Psyllid ID: psy11022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MMTPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDASKRTSSPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSRSLT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccHHHcccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHEEcccccccccccEcccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmtpdfssnnslfpfttelltsatpmdtvdpstlpydwNRVARLLITTGLSvlgsvgngymiSSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVrlcmppecytffsKSHIILSVIMIWLVSILLTTLQFIYKVgpdycskkVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLarqnpsfkppvifgWDYSLMLTNMYSYIMFIVLWIPFCIVMSvasfrhqitpSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCckttvtfsrrsrgdatrpsgdvrvhiipgynmysytspqrgrdaskrtsspyrsiihiTGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVrlcmppecytffsKSHIILSVIMIWLVSILLTTLQFEKSIYSRSLT
Flexible Loop (DISEMBL)
mmtpdfssnnslFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLarqnpsfkppVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVtfsrrsrgdatrpsgdvrvhiipgynmysytspqrgrdaskRTSSPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLqfeksiysrslt
Low Complexity Region (SEG)
MMTPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDASKRTSSPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSRSLT
Disordered region (IsUnstruct)
************FPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSR***********DVRVHIIPGYNMYSY****************YRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY*****
Disordered Region (DISOPRED)
***********LFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITY************************LTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC********************************************************HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSRS**
Disordered Region (DISEMBL)
********NNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTF***********SGDVRVHIIPGYNMYSYT*************SPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSRSLT
Disordered Region (DISPRO)
*******************************STLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT*********************************************************NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDASKRTSSPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSRSLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
P97292	358	Histamine H2 receptor OS=	yes	N/A	0.510	0.701	0.253	5e-14
P49286	362	Melatonin receptor type 1	yes	N/A	0.524	0.712	0.255	5e-13
P43140	466	Alpha-1A adrenergic recep	yes	N/A	0.550	0.581	0.214	1e-12
P43141	428	Beta-4C adrenergic recept	no	N/A	0.518	0.595	0.236	1e-12
P18130	466	Alpha-1A adrenergic recep	yes	N/A	0.550	0.581	0.217	1e-12
P48039	350	Melatonin receptor type 1	no	N/A	0.548	0.771	0.241	3e-12
P47747	359	Histamine H2 receptor OS=	yes	N/A	0.514	0.704	0.247	5e-12
P25102	358	Histamine H2 receptor OS=	no	N/A	0.579	0.796	0.251	5e-12
Q61184	353	Melatonin receptor type 1	no	N/A	0.558	0.779	0.249	5e-12
P51049	347	Melatonin receptor type 1	no	N/A	0.577	0.818	0.230	7e-12

>sp|P97292|HRH2_MOUSE Histamine H2 receptor OS=Mus musculus GN=Hrh2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 33/284 (11%)

Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +  +V +   LR   N +I   A  DLL+  +V+P SA+  L+   +     ++ C
Sbjct: 35  GNVVVCLAVSLNRRLRSLTNCFIVSLAATDLLLGLLVMPFSAIYQLSFKWR---FGQVFC 91

Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
           ++   L ++    ++  L MI+++ Y  +  P       +   + +S++ IW++SI L+ 
Sbjct: 92  NIYTSLDVMLCTASILNLFMISLDRYCAVTDPLRYPVLVTPVRVAISLVFIWVISITLSF 151

Query: 177 LQFIY--------KVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLA 228
           L            + G D    KV   E+Y  + G + F++P++I C+ Y +I    ++A
Sbjct: 152 LSIHLGWNSRNGTRGGNDTFKCKVQVNEVYGLVDGMVTFYLPLLIMCVTYYRI---FKIA 208

Query: 229 RQNP-------SFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFR-----HQ 276
           R+         S+K   I     ++ L  +     FIV W P+         R     ++
Sbjct: 209 REQAKRINHISSWKAATIREHKATVTLAAVMG--AFIVCWFPYFTAFVYRGLRGDDPVNE 266

Query: 277 ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCK 320
           +      + WL  + S +N +LY   NR FR AY  LFH   CK
Sbjct: 267 VVEGI--VLWLGYANSALNPILYATLNRDFRMAYQQLFH---CK 305

The H2 subclass of histamine receptors mediates gastric acid secretion. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.
Mus musculus (taxid: 10090)

>sp|P49286|MTR1B_HUMAN Melatonin receptor type 1B OS=Homo sapiens GN=MTNR1B PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 28/286 (9%)

Query: 42  ARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMI 101
           A L++TT + V   VGN  +I SV+    LR  GN ++   ALADL+V+    P   +++
Sbjct: 45  AVLIVTTAVDV---VGNLLVILSVLRNRKLRNAGNLFLVSLALADLVVAFYPYP---LIL 98

Query: 102 LAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHII 161
           +A       + E  C    F+  L  + +V+ +  IA+  Y  +C     +  + + H  
Sbjct: 99  VAIFYDGWALGEEHCKASAFVMGLSVIGSVFNITAIAINRYCYICHSMAYHRIYRRWHTP 158

Query: 162 LSVIMIWLVSILLTTLQFI-----YKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCI 216
           L + +IWL++++     F      Y      C+   +    Y   +  + F +PI +   
Sbjct: 159 LHICLIWLLTVVALLPNFFVGSLEYDPRIYSCTFIQTASTQYTAAVVVIHFLLPIAVVSF 218

Query: 217 LYMKITYKVRLARQNPS------FKPPVIFGWDYSLMLTNMYSYIMFIVLWIPF-CIVMS 269
            Y++I   V  AR+          KP      D    LT    +++F + W P  CI ++
Sbjct: 219 CYLRIWVLVLQARRKAKPESRLCLKPS-----DLRSFLTMFVVFVIFAICWAPLNCIGLA 273

Query: 270 VASFRHQITPS-----FYYLAWLALSKSCINSVLYCISNRHFRNAY 310
           VA    ++ P      F     LA   SC+N+++Y + N++FR  Y
Sbjct: 274 VAINPQEMAPQIPEGLFVTSYLLAYFNSCLNAIVYGLLNQNFRREY 319

High affinity receptor for melatonin. Likely to mediates the reproductive and circadian actions of melatonin. The activity of this receptor is mediated by pertussis toxin sensitive G proteins that inhibit adenylate cyclase activity.

Homo sapiens (taxid: 9606)

>sp|P43140|ADA1A_RAT Alpha-1A adrenergic receptor OS=Rattus norvegicus GN=Adra1a PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 51/322 (15%)

Query: 45  LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAG 104
           +I  GL + G +GN  +I SV    HL    + YI   A+ADLL++  V+P SA+  + G
Sbjct: 31  VILGGLIIFGVLGNILVILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEILG 90

Query: 105 IKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSV 164
                    + C++   + +LC   ++  L +I+++ Y+ +  P    T  ++   + ++
Sbjct: 91  YWA---FGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGVRAL 147

Query: 165 IMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGII-----GSLFFFIPIIITCILYM 219
           + +W++S++++         P    + +  +    G +     GS  F++P+ I  ++Y 
Sbjct: 148 LCVWVLSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGS--FYVPLAIILVMYC 205

Query: 220 KI-----------------------TYKVRLARQN-PSFKPPVIFGWDYSLMLTNMYSYI 255
           ++                          +R+ R+N P+    V    + +     +  + 
Sbjct: 206 RVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNVPAEGGGVSSAKNKTHFSVRLLKFS 265

Query: 256 M--------------FIVLWIPFCIVMSVASFRHQITPS---FYYLAWLALSKSCINSVL 298
                          F++ W+PF +VM + SF     PS   F  + WL    SCIN ++
Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFKIVFWLGYLNSCINPII 325

Query: 299 YCISNRHFRNAYINLFHYCCCK 320
           Y  S++ F+ A+ N+    C +
Sbjct: 326 YPCSSQEFKKAFQNVLRIQCLR 347

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Rattus norvegicus (taxid: 10116)

>sp|P43141|ADB4C_MELGA Beta-4C adrenergic receptor OS=Meleagris gallopavo GN=ADRB4C PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 131/300 (43%), Gaps = 45/300 (15%)

Query: 56  VGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115
            GN  +I ++     L+   N ++   A ADL++  +V+P  A ++L+G     P   ++
Sbjct: 39  AGNLLVIVAIAKTPRLQTMTNVFVTSLACADLVMGLLVVPPGATILLSG---HWPYGTVV 95

Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C +   L +LC   ++ TL  IA++ Y+ +  P +     +K      V M+W +S  ++
Sbjct: 96  CELWTSLDVLCVTASIETLCAIAVDRYLAITAPLQYEALVTKGRAWAVVCMVWAISAFIS 155

Query: 176 TLQFI---YKVGPD----------YCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKI- 221
            L  +   ++ G D           C   V+ M  Y  +  ++ F++P+++   +Y+++ 
Sbjct: 156 FLPIMNHWWRDGADEQAVRCYDDPRCCDFVTNMT-YAIVSSTVSFYVPLLVMIFVYVRVF 214

Query: 222 -----------TYKVRLARQNPSF--------KPPVIFGWDYSLMLTNMYSYIM--FIVL 260
                        KVR  ++NPS         +P  +        L  +   IM  F + 
Sbjct: 215 AVATRHVQLIGKDKVRFLQENPSLSSRGGRWRRPSRLLAIKEHKALKTL-GIIMGTFTLC 273

Query: 261 WIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318
           W+PF +   +  F   + P   F +L WL    S  N ++YC S   FR+A+  L   CC
Sbjct: 274 WLPFFVANIIKVFCRPLVPDQLFLFLNWLGYVNSAFNPIIYCRSP-DFRSAFRKLL--CC 330

Beta-adrenergic receptors mediate the catecholamine-induced activation of adenylate cyclase through the action of G proteins.

Meleagris gallopavo (taxid: 9103)

>sp|P18130|ADA1A_BOVIN Alpha-1A adrenergic receptor OS=Bos taurus GN=ADRA1A PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 135/322 (41%), Gaps = 51/322 (15%)

Query: 45  LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAG 104
           +I  GL + G +GN  +I SV    HL    + YI   A+ADLL++  V+P SA+  + G
Sbjct: 31  VILGGLILFGVLGNILVILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEILG 90

Query: 105 IKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSV 164
                    + C+V   + +LC   ++  L +I+++ Y+ +  P    T  ++   ++++
Sbjct: 91  YWA---FGRVFCNVWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQKRGLMAL 147

Query: 165 IMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGII-----GSLFFFIPIIITCILYM 219
           + +W +S++++         P    + +  +    G +     GS  F++P+ I  ++Y 
Sbjct: 148 LCVWALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGS--FYVPLTIILVMYC 205

Query: 220 KI-----------------------TYKVRLARQNPSFKPPVI---------------FG 241
           ++                          +R+ R+N       +               F 
Sbjct: 206 RVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNAQVGGSGVTSAKNKTHFSVRLLKFS 265

Query: 242 WDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPS---FYYLAWLALSKSCINSVL 298
            +     T       F++ W+PF +VM + SF     PS   F    WL    SCIN ++
Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFRPSETVFKIAFWLGYLNSCINPII 325

Query: 299 YCISNRHFRNAYINLFHYCCCK 320
           Y  S++ F+ A+ N+    C +
Sbjct: 326 YPCSSQEFKKAFQNVLRIQCLR 347

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Bos taurus (taxid: 9913)

>sp|P48039|MTR1A_HUMAN Melatonin receptor type 1A OS=Homo sapiens GN=MTNR1A PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 36/306 (11%)

Query: 52  VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
           V+  +GN  +I SV     LR  GN ++   A+ADL+V+    P+   ++++       +
Sbjct: 39  VVDILGNLLVILSVYRNKKLRNAGNIFVVSLAVADLVVAIYPYPL---VLMSIFNNGWNL 95

Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
             + C V  FL  L  + +++ +  IA+  Y  +C   +    +S  + +  V++IWL++
Sbjct: 96  GYLHCQVSGFLMGLSVIGSIFNITGIAINRYCYICHSLKYDKLYSSKNSLCYVLLIWLLT 155

Query: 172 ILLT-------TLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYK 224
           +          TLQ+  ++    C+   S    Y   +    F +P+II    Y++I   
Sbjct: 156 LAAVLPNLRAGTLQYDPRIYS--CTFAQSVSSAYTIAVVVFHFLVPMIIVIFCYLRIWIL 213

Query: 225 VRLARQ------NPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIV-MSVASFRHQI 277
           V   RQ       P  KP      D+   +T    +++F + W P   + ++VAS    +
Sbjct: 214 VLQVRQRVKPDRKPKLKPQ-----DFRNFVTMFVVFVLFAICWAPLNFIGLAVASDPASM 268

Query: 278 TPSF--------YYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRS 329
            P          YY+A+     SC+N+++Y + N++FR  Y  +     C   V F   S
Sbjct: 269 VPRIPEWLFVASYYMAYF---NSCLNAIIYGLLNQNFRKEYRRII-VSLCTARVFFVDSS 324

Query: 330 RGDATR 335
              A R
Sbjct: 325 NDVADR 330

High affinity receptor for melatonin. Likely to mediates the reproductive and circadian actions of melatonin. The activity of this receptor is mediated by pertussis toxin sensitive G proteins that inhibit adenylate cyclase activity.

Homo sapiens (taxid: 9606)

>sp|P47747|HRH2_CAVPO Histamine H2 receptor OS=Cavia porcellus GN=HRH2 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 126/283 (44%), Gaps = 30/283 (10%)

Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +  +V +   LR   N +I   A+ DLL+  +V+P SA+  L+         ++ C
Sbjct: 35  GNVVVCLAVGLNRRLRSLTNCFIVSLAVTDLLLGLLVLPFSAIYQLSC---KWSFSKVFC 91

Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
           ++   L ++    ++  L MI+++ Y  +  P       + + + +S++ IW++SI L+ 
Sbjct: 92  NIYTSLDVMLCTASILNLFMISLDRYCAVTDPLRYPVLITPARVAISLVFIWVISITLSF 151

Query: 177 LQF---------IYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRL 227
           L             K        KV   E+Y  + G + F++P++I CI Y +I    ++
Sbjct: 152 LSIHLGWNSRNETSKDNDTIVKCKVQVNEVYGLVDGLVTFYLPLLIMCITYFRI---FKI 208

Query: 228 ARQNP-------SFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPS 280
           AR+         S+K   I     ++ L  +     FI+ W P+  V      +     +
Sbjct: 209 AREQARRINHIGSWKAATIREHKATVTLAAVMG--AFIICWFPYFTVFVYRGLKGDDAVN 266

Query: 281 FYY---LAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCK 320
             +   + WL  + S +N +LY   NR FR AY  LF   CC+
Sbjct: 267 EVFEDVVLWLGYANSALNPILYAALNRDFRTAYHQLF---CCR 306

The H2 subclass of histamine receptors mediates gastric acid secretion. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Cavia porcellus (taxid: 10141)

>sp|P25102|HRH2_RAT Histamine H2 receptor OS=Rattus norvegicus GN=Hrh2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 136/314 (43%), Gaps = 29/314 (9%)

Query: 25  PMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEAL 84
           P  TV    L     +V   ++ T L ++   GN  +  +V +   LR   N +I   A 
Sbjct: 3   PNGTVHSCCLDSMALKVTISVVLTTLILITIAGNVVVCLAVSLNRRLRSLTNCFIVSLAA 62

Query: 85  ADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVR 144
            DLL+  +V+P SA+  L+          + C++   L ++    ++  L MI+++ Y  
Sbjct: 63  TDLLLGLLVLPFSAIYQLSF---TWSFGHVFCNIYTSLDVMLCTASILNLFMISLDRYCA 119

Query: 145 LCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY--------KVGPDYCSKKVSYME 196
           +  P       +   + +S++ IW++SI L+ L            + G D    KV   E
Sbjct: 120 VTDPLRYPVLVTPVRVAISLVFIWVISITLSFLSIHLGWNSRNGTRGGNDTFKCKVQVNE 179

Query: 197 LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNP-------SFKPPVIFGWDYSLMLT 249
           +Y  + G + F++P++I C+ Y +I    ++AR+         S+K   I     ++ L 
Sbjct: 180 VYGLVDGLVTFYLPLLIMCVTYYRI---FKIAREQAKRINHISSWKAATIREHKATVTLA 236

