Psyllid ID: psy11017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MNSRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYYLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccEEEccccHHHHccEEcc
Coil and Loop (DISEMBL)
mnsrnpppgvdyefdyttqyPVAMVTLEQDkklehkknftrnpppgvdyefdyttqYPVAMVTLAQDKKLEHMRFelvpatlnettFWRNYFYRVSLITQYFdtslssiqqpvpelwpiqfltPALVVGLSsnlyqstyyld
Flexible Loop (DISEMBL)
mnsrnpppgvdyefdyTTQYPVAMVTLEqdkklehkknftrnpppgvdYEFDYTTQYPVAMVTLAQDKKLEHMRFELVpatlnettfwRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYYLD
Low Complexity Region (SEG)
MNSRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYYLD
Disordered region (IsUnstruct)
**********DYEFDYTTQYPVAMVTLE*****************GVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYY**
Disordered Region (DISOPRED)
*****PP**VDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD***********************************YY**
Disordered Region (DISEMBL)
********GVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYYLD
Disordered Region (DISPRO)
*****PPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYYLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTYYLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q960T2	551	Synapse-associated protei	no	N/A	0.471	0.121	0.611	1e-20
Q96A49	352	Synapse-associated protei	yes	N/A	0.612	0.247	0.468	3e-18
Q9D5V6	365	Synapse-associated protei	yes	N/A	0.690	0.268	0.433	4e-18

>sp|Q960T2|SAP47_DROME Synapse-associated protein of 47 kDa OS=Drosophila melanogaster GN=Sap47 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 49/67 (73%)

Query: 34  EHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFY 93
           + ++NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + E  FWRNYFY
Sbjct: 282 QDRRNFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFY 341

Query: 94  RVSLITQ 100
           RVSLI Q
Sbjct: 342 RVSLIIQ 348

Drosophila melanogaster (taxid: 7227)

>sp|Q96A49|SYAP1_HUMAN Synapse-associated protein 1 OS=Homo sapiens GN=SYAP1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 7/94 (7%)

Query: 7   PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
           PP VD   + T Q  +  ++ +       K+NF R+PP GV + FD+   YPVA+V L +
Sbjct: 125 PPWVDTNDEETIQQQILALSAD-------KRNFLRDPPAGVQFNFDFDQMYPVALVMLQE 177

Query: 67  DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQ 100
           D+ L  MRF LVP  + E  FWRNYFYRVSLI Q
Sbjct: 178 DELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQ 211

Homo sapiens (taxid: 9606)

>sp|Q9D5V6|SYAP1_MOUSE Synapse-associated protein 1 OS=Mus musculus GN=Syap1 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 8/106 (7%)

Query: 7   PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
           PP V+   + T Q  +  ++ +       K+NF R+PP GV + FD+   YPVA+V L +
Sbjct: 139 PPWVESHDEETIQQQILALSAD-------KRNFLRDPPAGVQFNFDFDQMYPVALVMLQE 191

Query: 67  DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
           D+ L  MRF LVP  + E  FWRNYFYR+SLI Q    T+L++ QQ
Sbjct: 192 DELLSKMRFALVPKLVKEEVFWRNYFYRISLIKQSAQLTALAAQQQ 237

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
260808560	263	hypothetical protein BRAFLDRAFT_225122 [	0.676	0.365	0.504	5e-20
405977975	351	Synapse-associated protein 1 [Crassostre	0.676	0.273	0.485	2e-19
312371628	473	hypothetical protein AND_21834 [Anophele	0.492	0.147	0.585	3e-19
321471732	399	hypothetical protein DAPPUDRAFT_223760 [	0.521	0.185	0.592	5e-19
24647307	374	Synapse-associated protein 47kD, isoform	0.507	0.192	0.571	5e-19
442619337	344	Synapse-associated protein 47kD, isoform	0.507	0.209	0.571	5e-19
281361884	347	Synapse-associated protein 47kD, isoform	0.507	0.207	0.571	5e-19
17737993	351	Synapse-associated protein 47kD, isoform	0.507	0.205	0.571	5e-19
195054593	551	GH23482 [Drosophila grimshawi] gi|193896	0.471	0.121	0.611	6e-19
390178742	357	GA21388, isoform D [Drosophila pseudoobs	0.507	0.201	0.571	7e-19

>gi|260808560|ref|XP_002599075.1| hypothetical protein BRAFLDRAFT_225122 [Branchiostoma floridae] gi|229284351|gb|EEN55087.1| hypothetical protein BRAFLDRAFT_225122 [Branchiostoma floridae]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 9/105 (8%)

