|+++++......+..+++|.+-+.+..
T Consensus       344 ~~~~~pa~~s~~s~~v~~-~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  344 AGIVFPAIRAFASILVSP-EEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hcchhHHHHhHHHhhccc-ccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            567888889999999998 999999999999999999999999887754

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.36  E-value=4.2e-06  Score=70.38  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhc---------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc--chhhHHHHHHHHHH
Q psy11010        127 LPMFTGFVIMFLSTLIFAFGR---------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD--RERGNAMGIALGGL  195 (256)
Q Consensus       127 ~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~r~~~~g~~~~~~  195 (256)
                      +.+.++.++..+|.+++.++.         +...++++..+.++|.|+.-|...++.+|.++++  ++|.+++.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888754421         2356888999999999999999999999999862  36778889999999


Q ss_pred             HHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhhe
Q psy11010        196 ALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       196 ~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      ++|..+++.+.+++-++.||.+.|.+.++..+++.+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999888876665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.29  E-value=2.7e-06  Score=70.64  Aligned_cols=159  Identities=19%  Similarity=0.081  Sum_probs=111.5

Q ss_pred             hhHHHHHhhhcC-------cchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH-HHHHHHHHHHHHHHhhch--HH-
Q psy11010         82 VARENRHKYLMG-------ETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF-TGFVIMFLSTLIFAFGRT--YG-  150 (256)
Q Consensus        82 ~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~-~~~~~~~~~~~~~~~~~~--~~-  150 (256)
                      +.|.|.++..+.       +.+..+...++..+..++.+|+.|.++|+.|+||..+ ...++..+..+.+.++++  ++ 
T Consensus        37 ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~  116 (438)
T COG2270          37 IFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLL  116 (438)
T ss_pred             hhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHH
Confidence            345555554333       2356788889999999999999999999999666554 445555666666666554  43 


Q ss_pred             HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH--hhh-h---------------hc
Q psy11010        151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG--GIM-Y---------------QF  212 (256)
Q Consensus       151 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~--~~l-~---------------~~  212 (256)
                      ..++...+..++.........+++.+..++ ++-++..++-.....+|+.+.-.+.  +.+ .               +.
T Consensus       117 ~~l~~~il~~i~~~~s~Vfyds~L~~~~~k-~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~  195 (438)
T COG2270         117 LLLLFLILASIGFEFSNVFYDSMLPRLTTK-DNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADG  195 (438)
T ss_pred             HHHHHHHHHHHhcchhheehhhHhhhhcCc-cccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccc
Confidence            445556778888888888899999999997 7888887775555556655443332  111 1               23


Q ss_pred             cCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        213 VGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ..-|.++.+.++..++..+..++..++.+
T Consensus       196 ~~~ri~~~l~A~W~li~~iPm~~~v~~~~  224 (438)
T COG2270         196 EDVRITGLLAALWWLLFALPMILNVHDAE  224 (438)
T ss_pred             ccchhHHHHHHHHHHHHHhHHHhcccccc
Confidence            34788899999999998888887776654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.23  E-value=0.00023  Score=61.29  Aligned_cols=145  Identities=9%  Similarity=-0.046  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcC-----cchhHHHHHHHHHHHHHHh-hhHHHHhhhhcCchhHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMG-----ETKAVGVMFGSKAFVQLLA-NPLVGILTHRVGYSLPMFTGF  133 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~G~r~~l~~~~  133 (256)
                      ..+....+..++..+.++..-++     .+.+..     +.+.+.++-+...+...+. .++.+++++|++|++++-...
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~l-----KD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRDT-----KDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-----hhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            34444555555555555544444     455544     3357888888777766665 888999999999999987776


Q ss_pred             HHHHHHHHHHHhh----c---------------------------hHHHHHHHHHHHHhhhhchhh-hhhhhhhhcccCc
Q psy11010        134 VIMFLSTLIFAFG----R---------------------------TYGVLFLARSLQGIGSSCSSV-SGMGMLAERYPDD  181 (256)
Q Consensus       134 ~~~~~~~~~~~~~----~---------------------------~~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~  181 (256)
                      ..+....+++++.    +                           +.|...+..+...+-...... ....++.|.++. 
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~-  160 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI-  160 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-
Confidence            6666666555543    1                           122222333444554455555 778999999998 


Q ss_pred             chhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010        182 RERGNAMGIALGGLALGVLIGPPFGGIMY  210 (256)
Q Consensus       182 ~~r~~~~g~~~~~~~lg~~~g~~i~~~l~  210 (256)
                      ++-.|..++++.+.++|.++++.+..++.
T Consensus       161 ~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       161 DEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK03612 spermidine synthase; Provisional

Probab=98.19  E-value=0.00025  Score=62.14  Aligned_cols=157  Identities=15%  Similarity=0.104  Sum_probs=90.9

Q ss_pred             HHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH---H-HHH---
Q psy11010         71 LDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS---T-LIF---  143 (256)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~---~-~~~---  143 (256)
                      +.++....+..+..-.+...+|.+..+.+.+.+++..+..+|+.+.+++.++.-++.. .+-..+..++   . ++.   
T Consensus        25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~  103 (521)
T PRK03612         25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAF  103 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444555678888899999999999999999998888744322222 1111111111   1 111   


Q ss_pred             HhhchH-HHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh-hccCchHHHHH
Q psy11010        144 AFGRTY-GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY-QFVGKTAPFLI  221 (256)
Q Consensus       144 ~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~-~~~g~~~~~~~  221 (256)
                      .+.... ..++...++.++..|...|....+..+...  ++-+...|-.+....+|+++|.++.+++. ...|-....++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~--~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~  181 (521)
T PRK03612        104 AFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD--QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAAL  181 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            111111 112333455677777777776665554332  34567788888888999999999988654 46675544444


Q ss_pred             HHHHHHHHH
Q psy11010        222 LSALALGDG  230 (256)
Q Consensus       222 ~~~~~~~~~  230 (256)
                      .+.+.+++.
T Consensus       182 ~a~l~~~~a  190 (521)
T PRK03612        182 TGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHH
Confidence            444444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.06  E-value=0.00031  Score=59.89  Aligned_cols=141  Identities=19%  Similarity=0.227  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhhcCch-------hHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHHH
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILTHRVGYS-------LPMFTGFVIMFLSTLIFAFG----------RTYGVLFLARSLQ  159 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~  159 (256)
                      ..++..++..+..++.+|+..++-.+.+++       .=+-++.++.+.+.++....          .+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            457888888888899999988888875443       11355666666666655432          2678888999999


Q ss_pred             HhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhh------hhhccCchHHHHHHHHHHHHHHhHh
Q psy11010        160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGI------MYQFVGKTAPFLILSALALGDGCKC  233 (256)
Q Consensus       160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~------l~~~~g~~~~~~~~~~~~~~~~~~~  233 (256)
                      ++|.=...|...+++....|+ +-.+..++++-.....|..++..+.+.      ..+.......|+..++..++..+..
T Consensus       405 s~gEL~iSpvGLs~~t~laP~-~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPP-ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999998 999999999998888888888777763      2333445677888887777766665


Q ss_pred             hheee
Q psy11010        234 NYTIV  238 (256)
Q Consensus       234 ~~~~~  238 (256)
                      +...|
T Consensus       484 ~~~~~  488 (498)
T COG3104         484 LLLSP  488 (498)
T ss_pred             HHhhH
Confidence            54443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.02  E-value=9.6e-05  Score=61.97  Aligned_cols=138  Identities=13%  Similarity=0.143  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHH--HHHHHHHH-
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGF--VIMFLSTL-  141 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~--~~~~~~~~-  141 (256)
                      +.+.++.+......+.+.+...  .+......++-+...++.+|..+++--.-.+  |+  |++.+...  .+..+..+ 
T Consensus       252 L~lVY~aEY~InqGv~~tl~fp--~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l  325 (402)
T PF02487_consen  252 LFLVYFAEYFINQGVAPTLLFP--NSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLL  325 (402)
T ss_pred             HHHHHHHHHHHHhchHHHhcCC--ccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHH
Confidence            3344444444444443332211  2233345677788888888877765543222  33  33333322  22222222 


Q ss_pred             --HHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhh
Q psy11010        142 --IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM  209 (256)
Q Consensus       142 --~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l  209 (256)
                        +.-+.++.+.+++..+..|+..|..+......+.|..++ ++|..++|....+-++|..++.+++-++
T Consensus       326 ~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~-~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  326 QSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP-EDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              223457888888889999999999999999999999998 9999999999999999998887776554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.01  E-value=0.0001  Score=66.26  Aligned_cols=152  Identities=12%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHH-HHHHhhhHHHHhhhhcC--chhHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAF-VQLLANPLVGILTHRVG--YSLPMFTGFVIM  136 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~l~~~~~~~  136 (256)
                      +.++...+..++.......+...+|.++++++|.++.+++++.+...+ +.+++.++.|+++||++  .|+.+..+.++.
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLS  409 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHH
Confidence            345555566666666666677788999988999999999999988776 67889999999999998  456666666655


Q ss_pred             HHHHHHHHh---------------------------h----------c--------------------------------
Q psy11010        137 FLSTLIFAF---------------------------G----------R--------------------------------  147 (256)
Q Consensus       137 ~~~~~~~~~---------------------------~----------~--------------------------------  147 (256)
                      .++.++...                           .          .                                
T Consensus       410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~  489 (633)
T TIGR00805       410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM  489 (633)
T ss_pred             HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence            555433110                           0          0                                


Q ss_pred             --------------------------h-HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHH-HHHH
Q psy11010        148 --------------------------T-YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGL-ALGV  199 (256)
Q Consensus       148 --------------------------~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~-~lg~  199 (256)
                                                + +..+++..++..+..+.........+-+.+|+ ++|..++|+..... -+|.
T Consensus       490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~-~~rs~alg~~~~~~rllg~  568 (633)
T TIGR00805       490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNP-EEKSLAIGLQWLCMRVFAT  568 (633)
T ss_pred             eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCc-ccchHHhhHHHHHHHHhcC
Confidence                                      0 11222333333333334444445566678887 99999999965544 5688


Q ss_pred             hhhhhHHhhhhhc
Q psy11010        200 LIGPPFGGIMYQF  212 (256)
Q Consensus       200 ~~g~~i~~~l~~~  212 (256)
                      +-+|++.|++.|.
T Consensus       569 iP~pi~fG~~iD~  581 (633)
T TIGR00805       569 IPAPILFGLLIDV  581 (633)
T ss_pred             CChhHHHhhhhhc
Confidence            9999999999875