Query: 250 NMYSYIMFIVLWIPFCIVMSVASFRHQ--ITPSFYYLA-WLALSKSCINSVLYCISNRHF 306
            +     FI+ W P+         R    I  +   +  WL  + S +N +LY   NR F
Sbjct: 237 AVMG--AFIICWFPYFTAFVYRGLRGDDAINEAVEGIVLWLGYANSALNPILYAALNRDF 294

Query: 307 RNAYINLFHYCCCK 320
           R AY  LFH   CK
Sbjct: 295 RTAYQQLFH---CK 305

The H2 subclass of histamine receptors mediates gastric acid secretion. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Rattus norvegicus (taxid: 10116)

>sp|Q61184|MTR1A_MOUSE Melatonin receptor type 1A OS=Mus musculus GN=Mtnr1a PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 26/301 (8%)

Query: 52  VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
           V+  +GN  +I SV     LR  GN ++   A+ADL+V+    P+    IL        +
Sbjct: 42  VVDILGNLLVILSVYRNKKLRNSGNIFVVSLAVADLVVAVYPYPLVLTSIL---NNGWNL 98

Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
             + C V  FL  L  + +++ +  IAM  Y  +C   +    +S  + +  V +IW+++
Sbjct: 99  GYLHCQVSAFLMGLSVIGSIFNITGIAMNRYCYICHSLKYDKIYSNKNSLCYVFLIWMLT 158

Query: 172 IL-----LTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKI---TY 223
           ++     L T    Y      C+   S    Y   +    F +P+II    Y++I     
Sbjct: 159 LIAIMPNLQTGTLQYDPRIYSCTFTQSVSSAYTIAVVVFHFIVPMIIVIFCYLRIWVLVL 218

Query: 224 KVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIV-MSVASFRHQITPSF- 281
           +VR  R  P  KP  +   D+   +T    +++F + W P  ++ + VAS    + P   
Sbjct: 219 QVR-RRVKPDNKPK-LKPQDFRNFVTMFVVFVLFAICWAPLNLIGLIVASDPATMVPRIP 276

Query: 282 -------YYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDAT 334
                  YYLA+     SC+N+++Y + N++FR  Y  +     C   + F   S  +A 
Sbjct: 277 EWLFVASYYLAYF---NSCLNAIIYGLLNQNFRKEYKKII-VSLCTAKMFFVESSNEEAD 332

Query: 335 R 335
           +
Sbjct: 333 K 333

High affinity receptor for melatonin. Likely to mediates the reproductive and circadian actions of melatonin. The activity of this receptor is mediated by pertussis toxin sensitive G proteins that inhibit adenylate cyclase activity.

Mus musculus (taxid: 10090)

>sp|P51049|MR1BB_DANRE Melatonin receptor type 1B-B OS=Danio rerio GN=mtnr1bb PE=2 SV=2

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 24/308 (7%)

Query: 44  LLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILA 103
           L+ TT + VLG   N  +I SV     LR  GN ++   A ADL+V+    P+   ++ A
Sbjct: 38  LIFTTVVDVLG---NLLVIISVFRNRKLRNAGNVFVVSLAFADLVVAFYPYPL---VLYA 91

Query: 104 GIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILS 163
                  + E  C +  FL  L  + +V+ +  IA+  Y  +C        +S  + +L 
Sbjct: 92  IFHDGWSLGETQCKISGFLMGLSVIGSVFNITGIAINRYCYICHSFAYGRLYSFRNTLLL 151

Query: 164 VIMIWLVSILLTTLQFI-----YKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILY 218
           V +IW +++L     F      Y      C+   +    Y  ++  + F +PI +    Y
Sbjct: 152 VALIWALTVLAILPNFFVGSLSYDPRVYSCTFTQTASSSYTVVVVVVHFLVPIAVVTFCY 211

Query: 219 MKI-TYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQI 277
           ++I    +++ R+  S +   +   D    +T    +++F + W P  ++  V +   ++
Sbjct: 212 LRIWVLVIQVRRKVKSEERSRVRPSDLRNFVTMFVVFVLFAICWAPLNLIGLVVAINPEV 271

Query: 278 ----TPSFYYLA--WLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRG 331
                P + ++   ++A   SC+N+++Y + NR+FR  Y+ +       T V   RR   
Sbjct: 272 MAPRVPEWLFVVSYFMAYFNSCLNAIIYGLLNRNFRKEYVRIM------TAVWIPRRFVT 325

Query: 332 DATRPSGD 339
           + +R + D
Sbjct: 326 ETSRAATD 333

High affinity receptor for melatonin. The activity of this receptor is mediated by pertussis toxin sensitive G proteins that inhibits adenylate cyclase activity.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
328701295	403	PREDICTED: alpha-1A adrenergic receptor-	0.678	0.828	0.607	1e-122
189235262	3197	PREDICTED: similar to AGAP005356-PA [Tri	0.703	0.108	0.538	1e-114
270004135	359	hypothetical protein TcasGA2_TC003453 [T	0.703	0.963	0.538	1e-107
242020744	388	G-protein coupled octopamine receptor, p	0.715	0.907	0.526	1e-101
340715965	376	PREDICTED: neuropeptide Y receptor-like	0.672	0.880	0.488	2e-89
350419966	376	PREDICTED: neuropeptide Y receptor-like	0.664	0.869	0.489	3e-89
383860183	359	PREDICTED: neuropeptide Y receptor-like	0.666	0.913	0.492	3e-87
328776745	356	PREDICTED: neuropeptide Y receptor-like	0.668	0.924	0.473	1e-82
345484578	395	PREDICTED: alpha-1B adrenergic receptor-	0.668	0.832	0.460	3e-81
158294045	456	AGAP005356-PA [Anopheles gambiae str. PE	0.670	0.723	0.459	2e-77

>gi|328701295|ref|XP_001946275.2| PREDICTED: alpha-1A adrenergic receptor-like [Acyrthosiphon pisum]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/339 (60%), Positives = 259/339 (76%), Gaps = 5/339 (1%)

Query: 27  DTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALAD 86
           D V P TL  +W+RVARLLI  GLSV+GS+GN YMISSVMIEDHL +RGNT++A  ALAD
Sbjct: 31  DAVSPVTLSMEWSRVARLLIMIGLSVIGSIGNVYMISSVMIEDHLNKRGNTFVANVALAD 90

Query: 87  LLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC 146
           LL+SG+VIP SAV+IL+G++ + P+    C  QWFL++LC LVTV T+A +A ENY+RLC
Sbjct: 91  LLISGLVIPASAVVILSGLQDSPPV----CQFQWFLSILCCLVTVLTMAAVAAENYIRLC 146

Query: 147 MPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLF 206
           + PECY   + + I   +  IW++S +L TLQ +Y +GPDYC+KK+S +   Q +     
Sbjct: 147 LTPECYAKLTVTKITTLLFAIWIISSILVTLQSVYNMGPDYCNKKISRIVPTQALTAGAI 206

Query: 207 FFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCI 266
              P++IT  LYM+ITY+V +AR NPSFKPP+ F WDYSLML N YS++MF+V W PF I
Sbjct: 207 VLAPLLITAGLYMRITYQVHVARLNPSFKPPLAFNWDYSLMLANAYSFVMFVVFWAPFTI 266

Query: 267 VMSVASF-RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTF 325
           V+++A+  R Q    FY LAWLALSKSC N+++YC  NRHFRNAY+NLFHYCCCKTTVTF
Sbjct: 267 VLALATIQRQQSAQVFYNLAWLALSKSCFNNLVYCAGNRHFRNAYVNLFHYCCCKTTVTF 326

Query: 326 SRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDASK 364
           SRR+R  ATRPSGDVRVHIIPGYNMYSYTSP R R++  
Sbjct: 327 SRRARDGATRPSGDVRVHIIPGYNMYSYTSPTRSRESGS 365

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235262|ref|XP_001814462.1| PREDICTED: similar to AGAP005356-PA [Tribolium castaneum]

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 190/353 (53%), Positives = 252/353 (71%), Gaps = 7/353 (1%)

Query: 17   TELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGN 76
            + +  S   M++V P TL  DW+R+ARL+    L+ +GSVGN +MIS+VMIED+LR+RGN
Sbjct: 2841 SNMTDSKLGMESVSPVTLSSDWSRLARLIFLASLAAVGSVGNVFMISAVMIEDYLRKRGN 2900

Query: 77   TYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAM 136
            T++   A ADLLV+G+VIP SAV+ILAG+ +  P+    C  QWFL  LC LVTV +L  
Sbjct: 2901 TFVVSVAFADLLVTGLVIPASAVVILAGLPENLPV----CKFQWFLATLCFLVTVLSLTA 2956

Query: 137  IAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYME 196
            IA ENYVRLC     Y   S+S I   ++++W+VS + ++LQF   +  DYC++K   + 
Sbjct: 2957 IAAENYVRLCYSSTTYDLLSRSKITTILLLLWIVSSVTSSLQFATDLTFDYCTRKNPGLI 3016

Query: 197  LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIM 256
             YQ  IG +F F+PII+T   Y++  Y +R A+  P+FKPPV F WDYSLM +N+YS+++
Sbjct: 3017 PYQATIGVVFVFLPIILTFFSYVRTAYHIRRAKTRPNFKPPVTFNWDYSLMHSNLYSFLL 3076

Query: 257  FIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHY 316
            F+V W+PF +V++V + +      FY LAWL ++KSCINS+LYCI+NRHFR AY+NLFHY
Sbjct: 3077 FVVFWLPFGVVLAVGTVKEVHNSLFYKLAWLGITKSCINSILYCITNRHFRGAYVNLFHY 3136

Query: 317  CCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDA-SKRTSS 368
            CCCKTTVTFSRR R +  RPSGDVRVHIIPGYNM  Y SPQR R+  SKR SS
Sbjct: 3137 CCCKTTVTFSRRQRPEGVRPSGDVRVHIIPGYNM--YCSPQRSREGQSKRCSS 3187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004135|gb|EFA00583.1| hypothetical protein TcasGA2_TC003453 [Tribolium castaneum]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/353 (53%), Positives = 252/353 (71%), Gaps = 7/353 (1%)

Query: 17  TELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGN 76
           + +  S   M++V P TL  DW+R+ARL+    L+ +GSVGN +MIS+VMIED+LR+RGN
Sbjct: 3   SNMTDSKLGMESVSPVTLSSDWSRLARLIFLASLAAVGSVGNVFMISAVMIEDYLRKRGN 62

Query: 77  TYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAM 136
           T++   A ADLLV+G+VIP SAV+ILAG+ +  P+    C  QWFL  LC LVTV +L  
Sbjct: 63  TFVVSVAFADLLVTGLVIPASAVVILAGLPENLPV----CKFQWFLATLCFLVTVLSLTA 118

Query: 137 IAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYME 196
           IA ENYVRLC     Y   S+S I   ++++W+VS + ++LQF   +  DYC++K   + 
Sbjct: 119 IAAENYVRLCYSSTTYDLLSRSKITTILLLLWIVSSVTSSLQFATDLTFDYCTRKNPGLI 178

Query: 197 LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIM 256
            YQ  IG +F F+PII+T   Y++  Y +R A+  P+FKPPV F WDYSLM +N+YS+++
Sbjct: 179 PYQATIGVVFVFLPIILTFFSYVRTAYHIRRAKTRPNFKPPVTFNWDYSLMHSNLYSFLL 238

Query: 257 FIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHY 316
           F+V W+PF +V++V + +      FY LAWL ++KSCINS+LYCI+NRHFR AY+NLFHY
Sbjct: 239 FVVFWLPFGVVLAVGTVKEVHNSLFYKLAWLGITKSCINSILYCITNRHFRGAYVNLFHY 298

Query: 317 CCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDA-SKRTSS 368
           CCCKTTVTFSRR R +  RPSGDVRVHIIPGYNM  Y SPQR R+  SKR SS
Sbjct: 299 CCCKTTVTFSRRQRPEGVRPSGDVRVHIIPGYNM--YCSPQRSREGQSKRCSS 349

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020744|ref|XP_002430811.1| G-protein coupled octopamine receptor, putative [Pediculus humanus corporis] gi|212516014|gb|EEB18073.1| G-protein coupled octopamine receptor, putative [Pediculus humanus corporis]

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/357 (52%), Positives = 256/357 (71%), Gaps = 5/357 (1%)

Query: 11  SLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDH 70
           S+  F +  LTS+T  +++ P TL  DW+RVA+LL+ T LSV GSVGN +MISSVMIED+
Sbjct: 12  SVLRFGSLTLTSST-TESISPVTLNSDWSRVAKLLLLTALSVTGSVGNVFMISSVMIEDN 70

Query: 71  LRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVT 130
           L++RGN+++   ALAD+L++G+VIP S V+ILA +  A   K ++C+ QWFL L+  LV+
Sbjct: 71  LKKRGNSFLVNIALADILITGLVIPASTVVILADLTDA---KFVVCNFQWFLALVSCLVS 127

Query: 131 VWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSK 190
           V T++  A+ENY RLCMPP+CY   +   I   +I IW++S    T+Q +  +GPDYC +
Sbjct: 128 VLTISATAVENYARLCMPPDCYNNLTPCKITTIIIFIWIISCTAVTIQTVLDLGPDYCKR 187

Query: 191 KVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTN 250
               +  YQ  IG +F FIP I+T   +  ITY+V+  +  P+F+PPV F  DY LM +N
Sbjct: 188 TSQGLLPYQISIGVVFVFIPAIVTFSFFSLITYRVKTFKSIPTFRPPVTFTSDYELMKSN 247

Query: 251 MYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAY 310
           MY +I F++ W+PF + +++ S +      FY LAWLALSKSC  + LYC++NRHFRNAY
Sbjct: 248 MYGFIFFVMFWLPFGLTLALGSIQTISQRIFYSLAWLALSKSCFLNFLYCLTNRHFRNAY 307

Query: 311 INLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQRGRDASKRTS 367
           +NLFHYCCCKTTV+FSRRSR +  RP+GDVRVHIIPGY+MYSYTSPQR RD + +TS
Sbjct: 308 VNLFHYCCCKTTVSFSRRSR-EHVRPTGDVRVHIIPGYDMYSYTSPQRSRDVAAKTS 363

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715965|ref|XP_003396476.1| PREDICTED: neuropeptide Y receptor-like [Bombus terrestris]

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 165/338 (48%), Positives = 227/338 (67%), Gaps = 7/338 (2%)

Query: 29  VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
           + P TL   W+RVARLL+   ++V GSVGN +MIS+V++ED L++RGN ++   ALADLL
Sbjct: 39  ISPVTLSSAWSRVARLLLLASMAVGGSVGNVFMISAVVVEDQLKKRGNAFLVNVALADLL 98

Query: 89  VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
           V+G+VIPVS ++ILAG +++       C  +  L  LC LVTV TLA IA ENY RLC+P
Sbjct: 99  VTGLVIPVSVIVILAGHEESLS----TCRFECTLEALCFLVTVLTLATIAAENYTRLCLP 154

Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFF 208
           PE Y   + S + +++I +WL+S++   LQ    VGPD+C ++ S + + Q I  ++   
Sbjct: 155 PERYAVLTSSRVTVTIISVWLISVMTVVLQSSLDVGPDFCRRRFSGIAMEQIIGATVLVG 214

Query: 209 IPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM 268
           +P ++T  LY+K+  +VR A +  S+KPPV F WDY L   NMYS +MF++ W+PF IV+
Sbjct: 215 LPTLMTTFLYVKLVIRVRHATRG-SYKPPVAFSWDYELTKANMYSCVMFVIFWLPFGIVV 273

Query: 269 SVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRR 328
            V SFR      FY LAW ALSKSC N++LYC+++RHFR+AY+ LFHYCCCKTTV+FSRR
Sbjct: 274 CVNSFRPISARVFYNLAWFALSKSCFNNLLYCVADRHFRSAYVKLFHYCCCKTTVSFSRR 333