Query: 7   PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
           PP V Y  +   +  +  + L QDK+     NF RNPP GV ++FDY   +PVAM TL +
Sbjct: 31  PPWVGYNEEAAMKSQI--LALSQDKR-----NFMRNPPAGVQFQFDYEAMFPVAMATLQE 83

Query: 67  DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQ 111
           D  L+ MRFELVP  + E  FWRNYFYRVSLI Q   T LSS+ Q
Sbjct: 84  DSNLQKMRFELVPKQIKEENFWRNYFYRVSLIKQS--TQLSSMAQ 126

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405977975|gb|EKC42395.1| Synapse-associated protein 1 [Crassostrea gigas]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 67/105 (63%), Gaps = 9/105 (8%)

Query: 7   PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
           PP V Y  + + +  +  + L QDK+     NF RNPP GV ++FD+ + +PVAM TL +
Sbjct: 145 PPWVGYNEEESMKAQI--LALSQDKR-----NFLRNPPAGVQFQFDFESMFPVAMATLQE 197

Query: 67  DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQ 111
           D+ L  MRFELVP  + E  FWRNYFYRVSLI Q   T L+S+ Q
Sbjct: 198 DENLNKMRFELVPKQIKEEAFWRNYFYRVSLIKQS--TQLTSLAQ 240

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|312371628|gb|EFR19762.1| hypothetical protein AND_21834 [Anopheles darlingi]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 52/70 (74%)

Query: 34  EHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFY 93
           + ++NF R PP GV++EFDY + YPVA+  +  DK+LE MRFELVP  + E +FWRNYFY
Sbjct: 230 QDRRNFVRAPPAGVEFEFDYDSSYPVALAIMNDDKELEKMRFELVPKIITEESFWRNYFY 289

Query: 94  RVSLITQYFD 103
           RVSLI Q  D
Sbjct: 290 RVSLICQAAD 299

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471732|gb|EFX82704.1| hypothetical protein DAPPUDRAFT_223760 [Daphnia pulex]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 57/76 (75%), Gaps = 2/76 (2%)

Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV 95
           ++NF R+PP GVD++FDY + YP+A+ TLA+D  LE MRFELVP  + E  FWRNYFYRV
Sbjct: 214 RRNFVRSPPAGVDFQFDYDSFYPIALATLAEDPNLETMRFELVPKIIKEELFWRNYFYRV 273

Query: 96  SLITQYFDTSLSSIQQ 111
           SL+ Q   T LSS+ Q
Sbjct: 274 SLLRQS--TELSSMTQ 287

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24647307|ref|NP_732094.1| Synapse-associated protein 47kD, isoform B [Drosophila melanogaster] gi|23171423|gb|AAF55255.2| Synapse-associated protein 47kD, isoform B [Drosophila melanogaster]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 24  MVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLN 83
           ++ L QD++     NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + 
Sbjct: 277 ILGLSQDRR-----NFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIIT 331

Query: 84  ETTFWRNYFYRVSLITQ 100
           E  FWRNYFYRVSLI Q
Sbjct: 332 EENFWRNYFYRVSLIIQ 348

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442619337|ref|NP_001262617.1| Synapse-associated protein 47kD, isoform J [Drosophila melanogaster] gi|328802717|gb|AEB41030.1| MIP08376p [Drosophila melanogaster] gi|440217476|gb|AGB95997.1| Synapse-associated protein 47kD, isoform J [Drosophila melanogaster]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 24  MVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLN 83
           ++ L QD++     NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + 
Sbjct: 251 ILGLSQDRR-----NFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIIT 305

Query: 84  ETTFWRNYFYRVSLITQ 100
           E  FWRNYFYRVSLI Q
Sbjct: 306 EENFWRNYFYRVSLIIQ 322

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281361884|ref|NP_732092.2| Synapse-associated protein 47kD, isoform I [Drosophila melanogaster] gi|929571|emb|CAA56416.1| synapse-associated protein [Drosophila melanogaster] gi|272477006|gb|AAN13686.2| Synapse-associated protein 47kD, isoform I [Drosophila melanogaster]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 24  MVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLN 83
           ++ L QD++     NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + 
Sbjct: 254 ILGLSQDRR-----NFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIIT 308

Query: 84  ETTFWRNYFYRVSLITQ 100
           E  FWRNYFYRVSLI Q
Sbjct: 309 EENFWRNYFYRVSLIIQ 325

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17737993|ref|NP_524371.1| Synapse-associated protein 47kD, isoform F [Drosophila melanogaster] gi|929573|emb|CAA56415.1| synapse associated protein [Drosophila melanogaster] gi|23171424|gb|AAN13688.1| Synapse-associated protein 47kD, isoform F [Drosophila melanogaster]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 24  MVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLN 83
           ++ L QD++     NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + 
Sbjct: 254 ILGLSQDRR-----NFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIIT 308