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2563|consensus

Probab=97.89  E-value=2.2e-05  Score=65.79  Aligned_cols=179  Identities=15%  Similarity=0.078  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCc-hhHHHHHHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGY-SLPMFTGFVIMFLS  139 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~l~~~~~~~~~~  139 (256)
                      .+.++.+++.+....++.....+...+ ..-|.+....|++.....++.++++.+.|.+.||... |+.+.+......++
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            344444444333333333333333222 3345666789999999999999999999999999874 45555555554444


Q ss_pred             HHHH-Hh---hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-
Q psy11010        140 TLIF-AF---GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-  214 (256)
Q Consensus       140 ~~~~-~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-  214 (256)
                      .... ..   ....+.++..-.+.|.+.....|...-+..|..-| ..-+.-.|+.+....+-+++-..+.+...+..+ 
T Consensus       346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP-v~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~  424 (480)
T KOG2563|consen  346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP-VAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGP  424 (480)
T ss_pred             HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc-cCCcccceeEEeehhHHHHHHHHHHHHHhhccCC
Confidence            2221 11   12344566677788888888999888888887555 566667777766666655666666677766555 


Q ss_pred             ---chHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        215 ---KTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       215 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                         +...-+.....+++..++..++.++.+
T Consensus       425 ~~~~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  425 PGNTFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             CCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence               443444455555555555566555433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.82  E-value=0.00019  Score=61.61  Aligned_cols=148  Identities=13%  Similarity=0.038  Sum_probs=104.8

Q ss_pred             hhhc---CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHH-hh---------chHHHHHHH
Q psy11010         89 KYLM---GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFA-FG---------RTYGVLFLA  155 (256)
Q Consensus        89 ~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~-~~---------~~~~~~~~~  155 (256)
                      +..+   .++...+.+..+..++..++..+..++.-+..-|+++.+..++.++..+.-. +.         ++.+-.+.-
T Consensus       245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd  324 (433)
T PF03092_consen  245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGD  324 (433)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEh
Confidence            4455   8888899999888889999998888877777888888887776666544321 11         122222233


Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC--------chHHHHHHHHHHH
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG--------KTAPFLILSALAL  227 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g--------~~~~~~~~~~~~~  227 (256)
                      -++..+.....+-+...+++|.+|+ ..-|+..++.....++|..++..++..+.+..+        ..+..++..+..+
T Consensus       325 ~~l~~~~~~i~~mP~lvl~a~lcP~-G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~l  403 (433)
T PF03092_consen  325 TILEEVIGMIAFMPSLVLAARLCPK-GSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQL  403 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence            4566666667777778999999998 999999999999999999999999988887654        2344455555554


Q ss_pred             HHHhHhhhee
Q psy11010        228 GDGCKCNYTI  237 (256)
Q Consensus       228 ~~~~~~~~~~  237 (256)
                      +...+..+..
T Consensus       404 l~l~ll~lLp  413 (433)
T PF03092_consen  404 LPLPLLFLLP  413 (433)
T ss_pred             HHHHHHHHcC
Confidence            4444433433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325|consensus

Probab=97.82  E-value=6.9e-05  Score=64.16  Aligned_cols=182  Identities=15%  Similarity=0.198  Sum_probs=111.5

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHH----HHHHHHHhhhHHHHhh-hhcCchhHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGS----KAFVQLLANPLVGILT-HRVGYSLPM  129 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~g~l~-dr~G~r~~l  129 (256)
                      .+..+...+.+.+..+...+....+....+......++.+.++.-+..+.    ..+......+..+... -++.+|..+
T Consensus       257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~  336 (488)
T KOG2325|consen  257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRII  336 (488)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceee
Confidence            34455555555555555555555555555555556677766555444443    3333333333333332 233445555


Q ss_pred             HHHHHHHHHHHHHHHh----h---------------------------chHHHHHHH-HHHHHhhhhchhhhhhhhhhhc
Q psy11010        130 FTGFVIMFLSTLIFAF----G---------------------------RTYGVLFLA-RSLQGIGSSCSSVSGMGMLAER  177 (256)
Q Consensus       130 ~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~~~-~~l~G~~~g~~~~~~~~~~~~~  177 (256)
                      ..++++......+..+    .                           .+.+.++.+ -++.|++.=.......++-+|.
T Consensus       337 ~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySki  416 (488)
T KOG2325|consen  337 LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKI  416 (488)
T ss_pred             eehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHH
Confidence            6554444433332221    0                           012223333 2346666666677778999999


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhhee
Q psy11010        178 YPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       178 ~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      ..+ ++++...++++....++..++|.+...+....|.++...+.++..++...+.....
T Consensus       417 Lgp-~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~  475 (488)
T KOG2325|consen  417 LGP-RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFL  475 (488)
T ss_pred             hCC-ccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            998 99999999999999999999999999999999999888877777666555444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.71  E-value=7.8e-06  Score=71.78  Aligned_cols=156  Identities=13%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHH-HHHHhhhHHHHhhhhcC--chhHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAF-VQLLANPLVGILTHRVG--YSLPMFTG  132 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~l~~~  132 (256)
                      ..+...+....++.....+....+..+.|.|++.+++.++++++++..+..+ +.+++.+++|++..|+.  .|+.+-..
T Consensus       301 Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~  380 (539)
T PF03137_consen  301 LLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC  380 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence            3445566777777777788888888899999999999999999999887777 67788888999999885  44444443


Q ss_pred             HHHHHHHHHH---HHh--------h---c----------------------------------------hHHHHHHHHHH
Q psy11010        133 FVIMFLSTLI---FAF--------G---R----------------------------------------TYGVLFLARSL  158 (256)
Q Consensus       133 ~~~~~~~~~~---~~~--------~---~----------------------------------------~~~~~~~~~~l  158 (256)
                      .++..+..+.   ..+        +   .                                        ++..+++..++
T Consensus       381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~  460 (539)
T PF03137_consen  381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI  460 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence            3333333322   100        0   0                                        01223333333


Q ss_pred             HHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHH-HHHHHhhhhhHHhhhhhc
Q psy11010        159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGG-LALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       159 ~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~-~~lg~~~g~~i~~~l~~~  212 (256)
                      .-+..+.........+-+.+|+ ++|..++|+.... .-+|.+-||++.|.+.|.
T Consensus       461 ~~~~~~~~~~p~~~i~LR~V~~-~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  461 LSFFTFMSQVPSTLITLRCVPP-EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHhcccchheeeeccCCh-hhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            3344444455555666688887 9999999996554 556888899999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.67  E-value=0.002  Score=54.24  Aligned_cols=133  Identities=17%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcc
Q psy11010         99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERY  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  178 (256)
                      +.+.-+-.+-..+..+.+.++.+|+..+.-+....+++.++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            34555555666777777888999998776677777889999999999999998889999999999988887777644 55


Q ss_pred             cCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC--chHHHHHHHHHHHHHHhHhhheee
Q psy11010        179 PDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG--KTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       179 ~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      ++     ...+.+..+.+.++++|+..-..+.+ .|  .|..+.+..++.++..+..++.++
T Consensus       141 ~~-----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  141 GK-----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             Cc-----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            43     24677888888888888877766665 55  466777777766554444444444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.51  E-value=0.019  Score=49.08  Aligned_cols=127  Identities=16%  Similarity=0.130  Sum_probs=90.2

Q ss_pred             chhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHh------hc----h
Q psy11010         79 VEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF------GR----T  148 (256)
Q Consensus        79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~------~~----~  148 (256)
                      ..+.+..|+..+ |+++..+|..-+...+....+.....++.+|+|..+.=+++...-.+...++..      .+    +
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s  355 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS  355 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence            345566676444 999999999999999999999999999999999877777766544433332221      11    2


Q ss_pred             HHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHh
Q psy11010        149 YGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGG  207 (256)
Q Consensus       149 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~  207 (256)
                      ...++.+-.+.=+|.=.......-++.|..|+ ++||...|.-+...++--.+-..++-
T Consensus       356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-SERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444455445566667889999997 99999999988888776666544433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4332|consensus

Probab=97.38  E-value=0.00023  Score=56.05  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=95.0

Q ss_pred             HhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchh
Q psy11010         88 HKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSS  167 (256)
Q Consensus        88 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  167 (256)
                      -+.+|....++|.+.....-..++...+.|.+.||-|||+.-+.-++...++++ .-.++++-.++++|.+.|+..+..+
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF  142 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF  142 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence            466788888999998888888889999999999999999986665555444432 2346778889999999999999988


Q ss_pred             hhhhhh-hhhcccCcchhhHHHHHHHH----HHHHHHhhhhhH----Hhhhhhcc--CchHHHHHHHHHHHHHHhHhh
Q psy11010        168 VSGMGM-LAERYPDDRERGNAMGIALG----GLALGVLIGPPF----GGIMYQFV--GKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       168 ~~~~~~-~~~~~~~~~~r~~~~g~~~~----~~~lg~~~g~~i----~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~  234 (256)
                      .+.-++ ++|..   ++|+.-.-+...    +..+|.-+-.++    +..+.+..  |.-.+|-..+++..++..+++
T Consensus       143 SaFEsWliaEHn---ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  143 SAFESWLIAEHN---EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             HHHHHHHHHHhh---hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            887764 45554   344433322211    222333333333    33444543  566777776666666555544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.19  E-value=0.068  Score=45.82  Aligned_cols=173  Identities=14%  Similarity=0.068  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTL  141 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~  141 (256)
                      ...++...++.....-+.....+.++.+-+.-+---.+...-.-.+..+++++..|.+.||..|.+++-.+.++--++..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            34455566666666666655666666554443333344444455566778888999999999999887665443322222


Q ss_pred             HHH------hh--c----hHHHH---HHHHHHHHhhhhchhhh-hhhhhhhc----c--cCcchhhHHHHHHHHHHHHHH
Q psy11010        142 IFA------FG--R----TYGVL---FLARSLQGIGSSCSSVS-GMGMLAER----Y--PDDRERGNAMGIALGGLALGV  199 (256)
Q Consensus       142 ~~~------~~--~----~~~~~---~~~~~l~G~~~g~~~~~-~~~~~~~~----~--~~~~~r~~~~g~~~~~~~lg~  199 (256)
                      +.+      +.  .    +.+..   ++...+.|.-....... ..+.=-||    .  ++ +.+.+.++...-.--+..
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~-~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDP-GALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCCh-hhHHHHHHHHHHHHHHHH
Confidence            111      11  1    01111   22222222211111111 11111123    2  22 455666666666667799