Query: 329 SRGDATRPSGDV--RVHIIPGYNMYSYTSPQRGRDASK 364
           +RGD  R + DV  RVHII  Y       P  GR   +
Sbjct: 334 TRGDGGRSASDVRLRVHIIHSYASPGTCRPPAGRPNGR 371

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419966|ref|XP_003492355.1| PREDICTED: neuropeptide Y receptor-like [Bombus impatiens]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/339 (48%), Positives = 229/339 (67%), Gaps = 12/339 (3%)

Query: 29  VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
           + P TL   W+RVARLL+   ++V GSVGN +MIS+V++ED L++RGN ++   ALADLL
Sbjct: 39  ISPVTLSSAWSRVARLLLLASMAVGGSVGNVFMISAVVVEDQLKKRGNAFLVNVALADLL 98

Query: 89  VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
           V+G+VIPVS ++ILAG +++       C  +  L  LC LVTV TLA IA ENY RLC+P
Sbjct: 99  VTGLVIPVSVIVILAGHEESLS----TCRFECTLEALCFLVTVLTLATIAAENYTRLCLP 154

Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFF 208
           PE Y   + S +  ++I +WL+S+++  LQ    VGPD+C ++ S + + Q I  ++   
Sbjct: 155 PERYAVLTSSRVTATIISVWLISVMMVVLQSSLDVGPDFCRRRFSGIAMEQIIGATVLVG 214

Query: 209 IPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM 268
           +P ++T  LY+K+  +VR A +  S+KPPV F WDY L   NMYS +MF++ W+PF IV+
Sbjct: 215 LPTLMTTFLYVKLVIRVRHATRG-SYKPPVAFSWDYELTKANMYSCVMFVIFWLPFGIVV 273

Query: 269 SVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRR 328
            V SFR       Y LAW ALSKSC N++LYC+++RHFR+AY+ LFHYCCCKTTV+FSRR
Sbjct: 274 CVNSFRPISARVLYNLAWFALSKSCFNNLLYCVADRHFRSAYVKLFHYCCCKTTVSFSRR 333

Query: 329 SRGDATRPSGDV--RVHIIPGYNMYSYTSPQRGRDASKR 365
           +RGD  R + DV  RVHII     +SY SP   R  + R
Sbjct: 334 TRGDGGRSASDVRLRVHII-----HSYASPGTCRPPAGR 367

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860183|ref|XP_003705570.1| PREDICTED: neuropeptide Y receptor-like [Megachile rotundata]

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 167/339 (49%), Positives = 227/339 (66%), Gaps = 11/339 (3%)

Query: 29  VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
           + P TL   W+RVARLL+   ++V GSVGN +MIS+V++ED L++RGN ++   ALADLL
Sbjct: 22  ISPVTLSSAWSRVARLLLLASMAVAGSVGNVFMISAVVVEDQLKKRGNAFLVNVALADLL 81

Query: 89  VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
           V+G+VIPVS ++ILAG +++       C  +  L  LC LVTV TLA IA ENY RLC+P
Sbjct: 82  VTGMVIPVSVIVILAGHEESLS----TCRFECTLEALCFLVTVLTLATIAAENYTRLCLP 137

Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFF 208
            E Y   + S +  ++I +WL+SI+   LQ    VGPD+C ++ S + + Q I  +L   
Sbjct: 138 AERYASLTPSRVTATIIGVWLISIMTVVLQSSLDVGPDFCRRRFSGIAMEQIIGATLLVG 197

Query: 209 IPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM 268
           +P +IT  LY+K+  +VR A +  S+KPP+ F WDY L   NMYS +MF++ W+PF I +
Sbjct: 198 LPALITTFLYVKLVIRVRHATRG-SYKPPITFSWDYELCKANMYSCVMFVIFWLPFGIAV 256

Query: 269 SVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRR 328
            V SFR       Y LAW ALSKSC N+++YC+++RHFRNAY+ LFHYCCCKTTV+FSRR
Sbjct: 257 CVNSFRPISARVLYNLAWFALSKSCFNNLVYCVADRHFRNAYVKLFHYCCCKTTVSFSRR 316

Query: 329 SRGDATRPSGDVR--VHIIPGY-NMYSYTSP---QRGRD 361
           +RG+A R + DVR  VHII  Y +  SY  P     GRD
Sbjct: 317 TRGEAGRNASDVRFKVHIIQSYASPGSYRPPVSRPNGRD 355

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776745|ref|XP_393375.4| PREDICTED: neuropeptide Y receptor-like [Apis mellifera]

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/340 (47%), Positives = 226/340 (66%), Gaps = 11/340 (3%)

Query: 29  VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
           + P TL   W+RVARLL+   ++V GSVGN +MIS+V++ED L++RGN ++   ALADLL
Sbjct: 19  ISPVTLSSAWSRVARLLLLASMAVGGSVGNVFMISAVVVEDQLKKRGNAFLVNVALADLL 78

Query: 89  VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
           V+G+VIPVS ++ILAG +++       C  +  L  LC LVTV TL  IA ENY RLC+P
Sbjct: 79  VTGLVIPVSVIVILAGHEESLS----TCRFECTLEALCFLVTVLTLTTIAAENYTRLCLP 134

Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLFFF 208
            E Y   + S +  ++I +WL+S +   LQ    VGPD+C ++ + + + Q IIG+ F  
Sbjct: 135 HERYGVLTPSRVTATIISVWLISAMTVVLQSSLDVGPDFCRRRFTGIAMEQ-IIGATFLV 193

Query: 209 -IPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIV 267
            +P + T  LY+K+  +VR A +  S+KPP+ F WDY L   N+YS +MF+V W+PF IV
Sbjct: 194 GLPTLTTIFLYVKLVIRVRHATRG-SYKPPIAFSWDYELAKANIYSCVMFVVFWLPFGIV 252

Query: 268 MSVASFRHQITPS-FYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFS 326
           + + SF+  I+P   Y LAW ALSKSC N+++YC+++RHFR+AY+ LFHYCCCKTTV+FS
Sbjct: 253 VCLNSFK-PISPRVLYNLAWFALSKSCFNNLIYCVADRHFRSAYVKLFHYCCCKTTVSFS 311

Query: 327 RRSRGDATRPSGDV--RVHIIPGYNMYSYTSPQRGRDASK 364
           RR+RG+  R + DV  RVHII  Y       P  GR   +
Sbjct: 312 RRTRGEGGRNTSDVRLRVHIIHSYASPGSCRPPVGRPNGR 351

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484578|ref|XP_003425076.1| PREDICTED: alpha-1B adrenergic receptor-like [Nasonia vitripennis]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/345 (46%), Positives = 223/345 (64%), Gaps = 16/345 (4%)

Query: 28  TVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADL 87
            + P TL  DW+RV RLL+   L+V+GSVGN +MIS+VM+EDHL++RGN ++   ALADL
Sbjct: 51  NISPVTLSSDWSRVVRLLMLASLAVVGSVGNVFMISAVMVEDHLKKRGNAFLVNVALADL 110

Query: 88  LVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 147
           L+SG+VIP SA++ILAG +++      +C  +W L  LC LVTV TLA IA+ENY+RLC 
Sbjct: 111 LISGMVIPASAILILAGHEES---PRGICSFEWTLEALCFLVTVLTLAAIAVENYMRLCW 167

Query: 148 PPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCS----KKVSYMELYQGII- 202
           P E Y   + S +  +++ +WL++     LQ   ++GP+ C+    K  +      GI+ 
Sbjct: 168 PIERYGILTTSRVTGAILSVWLIASTAVGLQTSLELGPNLCNINWRKPFTMTTNTTGIMS 227

Query: 203 GSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWI 262
            S+    P+  T ++Y+++  +VR + +  S+KP V F WDY L   NMYS+  F + W+
Sbjct: 228 ASIIVGAPMFFTILVYVRLIIRVRGSMRG-SYKPSVAFNWDYELTKANMYSFFFFGLFWM 286

Query: 263 PFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTT 322
           P  +   ++  R        YLAW ALSKSC N++LYC+++RHFR+AY+ LFHYCCCKTT
Sbjct: 287 PLGVAFCISVVRPVSPKIVVYLAWFALSKSCFNNLLYCVADRHFRSAYVKLFHYCCCKTT 346

Query: 323 VTFSRRSRGDATRPSGDV--RVHIIPGYNMYSYTSPQRGRDASKR 365
           V+FSRR+RGD  R SGDV  RVHII     +SY SP  GR A  R
Sbjct: 347 VSFSRRTRGDGGRSSGDVRLRVHII-----HSYASPASGRPAVAR 386

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294045|ref|XP_001688647.1| AGAP005356-PA [Anopheles gambiae str. PEST] gi|157015382|gb|EDO63653.1| AGAP005356-PA [Anopheles gambiae str. PEST]

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/335 (45%), Positives = 227/335 (67%), Gaps = 5/335 (1%)

Query: 29  VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
           V P TL  +W R+ARLL+   LSV+GS+GN +MISSVMIEDHL++ GN +I   ALADLL
Sbjct: 112 VSPVTLSTEWPRLARLLLLACLSVVGSIGNVFMISSVMIEDHLKKAGNAFIVNIALADLL 171

Query: 89  VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
           ++ VV+P S +++LAGI  ++     +C   WFL     LV++ TLAM+A+ENY+RLC  
Sbjct: 172 ITSVVMPASTIVLLAGIDNSD---TEVCKFHWFLAACSFLVSILTLAMMAVENYLRLCTF 228

Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMEL-YQGIIGSLFF 207
                +F+K++    +++IW V+ + + +QF+Y +  DYC+ +     + ++  +  L  
Sbjct: 229 QNERGWFNKTNTTAILLLIWAVACIASGMQFVYDIRFDYCNWRARQASIPHEAGVVGLIV 288

Query: 208 FIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIV 267
            +P+++T I +++I   V+     P+FKP + + WD SL  TN YS+++F+V W+PFC++
Sbjct: 289 LLPLLLTFITHIRIIVDVKRTMALPNFKPSLAYTWDLSLARTNFYSFLIFVVFWLPFCVI 348

Query: 268 MSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSR 327
            +  + R      FY   W+ LSKSC ++V+YC++NRHFR+AYI+LF+YCCCKTTV  SR
Sbjct: 349 FAYGTARLVSNRVFYTTVWIGLSKSCFHNVIYCLTNRHFRSAYISLFNYCCCKTTVAVSR 408

Query: 328 RSRGD-ATRPSGDVRVHIIPGYNMYSYTSPQRGRD 361
           R R D   RP+ DVRVHIIPGYNMYSYTSPQR  +
Sbjct: 409 RQRADGGNRPTADVRVHIIPGYNMYSYTSPQRSGN 443

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
ZFIN|ZDB-GENE-990415-154	347	mtnr1al "melatonin receptor ty	0.573	0.812	0.269	7.9e-19
UNIPROTKB|F1PK71	461	ADRA1B "Alpha-1B adrenergic re	0.461	0.492	0.255	2.4e-18
UNIPROTKB|J9PBA4	509	ADRA1B "Alpha-1B adrenergic re	0.461	0.445	0.255	3.6e-18
UNIPROTKB|P18841	515	ADRA1B "Alpha-1B adrenergic re	0.461	0.440	0.255	3.7e-18
UNIPROTKB|F1RR36	518	ADRA1B "Uncharacterized protei	0.461	0.438	0.255	3.8e-18
UNIPROTKB|P35368	520	ADRA1B "Alpha-1B adrenergic re	0.461	0.436	0.255	3.9e-18
RGD|2054	515	Adra1b "adrenoceptor alpha 1B"	0.414	0.396	0.254	2.8e-17
UNIPROTKB|F1NIZ5	376	ADRA1B "Uncharacterized protei	0.402	0.526	0.246	4.1e-17
RGD|2831	358	Hrh2 "histamine receptor H 2"	0.581	0.798	0.255	4.4e-17
UNIPROTKB|P25102	358	Hrh2 "Histamine H2 receptor" [	0.581	0.798	0.255	4.4e-17

ZFIN|ZDB-GENE-990415-154 mtnr1al "melatonin receptor type 1A like" [Danio rerio (taxid:7955)]

 Score = 244 (91.0 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 83/308 (26%), Positives = 145/308 (47%)

Query:    30 DPSTLPYDW--NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADL 87
             D   L + W    ++ +LITT   V+  +GN  +I SV     LR+ GN ++   A+ADL
Sbjct:    47 DIKYLSFPWVVTLLSSVLITT--IVVDVLGNLLVIVSVFRNRKLRKAGNAFVVSLAIADL 104

Query:    88 LVSGVVIPVSAVMILAGIKQAEPIK-EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC 146
             LV+  + P    ++L  I     I  +I C +  FL  L  + +++ +  IA+  Y  +C
Sbjct:   105 LVA--IYPYP--LVLTAIFHDRWIAGDIHCQISGFLMGLSVIGSIFNITGIAINRYCYIC 160

Query:   147 MPPECYTFFSKSHIILSVIMIWLVSIL-LTTLQFIYKVGPD----YCSKKVSYMELYQGI 201
                +    FS  + +  VI++W +++L +    F+  +  D     C+   S   LY  +
Sbjct:   161 HSLKYDKLFSNKNTVCYVILVWALTVLAIVPNWFVESLQYDPRVFSCTFAQSVSSLYTIM 220

Query:   202 IGSLFFFIPIIITCILYMKITYKVRLARQN--PSFKPPVIFGWDYSLMLTNMYSYIMFIV 259
             +  + F +PI I    Y++I   V   R+   P  +P  I   D+   LT    +++F V
Sbjct:   221 VVVVHFIVPIGIVTYCYLRIWILVIQVRRRVKPDSRPK-IKPHDFRNFLTMFVVFVLFAV 279

Query:   260 LWIPFCIV-MSVASFRH--QITPSFYYLA--WLALSKSCINSVLYCISNRHFRNAY---- 310
              W P   + ++VA      Q  P + + A  ++A   SC+N V+Y + N +FR  Y    
Sbjct:   280 CWAPLNFIGLAVAIHPRLGQSIPEWLFTASYFMAYFNSCLNGVIYGVLNHNFRKEYKRIV 339

Query:   311 INLFHYCC 318
             + +F + C
Sbjct:   340 LAIFKFNC 347

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0008502 "melatonin receptor activity" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PK71 ADRA1B "Alpha-1B adrenergic receptor" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 61/239 (25%), Positives = 114/239 (47%)

Query:     2 MTPDFSS-NNSLFPFTTELLTSAT---PMDTVDPSTLPY-DWNRVARLLITTGLSVLGS- 55
             M PD  + +N+  P     L +A    P  T   STLP  D  R   + +  G  +L + 
Sbjct:     1 MNPDLDAGHNTSAPAHWGELKNANFTGPNQTASNSTLPQLDITRAISVGLVLGAFILFAI 60

Query:    56 VGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115
             VGN  +I SV    HLR   N +I   A+ADLL+S  V+P SA + + G      +  I 
Sbjct:    61 VGNIVVILSVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSAALEVLGYWV---LGRIF 117

Query:   116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
             C +   + +LC   ++ +L  I+++ Y+ +    +  T  ++   IL+++ +W++S +++
Sbjct:   118 CDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLGVWVLSTVIS 177

Query:   176 TLQFI-YKVGPDYCSKKVSYMEL-YQGIIGSL-FFFIPIIITCILYMKITYKVRLARQN 231
                 + +K       K+    E  +  +  SL  F+IP+ +  ++Y ++    +   +N
Sbjct:   178 IGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

GO:0005886 "plasma membrane" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045819 "positive regulation of glycogen catabolic process" evidence=IEA

GO:0045818 "negative regulation of glycogen catabolic process" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

UNIPROTKB|J9PBA4 ADRA1B "Alpha-1B adrenergic receptor" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 61/239 (25%), Positives = 114/239 (47%)

Query:     2 MTPDFSS-NNSLFPFTTELLTSAT---PMDTVDPSTLPY-DWNRVARLLITTGLSVLGS- 55
             M PD  + +N+  P     L +A    P  T   STLP  D  R   + +  G  +L + 
Sbjct:     1 MNPDLDAGHNTSAPAHWGELKNANFTGPNQTASNSTLPQLDITRAISVGLVLGAFILFAI 60