Query: 84  ETTFWRNYFYRVSLITQ 100
           E  FWRNYFYRVSLI Q
Sbjct: 309 EENFWRNYFYRVSLIIQ 325

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054593|ref|XP_001994209.1| GH23482 [Drosophila grimshawi] gi|193896079|gb|EDV94945.1| GH23482 [Drosophila grimshawi]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 34  EHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFY 93
           + ++NF R PP GVD+EF+Y T YP A+  +A+DK LE MRFELVP  + E  FWRNYFY
Sbjct: 283 QDRRNFVRAPPAGVDFEFNYDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFY 342

Query: 94  RVSLITQ 100
           RVSLI Q
Sbjct: 343 RVSLIIQ 349

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178742|ref|XP_003736720.1| GA21388, isoform D [Drosophila pseudoobscura pseudoobscura] gi|388859574|gb|EIM52793.1| GA21388, isoform D [Drosophila pseudoobscura pseudoobscura]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 24  MVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLN 83
           ++ L QD++     NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + 
Sbjct: 264 ILGLAQDRR-----NFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIIT 318

Query: 84  ETTFWRNYFYRVSLITQ 100
           E  FWRNYFYRVSLI Q
Sbjct: 319 EENFWRNYFYRVSLIIQ 335

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
UNIPROTKB|F1NI13	351	SYAP1 "Uncharacterized protein	0.704	0.284	0.481	1.6e-19
ZFIN|ZDB-GENE-040426-917	334	syap1 "synapse associated prot	0.690	0.293	0.471	2.5e-19
UNIPROTKB|Q3T161	358	SYAP1 "Uncharacterized protein	0.690	0.273	0.471	7.3e-19
UNIPROTKB|F1SQR1	358	SYAP1 "Uncharacterized protein	0.690	0.273	0.481	1.3e-18
UNIPROTKB|E2RQL3	358	SYAP1 "Uncharacterized protein	0.690	0.273	0.471	1.7e-18
UNIPROTKB|Q96A49	352	SYAP1 "Synapse-associated prot	0.690	0.278	0.471	1.9e-18
FB|FBgn0013334	551	Sap47 "Synapse-associated prot	0.471	0.121	0.611	2.9e-18
RGD|1303113	326	Syap1 "synapse associated prot	0.690	0.300	0.452	4.6e-18
MGI|MGI:1914293	365	Syap1 "synapse associated prot	0.690	0.268	0.452	9.3e-18

UNIPROTKB|F1NI13 SYAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 52/108 (48%), Positives = 66/108 (61%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP VD   + T Q  +  + L  DK+     NF R+PP GV + FD+   YPVAMV L +
Sbjct:   125 PPWVDSNEEETIQQQI--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVAMVMLQE 177

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQPV 113
             D+ L  MRF+LVP  + E  FWRNYFYRVSLI Q    T+L++ QQ V
Sbjct:   178 DQLLNRMRFDLVPKHVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAV 225

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-917 syap1 "synapse associated protein 1" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 50/106 (47%), Positives = 66/106 (62%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP V Y  + T Q  +  + L  DK+     NF R+PP GV ++FD+   YPVA+V L +
Sbjct:   117 PPWVGYNEEETIQQQI--LALSADKR-----NFLRDPPAGVQFQFDFQHMYPVALVMLQE 169

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF+LVP  + E  FWRNYFYRVSLI Q    T+L++ QQ
Sbjct:   170 DELLNRMRFDLVPKQVKEDVFWRNYFYRVSLIKQSAQLTALAAQQQ 215

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3T161 SYAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 50/106 (47%), Positives = 65/106 (61%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP VD   + T Q  +  + L  DK+     NF R+PP GV + FD+   YPVA+V L +
Sbjct:   131 PPWVDSNDEETIQQQI--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVALVMLQE 183

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF+LVP  + E  FWRNYFYRVSLI Q    T+L++ QQ
Sbjct:   184 DELLSRMRFDLVPKLVKEDVFWRNYFYRVSLIKQSAQLTALAAQQQ 229

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SQR1 SYAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 51/106 (48%), Positives = 64/106 (60%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP VD   + T Q  V  + L  DK+     NF R+PP GV + FD+   YPVA+V L +
Sbjct:   131 PPWVDSNDEETIQQQV--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVALVMLQE 183

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF LVP  + E  FWRNYFYRVSLI Q    T+L++ QQ
Sbjct:   184 DELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQ 229