Q ss_pred             hhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhh
Q psy11010        200 LIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       200 ~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      +++|++.|.+.+..+......+.++..+++..+=++
T Consensus       163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~  198 (432)
T PF06963_consen  163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF  198 (432)
T ss_pred             HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999889888888888888887765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762|consensus

Probab=97.19  E-value=0.00031  Score=60.40  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=59.7

Q ss_pred             HHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHH-HHHHHHHHHHHHhh
Q psy11010         69 LVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTG-FVIMFLSTLIFAFG  146 (256)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~-~~~~~~~~~~~~~~  146 (256)
                      .++.......+.|+++.| -+++|+++.+.|.+++.--+..+++.|++|+++||+-+|+.++++ ++......++..+.
T Consensus        20 ~~~~~~~~g~l~pll~vy-~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVY-FKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             eeeeeecccccchHHHHH-HHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            344455666777888887 478999999999999999999999999999999999866555554 55555555555553

>KOG3098|consensus

Probab=97.10  E-value=0.0087  Score=51.34  Aligned_cols=105  Identities=14%  Similarity=0.064  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCc
Q psy11010        102 FGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD  181 (256)
Q Consensus       102 ~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~  181 (256)
                      .++.+....+++++.+.+.|+.|.|+.++++........+.+-+-+ -+.++++..+.|+|.+..+..-..+++|..++ 
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~-  133 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTR-  133 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCCh-
Confidence            6777778888999999999999999999999998888777666644 56678899999999999999999999999998 


Q ss_pred             chhhHHHHHHHHHHHHHHhhhhhHHhh
Q psy11010        182 RERGNAMGIALGGLALGVLIGPPFGGI  208 (256)
Q Consensus       182 ~~r~~~~g~~~~~~~lg~~~g~~i~~~  208 (256)
                      +.+.+..++.=.....+.++|..+...
T Consensus       134 ~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  134 ETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            899998888766666666666555443

>KOG3098|consensus

Probab=97.05  E-value=0.057  Score=46.50  Aligned_cols=142  Identities=13%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhHhhhchhhhHHHHHhh--hcCcc-hhHHHHHHHHHHHHHHhhhHHHHhhh---hcCchhHHHHHHHH
Q psy11010         62 LVIVAIALVLDNMLLTTVEDVARENRHKY--LMGET-KAVGVMFGSKAFVQLLANPLVGILTH---RVGYSLPMFTGFVI  135 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d---r~G~r~~l~~~~~~  135 (256)
                      ...+....+..+........+.|.-+.-.  .+.+. ...+.......++..++..+.+.+++   ++|+++.+.++.++
T Consensus       242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~  321 (461)
T KOG3098|consen  242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIII  321 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHH
Confidence            34444444444455555555544443222  22222 23344444555566666666777765   57899999999888


Q ss_pred             HHHHHHHHHhh------------------chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH
Q psy11010        136 MFLSTLIFAFG------------------RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL  197 (256)
Q Consensus       136 ~~~~~~~~~~~------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l  197 (256)
                      ..++.++.-..                  ++....++.-++.|++-+......+.++.+.+|  ++|..+.+++..-..+
T Consensus       322 ~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~--~~~~~~fsi~kfyq~~  399 (461)
T KOG3098|consen  322 HLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP--DDRAQAFSLFKFYQSV  399 (461)
T ss_pred             HHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence            88887766431                  235567778899999999999999999999995  6888888887776666


Q ss_pred             HHhhhhhH
Q psy11010        198 GVLIGPPF  205 (256)
Q Consensus       198 g~~~g~~i  205 (256)
                      +..++-..
T Consensus       400 ~s~v~~f~  407 (461)
T KOG3098|consen  400 ASCVAFFF  407 (461)
T ss_pred             HHHHHhhh
Confidence            66554333

>KOG3574|consensus

Probab=96.99  E-value=0.026  Score=47.06  Aligned_cols=148  Identities=11%  Similarity=0.016  Sum_probs=92.0

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhh-----hcCchhHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTH-----RVGYSLPMF  130 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~G~r~~l~  130 (256)
                      +.....+..+.+.+.+++....... ..|.++ +.-|.|-++.+....++. - .-..+.+..+.|     |+||||..+
T Consensus        27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL-~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLL-QAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHh-cCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhcccccee
Confidence            4445567777777888888777765 556665 455667666554433221 1 123566788888     999988765


Q ss_pred             HH-HHHHHHHHHHHHh-----------hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHH
Q psy11010        131 TG-FVIMFLSTLIFAF-----------GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALG  198 (256)
Q Consensus       131 ~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg  198 (256)
                      +- ..+....+.+++.           .++........++.-+..+.--.+.-.+.-.+..+ ++-|.+......+...|
T Consensus       103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~-e~lgyaST~q~Vg~~~G  181 (510)
T KOG3574|consen  103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR-ENLGYASTCQSVGQTAG  181 (510)
T ss_pred             eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH-hhcCchhHHHHHHHhhh
Confidence            42 2333333333332           12233333344566666666666677788888887 89999988888888888


Q ss_pred             HhhhhhHHhh
Q psy11010        199 VLIGPPFGGI  208 (256)
Q Consensus       199 ~~~g~~i~~~  208 (256)
                      .+++..+.-.
T Consensus       182 yfL~~~ifLa  191 (510)
T KOG3574|consen  182 YFLGNVVFLA  191 (510)
T ss_pred             HHhhcceeeE
Confidence            8877655433

>KOG1330|consensus

Probab=96.94  E-value=0.0043  Score=52.66  Aligned_cols=134  Identities=15%  Similarity=0.057  Sum_probs=78.8

Q ss_pred             hhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcC----chhHHHHHHHHH------HHHHHHH-Hh-hchH
Q psy11010         82 VARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVG----YSLPMFTGFVIM------FLSTLIF-AF-GRTY  149 (256)
Q Consensus        82 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G----~r~~l~~~~~~~------~~~~~~~-~~-~~~~  149 (256)
                      ...++..+-.|.+..+..++..+...+..+|..++|.++||+-    +-.......+..      .+.++.+ .. ..+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s  348 (493)
T KOG1330|consen  269 AFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSS  348 (493)
T ss_pred             hHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHH
Confidence            3333333444556666677788888899999999999999842    212222222111      1111211 11 2222


Q ss_pred             HHHHHHHHHHHhhhhch-hhhhhhhhhhcccCcchhhHHHHHHHH-HHHHHHhhhhhHHhhhhhcc-Cch
Q psy11010        150 GVLFLARSLQGIGSSCS-SVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQFV-GKT  216 (256)
Q Consensus       150 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~r~~~~g~~~~-~~~lg~~~g~~i~~~l~~~~-g~~  216 (256)
                      ..+.+..++.|+..... ......+..|..|+ ++|..+.++-.. ...+|.+-+|.+.|.+.++. ||+
T Consensus       349 ~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p-~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  349 MIFGLILFLVGETISWFNWATNNPIFLEVVPP-SRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHHHHHHHHhcccccccceeeEecCc-ccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            33334445555544333 33345577788898 999999999654 44557777776889998864 555

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.87  E-value=0.052  Score=46.77  Aligned_cols=109  Identities=13%  Similarity=0.063  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhhcCch--hHHHHH--HHHHHHHHHHHHhh---------chHHHHHHHHHHHHhhh
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILTHRVGYS--LPMFTG--FVIMFLSTLIFAFG---------RTYGVLFLARSLQGIGS  163 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~l~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~  163 (256)
                      ..-....+++++-.+|..+..+. ..-++|  .+++..  =+++....+++...         ++-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            34456677788888877755432 111222  333322  22333333444322         35566677799999999


Q ss_pred             hchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHh
Q psy11010        164 SCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGG  207 (256)
Q Consensus       164 g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~  207 (256)
                      |........+..+..++ ++|..+-.+...+..+|-.+|..++-
T Consensus       387 Gy~~s~~m~~~p~~v~~-~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDP-HEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             hHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999997 99999988888888888888877643

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.35  E-value=0.6  Score=40.89  Aligned_cols=152  Identities=13%  Similarity=0.040  Sum_probs=91.5

Q ss_pred             cchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHH-HHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         57 SRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAF-VQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      ..+..+..+.+..++..+.++..-..=...+....  .++.+..+=....+ +..+...+..+++|++++.+++-.....
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34455666666666655555544333111111111  33445555443333 4455667789999999999988666555


Q ss_pred             HHHHHHHHHhh---------ch----------------------HHHHHHHHHHHHhhhhchhh-hhhhhhhhcccCcch
Q psy11010        136 MFLSTLIFAFG---------RT----------------------YGVLFLARSLQGIGSSCSSV-SGMGMLAERYPDDRE  183 (256)
Q Consensus       136 ~~~~~~~~~~~---------~~----------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~~  183 (256)
                      +.....++++.         ++                      .|.+.+.-++.-+-.....+ ....++.|.++. ++
T Consensus        99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~-~e  177 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV-EE  177 (491)
T ss_pred             HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HH
Confidence            55554444431         11                      12222222222332233333 457889999998 99


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy11010        184 RGNAMGIALGGLALGVLIGPPFGGIMYQ  211 (256)
Q Consensus       184 r~~~~g~~~~~~~lg~~~g~~i~~~l~~  211 (256)
                      -.|..++++.+.++|.+++..+..++.+
T Consensus       178 AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  178 AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.18  E-value=0.12  Score=44.85  Aligned_cols=99  Identities=11%  Similarity=-0.040  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhhcCch--hHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhh
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILTHRVGYS--LPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML  174 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  174 (256)
                      .-|.+-++..+..++..+..|++-.++.+-  ..+.+..++.+...++++..+|.+..+++.++.+.......+.+..-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888889999999997777542  334444555555667778889999999999999999999999988888


Q ss_pred             hhcccCcchhhHHHHHHHHHHH
Q psy11010        175 AERYPDDRERGNAMGIALGGLA  196 (256)
Q Consensus       175 ~~~~~~~~~r~~~~g~~~~~~~  196 (256)
                      +..... +.-|..+|++++...
T Consensus       379 A~~L~~-~~~aLvFGiNtfvAl  399 (511)
T TIGR00806       379 ASSLSK-ELCALVFGINTFVAT  399 (511)
T ss_pred             HHHhcc-cceEEEEecHHHHHH
Confidence            888875 666888888766443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.97  E-value=0.18  Score=42.81  Aligned_cols=103  Identities=11%  Similarity=-0.011  Sum_probs=77.6