Query:    56 VGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115
             VGN  +I SV    HLR   N +I   A+ADLL+S  V+P SA + + G      +  I 
Sbjct:    61 VGNIVVILSVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSAALEVLGYWV---LGRIF 117

Query:   116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
             C +   + +LC   ++ +L  I+++ Y+ +    +  T  ++   IL+++ +W++S +++
Sbjct:   118 CDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLGVWVLSTVIS 177

Query:   176 TLQFI-YKVGPDYCSKKVSYMEL-YQGIIGSL-FFFIPIIITCILYMKITYKVRLARQN 231
                 + +K       K+    E  +  +  SL  F+IP+ +  ++Y ++    +   +N
Sbjct:   178 IGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

UNIPROTKB|P18841 ADRA1B "Alpha-1B adrenergic receptor" [Mesocricetus auratus (taxid:10036)]

 Score = 180 (68.4 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
 Identities = 61/239 (25%), Positives = 113/239 (47%)

Query:     2 MTPDFSS-NNSLFPFTTELLTSAT---PMDTVDPSTLPY-DWNRVARLLITTGLSVLGS- 55
             M PD  + +N+  P     L  A    P  T   STLP  D  R   + +  G  +L + 
Sbjct:     1 MNPDLDTGHNTSAPAQWGELKDANFTGPNQTSSNSTLPQLDVTRAISVGLVLGAFILFAI 60

Query:    56 VGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115
             VGN  +I SV    HLR   N +I   A+ADLL+S  V+P SA + + G      +  I 
Sbjct:    61 VGNILVILSVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSATLEVLGYWV---LGRIF 117

Query:   116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
             C +   + +LC   ++ +L  I+++ Y+ +    +  T  ++   IL+++ +W++S +++
Sbjct:   118 CDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVWVLSTVIS 177

Query:   176 TLQFI-YKVGPDYCSKKVSYMEL-YQGIIGSL-FFFIPIIITCILYMKITYKVRLARQN 231
                 + +K       K+    E  +  +  SL  F+IP+ +  ++Y ++    +   +N
Sbjct:   178 IGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0043410 "positive regulation of MAPK cascade" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

UNIPROTKB|F1RR36 ADRA1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
 Identities = 61/239 (25%), Positives = 114/239 (47%)

Query:     2 MTPDFSS-NNSLFPFTTELLTSAT---PMDTVDPSTLPY-DWNRVARLLITTGLSVLGS- 55
             M PD  + +N+  P     L +A    P  T   STLP  D  R   + +  G  +L + 
Sbjct:     1 MNPDLDTGHNTSAPAHWGELKNANFTGPNQTSSNSTLPQLDITRAISVGLVLGAFILFAI 60

Query:    56 VGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115
             VGN  +I SV    HLR   N +I   A+ADLL+S  V+P SA + + G      +  I 
Sbjct:    61 VGNILVILSVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSAALEVLGYWV---LGRIF 117

Query:   116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
             C +   + +LC   ++ +L  I+++ Y+ +    +  T  ++   IL+++ +W++S +++
Sbjct:   118 CDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVWVLSTVIS 177

Query:   176 TLQFI-YKVGPDYCSKKVSYMEL-YQGIIGSL-FFFIPIIITCILYMKITYKVRLARQN 231
                 + +K       K+    E  +  +  SL  F+IP+ +  ++Y ++    +   +N
Sbjct:   178 IGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

GO:0005886 "plasma membrane" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045819 "positive regulation of glycogen catabolic process" evidence=IEA

GO:0045818 "negative regulation of glycogen catabolic process" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

UNIPROTKB|P35368 ADRA1B "Alpha-1B adrenergic receptor" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
 Identities = 61/239 (25%), Positives = 114/239 (47%)

Query:     2 MTPDFSS-NNSLFPFTTELLTSAT---PMDTVDPSTLPY-DWNRVARLLITTGLSVLGS- 55
             M PD  + +N+  P     L +A    P  T   STLP  D  R   + +  G  +L + 
Sbjct:     1 MNPDLDTGHNTSAPAHWGELKNANFTGPNQTSSNSTLPQLDITRAISVGLVLGAFILFAI 60

Query:    56 VGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115
             VGN  +I SV    HLR   N +I   A+ADLL+S  V+P SA + + G      +  I 
Sbjct:    61 VGNILVILSVACNRHLRTPTNYFIVNLAMADLLLSFTVLPFSAALEVLGYWV---LGRIF 117

Query:   116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
             C +   + +LC   ++ +L  I+++ Y+ +    +  T  ++   IL+++ +W++S +++
Sbjct:   118 CDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVWVLSTVIS 177

Query:   176 TLQFI-YKVGPDYCSKKVSYMEL-YQGIIGSL-FFFIPIIITCILYMKITYKVRLARQN 231
                 + +K       K+    E  +  +  SL  F+IP+ +  ++Y ++    +   +N
Sbjct:   178 IGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0045818 "negative regulation of glycogen catabolic process" evidence=IEA

GO:0045819 "positive regulation of glycogen catabolic process" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

RGD|2054 Adra1b "adrenoceptor alpha 1B" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 54/212 (25%), Positives = 103/212 (48%)

Query:    25 PMDTVDPSTLPY-DWNRVARLLITTGLSVLGS-VGNGYMISSVMIEDHLRRRGNTYIAVE 82
             P  T   STLP  D  R   + +  G  +L + VGN  +I SV    HLR   N +I   
Sbjct:    28 PNQTSSNSTLPQLDVTRAISVGLVLGAFILFAIVGNILVILSVACNRHLRTPTNYFIVNL 87

Query:    83 ALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY 142
             A+ADLL+S  V+P SA + + G      +  I C +   + +LC   ++ +L  I+++ Y
Sbjct:    88 AIADLLLSFTVLPFSATLEVLGYWV---LGRIFCDIWAAVDVLCCTASILSLCAISIDRY 144

Query:   143 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI-YKVGPDYCSKKVSYMEL-YQG 200
             + +    +  T  ++   IL+++ +W++S +++    + +K       K+    E  +  
Sbjct:   145 IGVRYSLQYPTLVTRRKAILALLSVWVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYA 204

Query:   201 IIGSL-FFFIPIIITCILYMKITYKVRLARQN 231
             +  SL  F+IP+ +  ++Y ++    +   +N
Sbjct:   205 LFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

GO:0001974 "blood vessel remodeling" evidence=ISO

GO:0001975 "response to amphetamine" evidence=ISO

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=ISO

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=ISO

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=ISO

GO:0004937 "alpha1-adrenergic receptor activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IDA

GO:0007512 "adult heart development" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0008542 "visual learning" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IMP

GO:0014704 "intercalated disc" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0016049 "cell growth" evidence=ISO

GO:0030315 "T-tubule" evidence=IDA

GO:0031965 "nuclear membrane" evidence=ISO;ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IMP

GO:0035265 "organ growth" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0043278 "response to morphine" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO;ISS

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0045818 "negative regulation of glycogen catabolic process" evidence=ISO

GO:0045819 "positive regulation of glycogen catabolic process" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO;ISS

GO:0048148 "behavioral response to cocaine" evidence=ISO

GO:0048545 "response to steroid hormone stimulus" evidence=IMP

GO:0071875 "adrenergic receptor signaling pathway" evidence=ISO

UNIPROTKB|F1NIZ5 ADRA1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
 Identities = 51/207 (24%), Positives = 104/207 (50%)

Query:    29 VDPSTLPYDWNRVARLLITTGLSVLGSV-GNGYMISSVMIEDHLRRRGNTYIAVEALADL 87
             +D  TL  D +R   + +  G  +L ++ GN  +I SV    HLR   N +I   A+ADL
Sbjct:    39 LDSPTL--DISRAITVGLILGAFILFAIIGNILVILSVACNRHLRIPTNYFIINLAIADL 96

Query:    88 LVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 147
             L+S  V+P SA + + G      +  I C +   + +LC   ++ +L  I+++ Y+ +  
Sbjct:    97 LLSFTVLPFSATLEILGYWV---LGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRY 153

Query:   148 PPECYTFFSKSHIILSVIMIWLVSILLTTLQFI-YKVGPDYCSKKVSYMEL-YQGIIGSL 205
               +  T  ++   IL+++ +W++S++++    + +K       K+    E  +  +  SL
Sbjct:   154 SLQYPTLVTRRRAILALLGVWVLSMVISIGPLLGWKEPAPKDDKECRITEEPFYALFSSL 213

Query:   206 -FFFIPIIITCILYMKITYKVRLARQN 231
               F+IP+I+  ++Y ++    +   +N
Sbjct:   214 GSFYIPLIVILVMYCRVYIVAKRTTKN 240

GO:0005886 "plasma membrane" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0045818 "negative regulation of glycogen catabolic process" evidence=IEA

GO:0045819 "positive regulation of glycogen catabolic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

RGD|2831 Hrh2 "histamine receptor H 2" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 80/313 (25%), Positives = 138/313 (44%)

Query:    25 PMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEAL 84
             P  TV    L     +V   ++ T L ++   GN  +  +V +   LR   N +I   A 
Sbjct:     3 PNGTVHSCCLDSMALKVTISVVLTTLILITIAGNVVVCLAVSLNRRLRSLTNCFIVSLAA 62

Query:    85 ADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVR 144
              DLL+  +V+P SA+  L+          + C++   L ++    ++  L MI+++ Y  
Sbjct:    63 TDLLLGLLVLPFSAIYQLSFTWS---FGHVFCNIYTSLDVMLCTASILNLFMISLDRYCA 119

Query:   145 LCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY--------KVGPDYCSKKVSYME 196
             +  P       +   + +S++ IW++SI L+ L            + G D    KV   E
Sbjct:   120 VTDPLRYPVLVTPVRVAISLVFIWVISITLSFLSIHLGWNSRNGTRGGNDTFKCKVQVNE 179

Query:   197 LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLM----LTNMY 252
             +Y  + G + F++P++I C+ Y +I +K+  AR+    +   I  W  + +     T   
Sbjct:   180 VYGLVDGLVTFYLPLLIMCVTYYRI-FKI--AREQAK-RINHISSWKAATIREHKATVTL 235

Query:   253 SYIM--FIVLWIPFCIVMSVASFRHQ--ITPSFYYLA-WLALSKSCINSVLYCISNRHFR 307
             + +M  FI+ W P+         R    I  +   +  WL  + S +N +LY   NR FR
Sbjct:   236 AAVMGAFIICWFPYFTAFVYRGLRGDDAINEAVEGIVLWLGYANSALNPILYAALNRDFR 295

Query:   308 NAYINLFHYCCCK 320
              AY  LFH   CK
Sbjct:   296 TAYQQLFH---CK 305

GO:0001696 "gastric acid secretion" evidence=IEA;ISO

GO:0001697 "histamine-induced gastric acid secretion" evidence=ISO

GO:0001698 "gastrin-induced gastric acid secretion" evidence=ISO

GO:0003382 "epithelial cell morphogenesis" evidence=ISO

GO:0004969 "histamine receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007613 "memory" evidence=ISO

GO:0008542 "visual learning" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030814 "regulation of cAMP metabolic process" evidence=IEA

GO:0045907 "positive regulation of vasoconstriction" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=ISO

GO:0048565 "digestive tract development" evidence=ISO

GO:0048732 "gland development" evidence=ISO

GO:0050804 "regulation of synaptic transmission" evidence=IEA

UNIPROTKB|P25102 Hrh2 "Histamine H2 receptor" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 80/313 (25%), Positives = 138/313 (44%)

Query:    25 PMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEAL 84
             P  TV    L     +V   ++ T L ++   GN  +  +V +   LR   N +I   A 
Sbjct:     3 PNGTVHSCCLDSMALKVTISVVLTTLILITIAGNVVVCLAVSLNRRLRSLTNCFIVSLAA 62

Query:    85 ADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVR 144
              DLL+  +V+P SA+  L+          + C++   L ++    ++  L MI+++ Y  
Sbjct:    63 TDLLLGLLVLPFSAIYQLSFTWS---FGHVFCNIYTSLDVMLCTASILNLFMISLDRYCA 119

Query:   145 LCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY--------KVGPDYCSKKVSYME 196
             +  P       +   + +S++ IW++SI L+ L            + G D    KV   E
Sbjct:   120 VTDPLRYPVLVTPVRVAISLVFIWVISITLSFLSIHLGWNSRNGTRGGNDTFKCKVQVNE 179

Query:   197 LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLM----LTNMY 252
             +Y  + G + F++P++I C+ Y +I +K+  AR+    +   I  W  + +     T   
Sbjct:   180 VYGLVDGLVTFYLPLLIMCVTYYRI-FKI--AREQAK-RINHISSWKAATIREHKATVTL 235

Query:   253 SYIM--FIVLWIPFCIVMSVASFRHQ--ITPSFYYLA-WLALSKSCINSVLYCISNRHFR 307
             + +M  FI+ W P+         R    I  +   +  WL  + S +N +LY   NR FR
Sbjct:   236 AAVMGAFIICWFPYFTAFVYRGLRGDDAINEAVEGIVLWLGYANSALNPILYAALNRDFR 295

Query:   308 NAYINLFHYCCCK 320
              AY  LFH   CK
Sbjct:   296 TAYQQLFH---CK 305

GO:0001696 "gastric acid secretion" evidence=IEA

GO:0004969 "histamine receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030814 "regulation of cAMP metabolic process" evidence=IEA

GO:0045907 "positive regulation of vasoconstriction" evidence=IEA

GO:0050804 "regulation of synaptic transmission" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	492
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	9e-18
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	3e-08
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	0.001

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 45/247 (18%), Positives = 101/247 (40%), Gaps = 20/247 (8%)

Query: 70  HLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLV 129
            LR   N ++   A+ADLL    + P +   ++ G     P  + +C +  FL ++    
Sbjct: 8   KLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDW---PFGDALCKLVGFLFVVNGYA 64

Query: 130 TVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY-------K 182
           ++  L  I+++ Y+ +  P       +     + ++++W++++LL+    ++       +
Sbjct: 65  SILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEE 124

Query: 183 VGPDYCS---KKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVI 239
                C     + S    Y  +   L F +P+++  + Y  I   +R   ++ + +    
Sbjct: 125 GNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAK 184

Query: 240 FGWDYSLMLTNMYSYIM--FIVLWIPFCIVMSVASFRHQITPSFYYLA-----WLALSKS 292
                      M   ++  F++ W+P+ IV+ + S            A     WLA   S
Sbjct: 185 RSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNS 244

Query: 293 CINSVLY 299
           C+N ++Y
Sbjct: 245 CLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 19/104 (18%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
           N ++   A+ADLL    + P +   ++ G     P  + +C +  FL ++    ++  L 
Sbjct: 14  NIFLLNLAVADLLFLLTLPPWALYYLVGGDW---PFGDALCKLVGFLFVVNGYASILLLT 70

Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482
            I+++ Y+ +  P       +     + ++++W++++LL+    
Sbjct: 71  AISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPL 114

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 36/191 (18%)

Query: 161 ILSVIMIWLVSILLTT-LQFIYKVGPDYCSKKVSYMELYQGIIGSLFF---------FIP 210
           +L  +  W+ S++L+     +Y V      K+  + + ++    S FF          IP
Sbjct: 142 VLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIP 201

Query: 211 IIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSV 270
           +II    Y KI Y ++  +     +   I           +      +V W+PF IV+ +
Sbjct: 202 LIILIYCYSKILYTLKNCKNKNKTRSIKII----------LTVVTFTVVFWVPFNIVLFI 251

Query: 271 ASFR------------HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318
            S +             +I  S      ++    C+N ++Y    ++F+  + N+F    
Sbjct: 252 NSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMF---- 307