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RQL3 SYAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 50/106 (47%), Positives = 64/106 (60%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP VD   + T Q  +  + L  DK+     NF R+PP GV + FD+   YPVA+V L +
Sbjct:   131 PPWVDSNDEETIQQQI--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVALVMLQE 183

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF LVP  + E  FWRNYFYRVSLI Q    T+L++ QQ
Sbjct:   184 DELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQ 229

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q96A49 SYAP1 "Synapse-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 50/106 (47%), Positives = 64/106 (60%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP VD   + T Q  +  + L  DK+     NF R+PP GV + FD+   YPVA+V L +
Sbjct:   125 PPWVDTNDEETIQQQI--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVALVMLQE 177

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF LVP  + E  FWRNYFYRVSLI Q    T+L++ QQ
Sbjct:   178 DELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQ 223

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0013334 Sap47 "Synapse-associated protein 47kD" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 41/67 (61%), Positives = 49/67 (73%)

Query:    34 EHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFY 93
             + ++NF R PP GVD+EF Y T YP A+  +A+DK LE MRFELVP  + E  FWRNYFY
Sbjct:   282 QDRRNFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFY 341

Query:    94 RVSLITQ 100
             RVSLI Q
Sbjct:   342 RVSLIIQ 348

GO:0007268 "synaptic transmission" evidence=NAS

GO:0045202 "synapse" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA

GO:0008306 "associative learning" evidence=IMP

RGD|1303113 Syap1 "synapse associated protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 48/106 (45%), Positives = 64/106 (60%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP V+   + T Q  +  + L  DK+     NF R+PP GV + FD+   YPVA+V L +
Sbjct:   134 PPWVESHDEETIQQQI--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVALVMLQE 186

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF LVP  + E  FWRNYFYR+SLI Q    T+L++ QQ
Sbjct:   187 DELLSKMRFALVPKLVKEEVFWRNYFYRISLIKQSAQLTALAAQQQ 232

GO:0005634 "nucleus" evidence=IEA;ISO

MGI|MGI:1914293 Syap1 "synapse associated protein 1" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 9.3e-18, P = 9.3e-18
 Identities = 48/106 (45%), Positives = 64/106 (60%)

Query:     7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
             PP V+   + T Q  +  + L  DK+     NF R+PP GV + FD+   YPVA+V L +
Sbjct:   139 PPWVESHDEETIQQQI--LALSADKR-----NFLRDPPAGVQFNFDFDQMYPVALVMLQE 191

Query:    67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
             D+ L  MRF LVP  + E  FWRNYFYR+SLI Q    T+L++ QQ
Sbjct:   192 DELLSKMRFALVPKLVKEEVFWRNYFYRISLIKQSAQLTALAAQQQ 237


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       142   0.00091  102 3  11 22  0.45    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.03u 0.08s 15.11t   Elapsed:  00:00:11
  Total cpu time:  15.03u 0.08s 15.11t   Elapsed:  00:00:11
  Start:  Thu Aug 15 12:11:19 2013   End:  Thu Aug 15 12:11:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
pfam03909	60	pfam03909, BSD, BSD domain	2e-10
smart00751	51	smart00751, BSD, domain in transcription factors a	4e-08

>gnl|CDD|202804 pfam03909, BSD, BSD domain

 Score = 52.6 bits (127), Expect = 2e-10
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 44  PPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQ 100
               D EFD   +       L +D +L  +  ELVP  L+E  FW+ YFY +  I  
Sbjct: 1   FSLWDNEFDADEKKEEIQALLKEDPELRKLYNELVPKKLSEEEFWKRYFYLLLFIKL 57

This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function. Length = 60

>gnl|CDD|128990 smart00751, BSD, domain in transcription factors and synapse-associated proteins

 Score = 46.4 bits (111), Expect = 4e-08
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 50 EFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLI 98
           F    +       L ++  L+ +  ELVP  L+E  FW  YFY +  I
Sbjct: 2  SFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKI 50

Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG4310|consensus	373		99.96
PF03909	62	BSD: BSD domain ; InterPro: IPR005607 The BSD doma	99.57
smart00751	51	BSD domain in transcription factors and synapse-as	99.49
KOG4310|consensus	373		99.08
KOG2690|consensus	331		98.78
KOG2074|consensus	548		95.16
PF03909	62	BSD: BSD domain ; InterPro: IPR005607 The BSD doma	86.8
KOG2074|consensus	548		86.62

>KOG4310|consensus

Probab=99.96  E-value=6.6e-31  Score=223.92  Aligned_cols=103  Identities=35%  Similarity=0.636  Sum_probs=94.5