Q ss_pred             cCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHH--HHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhh
Q psy11010         92 MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTG--FVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVS  169 (256)
Q Consensus        92 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  169 (256)
                      +.....-|.+-++..+..+++....|++..++.+..-+..+  .++.+...++++..++.+..+++.++.+.......+.
T Consensus       281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445678899999999999999999997777765444433  4455555667788899999999999888888888888


Q ss_pred             hhhhhhhcccCcchhhHHHHHHHHHH
Q psy11010        170 GMGMLAERYPDDRERGNAMGIALGGL  195 (256)
Q Consensus       170 ~~~~~~~~~~~~~~r~~~~g~~~~~~  195 (256)
                      +..-++..... +.-+..+|+..+..
T Consensus       361 A~~qIA~~l~~-e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  361 ASFQIAKNLSE-ERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHHHhccc-cceeeeeeeHHHHH
Confidence            77777777765 67777777765543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3880|consensus

Probab=95.89  E-value=0.025  Score=45.67  Aligned_cols=173  Identities=13%  Similarity=0.141  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcC--------------cchhHHHHHHHHHHHHHHhhhHHHHhhhhcCch
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMG--------------ETKAVGVMFGSKAFVQLLANPLVGILTHRVGYS  126 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r  126 (256)
                      .....++....+++.+..+.+.....+.++.+.              .....|.+.-.-.+-..+..+.+..+.||+---
T Consensus        13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~   92 (409)
T KOG3880|consen   13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFG   92 (409)
T ss_pred             cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence            344555556667777777666655555554430              011134555555555566666677788887655


Q ss_pred             hHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH
Q psy11010        127 LPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG  206 (256)
Q Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~  206 (256)
                      .-+....++.+.+.++.+++++.++-+.+-.+..++.|.......++.+.+ ++     ...+.+..+.+..+.+|..--
T Consensus        93 ~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y-~~-----~~i~~WSSGTGgAGliGa~SY  166 (409)
T KOG3880|consen   93 FRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY-PS-----IVIAGWSSGTGGAGLIGASSY  166 (409)
T ss_pred             hHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-CC-----ceeccccCCCCcchhhhhhHH
Confidence            555666678888888999999999888888888888887766654444433 32     123334444444455555444


Q ss_pred             hhhhhc--cCchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        207 GIMYQF--VGKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       207 ~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      ..+.+.  ...+.+.+++..+.++-+...++.+++
T Consensus       167 a~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  167 AFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             HHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            445442  356777777777766655555555543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.75  E-value=1.2  Score=38.64  Aligned_cols=151  Identities=8%  Similarity=-0.037  Sum_probs=99.1

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhc---CcchhHHHHHHHHHH-HHHHhhhHHHHhhhhcCchhHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLM---GETKAVGVMFGSKAF-VQLLANPLVGILTHRVGYSLPMFT  131 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~l~~  131 (256)
                      +..+..+..+.+..++..+.++..-++     .+.+.   .++..+.++=+..-+ +..+..++..++.+++.+.+++-.
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~l-----KDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRSL-----KDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            334555555555555555555443333     34433   345667777777777 677888899999999999999877


Q ss_pred             HHHHHHHHHHHHHhh---------ch-----------------------HHHHHHHHHHHHhhhhchhh-hhhhhhhhcc
Q psy11010        132 GFVIMFLSTLIFAFG---------RT-----------------------YGVLFLARSLQGIGSSCSSV-SGMGMLAERY  178 (256)
Q Consensus       132 ~~~~~~~~~~~~~~~---------~~-----------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~  178 (256)
                      -+..+....+++++.         ++                       .|...+...+.-+=...... ....+..|.+
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            776666666666541         11                       12222222222222223333 4567888999


Q ss_pred             cCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        179 PDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       179 ~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      .. ++-.|..++++...+++..++..+..++.++
T Consensus       178 t~-~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         178 TI-EEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            87 8999999999999999999998888888764

>KOG0637|consensus

Probab=95.72  E-value=0.045  Score=46.63  Aligned_cols=135  Identities=21%  Similarity=0.120  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcc
Q psy11010         99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERY  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  178 (256)
                      .|=..++.+...+.+....++.+|+|-|+++..+...+.++..+.+...+.+....-+...|+-.+.....-+..++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            34456777778888999999999999777777776667777767776666666666666666544444333333333211


Q ss_pred             ---------------------c-CcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHHHHHHHHHHHhHh
Q psy11010        179 ---------------------P-DDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLILSALALGDGCKC  233 (256)
Q Consensus       179 ---------------------~-~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~  233 (256)
                                           . .+.-+|...|+.++...+..++.....|.+.+..| -+.+-+..+..++....+.
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i~  492 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGIV  492 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHHH
Confidence                                 1 11334666777888888888888888887777665 3444444444444444433

>KOG3626|consensus

Probab=95.42  E-value=0.034  Score=50.33  Aligned_cols=83  Identities=14%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHH-HHHhhhHHHHhhhhcC--chhHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFV-QLLANPLVGILTHRVG--YSLPMFTGFVI  135 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~G--~r~~l~~~~~~  135 (256)
                      ..++....++..+....+..+..++|.|++.++|.+.+.+..+.+...+. .+++..++|++..|+.  .|....+..++
T Consensus       391 N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~  470 (735)
T KOG3626|consen  391 NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC  470 (735)
T ss_pred             CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence            44566677777777788888888999999999999999999999777764 5577777999999874  45555444444


Q ss_pred             HHHHHH
Q psy11010        136 MFLSTL  141 (256)
Q Consensus       136 ~~~~~~  141 (256)
                      ..+..+
T Consensus       471 ~~l~l~  476 (735)
T KOG3626|consen  471 SVLSLL  476 (735)
T ss_pred             HHHHHH
Confidence            444433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.39  E-value=0.005  Score=50.49  Aligned_cols=106  Identities=14%  Similarity=0.076  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHH--HHHHHHHHHHHh----------hchHHHHHHHHHHHHhhhhch
Q psy11010        100 VMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGF--VIMFLSTLIFAF----------GRTYGVLFLARSLQGIGSSCS  166 (256)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~~g~~  166 (256)
                      ....+++++-.+|+...++..=+ ..+|+++..+.  +++....+++..          .++-+..++..++.|+..|..
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            35667888999988887764211 13444443321  222222233311          234456677788999999999


Q ss_pred             hhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH
Q psy11010        167 SVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG  206 (256)
Q Consensus       167 ~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~  206 (256)
                      ......+..+..++ ++|..+-.+......+|-.+|..++
T Consensus       266 ~tl~m~~~p~~v~~-~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSP-EERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH-----------------------------------
T ss_pred             hhceeeeCCCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997 8998888888888888877776654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479|consensus

Probab=95.22  E-value=0.28  Score=41.48  Aligned_cols=108  Identities=14%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             hHHHHHHH-HHHHHHHhhhHHHHhhhhcCchhHHHHHHH--HHHHHHHHHH------hhchHHHHHHHHHHHHhhhhchh
Q psy11010         97 AVGVMFGS-KAFVQLLANPLVGILTHRVGYSLPMFTGFV--IMFLSTLIFA------FGRTYGVLFLARSLQGIGSSCSS  167 (256)
Q Consensus        97 ~~~~~~~~-~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~l~G~~~g~~~  167 (256)
                      ..-.+..+ +++...+|.+...++.++- ||+..+..++  +..-...+|-      +-.+-++++....+.|+..|-..
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            34444555 7888888877777776653 4444433332  2222222222      23466778888999999999999


Q ss_pred             hhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHH
Q psy11010        168 VSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFG  206 (256)
Q Consensus       168 ~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~  206 (256)
                      .....+..+..++ +++..+-.+.......|-..|..++
T Consensus       362 sl~m~~aPk~v~~-~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  362 SLIMMYAPKQVKP-SEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hheehhcCCCCCh-HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999987 7887777777777777777665553

>KOG3097|consensus

Probab=94.99  E-value=0.76  Score=37.78  Aligned_cols=102  Identities=16%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             HHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccC-cchh
Q psy11010        106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPD-DRER  184 (256)
Q Consensus       106 ~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~r  184 (256)
                      .+..+..+.+.+.+..++|-|+.++++......... .-+-+.+..++..-.+.|++.+..+..--+++++.-.. .++|
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~  146 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR  146 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence            344455666667899999999998887665554322 22335677788888999999999888777777765432 0233


Q ss_pred             -------------hHHHHHHHHHHHHHHhhhhhHHhh
Q psy11010        185 -------------GNAMGIALGGLALGVLIGPPFGGI  208 (256)
Q Consensus       185 -------------~~~~g~~~~~~~lg~~~g~~i~~~  208 (256)
                                   |....++++..-+|..+...+...
T Consensus       147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~  183 (390)
T KOG3097|consen  147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTL  183 (390)
T ss_pred             hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         233444555555565555555443

>KOG4332|consensus

Probab=94.93  E-value=0.96  Score=36.33  Aligned_cols=134  Identities=16%  Similarity=0.045  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhcCch--hHHHHHHHHHHHHHHHHHh----hc---hHHHHHHHHHHHHhhhhchhh
Q psy11010         98 VGVMFGSKAFVQLLANPLVGILTHRVGYS--LPMFTGFVIMFLSTLIFAF----GR---TYGVLFLARSLQGIGSSCSSV  168 (256)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~l~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~G~~~g~~~~  168 (256)
                      -|.+.+.+++..++++-+..++..|-..|  ..+.+.+++.++...+...    ++   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58999999999999999998887765543  3444444444444333222    11   223335666777788899999