Query: 319 CKTTVTFSRRS 329
           C+T   F R+S
Sbjct: 308 CRTNNIFIRQS 318

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG4219|consensus	423		100.0
PHA03234	338	DNA packaging protein UL33; Provisional	100.0
PHA03235	409	DNA packaging protein UL33; Provisional	100.0
KOG4220|consensus	503		100.0
PHA02638	417	CC chemokine receptor-like protein; Provisional	100.0
PHA02834	323	chemokine receptor-like protein; Provisional	100.0
PHA03087	335	G protein-coupled chemokine receptor-like protein;	100.0
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.97
KOG2087|consensus	363		99.9
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.9
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.83
KOG4219|consensus	423		99.77
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.77
KOG4220|consensus	503		99.71
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.69
PHA03234	338	DNA packaging protein UL33; Provisional	99.62
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	99.58
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	99.55
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	99.54
PHA02834	323	chemokine receptor-like protein; Provisional	99.54
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.52
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.51
PHA03235	409	DNA packaging protein UL33; Provisional	99.44
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.42
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	99.19
KOG2087|consensus	363		99.14
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	99.06
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.86
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	98.83
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	98.77
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	98.73
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	98.72
KOG4193|consensus	610		98.65
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	98.65
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.62
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	98.59
KOG4564|consensus	473		98.42
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	98.37
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	98.36
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	98.35
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	98.24
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	98.07
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	97.95
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	97.93
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.4
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.39
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.34
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	97.11
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	96.62
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	96.25
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	95.74
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	95.58
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	94.95
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	94.9
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	94.64
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	94.5
KOG4289|consensus	2531		90.7
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	82.34
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	81.99

>KOG4219|consensus

Probab=100.00  E-value=6e-43  Score=322.51  Aligned_cols=281  Identities=20%  Similarity=0.382  Sum_probs=238.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccc
Q psy11022         33 TLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIK  112 (492)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~  112 (492)
                      ...+.+...+.++++.++.+++++||+++++++..+|++|+.+|+|++|||+||++++++..++.......+   +|.+|
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~---~W~~G  104 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ---EWYFG  104 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccccc
Confidence            345667788899999999999999999999999999999999999999999999999999999988877775   59999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc---------
Q psy11022        113 EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV---------  183 (492)
Q Consensus       113 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~---------  183 (492)
                      .+.|++..|+......+|++++++||+|||.||.||++.+  .++|.++..++++|+.++++++|..++..         
T Consensus       105 ~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~  182 (423)
T KOG4219|consen  105 SFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDG  182 (423)
T ss_pred             cceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCC
Confidence            9999999999999999999999999999999999997654  89999999999999999999999877421         


Q ss_pred             -cccccccccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CcccchhhHHHHH
Q psy11022        184 -GPDYCSKKVSYM-----------ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKP--PVIFGWDYSLMLT  249 (492)
Q Consensus       184 -~~~~C~~~~~~~-----------~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~--~~~~~~~~~~~~~  249 (492)
                       ....|...++..           ..|.....++.+++|++++...|.+|.+++++.+..+.+..  .++.+.++|+.|+
T Consensus       183 ~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkm  262 (423)
T KOG4219|consen  183 ESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKM  262 (423)
T ss_pred             cceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHH
Confidence             122344443221           22666677899999999999999999999998764333222  3445668899999


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHhccCC------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022        250 NMYSYIMFIVLWIPFCIVMSVASFRHQ------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC  318 (492)
Q Consensus       250 ~~~~~~~f~i~~~P~~i~~~~~~~~~~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~  318 (492)
                      ++++++.|.+||+|+.+..++....+.      ...++....||++.|++.||+||++.|++||..+++.|++|.
T Consensus       263 liiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  263 LIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            999999999999999999998876332      334445567999999999999999999999999999998664

>PHA03234 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=4.1e-40  Score=317.58  Aligned_cols=263  Identities=12%  Similarity=0.109  Sum_probs=204.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcceeeeee--eeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccccc
Q psy11022         38 WNRVARLLITTGLSVLGSVGNGYMISSV--MIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM  115 (492)
Q Consensus        38 ~~~~~~~~~~~~~~i~gl~gN~~vi~~i--~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~  115 (492)
                      ..+.....++.+++++|++||+++++++  .+++++|+++|+|+.|||++|++.+ +.+|.......    ..|.+|+..
T Consensus        30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~-l~lp~~~~~~~----~~w~fG~~l  104 (338)
T PHA03234         30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHM-LCVFFLTLNRE----ALFNFNQAF  104 (338)
T ss_pred             HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHh----CCccCchhH
Confidence            4677889999999999999999999854  4566778999999999999999998 45666554322    248999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc------cccccc
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV------GPDYCS  189 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~~~~C~  189 (492)
                      |++..++......+|++++++||+|||+||++|.+++.  ++++....+++.|+.+++.++|.+.+..      +...|.
T Consensus       105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~  182 (338)
T PHA03234        105 CQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCN  182 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCc
Confidence            99999999999999999999999999999999976542  3344445566679999999999876421      114687


Q ss_pred             cccccchhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHh
Q psy11022        190 KKVSYMELYQGI------IGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIP  263 (492)
Q Consensus       190 ~~~~~~~~~~~~------~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P  263 (492)
                      ..++....+...      ...+.+++|++++.+||.+|.+++++.+          .++++|++|++++++++|++||+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~----------~~~~~k~~k~i~~vv~vF~iCWlP  252 (338)
T PHA03234        183 IHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT----------EKKHKKTLFFIRILILSFLCIQIP  252 (338)
T ss_pred             ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHhH
Confidence            765432222221      1223468999999999999999987642          134678999999999999999999


Q ss_pred             HHHHHHHHhcc----C--C-----cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccc
Q psy11022        264 FCIVMSVASFR----H--Q-----ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYC  317 (492)
Q Consensus       264 ~~i~~~~~~~~----~--~-----~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~  317 (492)
                      +.+..++....    .  .     ......+..+++++||++||+||++.+++||+++++++++.
T Consensus       253 y~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~  317 (338)
T PHA03234        253 NIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF  317 (338)
T ss_pred             HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            99987654331    0  0     11224456689999999999999999999999999988653

>PHA03235 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=2.5e-38  Score=311.78  Aligned_cols=265  Identities=14%  Similarity=0.166  Sum_probs=205.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhcceeeeeeee-cccc-ccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc
Q psy11022         37 DWNRVARLLITTGLSVLGSVGNGYMISSVMI-EDHL-RRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI  114 (492)
Q Consensus        37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~-~~~l-r~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~  114 (492)
                      +..+....+++.+++++|++||+++++++.+ +|.. ++.+++|+.|||++|++.. +.+|+.+..   .. ..|..|+.
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~---~~-~~~~~g~~  103 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS---NQ-GLLSGSVA  103 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh---cC-ccccCCCC
Confidence            4467789999999999999999999987543 3332 3566899999999999874 788877643   11 12445578


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----------
Q psy11022        115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----------  183 (492)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----------  183 (492)
                      .|++..++...+..+|++++++||+|||++|++|.+ .+..+++++...++++|+.+++.++|+..+..           
T Consensus       104 ~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~-~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~  182 (409)
T PHA03235        104 GCKFASLLYYASCTVGFATVALIAADRYRVIHQRTR-ARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEA  182 (409)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhh-ccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCC
Confidence            999999999999999999999999999999999964 44456888999999999999999998654321           


Q ss_pred             -cccccccccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q psy11022        184 -GPDYCSKKVSYME------LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIM  256 (492)
Q Consensus       184 -~~~~C~~~~~~~~------~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (492)
                       +...|...+....      .|.....++.+++|+++++++|.+|++++++++++          +++|..+++.++++.
T Consensus       183 ~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~----------~~~k~~~~v~iivv~  252 (409)
T PHA03235        183 PGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK----------KRSRTLTFVCILLLS  252 (409)
T ss_pred             CCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------cchhhhhhHHHHHHH
Confidence             1235865433221      23344556778999999999999999999886431          234667888888999


Q ss_pred             HHHHhHhHHHHHHHHhccC-----------CcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccc
Q psy11022        257 FIVLWIPFCIVMSVASFRH-----------QITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYC  317 (492)
Q Consensus       257 f~i~~~P~~i~~~~~~~~~-----------~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~  317 (492)
                      |++||+|+.+..++..+..           .......+..++.++|+++||+||++.+++||+++++.++.+
T Consensus       253 F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~  324 (409)
T PHA03235        253 FLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE  324 (409)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence            9999999999888754311           112334566789999999999999999999999999998653

>KOG4220|consensus

Probab=100.00  E-value=1.7e-38  Score=291.88  Aligned_cols=280  Identities=21%  Similarity=0.344  Sum_probs=243.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccc
Q psy11022         33 TLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIK  112 (492)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~  112 (492)
                      .....+.-+.++++...++++.++||++|++.+..+|+|++..|+|+++||+||++.+.+.+|.+....+.+.   |++|
T Consensus        23 ~~~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~---W~LG   99 (503)
T KOG4220|consen   23 TRYETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGY---WPLG   99 (503)
T ss_pred             CCccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcc---cccc
Confidence            3444555667888899999999999999999999999999999999999999999999999999999999885   9999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--------cc
Q psy11022        113 EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--------VG  184 (492)
Q Consensus       113 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--------~~  184 (492)
                      ...|.+...+-+....+|++.++.|++|||+.|.+|+.|+.++|.+++...|+++|++|+++-.|.+++.        ..
T Consensus       100 ~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~  179 (503)
T KOG4220|consen  100 PLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVP  179 (503)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecC
Confidence            9999999999999999999999999999999999999999999999999999999999999998877643        24


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------------------------
Q psy11022        185 PDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQN---------------------------------  231 (492)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~---------------------------------  231 (492)
                      .+.|..+.-.......-..+..|.+|..+|++.|.+|++..+++.++                                 
T Consensus       180 ~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p  259 (503)
T KOG4220|consen  180 DGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSP  259 (503)
T ss_pred             CCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCC
Confidence            56798875444555566667889999999999999999999875421                                 


Q ss_pred             ------------------------------------------------------------------C-------------
Q psy11022        232 ------------------------------------------------------------------P-------------  232 (492)
Q Consensus       232 ------------------------------------------------------------------~-------------  232 (492)
                                                                                        .             
T Consensus       260 ~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~  339 (503)
T KOG4220|consen  260 SEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNT  339 (503)
T ss_pred             ccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCcccccc
Confidence                                                                              0             


Q ss_pred             ------CC------------------------------CC--------------------------CcccchhhHHHHHH
Q psy11022        233 ------SF------------------------------KP--------------------------PVIFGWDYSLMLTN  250 (492)
Q Consensus       233 ------~~------------------------------~~--------------------------~~~~~~~~~~~~~~  250 (492)
                            .+                              ++                          +....+|+|++|++
T Consensus       340 ~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTL  419 (503)
T KOG4220|consen  340 LIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTL  419 (503)
T ss_pred             ccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHH
Confidence                  00                              00                          00013578999999


Q ss_pred             HHHHHHHHHHhHhHHHHHHHHhc--cCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        251 MYSYIMFIVLWIPFCIVMSVASF--RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       251 ~~~~~~f~i~~~P~~i~~~~~~~--~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ..+.+.|+++|.||.|+.++..+  ...+..+..+..||-|+||.+||+.|.+.|+.||+.+++++.
T Consensus       420 sAILlAFIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~  486 (503)
T KOG4220|consen  420 SAILLAFILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLL  486 (503)
T ss_pred             HHHHHHHHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhe
Confidence            99999999999999999999988  556778888889999999999999999999999999999995

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=100.00  E-value=6.7e-36  Score=295.95  Aligned_cols=264  Identities=19%  Similarity=0.322  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchh
Q psy11022         39 NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHV  118 (492)
Q Consensus        39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~  118 (492)
                      ......+++.+++++|++||+++++++. +|++|+++|++++|||++|++.. +.+|+.+.....    .|.+|+..|++
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~~~----~W~fg~~~Ck~  170 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFV-IDFPFIIYNEFD----QWIFGDFMCKV  170 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHhc----cccccccchhh
Confidence            4567788899999999999999997664 58889999999999999999886 688987765432    48999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----------c---
Q psy11022        119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----------G---  184 (492)
Q Consensus       119 ~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----------~---  184 (492)
                      ..++...+..++++.++++++|||+||++|.++++..+++.....++++|+.+++.++|++.+..           +   
T Consensus       171 ~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~  250 (417)
T PHA02638        171 ISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETI  250 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCc
Confidence            99999999999999999999999999999998877778888888899999999999999876421           1   


Q ss_pred             -ccccccccccch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHH
Q psy11022        185 -PDYCSKKVSYME--------LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYI  255 (492)
Q Consensus       185 -~~~C~~~~~~~~--------~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (492)
                       ...|....+...        .+.....++.+++|++++++||.+|+++++|.++          ++++|..|+++.+++
T Consensus       251 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~----------~~k~k~~rli~~ivi  320 (417)
T PHA02638        251 SNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK----------SKKTKSIIIVSIIII  320 (417)
T ss_pred             cCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cccchhhhhHHHHHH
Confidence             225765432211        1122234567899999999999999999987532          224567899999999


Q ss_pred             HHHHHhHhHHHHHHHHhccC----------C------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022        256 MFIVLWIPFCIVMSVASFRH----------Q------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC  318 (492)
Q Consensus       256 ~f~i~~~P~~i~~~~~~~~~----------~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~  318 (492)
                      .|++||+|+.+..++.....          .      ......+...++++|+++||+||++.+++||+++++++++..
T Consensus       321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~  399 (417)
T PHA02638        321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF  399 (417)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence            99999999999888765421          0      112234566889999999999999999999999999885443

>PHA02834 chemokine receptor-like protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=291.47  Aligned_cols=260  Identities=18%  Similarity=0.301  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchh
Q psy11022         39 NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHV  118 (492)
Q Consensus        39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~  118 (492)
                      .+....+++.+++++|++||+++++++.++|+ +++.|+|+.|||++|++. .+.+|+.+.....    .|.+|+..|++
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~~----~w~~g~~~C~~  100 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDLN----EWIFGEFMCKL  100 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHcC----CcCCcchHHHh
Confidence            35677899999999999999999998877555 457899999999999986 4688887654432    48999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----cccccccccc
Q psy11022        119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYCSKKVS  193 (492)
Q Consensus       119 ~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C~~~~~  193 (492)
                      ..++...+..+|++++++||+|||++|++|++++. .+.+++...++.+|+.+++.++|+.....     +...|.....
T Consensus       101 ~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~  179 (323)
T PHA02834        101 VLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDY  179 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCC
Confidence            99999999999999999999999999999987644 45567777888999999999998865321     2235863322


Q ss_pred             c-chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHH
Q psy11022        194 Y-MEL----YQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM  268 (492)
Q Consensus       194 ~-~~~----~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~  268 (492)
                      . ...    +.....+..+++|++++.++|.+|.+++|++++          ++++|..|+++++++.|++||+|+.+..
T Consensus       180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~----------~~~~k~~k~~~~vv~~F~icWlPy~i~~  249 (323)
T PHA02834        180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN----------KNKTRSIKIILTVVTFTVVFWVPFNIVL  249 (323)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------cccceEEeehhHHHHHHHHHHhhHHHHH
Confidence            1 111    112234578899999999999999999987532          1245678899999999999999999988


Q ss_pred             HHHhccCC-----c----ch---HHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        269 SVASFRHQ-----I----TP---SFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       269 ~~~~~~~~-----~----~~---~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ++..+.+.     .    ..   ...+..+++++||++||+||++.|++||++++++++
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~  308 (323)
T PHA02834        250 FINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFC  308 (323)
T ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHH
Confidence            76544110     0    11   123556899999999999999999999999999884

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=275.08  Aligned_cols=265  Identities=18%  Similarity=0.284  Sum_probs=212.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022         37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC  116 (492)
Q Consensus        37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  116 (492)
                      +........++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.+ +..|.........   .|.+|+..|
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~---~~~~~~~~C  111 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILF---QWSFGEFAC  111 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCC---CCCCCcHHH
Confidence            33567888899999999999999999998877 889999999999999999887 4566655333222   478899999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-----ccccccccc
Q psy11022        117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-----VGPDYCSKK  191 (492)
Q Consensus       117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-----~~~~~C~~~  191 (492)
                      +...++......+|++++++||+|||++|++|++|+...+.+++..+++++|+.+++.++|+....     .+...|...
T Consensus       112 ~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~  191 (335)
T PHA03087        112 KIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMF  191 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEec
Confidence            999999999999999999999999999999999998899999999999999999999998876642     223456555