Q ss_pred             CCC--CCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhhchhcCcccc
Q psy11017          5 NPP--PGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATL   82 (142)
Q Consensus         5 ~pP--~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i   82 (142)
                      +.|  ||+|.+=+-.++.+  |+.|     +.|+|||||+||.+++|.|+|++++++|..||++|++|.+|||.||||.+
T Consensus       141 ~n~dlPWq~l~DEElakkQ--ilaL-----SadkRNFLRDppaaan~efdfdQ~~amA~llLk~D~~LakmRFaLVPK~V  213 (373)
T KOG4310|consen  141 ANIDLPWQDLNDEELAKKQ--ILAL-----SADKRNFLRDPPAAANFEFDFDQMQAMALLLLKEDELLAKMRFALVPKLV  213 (373)
T ss_pred             cCCCCCCCCCCHHHHHHHH--HHHh-----hccchhhccCCchhccccccHHHHHHHHHHHHccchHHhhhHHHhhHHHH
Confidence            345  89999988888777  4445     68999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhHHhhhhhhhcCcccccCCCC
Q psy11017         83 NETTFWRNYFYRVSLITQYFDTSLSSIQQPVP  114 (142)
Q Consensus        83 ~Ee~FWrnYFyrV~lIkq~~~l~~~~~~~~~~  114 (142)
                      +|++||+||||||+||||++.+.+.+.|+|.|
T Consensus       214 KEeqFWqNYFYRigLIkQS~laq~~~~qqpa~  245 (373)
T KOG4310|consen  214 KEEQFWQNYFYRIGLIKQSALAQALAAQQPAA  245 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999988888754

>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found

Probab=99.57  E-value=1.9e-15  Score=100.98  Aligned_cols=58  Identities=36%  Similarity=0.615  Sum_probs=47.4

Q ss_pred             CCCcceeecCchhHHHHHHhhcchhhhhhchhcCcccchhhhhhhhhhhhHHhhhhhh
Q psy11017         45 PGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYF  102 (142)
Q Consensus        45 ~g~~f~FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~FWrnYFyrV~lIkq~~  102 (142)
                      ...+..|+.+.....+..+|.+||+|++++.+|||+.|+|++||++|||++..+++..
T Consensus         2 ~~~~~~f~~~~~~e~i~~lL~~~p~l~~~~~~lVP~~~~e~~FW~rYf~~~~~~~~~~   59 (62)
T PF03909_consen    2 ENWDFEFDIDEQTEEIKKLLEEDPNLRKLYNELVPSKMSEEEFWKRYFYRLHKIKQKE   59 (62)
T ss_dssp             SSS--S--CHHHHHHHHHHHHH-HHHHHHHHHCCTTTS-HHHHHHHHHCHHHHHHHHH
T ss_pred             cchhhcccccCCHHHHHHHHHhCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3445667777789999999999999999999999999999999999999999998765

Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.

>smart00751 BSD domain in transcription factors and synapse-associated proteins

Probab=99.49  E-value=1.8e-14  Score=93.27  Aligned_cols=49  Identities=31%  Similarity=0.533  Sum_probs=44.4

Q ss_pred             eecCchhHHHHHHhhcchhhhhhchhcCcccchhhhhhhhhhhhHHhhh
Q psy11017         51 FDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLIT   99 (142)
Q Consensus        51 FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~FWrnYFyrV~lIk   99 (142)
                      |+.+.....+.++|+++|+|+++|.+|||+.|+|++||++||+++..++
T Consensus         3 f~~~~~~~~i~~il~~~p~l~~~~~~lVP~~~se~~FW~ryF~~~~~~~   51 (51)
T smart00751        3 FSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK   51 (51)
T ss_pred             CcccCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhhC
Confidence            4556677888999999999999999999999999999999999998763

>KOG4310|consensus

Probab=99.08  E-value=1.6e-11  Score=105.57  Aligned_cols=79  Identities=20%  Similarity=0.341  Sum_probs=69.4

Q ss_pred             CCCCCCCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhh-chhcCccc
Q psy11017          3 SRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHM-RFELVPAT   81 (142)
Q Consensus         3 ~r~pP~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~km-R~~LVPk~   81 (142)
                      +|+||+|+.|+|||+.|+++|+++|.+|+++.++| |-.+|+-..  +-.||++|++++.|++++..++.+ |-.-.|.+
T Consensus       171 LRDppaaan~efdfdQ~~amA~llLk~D~~LakmR-FaLVPK~VK--EeqFWqNYFYRigLIkQS~laq~~~~qqpa~~~  247 (373)
T KOG4310|consen  171 LRDPPAAANFEFDFDQMQAMALLLLKEDELLAKMR-FALVPKLVK--EEQFWQNYFYRIGLIKQSALAQALAAQQPAAGK  247 (373)
T ss_pred             ccCCchhccccccHHHHHHHHHHHHccchHHhhhH-HHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence            79999999999999999999999999999999999 999999988  666799999999999999888765 44445554