Q ss_pred             hhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhH
Q psy11010        169 SGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCK  232 (256)
Q Consensus       169 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  232 (256)
                      ...-+=++..|+ +.|...+.++..-..+-.-++-..-..-....+-|..|-+..+...++.+.
T Consensus       364 SimkmRsqyIPE-earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPE-EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCH-HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            998899999997 999988887765444322221111000011124566777666665554443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.54  E-value=0.57  Score=40.75  Aligned_cols=146  Identities=10%  Similarity=0.018  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHhHhhhchhhhHHHHHh-hhcCcchhHHHHHHH--HHHHHHHhhhHH-HHhhhhcCchhHHHHH-HHHHH
Q psy11010         63 VIVAIALVLDNMLLTTVEDVARENRHK-YLMGETKAVGVMFGS--KAFVQLLANPLV-GILTHRVGYSLPMFTG-FVIMF  137 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~--~~~~~~~~~~~~-g~l~dr~G~r~~l~~~-~~~~~  137 (256)
                      ..+.+.+++++...+......|..+++ .-+.+-++.+...-+  ..-.=.+-+|+. ...+.|+||||..++- ..+.+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g   82 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG   82 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence            345666777777776654445665544 135555555543211  111112222222 2335589999887543 23333


Q ss_pred             HHHHHHHhhc----------------------hHH--HHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHH
Q psy11010        138 LSTLIFAFGR----------------------TYG--VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG  193 (256)
Q Consensus       138 ~~~~~~~~~~----------------------~~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~  193 (256)
                      +..+..+..-                      +..  .+....++.=+..+.--.+.-.+.-....+ ++++.|......
T Consensus        83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~-~n~~~ASTcqtv  161 (544)
T PF13000_consen   83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSP-ENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcCh-hhcchHHHHHHh
Confidence            3333332211                      011  112222222222333333344555666776 899988888888


Q ss_pred             HHHHHHhhhhhHHhhh
Q psy11010        194 GLALGVLIGPPFGGIM  209 (256)
Q Consensus       194 ~~~lg~~~g~~i~~~l  209 (256)
                      +.+.|.+++..+.-.+
T Consensus       162 G~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhhhhHHHHHHHHHhh
Confidence            8888888776655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.37  E-value=3.3  Score=36.23  Aligned_cols=73  Identities=19%  Similarity=0.086  Sum_probs=57.1

Q ss_pred             HHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHH
Q psy11010        156 RSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALG  228 (256)
Q Consensus       156 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  228 (256)
                      -++.|+........--..+.+.+|.+++|...+|-++...++..++..++.+.+.+..||.....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3446666667777667788888887678999999999988888877777779999999999777666555554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3810|consensus

Probab=93.94  E-value=1  Score=37.39  Aligned_cols=135  Identities=14%  Similarity=0.018  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhhhcCch--hHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhh
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILTHRVGYS--LPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML  174 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  174 (256)
                      .-|..-.+..+..+++.+..|++.-++.|.  ..+.++.+.-+...+++...++.|..+++.++...-.....+.+..-+
T Consensus       272 yNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  272 YNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            346667777888888999999998777665  344455566666666777788899999998888888888888888888


Q ss_pred             hhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-----------chHHHHHHHHHHHHHHhHhhh
Q psy11010        175 AERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-----------KTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       175 ~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      ++.... +.-|..+|+..+..-   ++=.++.-.+.|..|           +..-|.+.+++.++.+.....
T Consensus       352 A~nL~~-e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  352 ARNLSS-ELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             HHhhhh-hhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            888876 777888888765432   333334444444222           334467777777776554433

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=93.64  E-value=3.7  Score=34.28  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=57.1

Q ss_pred             hcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH-------HHHHHh--hchHHHHHHHHHHHHh
Q psy11010         91 LMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS-------TLIFAF--GRTYGVLFLARSLQGI  161 (256)
Q Consensus        91 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~l~G~  161 (256)
                      .|-+--+.+.+.+.+...+.+++...-++.|.--.-+.+.+-.++..++       ++.+++  .++.+.+++..++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            5667778899999999999998888887777533322222222221111       112222  3466778888899999


Q ss_pred             hhhchhhhhhhhhhh
Q psy11010        162 GSSCSSVSGMGMLAE  176 (256)
Q Consensus       162 ~~g~~~~~~~~~~~~  176 (256)
                      -.|...|....+...
T Consensus       118 LVG~EiPL~mrml~~  132 (508)
T COG4262         118 LVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHhcchHHHHHHHHH
Confidence            999999988887776

>KOG1479|consensus

Probab=93.64  E-value=4  Score=34.70  Aligned_cols=30  Identities=13%  Similarity=0.058  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHhhhhchhhhhhhhhhhcc
Q psy11010        149 YGVLFLARSLQGIGSSCSSVSGMGMLAERY  178 (256)
Q Consensus       149 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  178 (256)
                      +...++.-.+.+++.+..........++.-
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P  146 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFP  146 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhcCC
Confidence            445556667788888887777666666554

>KOG2601|consensus

Probab=93.47  E-value=2.9  Score=35.22  Aligned_cols=164  Identities=15%  Similarity=0.015  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHH------H
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMF------L  138 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~------~  138 (256)
                      +.+++++.....-+.......++.+-.|.+-...+....+-.....+..++.|...|+..|+|++...+.+--      .
T Consensus        32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vag  111 (503)
T KOG2601|consen   32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAG  111 (503)
T ss_pred             hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHH
Confidence            4444444444444444444555555455444444444444555566778888999999999999876654322      2


Q ss_pred             HHHHHHhhc------hHHHHHHHHHHHHhhhhc--hhhhhhhhh--hhcc---cCcchhhHHH---HHHHHHHHHHHhhh
Q psy11010        139 STLIFAFGR------TYGVLFLARSLQGIGSSC--SSVSGMGML--AERY---PDDRERGNAM---GIALGGLALGVLIG  202 (256)
Q Consensus       139 ~~~~~~~~~------~~~~~~~~~~l~G~~~g~--~~~~~~~~~--~~~~---~~~~~r~~~~---g~~~~~~~lg~~~g  202 (256)
                      +.++..+.+      +.+.+..+.++.-.-.++  ......+++  -||.   ..++.+....   +.....-..-..+.
T Consensus       112 glvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~La  191 (503)
T KOG2601|consen  112 GLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLA  191 (503)
T ss_pred             HHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchh
Confidence            223333322      344444444443222221  111112211  1222   1114444443   33444444567889


Q ss_pred             hhHHhhhhhccCchHHHHHHHHHHHH
Q psy11010        203 PPFGGIMYQFVGKTAPFLILSALALG  228 (256)
Q Consensus       203 ~~i~~~l~~~~g~~~~~~~~~~~~~~  228 (256)
                      |.+.|.+....+.|..-.+.++..++
T Consensus       192 pv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  192 PVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhhhcccceeechhhhhhhhHHHHHH
Confidence            99999998887777665555555555

>KOG3810|consensus

Probab=92.74  E-value=0.34  Score=40.16  Aligned_cols=154  Identities=10%  Similarity=0.042  Sum_probs=100.4

Q ss_pred             hhhhHHHHH-hhhcCcchhHH-HHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q psy11010         80 EDVARENRH-KYLMGETKAVG-VMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARS  157 (256)
Q Consensus        80 ~~~~~~~~~-~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (256)
                      .|.+.+|+. .+.+++..+.. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.......++.+.++.+.+-+.-+
T Consensus        24 eP~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~  103 (433)
T KOG3810|consen   24 EPYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEF  103 (433)
T ss_pred             CCccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehh
Confidence            345444443 34455444332 1222222333344444445889888899988887777788888888899998888888


Q ss_pred             HHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc--CchHHHHHHHHHHHHHHhHhhh
Q psy11010        158 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV--GKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       158 l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      +.|...+. ..+.++++-+..++ +++-++.|....+.-.|...|..++-.+....  ++...-.+......++.++..+
T Consensus       104 FyG~~tAa-EIAYysYIYs~Vd~-~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f  181 (433)
T KOG3810|consen  104 FYGPATAA-EIAYYSYIYSKVDP-EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALF  181 (433)
T ss_pred             hcChHHHH-HHhhhheeeeecCH-HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhh
Confidence            88886654 44568888899998 99999999988888888888888877776533  3443333433333333333333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.29  E-value=3.5  Score=35.66  Aligned_cols=76  Identities=17%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHH-Hh----h---chHHHHHHHHHHHHhhhhchhhhhhhhhh
Q psy11010        104 SKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF-AF----G---RTYGVLFLARSLQGIGSSCSSVSGMGMLA  175 (256)
Q Consensus       104 ~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~-~~----~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  175 (256)
                      ...+...+..+..-.+..|+..|.-+..++++..+..++. .+    .   ..++..++.-++.|++.+.......++.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            3444444444555555666665434444544333332222 11    1   23555666677889988888888777766


Q ss_pred             hcccC
Q psy11010        176 ERYPD  180 (256)
Q Consensus       176 ~~~~~  180 (256)
                       .+|+
T Consensus       133 -~fp~  136 (437)
T TIGR00939       133 -VFPS  136 (437)
T ss_pred             -cCCH
Confidence             5554

>KOG3880|consensus

Probab=92.25  E-value=0.15  Score=41.41  Aligned_cols=109  Identities=10%  Similarity=0.074  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHH-----HHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhh
Q psy11010         96 KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFT-----GFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSG  170 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  170 (256)
                      .|+=|....+.+|-.+..-..-.    +--+.....     -.+++.+.-.+..+.++++..++.-+.-|+-.|..+...
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~----~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNT  363 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINL----FTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNT  363 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceE----EechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHH
Confidence            35678777777765543322111    111111111     122333334455678899988888899999999888888


Q ss_pred             hhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhh
Q psy11010        171 MGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM  209 (256)
Q Consensus       171 ~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l  209 (256)
                      .--+.+-.++ ++|-.+++....+-++|..++..++-.+
T Consensus       364 f~~i~~e~~p-d~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  364 FHNIHKETEP-DVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHhhcCCc-hHHHHhHhhheecchhhHHHHHHHhccc
Confidence            7778887777 8999999999988888888776665433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=89.09  E-value=5.5  Score=27.25  Aligned_cols=44  Identities=27%  Similarity=0.461  Sum_probs=30.4

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         96 KAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      ...+.......++..++..+.+.+.|..|.+..+.....+..+.
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            44566677777888888888888888888776665554444443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=88.20  E-value=18  Score=31.97  Aligned_cols=74  Identities=20%  Similarity=0.149  Sum_probs=55.4

Q ss_pred             HHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHH
Q psy11010        157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG  230 (256)
Q Consensus       157 ~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  230 (256)
                      +..|+........--..+.+.+|.++++...+|-++...++-.++-..+++.+.+..||+....+.-++.++..
T Consensus       290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            34666666666666677888888767788888988888888777777888999999999988776555444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=87.97  E-value=18  Score=31.87  Aligned_cols=57  Identities=18%  Similarity=0.033  Sum_probs=45.8