Q ss_pred             cccc-hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHH
Q psy11022        192 VSYM-ELY----QGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCI  266 (492)
Q Consensus       192 ~~~~-~~~----~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i  266 (492)
                      ++.. ..+    ......+.+++|.++++++|.++.++++++++         .++++|..|++..++++|++||.|+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~---------~~~~~k~~k~l~~iv~~f~i~w~P~~i  262 (335)
T PHA03087        192 YNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK---------SKKNKKAIKLVLIIVILFVIFWLPFNV  262 (335)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------chhcchHHHhHHHHHHHHHHHHHHHHH
Confidence            4321 111    11234567899999999999999998887642         234568899999999999999999998


Q ss_pred             HHHHHhc-----cCC------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        267 VMSVASF-----RHQ------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       267 ~~~~~~~-----~~~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ..++...     .+.      ......+..++..+|+++||+||++++++||+++++.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~  322 (335)
T PHA03087        263 SVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLK  322 (335)
T ss_pred             HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHH
Confidence            7766533     110      112233456788899999999999999999999999885

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.97  E-value=5.5e-31  Score=246.59  Aligned_cols=240  Identities=24%  Similarity=0.458  Sum_probs=207.0

Q ss_pred             hcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q psy11022         57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAM  136 (492)
Q Consensus        57 gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~  136 (492)
                      ||+++++++.++|++|++.+++++|||++|++.++...|........+   .|..++..|++..++.......+.+++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~~~~   77 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD---DWIFSSFLCRIFGFLFYFSSFSSIFSLVA   77 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS---SCTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence            899999999999999999999999999999999988888887776663   47889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc----c---ccccccccccc--hhHHHHHHHHHH
Q psy11022        137 IAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV----G---PDYCSKKVSYM--ELYQGIIGSLFF  207 (492)
Q Consensus       137 ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~----~---~~~C~~~~~~~--~~~~~~~~~~~~  207 (492)
                      +++|||++|++|.+|++..+++++...++++|+.+++.++|+.....    .   ...|....+..  ..+......+.+
T Consensus        78 is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~  157 (257)
T PF00001_consen   78 ISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFF  157 (257)
T ss_dssp             HHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999866421    1   24688776554  367777788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCC----CCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCc----ch
Q psy11022        208 FIPIIITCILYMKITYKVRLARQNPSFK----PPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQI----TP  279 (492)
Q Consensus       208 ~ip~~ii~~~y~~i~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~----~~  279 (492)
                      ++|++++.++|.++++++||++++.++.    .+++.++|+|.++++..++++|++||+|+.+..++....+..    ..
T Consensus       158 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~  237 (257)
T PF00001_consen  158 ILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSI  237 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHH
T ss_pred             ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHH
Confidence            9999999999999999999988765442    244567789999999999999999999999999888874333    45


Q ss_pred             HHHHHHHHHhhcccccchhh
Q psy11022        280 SFYYLAWLALSKSCINSVLY  299 (492)
Q Consensus       280 ~~~~~~~l~~~~s~~nP~IY  299 (492)
                      ......++.++|+++||+||
T Consensus       238 ~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  238 LFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCcEEC
Confidence            56667789999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=99.90  E-value=7.3e-24  Score=194.51  Aligned_cols=270  Identities=17%  Similarity=0.219  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCC-C---ccccccccch
Q psy11022         42 ARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIK-Q---AEPIKEIMCH  117 (492)
Q Consensus        42 ~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~-~---~~~~~~~~C~  117 (492)
                      ++-+..-+++.++++||.+|+......|...++...+++|||.+|+++++-.........-.... .   .|-.+...|+
T Consensus        26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~  105 (363)
T KOG2087|consen   26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCP  105 (363)
T ss_pred             eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCc
Confidence            44556667889999999999999988888778889999999999999994322222222111110 0   2333567799


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc---ccccccccc--
Q psy11022        118 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV---GPDYCSKKV--  192 (492)
Q Consensus       118 ~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~---~~~~C~~~~--  192 (492)
                      +.+|+..+....|+++++.+++||++.|++|++-.+....|....+.+..|+.+++.++.|.+...   ..+.|.+-.  
T Consensus       106 ~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~~vClPL~~~  185 (363)
T KOG2087|consen  106 VAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGASSVCLPLHIE  185 (363)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcccceeeecccC
Confidence            999999999999999999999999999999998888777777999999999999999988876543   235677652  


Q ss_pred             ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022        193 SYMEL-YQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA  271 (492)
Q Consensus       193 ~~~~~-~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~  271 (492)
                      +.... +.....+....+.++++.++|++++..++|...+...+.       .+.+|-+..++.+-.+||.|..+..+..
T Consensus       186 ~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~~-------~~~akr~a~LvfTd~icw~Pi~f~~~~a  258 (363)
T KOG2087|consen  186 EPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLIS-------TSVAKRMAFLVFTDCICWCPIAFFKFSA  258 (363)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccch-------hhhhhCeeEEEEccccccCchheeeeHH
Confidence            22233 677777888999999999999999999888644332221       4567777888889999999998887776


Q ss_pred             hccCCcchHHH---HHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022        272 SFRHQITPSFY---YLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC  318 (492)
Q Consensus       272 ~~~~~~~~~~~---~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~  318 (492)
                      ..+.......+   +..+..-+|+++||++|.+.++.||+.++.+..+..
T Consensus       259 l~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~  308 (363)
T KOG2087|consen  259 LIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVG  308 (363)
T ss_pred             hcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcc
Confidence            66332222221   222333489999999999999999999999886653

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.90  E-value=1.9e-23  Score=194.14  Aligned_cols=250  Identities=19%  Similarity=0.280  Sum_probs=189.8

Q ss_pred             HHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHH
Q psy11022         52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV  131 (492)
Q Consensus        52 i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~  131 (492)
                      ++|++||..++.++.++|++|+|.+++++.+|++|++.+...+|...... .+    ....+..|..+.+...++...+.
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~-~~----~~i~~~~Cf~~~~~~~f~~~~qs   76 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF-RD----HQITRSECFWQIFFYIFFQCAQS   76 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH-hh----eeccHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999988888776433 22    24456679999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc--cccccccccccchhHHHHHHHHHHHH
Q psy11022        132 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV--GPDYCSKKVSYMELYQGIIGSLFFFI  209 (492)
Q Consensus       132 ~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~~~~~~~~i  209 (492)
                      ..+++|++||++||+.|++|++..+.+..........+.+.......+...+  ....|.+.................++
T Consensus        77 ~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~~~~i  156 (257)
T PF10320_consen   77 VIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYRDDETIVICNPPLAFHGTASQIWSYSNIII  156 (257)
T ss_pred             HHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEecCCcccccCCCccccCccHHHHHHHHHHHH
Confidence            9999999999999999999999988887777667777777766555544433  35679887544333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcc----hHHHHHH
Q psy11022        210 PIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQIT----PSFYYLA  285 (492)
Q Consensus       210 p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~----~~~~~~~  285 (492)
                       -++.++.|.......++++++       ..++++|..|.+...++.|+..|.-..+...+....+...    .......
T Consensus       157 -nv~tvivY~i~~~~~~~k~~~-------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~  228 (257)
T PF10320_consen  157 -NVITVIVYIITIIIFKRKSRS-------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAG  228 (257)
T ss_pred             -HHHHHHHHHHHHHHHHHHccc-------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence             344566777777777775443       3455788999999999999999987776666555422222    2334456


Q ss_pred             HHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022        286 WLALSKSCINSVLYCISNRHFRNAYINLF  314 (492)
Q Consensus       286 ~l~~~~s~~nP~IY~~~~~~~R~~~~~~~  314 (492)
                      ++...+.+.|.++|.++|+|+|+++++++
T Consensus       229 i~v~~~~s~~ffV~~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  229 IFVNISYSQNFFVYYWRSSEYRKAFRELF  257 (257)
T ss_pred             HHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence            78889999999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.83  E-value=1.7e-19  Score=174.49  Aligned_cols=266  Identities=18%  Similarity=0.237  Sum_probs=198.1

Q ss_pred             HHHHHHhhhcceeeeeeeecccccc-chhhHHHHHHHHHHHhhhchhcHHHHHHHhcC--CC----ccccccccchhhHH
Q psy11022         49 GLSVLGSVGNGYMISSVMIEDHLRR-RGNTYIAVEALADLLVSGVVIPVSAVMILAGI--KQ----AEPIKEIMCHVQWF  121 (492)
Q Consensus        49 ~~~i~gl~gN~~vi~~i~~~~~lr~-~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~--~~----~~~~~~~~C~~~~~  121 (492)
                      +++++|+++|.+.++++ .+|++|+ +.|.++..+|++|++..+..++..........  ..    ..........+...
T Consensus         5 ~~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~   83 (318)
T PF10324_consen    5 ILSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES   83 (318)
T ss_pred             EEeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence            35689999999999666 5688887 88999999999999999888888776655442  11    11111122344457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cccchhhHHhHhhHHHHHHHHHhhhhhhhc---------cccccccc
Q psy11022        122 LTLLCSLVTVWTLAMIAMENYVRLCMPPECY--TFFSKSHIILSVIMIWLVSILLTTLQFIYK---------VGPDYCSK  190 (492)
Q Consensus       122 ~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~--~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~---------~~~~~C~~  190 (492)
                      +...+...|.|..++||+.|++++.+|+..+  +..+++.+...+.++++++.+++.+.+...         ...+.|..
T Consensus        84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~  163 (318)
T PF10324_consen   84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG  163 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence            7788899999999999999999999997653  355677788888888899988888876521         12345862


Q ss_pred             cc-----cc------------c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHH
Q psy11022        191 KV-----SY------------M----ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLT  249 (492)
Q Consensus       191 ~~-----~~------------~----~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  249 (492)
                      ..     +.            .    ..+....+++.-++|.++..+....+.+++||.++++++..+++.+++.+.+++
T Consensus       164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~tt~l  243 (318)
T PF10324_consen  164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSKSKKSDRTTKL  243 (318)
T ss_pred             ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccccccccchHHH
Confidence            11     00            0    112222233457899999999999999999998766555443335567789999


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHhccCC-------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        250 NMYSYIMFIVLWIPFCIVMSVASFRHQ-------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       250 ~~~~~~~f~i~~~P~~i~~~~~~~~~~-------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      +..+++.|+++-+|..+..++......       ......+...+..+|+..|++||..++.+||+++|++++
T Consensus       244 i~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~  316 (318)
T PF10324_consen  244 ILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFG  316 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhc
Confidence            999999999999999999998775211       123344556788899999999999999999999999995

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>KOG4219|consensus

Probab=99.77  E-value=1.8e-19  Score=167.52  Aligned_cols=111  Identities=21%  Similarity=0.285  Sum_probs=104.6

Q ss_pred             CCcccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceee
Q psy11022        368 SPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVR  447 (492)
Q Consensus       368 ~~~~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~a  447 (492)
                      ...+.++|+.+|+++.|||+||++++++..|+......+.   .|.+|..+|++..|+......+|+++|+|||+|||+|
T Consensus        60 il~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~---~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~A  136 (423)
T KOG4219|consen   60 ILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ---EWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMA  136 (423)
T ss_pred             EeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccccccceeeeccccchhhhhHhHHHHHHHHHHHHHH
Confidence            3466789999999999999999999999999999988888   8999999999999999999999999999999999999


Q ss_pred             eeccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        448 LCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       448 i~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      |.||++.+  .+++.+++.++.+|++|+++++|...
T Consensus       137 Ii~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l  170 (423)
T KOG4219|consen  137 IIHPLQPR--PSRRSSKIIILLIWALALLLALPQLL  170 (423)
T ss_pred             HhhhcccC--CCCcceeehhHHHHHHHHHHhcccee
Confidence            99999844  89999999999999999999999884

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.77  E-value=9.5e-18  Score=158.29  Aligned_cols=260  Identities=16%  Similarity=0.218  Sum_probs=189.7

Q ss_pred             HHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc-cchhhHHHHHHHH
Q psy11022         49 GLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI-MCHVQWFLTLLCS  127 (492)
Q Consensus        49 ~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~  127 (492)
                      +++++|++.|.+++..+.+.|++|++.+.+..+.|++|.+.++..+....+....+...   ..+. .-.+.+.....++
T Consensus         2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~---~~~~~~s~~~g~~~~~~y   78 (274)
T PF10328_consen    2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISF---LPSSLNSIIFGFIGMFCY   78 (274)
T ss_pred             eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CchHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999986666666666555422   1221 3445588889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-ccccc-----ccc-c-cccchhHH
Q psy11022        128 LVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-VGPDY-----CSK-K-VSYMELYQ  199 (492)
Q Consensus       128 ~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-~~~~~-----C~~-~-~~~~~~~~  199 (492)
                      ..+.++..+||++|++||..|.+|++..+.+.+..++++.|++++....+..... +...+     -.. . .+....+.
T Consensus        79 ~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~  158 (274)
T PF10328_consen   79 FIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYS  158 (274)
T ss_pred             HHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhh
Confidence            9999999999999999999999999999999999999999999997765554421 11100     000 0 01122333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCC
Q psy11022        200 GIIGSLFFFIPIIITCILYMKITYKVRLARQNP---SFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ  276 (492)
Q Consensus       200 ~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~  276 (492)
                      .........+-.+++.+++..++.++++.+++.   .++.++++++|.+..++....-..+++.+.-+.....+   .+.
T Consensus       159 ~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~~  235 (274)
T PF10328_consen  159 WYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SSN  235 (274)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc
Confidence            334444555556667777777777777665543   34455667778899999999999999988777655433   223


Q ss_pred             cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022        277 ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLF  314 (492)
Q Consensus       277 ~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~  314 (492)
                      ....+..........+++|++|+...|+|+|+.+++..
T Consensus       236 ~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~  273 (274)
T PF10328_consen  236 RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK  273 (274)
T ss_pred             cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence            33333344444667788999999999999999998753

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>KOG4220|consensus

Probab=99.71  E-value=7e-18  Score=156.44  Aligned_cols=112  Identities=18%  Similarity=0.280  Sum_probs=106.0

Q ss_pred             CcccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeee
Q psy11022        369 PYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRL  448 (492)
Q Consensus       369 ~~~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai  448 (492)
                      .-+..+++..|+|+.+||+||+..|++.+|........|   .|+.|...|.++..++....-+|+++|..||+|||..|
T Consensus        56 KvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg---~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsV  132 (503)
T KOG4220|consen   56 KVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMG---YWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSV  132 (503)
T ss_pred             EecceeeeecceeehHHHHhhhhhheeechHHHHHHHHc---ccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceee
Confidence            345688999999999999999999999999999999999   89999999999999999999999999999999999999


Q ss_pred             eccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        449 CMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       449 ~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      .+||.|+...|++++..||+++|++|+++..|-..
T Consensus       133 TrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl  167 (503)
T KOG4220|consen  133 TRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAIL  167 (503)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876553

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.69  E-value=8.4e-17  Score=151.62  Aligned_cols=262  Identities=13%  Similarity=0.192  Sum_probs=176.2

Q ss_pred             HHhhhcceeeeeeeeccc----cccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCC-ccccccccchhhHHHHHHHH
Q psy11022         53 LGSVGNGYMISSVMIEDH----LRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ-AEPIKEIMCHVQWFLTLLCS  127 (492)
Q Consensus        53 ~gl~gN~~vi~~i~~~~~----lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~  127 (492)
                      +.+.-...++.++.+.|+    ++++.+.++.+.+++|++..+...............+ ....++..-++.........
T Consensus         7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~   86 (283)
T PF10323_consen    7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL   86 (283)
T ss_pred             ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            344445555555555443    5678899999999999998865444433333211111 11223333556666777778