Q ss_pred             chh
Q psy11017         82 LNE   84 (142)
Q Consensus        82 i~E   84 (142)
                      +-|
T Consensus       248 ~~e  250 (373)
T KOG4310|consen  248 EEE  250 (373)
T ss_pred             hhh
Confidence            443

>KOG2690|consensus

Probab=98.78  E-value=4.3e-09  Score=91.36  Aligned_cols=79  Identities=20%  Similarity=0.440  Sum_probs=65.0

Q ss_pred             hhHHHhhhhhhhhhhhccccccCCCCCcc-----eeecCchhHHHHHHhhcchhhhhhchhcCcccchhhhhhhhhhhhH
Q psy11017         21 PVAMVTLEQDKKLEHKKNFTRNPPPGVDY-----EFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV   95 (142)
Q Consensus        21 pvai~~L~~D~~l~DkRnFlr~PP~g~~f-----~FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~FWrnYFyrV   95 (142)
                      ..++..|+     +|..+|.+-|-....|     .|+-+....-+..||..+|.|++|--+|||..++-+.||++|||+|
T Consensus       144 e~~L~~lq-----sd~~ty~~EP~~~~~fe~W~s~f~lDeK~eEI~~LL~gnpdir~ly~~lVP~~VshetFW~RYFy~v  218 (331)
T KOG2690|consen  144 EAQLLELQ-----SDENTYCDEPDDLEDFELWLSPFSLDEKTEEISELLEGNPDIRKLYEDLVPSEVSHETFWHRYFYKV  218 (331)
T ss_pred             HHHHHHhh-----cCccccccCCCCHHHHHHHhhccCcccchHHHHHHHhcCccHHHHHHHhCcccccHHHHHHHHHHHH
Confidence            34555665     5667787777666544     3666777788999999999999999999999999999999999999


Q ss_pred             Hhhhhhhhc
Q psy11017         96 SLITQYFDT  104 (142)
Q Consensus        96 ~lIkq~~~l  104 (142)
                      ..+.|...+
T Consensus       219 ~kleq~e~~  227 (331)
T KOG2690|consen  219 EKLEQEEAK  227 (331)
T ss_pred             HHHhHHHHH
Confidence            999887663

>KOG2074|consensus

Probab=95.16  E-value=0.014  Score=54.11  Aligned_cols=37  Identities=19%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             hhHHHHHHhhcchhhhhhchhcCcccchhhhhhhhhh
Q psy11017         56 QYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYF   92 (142)
Q Consensus        56 ~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~FWrnYF   92 (142)
                      .-.++..+-++-|.+++.--+.||+.++|+.||.+||
T Consensus       192 t~eiI~~IF~~yPaVkk~y~e~VP~nmtE~eFWtrFF  228 (548)
T KOG2074|consen  192 TSEIIEQIFETYPAVKKKYAENVPHNMTEKEFWTRFF  228 (548)
T ss_pred             CHHHHHHHHHhChHHHHHHHhhCCccccchhHHHHHH
Confidence            5678899999999999999999999999999999965

>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found

Probab=86.80  E-value=0.25  Score=32.70  Aligned_cols=57  Identities=25%  Similarity=0.274  Sum_probs=38.6

Q ss_pred             CCCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhc
Q psy11017          7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ   66 (142)
Q Consensus         7 P~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLke   66 (142)
                      |...+++|+.+.....+..+|.+|+.+...+ .-.+|....  +-+||..|+.....++.
T Consensus         1 ~~~~~~~f~~~~~~e~i~~lL~~~p~l~~~~-~~lVP~~~~--e~~FW~rYf~~~~~~~~   57 (62)
T PF03909_consen    1 PENWDFEFDIDEQTEEIKKLLEEDPNLRKLY-NELVPSKMS--EEEFWKRYFYRLHKIKQ   57 (62)
T ss_dssp             -SSS--S--CHHHHHHHHHHHHH-HHHHHHH-HHCCTTTS---HHHHHHHHHCHHHHHHH
T ss_pred             CcchhhcccccCCHHHHHHHHHhCHHHHHHH-HHhCCCCCC--HHHHHHHHHHHHHHHHH
Confidence            4566778888777888888999999998888 666766666  67789988887766543

Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.