Q ss_pred             HHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       155 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      ..++..+..-..+.+..++=+.+.+| ..=|+.|.+.++..++|+-....+.-++.|.
T Consensus       411 ~~~l~sf~stvmFVai~AFharISDP-~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  411 QHVLSSFMSTVMFVAIMAFHARISDP-AIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCc-ccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            44555666666777788888899998 9999999999999999998877777666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PRK10263 DNA translocase FtsK; Provisional

Probab=84.61  E-value=12  Score=36.86  Aligned_cols=20  Identities=15%  Similarity=0.057  Sum_probs=9.3

Q ss_pred             HHHHHHHhhhHHHHhhhhcC
Q psy11010        105 KAFVQLLANPLVGILTHRVG  124 (256)
Q Consensus       105 ~~~~~~~~~~~~g~l~dr~G  124 (256)
                      .+.+..+|..+...+..-||
T Consensus        61 ~Nl~GiVGA~LAD~L~~LFG   80 (1355)
T PRK10263         61 HNLGGMPGAWLADTLFFIFG   80 (1355)
T ss_pred             ccccchHHHHHHHHHHHHHh
Confidence            34444444444444444455

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.61  E-value=6.2  Score=26.55  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=16.0

Q ss_pred             HHHHHHHhhhHHHHhhhhc-CchhHHHH
Q psy11010        105 KAFVQLLANPLVGILTHRV-GYSLPMFT  131 (256)
Q Consensus       105 ~~~~~~~~~~~~g~l~dr~-G~r~~l~~  131 (256)
                      -.+..++.....||+.||| |-++..++
T Consensus        51 efIsGilVGa~iG~llD~~agTsPwglI   78 (116)
T COG5336          51 EFISGILVGAGIGWLLDKFAGTSPWGLI   78 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            3344455566679999987 44444333

>KOG3574|consensus

Probab=83.84  E-value=19  Score=30.79  Aligned_cols=125  Identities=14%  Similarity=-0.008  Sum_probs=74.1

Q ss_pred             HhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHH--HH----HHHHHHHH---HHH-hhc-------hHH
Q psy11010         88 HKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFT--GF----VIMFLSTL---IFA-FGR-------TYG  150 (256)
Q Consensus        88 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~--~~----~~~~~~~~---~~~-~~~-------~~~  150 (256)
                      .-|.|.+....+++.....-..++.....|+++.  |+|+....  +.    ....+..+   ... +.+       .+.
T Consensus       292 Lle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~  369 (510)
T KOG3574|consen  292 LLEHGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYY  369 (510)
T ss_pred             HHHcCCChhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechH
Confidence            4567999988888774444444444444555443  22322211  11    11111111   111 111       222


Q ss_pred             HHHH-HHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        151 VLFL-ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       151 ~~~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      .+.+ ...+.+...-..+....++.+++.+| +.-|+.|.+.++-.++|+-.-..++.++.|...|
T Consensus       370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp-~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv  434 (510)
T KOG3574|consen  370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDP-AIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV  434 (510)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence            2222 34454555555666678888999998 9999999999999999998888888888876543

>KOG1237|consensus

Probab=82.98  E-value=8.6  Score=34.58  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy11010        148 TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ  211 (256)
Q Consensus       148 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~  211 (256)
                      |..+++--.++.|++.........=+.-+.+|+ +.|+.+.+++.+..++|..+...+......
T Consensus       457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~-sMkS~~~al~l~t~a~G~~lss~Lv~~v~~  519 (571)
T KOG1237|consen  457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPE-SMKSVATALWLLTVAVGNYLSSVLVSLVQF  519 (571)
T ss_pred             eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667778899999999999989999999998 999999999999999999999998865544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=80.20  E-value=34  Score=28.71  Aligned_cols=142  Identities=13%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             HHHHhHhhhchhhhHHHHHh---hhcCcchhHHHHHHHHH-H----HHHHhhhHHHHhhhhcC--chhHHHHHHHHHHHH
Q psy11010         70 VLDNMLLTTVEDVARENRHK---YLMGETKAVGVMFGSKA-F----VQLLANPLVGILTHRVG--YSLPMFTGFVIMFLS  139 (256)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~-~----~~~~~~~~~g~l~dr~G--~r~~l~~~~~~~~~~  139 (256)
                      .+.+...+...+....++..   +.|.++.+.+-..+... +    ..++++++.-.+.|+.|  ++..+..+..+.+++
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            34444444444443333322   34566666665555333 3    34444555556666664  577777777777777


Q ss_pred             HHHHHh--hch-------------HH---HHHHH--H-HHHHhhhhchhhhhhhhhhhcccC--cchhhHHHHHHHHHHH
Q psy11010        140 TLIFAF--GRT-------------YG---VLFLA--R-SLQGIGSSCSSVSGMGMLAERYPD--DRERGNAMGIALGGLA  196 (256)
Q Consensus       140 ~~~~~~--~~~-------------~~---~~~~~--~-~l~G~~~g~~~~~~~~~~~~~~~~--~~~r~~~~g~~~~~~~  196 (256)
                      .++...  ..|             ..   ..+..  | .+.|+.++......+.++-.|.|.  .+.+..-.|+......
T Consensus       209 ~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM  288 (354)
T PF05631_consen  209 AVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFM  288 (354)
T ss_pred             HHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHH
Confidence            665542  111             10   01111  2 257787888888888888888875  1234455666666666


Q ss_pred             HHHhhhhhHHhhhhh
Q psy11010        197 LGVLIGPPFGGIMYQ  211 (256)
Q Consensus       197 lg~~~g~~i~~~l~~  211 (256)
                      ....+|..+...+..
T Consensus       289 ~a~MlGS~lf~~l~s  303 (354)
T PF05631_consen  289 VAMMLGSSLFSRLLS  303 (354)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            666666666654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSC 165
              QL   P+    + RVG    +  G  I  L+TL+     +  VL  A ++QG+G+  
Sbjct: 49  GVSQLFYGPI----SDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGV 104

Query: 166 SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL 225
             V    +  + Y +  +  +A  +   G+ +  L+ P  GG++       A +L L  L
Sbjct: 105 GGVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163

Query: 226 AL 227
             
Sbjct: 164 CA 165

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 2/135 (1%)

Query: 95  TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 154
           T+  G +      +         ++ +R+G    +     IM +  +  +F  +   + +
Sbjct: 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI 317

Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQFV 213
            ++L         V     +  ++   R       +       L ++      G MY+ +
Sbjct: 318 LKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376

Query: 214 GKTAPFLILSALALG 228
           G    +L+L  +ALG
Sbjct: 377 GFQGAYLVLGLVALG 391

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 98  VGVMFGSKAFVQLLANPLVGILTHRVGYS---LPMFTGFVIMFLSTLIFAFGRTYGVLFL 154
            G++F + +   LL  PL G+L+ ++G     L + TG ++MF    IF FG       L
Sbjct: 45  TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104

Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDD--RERGNAMGIALGGLALGVLIGPPFGGIMYQF 212
             S+ G        +      E + +   R      G A     +G  +G    GIM+  
Sbjct: 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164

Query: 213 VGKTAPFLILSALAL 227
             +   +L      +
Sbjct: 165 NNQFVFWLGSGCALI 179

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 111 LANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGR----TYGVLFLARSLQGIGSSCS 166
            +  ++G ++ R    + +  G ++     L   F      +  V+F+   L G      
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 167 SVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP-FGGIMYQFVGKTAPFLILSAL 225
                  +   +   +ERG  + +      +G  I P  F   M  F    A   + +  
Sbjct: 137 WPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 195

Query: 226 AL 227
           A+
Sbjct: 196 AI 197

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 42/292 (14%), Positives = 81/292 (27%), Gaps = 83/292 (28%)

Query: 4   FQV--VSYGRHTREELVVRLVAEMSRVKTSGAGHRGHSSGSGQHVAHHCRKKSRE---SR 58
           F++  ++       E V+ ++ ++          R   S + +   H  + + R    S+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 59  RLV--LVIVAIALVLDN---------------MLLTT----VEDVARENRHKYLMGETKA 97
                L      LVL N               +LLTT    V D        ++  +  +
Sbjct: 242 PYENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 98  VGVMFGSKAFVQLLANPLVGILTHRVGYSLP--MFTG--FVIMFLSTLIFAFGR------ 147
           +           LL       L  R    LP  + T     +    ++I    R      
Sbjct: 296 MT--LTPDEVKSLLLK----YLDCRPQ-DLPREVLTTNPRRL----SIIAESIRDGLATW 344

Query: 148 -TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDD-RERGNAMGIALGGLALGVLIGPP- 204
             +  +   +    I SS         L    P + R+  + + +          I P  
Sbjct: 345 DNWKHVNCDKLTTIIESS---------LNVLEPAEYRKMFDRLSV----FPPSAHI-PTI 390

Query: 205 -----FGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSSHDRNINLD 251
                +  ++   V      L   +L      +   +I          I L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PS--IYLE 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.81
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.76
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.75
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.69
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.65
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.6
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.5
2xut_A	524	Proton/peptide symporter family protein; transport	99.24

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=1.2e-24  Score=184.30  Aligned_cols=179  Identities=16%  Similarity=0.197  Sum_probs=158.2

Q ss_pred             ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010         56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI  135 (256)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~  135 (256)
                      +++++.+..++++.+..++......+..|.+ .+++|.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            3455666667777777777777777777764 788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh-h
Q psy11010        136 MFLSTLIF---AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY-Q  211 (256)
Q Consensus       136 ~~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~-~  211 (256)
                      .+++.+++   .++++++.++++|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++.+. +
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999   8889999999999999999999999999999999998 99999999999999999999999999998 5


Q ss_pred             ccC-------------------------chHHHHHHHHHHHHHHhHhhhe
Q psy11010        212 FVG-------------------------KTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       212 ~~g-------------------------~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      ..+                         ||+.|++.+++.++..++.++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  229 (438)
T 3o7q_A          180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT  229 (438)
T ss_dssp             SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            554                         9999988887777666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=2.8e-25  Score=188.70  Aligned_cols=185  Identities=11%  Similarity=0.058  Sum_probs=165.5