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCc-ccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----cccccccccccchhHHHH
Q psy11022        128 LVTVWTLAMIAMENYVRLCMPP-ECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYCSKKVSYMELYQGI  201 (492)
Q Consensus       128 ~~s~~~l~~ia~dRy~aI~~P~-~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~  201 (492)
                      .......+++|++||.||++|. ++.+..++.+.+.++++-|+.++++++|.+...+     .+..=....+........
T Consensus        87 ~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~~~~~d~~~~~~~~~  166 (283)
T PF10323_consen   87 YIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENMSLFVDPEFIQRNFL  166 (283)
T ss_pred             HHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccceeeecCHHHHHHHHH
Confidence            8899999999999999999998 7777889999999999999999999988543211     111000001111223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHH
Q psy11022        202 IGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF  281 (492)
Q Consensus       202 ~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~  281 (492)
                      .......+..+..+++|..+...+||+.++..++.+++.++|.+.+.+..+...++++...-+......... .......
T Consensus       167 ~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~~~~-~~~~~~~  245 (283)
T PF10323_consen  167 IAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYFAQN-FNTDPIF  245 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHH
Confidence            444666677888899999999999988765555566777888888888877777666655444433333332 2222122


Q ss_pred             H---HHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        282 Y---YLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       282 ~---~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      +   ....+....|.+||+.-.+.|+++|+++++.++
T Consensus       246 ~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~  282 (283)
T PF10323_consen  246 YLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLK  282 (283)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcC
Confidence            2   334566788999999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.62  E-value=9.3e-16  Score=148.36  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=87.7

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|+++|+++.|||+||+++++ ..|+.+... .+   .|++|+..|++.+++...+.++|+++|++||+|||.||+||.
T Consensus        64 ~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~---~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~  138 (338)
T PHA03234         64 AKHNATSFYLITLFASDFLHML-CVFFLTLNR-EA---LFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRK  138 (338)
T ss_pred             ccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hC---CccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechh
Confidence            4688999999999999999975 556554432 33   599999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEKS  485 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  485 (492)
                      +++.  +++++...++++|+.+++.++|++...
T Consensus       139 ~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~  169 (338)
T PHA03234        139 KNDK--KNNHIGRNIGILFLASAMCAIPAALFV  169 (338)
T ss_pred             hhhh--hhhhHHHHHHHHHHHHHHHHhhHhHee
Confidence            7642  344555666777999999999987543

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=99.58  E-value=2.2e-13  Score=129.44  Aligned_cols=273  Identities=14%  Similarity=0.172  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhcceeeeeeeecc---ccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccccc
Q psy11022         39 NRVARLLITTGLSVLGSVGNGYMISSVMIED---HLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM  115 (492)
Q Consensus        39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~---~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~  115 (492)
                      .+.+..++..+..++|++||+.++.+-..+.   +.-+|.+..+.+||+++++.............+...   ....+..
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~---~~~~~~~   81 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPN---IYFSENV   81 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch---hhhhhhH
Confidence            4567788888999999999999998876542   223488999999999999988655544444443332   2344556


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchh----hHHhHhhHHHHHHH--HHhhhhhhhcc-c---c
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKS----HIILSVIMIWLVSI--LLTTLQFIYKV-G---P  185 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~----~~~~~i~~~w~~s~--~~~~~~~~~~~-~---~  185 (492)
                      ++...++..+....|.|..+++++--++.|+..-+.--..=++    .+..++.+.++.++  ....|...... +   .
T Consensus        82 ~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~  161 (303)
T PF05296_consen   82 YKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNT  161 (303)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccc
Confidence            8888999999999999999999999999998763211111222    23345566677777  33333332211 0   1


Q ss_pred             cccccc-----cccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----cccchhhHHHHHHHHHHH
Q psy11022        186 DYCSKK-----VSYM-ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPP----VIFGWDYSLMLTNMYSYI  255 (492)
Q Consensus       186 ~~C~~~-----~~~~-~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  255 (492)
                      ..+...     .+.. ..+......+...+|++++.++...+...++||.++.+++.+    .+.+.+.|+.|++....+
T Consensus       162 ~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~  241 (303)
T PF05296_consen  162 NNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLI  241 (303)
T ss_pred             cCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence            111111     1111 122222334788999999999999999888888776554443    344566777777777766


Q ss_pred             HHHHHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        256 MFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       256 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      .|.++++-..+ .......+.......+...+....+..+|+|..+.|+++|+++++.+.
T Consensus       242 ly~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~  300 (303)
T PF05296_consen  242 LYIIYFLSLIL-SFLSFFFPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILW  300 (303)
T ss_pred             HHHHHHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence            66665544332 122222344455566777788899999999999999999999999884

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=99.55  E-value=4.2e-13  Score=125.88  Aligned_cols=254  Identities=17%  Similarity=0.168  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHH
Q psy11022         42 ARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWF  121 (492)
Q Consensus        42 ~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  121 (492)
                      ....+..+.++++++|-++++..++..|++|++.+-++.-++++|++..+..+...   ....    ...++..|.++++
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~---~~~~----~~~~s~lC~~Qaf   80 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT---LSPS----AGENSFLCQFQAF   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH---hccc----CCCCCcchhhHhH
Confidence            45566667789999999999999999999999999999999999998774333221   1111    2345667999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhh---cccccccccccccchhH
Q psy11022        122 LTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY---KVGPDYCSKKVSYMELY  198 (492)
Q Consensus       122 ~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~---~~~~~~C~~~~~~~~~~  198 (492)
                      +..+...++.+-.++||++=|+.+++...    ..+|.-+...+.+|.++++.+..++..   +.....|+...+. ..+
T Consensus        81 liq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WCWI~~~~-~~~  155 (303)
T PF05462_consen   81 LIQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWCWIKPEW-DVW  155 (303)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCceeecCCC-cch
Confidence            99999999999999999999999987522    235555667889999999887766543   3344579887543 222


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhcc
Q psy11022        199 QGIIGSLFFFIPIIITCI----LYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFR  274 (492)
Q Consensus       199 ~~~~~~~~~~ip~~ii~~----~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~  274 (492)
                      ..    ..+.+|+.++..    .+....+...+..+.   ....+++++.|...-+..-.++|++||.|..+..+.....
T Consensus       156 r~----~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~---~~sd~~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~  228 (303)
T PF05462_consen  156 RF----ALFYIPLWIIIIISAILVGITMRYIYRVIRN---GVSDNKDKHLKYQLKLVNYPLIFIICWIFATINRIYNFIG  228 (303)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22    233444332222    122222222221111   1111122223333335567789999999999999998886


Q ss_pred             CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022        275 HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLF  314 (492)
Q Consensus       275 ~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~  314 (492)
                      +.+......-..+.-++..+|.++|++.|+.+++.+...+
T Consensus       229 ~~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~  268 (303)
T PF05462_consen  229 KNPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI  268 (303)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            6555544444567778889999999999998888877655

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=99.54  E-value=3.6e-13  Score=127.09  Aligned_cols=271  Identities=10%  Similarity=0.047  Sum_probs=181.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022         37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC  116 (492)
Q Consensus        37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  116 (492)
                      +..+...++.+.+.+++-.+.++.++.++.+++..|.+.+-++.-||+.|+......-...-.....+..  +--.+..=
T Consensus        29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~v--fC~~P~~~  106 (313)
T PF10321_consen   29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAV--FCSYPRFI  106 (313)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCcc--ccCCchHh
Confidence            4456788999999999999999999999888777778999999999999999874432222222222211  11111112


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHH--hhhhhhhcccccccccc---
Q psy11022        117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL--TTLQFIYKVGPDYCSKK---  191 (492)
Q Consensus       117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~--~~~~~~~~~~~~~C~~~---  191 (492)
                      .+.+.+...+..++...-..+++||..-+..|......+..+++...+.+..++++..  -.++..++.+...-..+   
T Consensus       107 ~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~fDP~i  186 (313)
T PF10321_consen  107 YIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFFDPMI  186 (313)
T ss_pred             hhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEecCccc
Confidence            3345556677888999999999999999999865555666666555444443333322  23555544433221111   


Q ss_pred             --cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy11022        192 --VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMS  269 (492)
Q Consensus       192 --~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~  269 (492)
                        .+..+.|....-....++-.+.+.++|..+...++++++..  ...+..|.+++...+..++.+...+.++-+.    
T Consensus       187 ~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~--~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv----  260 (313)
T PF10321_consen  187 FEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS--TSSQLSKAQRQIFIQSVIICFFHAIAAVIYV----  260 (313)
T ss_pred             cCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence              11223355555566677778889999999999998876544  3334455566666666666666665544443    


Q ss_pred             HHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        270 VASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       270 ~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ...+.+.+++..........+++..+|+||...||..|++++++++
T Consensus       261 ~m~f~~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~  306 (313)
T PF10321_consen  261 YMQFFPPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG  306 (313)
T ss_pred             eeeeecccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence            2333455667777778899999999999999999999999999985

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.54  E-value=1.3e-14  Score=140.19  Aligned_cols=103  Identities=16%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             ccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcc
Q psy11022        375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPEC  454 (492)
Q Consensus       375 ~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~  454 (492)
                      +++.|+++.|||++|+++ .+.+|+.+... .+   +|.+|+..|++.+++...+..+|++++++||+|||.+|+||+++
T Consensus        59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~---~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~  133 (323)
T PHA02834         59 MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LN---EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKI  133 (323)
T ss_pred             cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cC---CcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhc
Confidence            346799999999999986 66889876543 34   58999999999999999999999999999999999999999986


Q ss_pred             cceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        455 YTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       455 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +. .+.+++...++.+|+.|+++++|++.
T Consensus       134 ~~-~~~~~~~~~i~~iWi~s~l~~~P~~~  161 (323)
T PHA02834        134 KN-KSISLSVLLSVAAWVCSVILSMPAMV  161 (323)
T ss_pred             cC-CccchHHHHHHHHHHHHHHHHhhHHH
Confidence            54 45677888889999999999998864

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.52  E-value=1.4e-14  Score=135.18  Aligned_cols=110  Identities=22%  Similarity=0.416  Sum_probs=101.6

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      .++|++.++++.|||++|++.++...|........+   .|..++..|++..++...+...|.++++++++|||.+|++|
T Consensus        13 ~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p   89 (257)
T PF00001_consen   13 KRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD---DWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHP   89 (257)
T ss_dssp             GGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS---SCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             ccCCChhHHHHHHHHHHHHhhccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            466789999999999999999999999888877776   68899999999999999999999999999999999999999


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhcccc
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFEK  484 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  484 (492)
                      ++|++..+++++...++++|+.++++++|++..
T Consensus        90 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~  122 (257)
T PF00001_consen   90 LRYRRIRTRRRARIIIILIWIISFLISLPPLFF  122 (257)
T ss_dssp             HTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999998644

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.51  E-value=2.4e-14  Score=142.35  Aligned_cols=107  Identities=16%  Similarity=0.281  Sum_probs=95.7

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      .++|++++++++|||++|++. ++..|+.+... .+   .|.+|+..|++..++...+.++|++++++|++|||+||+||
T Consensus       126 k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~---~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p  200 (417)
T PHA02638        126 KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FD---QWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYP  200 (417)
T ss_pred             ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hc---cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            367888999999999999987 46889877654 34   69999999999999999999999999999999999999999


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      .++++..+++++...++++|++++++++|++.
T Consensus       201 ~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~  232 (417)
T PHA02638        201 ISFQKYRTFNIGIILCIISWILSLIITSPAYF  232 (417)
T ss_pred             ccccceecHhhhHhhHhHHHHHHHHHHHHHHH
Confidence            99887778888888999999999999999874

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.44  E-value=1.2e-13  Score=136.65  Aligned_cols=102  Identities=18%  Similarity=0.147  Sum_probs=84.7

Q ss_pred             ccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcc
Q psy11022        375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPEC  454 (492)
Q Consensus       375 ~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~  454 (492)
                      ++..++|+.|||++|+++ ++.+|+.+..   +.+ .|..|...|++.+++...++.+|+++|++||+|||.+|++|.++
T Consensus        66 ~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~-~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~  140 (409)
T PHA03235         66 FSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQG-LLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA  140 (409)
T ss_pred             CCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCc-cccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc
Confidence            356689999999999987 5678876542   211 23345789999999999999999999999999999999999865


Q ss_pred             cceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022        455 YTFFSKSHIILSVIMIWLVSILLTTLQF  482 (492)
Q Consensus       455 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~  482 (492)
                      . ..+++++...++++|+.|+++++|+.
T Consensus       141 ~-~~~~~~a~~ii~~iWi~sll~s~P~~  167 (409)
T PHA03235        141 R-SSAYRSTYKILGLTWFASLICSGPAP  167 (409)
T ss_pred             c-CcccchhhhhHHHHHHHHHHHHHHHH
Confidence            4 35688999999999999999999864

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.42  E-value=3.4e-13  Score=131.53  Aligned_cols=108  Identities=17%  Similarity=0.237  Sum_probs=96.9

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      +.|++.++++.|||++|++.++ ..|........+   .|.+|+..|++..++......+|++++++||+|||.+|++|+
T Consensus        69 ~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~  144 (335)
T PHA03087         69 KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILF---QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPV  144 (335)
T ss_pred             cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            7889999999999999998755 567666555555   688999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhcccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEK  484 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  484 (492)
                      +|....+++++...++++|+.+++.++|++..
T Consensus       145 ~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~  176 (335)
T PHA03087        145 KSNKINTVKYGYIVSLVIWIISIIETTPILFV  176 (335)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHhccHhhe
Confidence            99999999999999999999999999888653

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.19  E-value=1.6e-10  Score=105.59  Aligned_cols=234  Identities=13%  Similarity=0.125  Sum_probs=162.5

Q ss_pred             ccccchhhHHHHHHHHHHHhhhc-hhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q psy11022         70 HLRRRGNTYIAVEALADLLVSGV-VIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC-M  147 (492)
Q Consensus        70 ~lr~~~~~~l~~Lai~Dll~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~-~  147 (492)
                      +..+|.+..+.+||+++++..+. .+|....  ..+..   .+++..||...++...+-..|+.+.++++.  |.||. .
T Consensus         6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~--~~~~~---~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItIS   78 (265)
T PF03402_consen    6 HRLKPIDLILIHLALANILVLLSRGIPQTMA--FFGWK---FFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITIS   78 (265)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH--Hhhcc---cCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEe
Confidence            33578999999999999988754 5564322  22221   358899999999999999999999999999  55665 4


Q ss_pred             Cccccc----ccchhhHHhHhhHHHHHHHHHhhhhhhh--c----------ccccccccccccchhHH--HHHHHHHHHH
Q psy11022        148 PPECYT----FFSKSHIILSVIMIWLVSILLTTLQFIY--K----------VGPDYCSKKVSYMELYQ--GIIGSLFFFI  209 (492)
Q Consensus       148 P~~~~~----~~t~~~~~~~i~~~w~~s~~~~~~~~~~--~----------~~~~~C~~~~~~~~~~~--~~~~~~~~~i  209 (492)
                      |-....    ....+.....+...|++.+++.......  .          ...++|.....+.....  .....+--++
T Consensus        79 P~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~  158 (265)
T PF03402_consen   79 PSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVL  158 (265)
T ss_pred             cCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHH
Confidence            522111    1333455666778899988776532221  1          12346765533322222  2222344467


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCC----CcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHHHHHH
Q psy11022        210 PIIITCILYMKITYKVRLARQNPSFKP----PVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA  285 (492)
Q Consensus       210 p~~ii~~~y~~i~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~  285 (492)
                      .+.+|..+.+.+...+.||+++.+.-+    ..+...|.|+++++++.+..|+..+....+...+.........+.....
T Consensus       159 fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~~~~~~~~  238 (265)
T PF03402_consen  159 FVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSPWLLNISV  238 (265)
T ss_pred             HHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCcceeEHHH
Confidence            778888888888888988877654333    3445679999999999999999999888776655444333444455667


Q ss_pred             HHHhhcccccchhhhhcChHHHHHH
Q psy11022        286 WLALSKSCINSVLYCISNRHFRNAY  310 (492)
Q Consensus       286 ~l~~~~s~~nP~IY~~~~~~~R~~~  310 (492)
                      ++....+++-|++....++++.+.+
T Consensus       239 ~ls~cfptisPfvLI~~d~~i~~~~  263 (265)
T PF03402_consen  239 FLSSCFPTISPFVLISSDKRIIKFL  263 (265)
T ss_pred             HHhHHhHhhChHHhhccCchHHHHh
Confidence            8888999999999999999887754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>KOG2087|consensus