>KOG2074|consensus

Probab=86.62  E-value=0.31  Score=45.48  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             hHHHHHHhhcchhhhhhchhcCcc-cchhhhhhhhhh
Q psy11017         57 YPVAMVTLAQDKKLEHMRFELVPA-TLNETTFWRNYF   92 (142)
Q Consensus        57 ~~~A~aLLkeDpnL~kmR~~LVPk-~i~Ee~FWrnYF   92 (142)
                      ...-.+||++||.|.|+.-++|=+ +|++++||.++.
T Consensus       116 lelk~~lLqen~~L~kl~ke~V~s~~ls~eeFWStrl  152 (548)
T KOG2074|consen  116 LELKQSLLQENPVLFKLYKELVVSKVLSPEEFWSTRL  152 (548)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHhcCCCHHHHHHHHh
Confidence            345678999999999999999865 899999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
1x3a_A	100	Solution Structure Of The Bsd Domain Of Human Synap		1e-18

>pdb|1X3A|A Chain A, Solution Structure Of The Bsd Domain Of Human Synapse Associated Protein 1 Length = 100

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV 95
           K+NF R+PP GV + FD+   YPVA+V L +D+ L  MRF LVP  + E  FWRNYFYRV
Sbjct: 25  KRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRV 84
Query: 96  SLITQ 100
           SLI Q
Sbjct: 85  SLIKQ 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1x3a_A	100	Synapse associated protein 1; BSD domain, homolog	3e-23

>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1 Length = 100

 Score = 86.2 bits (213), Expect = 3e-23
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV 95
           K+NF R+PP GV + FD+   YPVA+V L +D+ L  MRF LVP  + E  FWRNYFYRV
Sbjct: 25  KRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRV 84

Query: 96  SLITQ 100
           SLI Q
Sbjct: 85  SLIKQ 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1x3a_A	100	Synapse associated protein 1; BSD domain, homolog	99.95
1x3a_A	100	Synapse associated protein 1; BSD domain, homolog	98.43
2dii_A	61	TFIIH basal transcription factor complex P62 subun	96.62

>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1

Probab=99.95  E-value=1.2e-28  Score=179.50  Aligned_cols=95  Identities=43%  Similarity=0.750  Sum_probs=86.8

Q ss_pred             CCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhhchhcCcccchhhhh
Q psy11017          8 PGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTF   87 (142)
Q Consensus         8 ~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~F   87 (142)
                      -|++++-+.+...+++  .|     ..|++||+++||++.+|.||++.....|.++|++||+|++||++|||++|+|++|
T Consensus         4 ~~~g~~~~~~~ka~i~--~L-----~~D~~tfl~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~~~LVP~~v~e~~F   76 (100)
T 1x3a_A            4 GSSGTNDEETIQQQIL--AL-----SADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVF   76 (100)
T ss_dssp             CCCCSCTTHHHHHHHH--HH-----HTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHTTTTTSCHHHH
T ss_pred             ccCCCCcHHHHHHHHH--HH-----hcChHhhccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHHHHHCCCCcCHHHH
Confidence            4788888888887755  44     4799999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHhhhhhhhcCcccc
Q psy11017         88 WRNYFYRVSLITQYFDTSLSSI  109 (142)
Q Consensus        88 WrnYFyrV~lIkq~~~l~~~~~  109 (142)
                      |+||||||++|+|++++.++..
T Consensus        77 W~rYFyrv~~i~q~ee~r~l~~   98 (100)
T 1x3a_A           77 WRNYFYRVSLIKQSAQLTSGPS   98 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999987653

>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1

Probab=98.43  E-value=4.8e-08  Score=70.80  Aligned_cols=68  Identities=31%  Similarity=0.527  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhh
Q psy11017          3 SRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHM   73 (142)
Q Consensus         3 ~r~pP~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~km   73 (142)
                      +++||.+.+|+|+.+...+.+..+|.+|+++.++| +-.+|....  +-+||+.|++++..|++..+++.|
T Consensus        29 l~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~-~~LVP~~v~--e~~FW~rYFyrv~~i~q~ee~r~l   96 (100)
T 1x3a_A           29 LRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMR-FALVPKLVK--EEVFWRNYFYRVSLIKQSAQLTSG   96 (100)
T ss_dssp             HCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHH-HHTTTTTSC--HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHH-HHHCCCCcC--HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            36788899999999999999999999999999999 899998888  788899999999999999998865

>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1

Probab=96.62  E-value=0.00085  Score=45.29  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=32.3