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ++.+++.+...++..+...+....+.+..+.+ .+++ .+..+.+++.+++.++..++++++|+++||+|||++++.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34556677777888888888887777777776 5677 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010        135 IMFLSTLIFAF----GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY  210 (256)
Q Consensus       135 ~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~  210 (256)
                      +.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999999999999998 99999999999999999999999999988


Q ss_pred             hccC-chHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010        211 QFVG-KTAPFLILSALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       211 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (256)
                      +..| ||+.|++.+++.++..++.++..+++++
T Consensus       180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            9898 9999999998888777666666665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.91  E-value=2.1e-23  Score=179.36  Aligned_cols=175  Identities=16%  Similarity=0.185  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhh-----hcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKY-----LMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFV  134 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~  134 (256)
                      .+..+++..+...+......+.++.++.++     +|.+..+.+++.+++.++..+++++.|+++|| +|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~   93 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV   93 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            444555566666666666667777787777     99999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcch--hhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010        135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRE--RGNAMGIALGGLALGVLIGPPFGGIMYQF  212 (256)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--r~~~~g~~~~~~~lg~~~g~~i~~~l~~~  212 (256)
                      +.+++.++++++++++.++++|++.|++.+...+...++++|++|+ ++  |+.++++++....+|..++|.+++++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  172 (491)
T 4aps_A           94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE-HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA  172 (491)
T ss_dssp             HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc-ccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998 78  77888889999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHhHhhhe
Q psy11010        213 VGKTAPFLILSALALGDGCKCNYT  236 (256)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~  236 (256)
                      .||++.|++.++..++..++.++.
T Consensus       173 ~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          173 AGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888777766555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=8.5e-24  Score=175.76  Aligned_cols=178  Identities=19%  Similarity=0.274  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH
Q psy11010         63 VIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI  142 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~  142 (256)
                      ..+++..++..+....+.+..+.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            345566667777777777887775 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHH
Q psy11010        143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLIL  222 (256)
Q Consensus       143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~  222 (256)
                      ..++++++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++++.+..||++.|++.
T Consensus        82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999999999999999999998 99999999999999999999999999999988999999999


Q ss_pred             HHHHHHHHhHhhheeecCCC
Q psy11010        223 SALALGDGCKCNYTIVQKSS  242 (256)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~  242 (256)
                      +++.++..+...+..|++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHHCcccCC
Confidence            98888876655555665443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=4.6e-22  Score=172.36  Aligned_cols=170  Identities=11%  Similarity=0.055  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhHhhhchhhhHHHHHhhhc------CcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHHHHHHH
Q psy11010         65 VAIALVLDNMLLTTVEDVARENRHKYLM------GETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGFVIMF  137 (256)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~~~~~~  137 (256)
                      +.+..++..+..+...+.++.++.+++|      .+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            4444555555555566777888888899      9999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhhc-hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHH---HHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        138 LSTLIFAFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI---ALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~---~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      ++.+++++++ +++.++++|++.|++.+...+...+++.|++|+ ++|+++.+.   ++....+|..++|.+++++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A           97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ-SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST-TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999998 999999999999999999999999999999998 899876666   89999999999999999999989


Q ss_pred             CchHHHHHHHHHHHHHHhHhhh
Q psy11010        214 GKTAPFLILSALALGDGCKCNY  235 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~  235 (256)
                      ||++.|++.+++.++..+..++
T Consensus       176 g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988887776555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.87  E-value=2e-21  Score=166.97  Aligned_cols=180  Identities=16%  Similarity=0.129  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhc--------CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLM--------GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF  130 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~  130 (256)
                      +...+..+++.++.+++...+...++.. .++++        .+..+.|++.+.+.+|..++++++|+++||+|||++++
T Consensus        11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~   89 (491)
T 4gc0_A           11 FSITLVATLGGLLFGYDTAVISGTVESL-NTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTHHHH-HHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3344445666778888888777766554 44442        23457889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH------------------hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHH
Q psy11010        131 TGFVIMFLSTLIFA------------------FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIAL  192 (256)
Q Consensus       131 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~  192 (256)
                      ++.+++.++.++++                  ++++++.++++|+++|++.|...+...++++|+.|+ ++|++..++.+
T Consensus        90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-~~rg~~~~~~~  168 (491)
T 4gc0_A           90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-HIRGKLVSFNQ  168 (491)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-GGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HhhhhhHHhhh
Confidence            99999999999988                  478999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHhhhhhHHhhhhhc--------cCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        193 GGLALGVLIGPPFGGIMYQF--------VGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       193 ~~~~lg~~~g~~i~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      .+..+|..+++.++..+...        .+|+..+.+..+..++..+. .+..||.+
T Consensus       169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp  224 (491)
T 4gc0_A          169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESP  224 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCH
T ss_pred             hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCCh
Confidence            99999999998888766543        24777776666666664433 34455544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.81  E-value=6.5e-19  Score=149.44  Aligned_cols=177  Identities=15%  Similarity=0.075  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc--CchhHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV--GYSLPMFTGFVIMF  137 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~l~~~~~~~~  137 (256)
                      +.+....+..++............+.++++.+|.+..+.+++.+...++..++.++.|++.||+  |||+.+..+.++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            4445555555555666666667788887777899999999999999999999999999999999  99999888877766


Q ss_pred             -HHHHHHHhh--chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHhhhhhHHhhhhhcc
Q psy11010        138 -LSTLIFAFG--RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL-GVLIGPPFGGIMYQFV  213 (256)
Q Consensus       138 -~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l-g~~~g~~i~~~l~~~~  213 (256)
                       ++.++..+.  .+.+.+.+..++.|++.+...+...+++.|.+|+ ++|++++|+.+....+ |..++|.+.+++.+..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  410 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  410 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             666666665  3677777888899999998888889999999998 9999999999999999 9999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHhHhhhee
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTI  237 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~  237 (256)
                      ||+..|++.+++.+++.++.++..
T Consensus       411 g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          411 GWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888888776665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.76  E-value=2.3e-17  Score=139.16  Aligned_cols=157  Identities=13%  Similarity=0.142  Sum_probs=129.6

Q ss_pred             hHHHHHhhhc---CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q psy11010         83 ARENRHKYLM---GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQ  159 (256)
Q Consensus        83 ~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (256)
                      .+.++.+.++   .+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (417)
T 2cfq_A          243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH  322 (417)
T ss_dssp             HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHH
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4555544443   2345668888888889999999999999999999999999888888887887777877777788888


Q ss_pred             HhhhhchhhhhhhhhhhcccCcchhhHHHHH-HHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010        160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV  238 (256)
Q Consensus       160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~-~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (256)
                      +++.+...+....+++|.+|+ +.|+++.++ ++....+|..++|.++|++.+..|+...|.+.+++.+++.++.++..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          323 MFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            888777777778999999998 999999999 588889999999999999999888999999988888887766665555


Q ss_pred             cC
Q psy11010        239 QK  240 (256)
Q Consensus       239 ~~  240 (256)
                      ++
T Consensus       402 ~~  403 (417)
T 2cfq_A          402 GP  403 (417)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.75  E-value=8.7e-17  Score=135.91  Aligned_cols=164  Identities=12%  Similarity=-0.090  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHH-HHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH
Q psy11010         64 IVAIALVLDNMLLTTVEDVAREN-RHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI  142 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~  142 (256)
                      ...+..++............+.+ +++.+|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  341 (438)
T 3o7q_A          262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI  341 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            33344444444444555667778 77777999999999999999999999999999999999999999999999999888


Q ss_pred             HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHH
Q psy11010        143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLI  221 (256)
Q Consensus       143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~  221 (256)
                      ..+.++.+.++ ..++.|++.+...+...++..|.+|+ + ++++.++.. ...+|..++|.+.|++.+..| ++..|++
T Consensus       342 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  417 (438)
T 3o7q_A          342 SAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQ-D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_dssp             HHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGG-G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred             HHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhccc-c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            88887776544 44888999999999999999999986 5 888888776 566999999999999999998 9999987


Q ss_pred             HHHHHHHHHh
Q psy11010        222 LSALALGDGC  231 (256)
Q Consensus       222 ~~~~~~~~~~  231 (256)
                      .++..++..+
T Consensus       418 ~~~~~~~~~~  427 (438)
T 3o7q_A          418 PALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7666555433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.69  E-value=1.2e-17  Score=140.89  Aligned_cols=168  Identities=18%  Similarity=0.213  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH---
Q psy11010         64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST---  140 (256)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~---  140 (256)
                      .+....+..........++++.++++++|.++.+.|++.+.+.++..++++++|+++||+|||++++.+.++.++..   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~   90 (417)
T 2cfq_A           11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            34444444445556667888988888899999999999999999999999999999999999999998887765432   


Q ss_pred             HHHHhhchHH-HHHHHHHHHHhhhhchhhhhhhhhhhcccC-cchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHH
Q psy11010        141 LIFAFGRTYG-VLFLARSLQGIGSSCSSVSGMGMLAERYPD-DRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP  218 (256)
Q Consensus       141 ~~~~~~~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~  218 (256)
                      ....+.+... .++..+.+.|++.+...+.....+.++.++ .++++...|..+....+|..++|.+++++.+ .+|++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~  169 (417)
T 2cfq_A           91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFV  169 (417)
T ss_dssp             HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHH
Confidence            1112222211 233455566666655555444555555432 0355677788878889999999999999987 589999


Q ss_pred             HHHHHHHHHHHHhH
Q psy11010        219 FLILSALALGDGCK  232 (256)
Q Consensus       219 ~~~~~~~~~~~~~~  232 (256)
                      |++.++..++..+.
T Consensus       170 f~~~~~~~~~~~~~  183 (417)
T 2cfq_A          170 FWLGSGCALILAVL  183 (417)
T ss_dssp             HTTTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            98776665443333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.65  E-value=8.8e-16  Score=131.78  Aligned_cols=172  Identities=15%  Similarity=0.041  Sum_probs=132.6

Q ss_pred             HHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH-----HHHHHHHHHHHH
Q psy11010         68 ALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF-----TGFVIMFLSTLI  142 (256)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~-----~~~~~~~~~~~~  142 (256)
                      ..+.............+.+..+.++.+....+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~  370 (491)
T 4aps_A          291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL  370 (491)
T ss_dssp             HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence            333334444445556677777767777677888999999999999999999999999986654     677777777666


Q ss_pred             HHhhc---------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        143 FAFGR---------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       143 ~~~~~---------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      ..+..         +.+.+.+..++.|++.+...+...+++.|.+|+ ++|+++.|+.+....+|..++|.+.+++.+. 
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-  448 (491)
T 4aps_A          371 MAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-AFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-  448 (491)
T ss_dssp             THHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-
T ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            65532         666777888899999999999999999999998 9999999999999999999999999988764 