Q ss_pred             chhHHHHHHhhcchhhhhhchhcCcc-cchhhhhhhhh
Q psy11017         55 TQYPVAMVTLAQDKKLEHMRFELVPA-TLNETTFWRNY   91 (142)
Q Consensus        55 ~~~~~A~aLLkeDpnL~kmR~~LVPk-~i~Ee~FWrnY   91 (142)
                      .--.....+|.+||+|+++.-.||=. .|+|++||.++
T Consensus        14 ~ELe~k~rlL~eN~~L~qLyk~LV~s~vIse~eFW~~r   51 (61)
T 2dii_A           14 KELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANR   51 (61)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             HhHHHHHHHHHhCHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            33456889999999999999999877 99999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1x3aa1	87	a.240.1.1 (A:8-94) Synapse associated protein 1, S	7e-22

>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All alpha proteins
fold: BSD domain-like
superfamily: BSD domain-like
family: BSD domain
domain: Synapse associated protein 1, SYAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (200), Expect = 7e-22
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV 95
           K+NF R+PP GV + FD+   YPVA+V L +D+ L  MRF LVP  + E  FWRNYFYRV
Sbjct: 18  KRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRV 77

Query: 96  SLITQ 100
           SLI Q
Sbjct: 78  SLIKQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1x3aa1	87	Synapse associated protein 1, SYAP1 {Human (Homo s	99.93
d1x3aa1	87	Synapse associated protein 1, SYAP1 {Human (Homo s	98.51
d2diia1	48	TFIIH basal transcription factor complex p62 subun	92.49

>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BSD domain-like
superfamily: BSD domain-like
family: BSD domain
domain: Synapse associated protein 1, SYAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-27  Score=169.12  Aligned_cols=73  Identities=52%  Similarity=0.983  Sum_probs=70.8

Q ss_pred             hhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhhchhcCcccchhhhhhhhhhhhHHhhhhhhhcC
Q psy11017         33 LEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFDTS  105 (142)
Q Consensus        33 l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~FWrnYFyrV~lIkq~~~l~  105 (142)
                      +.|++||++.||++.+|.|+++..+..|.++|++||+|++||++|||+.|+|+.||+||||||++|||+++|+
T Consensus        15 s~D~~tfl~~P~~~~~f~F~~d~~~~~i~~lL~~~~~L~~~~~~LVP~~v~e~~FW~rYF~~v~~lkq~~el~   87 (87)
T d1x3aa1          15 SADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLT   87 (87)
T ss_dssp             HTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCHHHhhcCCCcccccceeHHhhHHHHHHHHhHCHHHHHHHHHHCCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence            4788999999999999999999999999999999999999999999999999999999999999999999985

>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BSD domain-like
superfamily: BSD domain-like
family: BSD domain
domain: Synapse associated protein 1, SYAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.1e-08  Score=71.04  Aligned_cols=66  Identities=32%  Similarity=0.562  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhh
Q psy11017          3 SRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLE   71 (142)
Q Consensus         3 ~r~pP~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~   71 (142)
                      +|+||.|++|+|+++.+...|..+|.+|+.+.++| +-.+|-...  +-+||+.|++++.+|++..+|.
T Consensus        22 l~~P~~~~~f~F~~d~~~~~i~~lL~~~~~L~~~~-~~LVP~~v~--e~~FW~rYF~~v~~lkq~~el~   87 (87)
T d1x3aa1          22 LRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMR-FALVPKLVK--EEVFWRNYFYRVSLIKQSAQLT   87 (87)
T ss_dssp             HCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHH-HHTTTTTSC--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCcccccceeHHhhHHHHHHHHhHCHHHHHHH-HHHCCCCcC--HHHHHHHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999999 888888888  7788999999999999998873

>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BSD domain-like
superfamily: BSD domain-like
family: BSD domain
domain: TFIIH basal transcription factor complex p62 subunit, BTF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.019  Score=35.50  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=26.5

Q ss_pred             HHHhhcchhhhhhchhcCcc-cchhhhhhhh
Q psy11017         61 MVTLAQDKKLEHMRFELVPA-TLNETTFWRN   90 (142)
Q Consensus        61 ~aLLkeDpnL~kmR~~LVPk-~i~Ee~FWrn   90 (142)
                      -.+|++||.|-++.-.||=. .|+-|+||.|
T Consensus        13 nr~L~enp~L~qLYkdLVvs~VitseEFWan   43 (48)
T d2diia1          13 NRMLQEDPVLFQLYKDLVVSQVISAEEFWAN   43 (48)
T ss_dssp             HHHHHHCHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred             hhccccCHHHHHHHHHHHHhccccHHHHHHh
Confidence            46899999999999998755 8899999987