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ++.+.|.+.+++.++..++.++..++.+
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          449 SEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888888888877776666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.60  E-value=5.9e-15  Score=126.54  Aligned_cols=157  Identities=13%  Similarity=0.037  Sum_probs=118.2

Q ss_pred             HHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHh
Q psy11010         86 NRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG----RTYGVLFLARSLQGI  161 (256)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~  161 (256)
                      .+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..    .+....++..++...
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  381 (491)
T 4gc0_A          302 EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVA  381 (491)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3456677777777778888889999999999999999999999999888888777655432    112222222222222


Q ss_pred             h-hhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh------ccCchHHHHHHHHHHHHHHhHhh
Q psy11010        162 G-SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ------FVGKTAPFLILSALALGDGCKCN  234 (256)
Q Consensus       162 ~-~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~  234 (256)
                      + .....+....+.+|.+|. +.|++++|+.+....+|.++++.+...+.+      ..++...|++.++++++..++.+
T Consensus       382 ~~~~~~~~~~~~~~~E~fPt-~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  460 (491)
T 4gc0_A          382 AFAMSWGPVCWVLLSEIFPN-AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  460 (491)
T ss_dssp             HHHTTTTHHHHHHHHHSSCT-TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHhCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            2 223446667899999998 999999999999999999998888766543      34677789999999999888888


Q ss_pred             heeecCCCC
Q psy11010        235 YTIVQKSSS  243 (256)
Q Consensus       235 ~~~~~~~~~  243 (256)
                      ++.||++.+
T Consensus       461 ~~~PETkg~  469 (491)
T 4gc0_A          461 KFVPETKGK  469 (491)
T ss_dssp             HHCCCCTTC
T ss_pred             heecCCCCC
Confidence            888887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.50  E-value=4.1e-14  Score=117.25  Aligned_cols=160  Identities=13%  Similarity=0.057  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH-HHHH
Q psy11010         61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI-MFLS  139 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~-~~~~  139 (256)
                      .+....+..++............|.+.++.+|.++.+.+++.+...++..++.++.+++.||++++  +..+..+ ...+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~  277 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAG  277 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            344444444555555555666677777777899999999999999999999999999999999873  2333332 2222


Q ss_pred             HH--HHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010        140 TL--IFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK  215 (256)
Q Consensus       140 ~~--~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~  215 (256)
                      ..  ....  .++.+.+++..++.|++.+...+...+++.|.+|  ++|+++.|+.+....+|..++|.+.+.+.+..+|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  355 (375)
T 2gfp_A          278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG  355 (375)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            22  2222  2366667778889999999999999999999996  6899999999999999999999999999888778


Q ss_pred             hHHHHHHHH
Q psy11010        216 TAPFLILSA  224 (256)
Q Consensus       216 ~~~~~~~~~  224 (256)
                      ...+.+.++
T Consensus       356 ~~~~~~~~~  364 (375)
T 2gfp_A          356 SLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            877766443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.24  E-value=1.9e-11  Score=105.63  Aligned_cols=142  Identities=15%  Similarity=0.109  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhh----hhcCc----hhHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHH
Q psy11010         97 AVGVMFGSKAFVQLLANPLVGILT----HRVGY----SLPMFTGFVIMFLSTLIFAFG---------RTYGVLFLARSLQ  159 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~  159 (256)
                      ..+++.....++..+..++.+++.    ||.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666677777777777764    55543    356677888888887776653         3666777888999


Q ss_pred             HhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc--Cc---------hHHHHHHHHHHHH
Q psy11010        160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV--GK---------TAPFLILSALALG  228 (256)
Q Consensus       160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~--g~---------~~~~~~~~~~~~~  228 (256)
                      |++.+...+...+++.|.+|+ ++|++++|+.+....+|..++|.+.+.+.+..  +|         +..|++.+++.++
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPK-AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL  494 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCT-TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcH-HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Confidence            999999999999999999998 99999999999999999999999999988732  23         3336777777777


Q ss_pred             HHhHhhheeec
Q psy11010        229 DGCKCNYTIVQ  239 (256)
Q Consensus       229 ~~~~~~~~~~~  239 (256)
                      ..++.++..++
T Consensus       495 ~~~~~~~~~~~  505 (524)
T 2xut_A          495 AAIVFALYARS  505 (524)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHHHHH
Confidence            66655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-05
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-05
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	7e-05

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 2/182 (1%)

Query: 48  HHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAF 107
               +  R+ +   L +  I +     +          +        T+  G +      
Sbjct: 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270

Query: 108 VQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSS 167
           +         ++ +R+G    +     IM +  +  +F  +   + + ++L         
Sbjct: 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330

Query: 168 VSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQFVGKTAPFLILSALA 226
           V     +  ++   R       +       L ++      G MY+ +G    +L+L  +A
Sbjct: 331 VGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389

Query: 227 LG 228
           LG
Sbjct: 390 LG 391

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
             G++F + +   LL  PL G+L+ ++G    +      M +    F       +L    
Sbjct: 44  DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103

Query: 157 SLQGI-----GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ 211
            +  I        C +     + A      R      G A     +G  +G    GIM+ 
Sbjct: 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163

Query: 212 FVGKTAPFLILSALAL 227
              +   +L      +
Sbjct: 164 INNQFVFWLGSGCALI 179

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 18/170 (10%), Positives = 46/170 (27%), Gaps = 7/170 (4%)

Query: 47  AHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKA 106
           A       R  R  + + +        ++      +A     +        +G      +
Sbjct: 12  AAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNF-ALAMPYLVEQGFSRG-DLGFALSGIS 69

Query: 107 FVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF----AFGRTYGVLFLARSLQGIG 162
                +  ++G ++ R    + +  G ++     L          +  V+F+   L G  
Sbjct: 70  IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF 129

Query: 163 SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF 212
                      +   +     RG  + +      +G  I P    +   +
Sbjct: 130 QGMGWPPCGRTMVHWWSQKE-RGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 121 HRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPD 180
              G +   F   V +              V  +   + G       +       E  P 
Sbjct: 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374

Query: 181 DRERGNAMGIA-LGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
            +  G A G   L G   G +      G    F G    F+++   ++
Sbjct: 375 -KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 421

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.79
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.76
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.9e-24  Score=179.79  Aligned_cols=184  Identities=11%  Similarity=0.049  Sum_probs=155.5

Q ss_pred             cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010         55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV  134 (256)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~  134 (256)
                      ++.+|..+..++++.+....+...+....| ++ +++|.+.+++|++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p-~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMP-YL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHH-HT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            445666666666666666666555544444 44 4589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh----chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010        135 IMFLSTLIFAFG----RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY  210 (256)
Q Consensus       135 ~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~  210 (256)
                      +.+++.++++++    ++++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+.+..+|..++|.+++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-hcccccccccccccchhhhhhhhhhhhHh
Confidence            999999888765    4677899999999999999999999999999998 99999999999999999999999998877


Q ss_pred             hc-cCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        211 QF-VGKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       211 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +. .+|++.|++.+++.++..++.++..++.+
T Consensus       177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             hhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            65 47999999988888887777766665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.9e-19  Score=147.66  Aligned_cols=154  Identities=14%  Similarity=0.133  Sum_probs=137.4

Q ss_pred             hhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhh
Q psy11010         89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSV  168 (256)
Q Consensus        89 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  168 (256)
                      ++.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  331 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV  331 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            44455667788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCcchhhHHHHHH-HHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010        169 SGMGMLAERYPDDRERGNAMGIA-LGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSS  243 (256)
Q Consensus       169 ~~~~~~~~~~~~~~~r~~~~g~~-~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (256)
                      ...+++.|.+|+ ++|+++.++. +....+|..++|.+.|++.|+.|++..|++.+++.++..++..+..+++.+.
T Consensus       332 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         332 GCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHSCG-GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            999999999998 9999999985 5677899999999999999999999999999998888777777766554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=9.1e-18  Score=139.82  Aligned_cols=179  Identities=16%  Similarity=0.068  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHH
Q psy11010         60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS  139 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~  139 (256)
                      +.+....+..++............+.++.+..+.+..+.++..+...++..++.++.|++.||++|++..........+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  328 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  328 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence            34444444455555555555666777888888999999999999999999999999999999999876544333322222


Q ss_pred             ---HHHHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHhhhhhHHhhhhhcc
Q psy11010        140 ---TLIFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL-GVLIGPPFGGIMYQFV  213 (256)
Q Consensus       140 ---~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l-g~~~g~~i~~~l~~~~  213 (256)
                         .++...  ..+.+...++.++.|++.+...+....+..|.+|+ +.|+++.|+.+....+ |.+++|.+.|++.++.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~  407 (447)
T d1pw4a_         329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  407 (447)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               222222  45677777788889999888888889999999998 9999999998887776 5677899999999999


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeec
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQ  239 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (256)
                      ||+..|++.++..+++.++..+..++
T Consensus       408 g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         408 GWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998888777766666554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.4e-17  Score=133.99  Aligned_cols=182  Identities=15%  Similarity=0.129  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHH
Q psy11010         59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFL  138 (256)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~  138 (256)
                      .+.++.+.+..++..+......++++.++++++|.+++++|++.+++.++..++++++|+++||+|||++++.+..+..+
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34455556666666677777788889888889999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhchHHHH----HHHHHHHHhhhhchhhhhhhhhhhcccC-cchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010        139 STLIFAFGRTYGVL----FLARSLQGIGSSCSSVSGMGMLAERYPD-DRERGNAMGIALGGLALGVLIGPPFGGIMYQFV  213 (256)
Q Consensus       139 ~~~~~~~~~~~~~~----~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~  213 (256)
                      +..+..+..+....    ++.+.+.+.+.+...........+..++ ++++....+........+..++|.+++.+.+. 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  164 (417)
T d1pv7a_          86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-  164 (417)
T ss_dssp             THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-
Confidence            88888776655443    3344444444444444444444433332 13455667778888888999999999998875 


Q ss_pred             CchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010        214 GKTAPFLILSALALGDGCKCNYTIVQKS  241 (256)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (256)
                      +|+..+........+..++.++..++.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         165 NNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             cccccccchhhHHHHHHHHHHHHhcccc
Confidence            4555565555555555555555555443