Probab=99.14  E-value=1.2e-10  Score=107.96  Aligned_cols=112  Identities=20%  Similarity=0.245  Sum_probs=94.9

Q ss_pred             cccchHhHHHHHhhHhhhccchhHHHHHHHhcC----cCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        376 ITGNTYIAVEALADLLVSGVVIPVSAVMILAGI----KQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       376 ~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      ++...++.|||++|+++|+...-+...+....+    +..||-....|++.||+..++.+.|++.|+.+++||++.|++|
T Consensus        57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p  136 (363)
T KOG2087|consen   57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYP  136 (363)
T ss_pred             cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence            377889999999999999988887777664322    1246777789999999999999999999999999999999999


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhcccccee
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY  487 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  487 (492)
                      ++-.+.-..|..+....+.|+.+++.++.|..++.+
T Consensus       137 ~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~  172 (363)
T KOG2087|consen  137 FRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS  172 (363)
T ss_pred             ccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            997776666779999999999999999977755443

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.06  E-value=8.6e-09  Score=98.10  Aligned_cols=259  Identities=17%  Similarity=0.194  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHhhhcceeeeeeeec-cccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCC--------cccccccc
Q psy11022         45 LITTGLSVLGSVGNGYMISSVMIE-DHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ--------AEPIKEIM  115 (492)
Q Consensus        45 ~~~~~~~i~gl~gN~~vi~~i~~~-~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~--------~~~~~~~~  115 (492)
                      ++..+.+.+|++.|.++++.+.++ ++.-+...+++.|-|++|++.+....... .........        --.+|+..
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~   81 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF   81 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence            356778899999999999877654 34345667899999999999884333322 222222111        12346677


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhccc-----------
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVG-----------  184 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~-----------  184 (492)
                      |.....+...+...+.+.+.+--..||..+.++-.     ++++....++..+..++...........+           
T Consensus        82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~  156 (292)
T PF10317_consen   82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQF  156 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHh
Confidence            88888888888899999999999999999988722     56666777777777777665543321110           


Q ss_pred             -cccc----cccc-ccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHH
Q psy11022        185 -PDYC----SKKV-SYMELYQGIIGS----LFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSY  254 (492)
Q Consensus       185 -~~~C----~~~~-~~~~~~~~~~~~----~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (492)
                       +++-    .... .+..........    .......+++.++--++.+.++++   ..+..+++++.+++..|.+.+..
T Consensus       157 ~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~---~~~~S~~tk~~h~~lv~~Lt~Q~  233 (292)
T PF10317_consen  157 HPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKK---SSSMSERTKSMHRQLVKGLTIQA  233 (292)
T ss_pred             CcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence             1110    0000 000111111111    111112223333444444444442   23444556677888999999999


Q ss_pred             HHHHHHhHhHHHHHHHHhc-cCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHH
Q psy11022        255 IMFIVLWIPFCIVMSVASF-RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYIN  312 (492)
Q Consensus       255 ~~f~i~~~P~~i~~~~~~~-~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~  312 (492)
                      ..=.++..|.....++... ........+....+..+.+.+||++....-+.+|++++|
T Consensus       234 ~lP~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  234 LLPLFFYIPGVIIYFLSQFTGYEHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            9999999988877777666 455566667777788899999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.86  E-value=4.3e-08  Score=86.96  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             cccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11022         69 DHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  148 (492)
Q Consensus        69 ~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P  148 (492)
                      +++|.-.+.++.||.++|++.++..+.........+.   -..++..|..++++......++-+...+||++-|+.|.+|
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~---i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~  106 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGG---IIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP  106 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---eeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4445666779999999999999665553443333221   2345677999999999999999999999999999999999


Q ss_pred             ccccc---------ccchhhHHhHhhHHHHHHHHHhhhh---hhhcccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy11022        149 PECYT---------FFSKSHIILSVIMIWLVSILLTTLQ---FIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCI  216 (492)
Q Consensus       149 ~~~~~---------~~t~~~~~~~i~~~w~~s~~~~~~~---~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~  216 (492)
                      -...+         ...+..+.....+.|++...++...   -.+......|....++ ..+.....-+--.+..+.+++
T Consensus       107 ~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~~-~~~Rl~l~y~~~~~~~~~~i~  185 (201)
T PF11710_consen  107 NWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSRY-EWYRLWLHYIWRFIIIFAIII  185 (201)
T ss_pred             ccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccccCcEEEECCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            21110         1112223333445566655544333   3345566789888665 344555555566667888899


Q ss_pred             HHHHHHHHHHHhhc
Q psy11022        217 LYMKITYKVRLARQ  230 (492)
Q Consensus       217 ~y~~i~~~l~~~~~  230 (492)
                      .|..++..+||+-+
T Consensus       186 iY~~if~~lrr~~~  199 (201)
T PF11710_consen  186 IYIAIFFYLRRRIR  199 (201)
T ss_pred             HHHHHHHHHhhhhc
Confidence            99999999999754

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.83  E-value=5e-07  Score=86.06  Aligned_cols=265  Identities=11%  Similarity=0.053  Sum_probs=171.8

Q ss_pred             HHHHHHHHHHHHHHhhhcceeeeeeee-ccccccchhh---HHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccc--cc
Q psy11022         41 VARLLITTGLSVLGSVGNGYMISSVMI-EDHLRRRGNT---YIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIK--EI  114 (492)
Q Consensus        41 ~~~~~~~~~~~i~gl~gN~~vi~~i~~-~~~lr~~~~~---~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~--~~  114 (492)
                      .++...+-+++.++++.|.+.++.+.. .+++.+-.++   +-....+.|+-.+++.-|..+.....++...+...  +.
T Consensus         9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i   88 (303)
T PF10327_consen    9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGI   88 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCC
Confidence            356677888899999999999977654 4555543333   23456789999998888988887777654321111  12


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-----------c
Q psy11022        115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-----------V  183 (492)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-----------~  183 (492)
                      .+.....+..+......-.+..--+-|..+|.+..+.+ ..++..-........+.+..........+           .
T Consensus        89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~  167 (303)
T PF10327_consen   89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRE  167 (303)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            34444455566666666677777788999999985433 34454444444555555544443322211           1


Q ss_pred             cccccccc---------cccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHH
Q psy11022        184 GPDYCSKK---------VSYM--ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMY  252 (492)
Q Consensus       184 ~~~~C~~~---------~~~~--~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (492)
                      +.+.|...         ++..  .................+..+++..+++.+++.+++.   ..++.+++|++.+.+.+
T Consensus       168 nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i---S~~ty~kHk~av~SLi~  244 (303)
T PF10327_consen  168 NYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI---SKQTYQKHKEAVRSLIA  244 (303)
T ss_pred             hCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHH
Confidence            22223222         1111  1112222334456667777788888888888776433   33467889999999999


Q ss_pred             HHHHHHHHhHhHHHHHHHHhc-cCCcchHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022        253 SYIMFIVLWIPFCIVMSVASF-RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNA  309 (492)
Q Consensus       253 ~~~~f~i~~~P~~i~~~~~~~-~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~  309 (492)
                      -.++-.+|-+|..+....... .+...............+|.+|-++..+.++++|+-
T Consensus       245 Q~~~~~i~~~P~~~~~~~~~~~~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  245 QFATSSICILPPFIFVVVVIFEFEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             HHHHHHHHHHHHHHhhhhheecCCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence            999989999998887766555 344455555666777899999999999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.77  E-value=1.8e-06  Score=83.38  Aligned_cols=273  Identities=11%  Similarity=0.074  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHH---HHHhcCCC-cccccccc
Q psy11022         40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAV---MILAGIKQ-AEPIKEIM  115 (492)
Q Consensus        40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~---~~~~~~~~-~~~~~~~~  115 (492)
                      -.....+-.+++++|++.++..+..+..++.+|...-+++....++.++.++.-+.....   ......+. +...+...
T Consensus        16 l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~   95 (324)
T PF10292_consen   16 LRLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYR   95 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhH
Confidence            344555677788999999988887777777788878888888888888887543333322   22221111 44556677


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhh---h-cccccccccc
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI---Y-KVGPDYCSKK  191 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~---~-~~~~~~C~~~  191 (492)
                      |........++...+..+..++.+||++|-++.-+|.+ .++.....+..+.|+.++......+.   + +....+|...
T Consensus        96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~-~~~~~Gi~l~~~qi~is~~~~~~~~~~~~~~~~~~~yC~~~  174 (324)
T PF10292_consen   96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEK-SGKWLGILLAFFQILISLLILYFVYSDEDFPNERMYYCQAS  174 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC-CCccHHHHHHHHHHHHHHHHHHHHHhhhhccCccceeeEEe
Confidence            99999999999999999999999999999999955554 34444455556666666655443332   2 2234578877


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C--CCcccchhhHHHHHHHHHHHHHHHHhHhHHHHH
Q psy11022        192 VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSF-K--PPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM  268 (492)
Q Consensus       192 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~  268 (492)
                      .+...........+..++ -++..+.+..++++=+|.+++... .  .+=+.+++.|..+.+...+....+.-..+.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~-~i~~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~  253 (324)
T PF10292_consen  175 SSSSPYRVNIPFIVILVL-QILALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIFIFFYIFAS  253 (324)
T ss_pred             cCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544222222222222222 222222333333333332221111 1  111224456677776655555444444444333


Q ss_pred             HHHh-ccCC-cchHHH-HHH--HHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022        269 SVAS-FRHQ-ITPSFY-YLA--WLALSKSCINSVLYCISNRHFRNAYINLF  314 (492)
Q Consensus       269 ~~~~-~~~~-~~~~~~-~~~--~l~~~~s~~nP~IY~~~~~~~R~~~~~~~  314 (492)
                      .... +.+. +..... +..  ...-.++.+-|++.....++.|++.++-+
T Consensus       254 ~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l  304 (324)
T PF10292_consen  254 IFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKKRL  304 (324)
T ss_pred             HHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322 2222 222222 112  23335778889988888888888876655

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.73  E-value=2.2e-09  Score=103.26  Aligned_cols=260  Identities=15%  Similarity=0.126  Sum_probs=160.0

Q ss_pred             HHHHHHHhhhcceeeeeeeeccccc-cchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCC-------Cccccccccchhh
Q psy11022         48 TGLSVLGSVGNGYMISSVMIEDHLR-RRGNTYIAVEALADLLVSGVVIPVSAVMILAGIK-------QAEPIKEIMCHVQ  119 (492)
Q Consensus        48 ~~~~i~gl~gN~~vi~~i~~~~~lr-~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~-------~~~~~~~~~C~~~  119 (492)
                      -+.++++++.|.+.++.+.++.+.. -.--.++...|+.|++.+.+-....-..+..+..       ..+..+.......
T Consensus         6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (307)
T PF10326_consen    6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence            4567899999999998876532222 2334577778889988876443322222111111       1223344456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhh-hcc---------------
Q psy11022        120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI-YKV---------------  183 (492)
Q Consensus       120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~-~~~---------------  183 (492)
                      ..+...+...+...++.--+.||.++++|- +-+..+.++.....+..-+.++.+...... ...               
T Consensus        86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~-~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~  164 (307)
T PF10326_consen   86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPK-KLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLEN  164 (307)
T ss_pred             hhhhhhhHHHHHHHHHhHhhhheeeeccch-hhccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccc
Confidence            777788888889999999999999999994 334445454443333333333333221111 000               


Q ss_pred             ---cccc-------ccc-cccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHH
Q psy11022        184 ---GPDY-------CSK-KVSY------MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSL  246 (492)
Q Consensus       184 ---~~~~-------C~~-~~~~------~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~  246 (492)
                         +.+.       -.. +.+.      ..............+.+.++++|-.++++++++..+..   .++.++-+++.
T Consensus       165 y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~---S~~~~~lq~QL  241 (307)
T PF10326_consen  165 YGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM---SSKTRKLQKQL  241 (307)
T ss_pred             cCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc---ChhhHHHHHHH
Confidence               0000       000 0000      01112222335567888899999999999985543332   44555667888


Q ss_pred             HHHHHHHHHH-HHHHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHH
Q psy11022        247 MLTNMYSYIM-FIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYI  311 (492)
Q Consensus       247 ~~~~~~~~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~  311 (492)
                      .+.+.+.+++ .++...|..+......++-..............+.|++||++-.+.-||+|++++
T Consensus       242 f~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~  307 (307)
T PF10326_consen  242 FKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK  307 (307)
T ss_pred             HHHHHHHhhhhheeeecchhheeeeeccCCCCCccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence            8888877766 7778899887777666654444445556667778999999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=98.72  E-value=4.4e-06  Score=78.42  Aligned_cols=220  Identities=19%  Similarity=0.181  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHhhhcceeeeeeeecc--c--cccc--hhhHHHHHHHHHHHhhhchhcHHHHHHHhcCC-Cc-------
Q psy11022         43 RLLITTGLSVLGSVGNGYMISSVMIED--H--LRRR--GNTYIAVEALADLLVSGVVIPVSAVMILAGIK-QA-------  108 (492)
Q Consensus        43 ~~~~~~~~~i~gl~gN~~vi~~i~~~~--~--lr~~--~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~-~~-------  108 (492)
                      .-.+....+.+|+.|-++-++=-.+..  +  .++|  ..-.+..||+||++.++-.+............ ++       
T Consensus        29 f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~  108 (405)
T PF02101_consen   29 FNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGT  108 (405)
T ss_pred             hhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCC
Confidence            344555566777777776664221111  0  1112  24588899999999985544444332222110 00       


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhh--hhccccc
Q psy11022        109 EPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF--IYKVGPD  186 (492)
Q Consensus       109 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~--~~~~~~~  186 (492)
                      -......|........+++.++.+-+.+-|+|=|+.+.+--      .+.+.+..-..+|..+.++..-..  ++..+..
T Consensus       109 d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~Ps~~  182 (405)
T PF02101_consen  109 DIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLAMLYYPSIS  182 (405)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhccceeecCCHH
Confidence            01123568888888888999999999999999999885431      122334556788999888876433  2334445


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCCCcc-cchhhHHHHHHHHHHHHHHHHh
Q psy11022        187 YCSKKVSYMELYQGIIGSLFFFIPIIITC----ILYMKITYKVRLARQNPSFKPPVI-FGWDYSLMLTNMYSYIMFIVLW  261 (492)
Q Consensus       187 ~C~~~~~~~~~~~~~~~~~~~~ip~~ii~----~~y~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~i~~  261 (492)
                      .|....++...++     +...+|+++..    +.|.+..+++-+.-+.+...-..+ ++......+-.+.+.++|.+||
T Consensus       183 ~Ce~~l~~alphY-----vttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCW  257 (405)
T PF02101_consen  183 RCESGLEHALPHY-----VTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICW  257 (405)
T ss_pred             hhhhhhhhcchhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5764433322221     22334444444    455555555544433322222221 2222334445677889999999


Q ss_pred             HhHHHHHHHHhc
Q psy11022        262 IPFCIVMSVASF  273 (492)
Q Consensus       262 ~P~~i~~~~~~~  273 (492)
                      +|..+-.++..+
T Consensus       258 lpNIINg~LL~~  269 (405)
T PF02101_consen  258 LPNIINGSLLFY  269 (405)
T ss_pred             hhhhHhHHHHHH
Confidence            999987775543

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>KOG4193|consensus

Probab=98.65  E-value=1.1e-06  Score=90.07  Aligned_cols=240  Identities=13%  Similarity=0.164  Sum_probs=147.7

Q ss_pred             HHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc-cchhhHHHHHHHHHHH
Q psy11022         52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI-MCHVQWFLTLLCSLVT  130 (492)
Q Consensus        52 i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s  130 (492)
                      ++++++=.+.+++.+.-|++++-.+....||+++=++.-++        .+.+...  ...+. .|....++.+++..++
T Consensus       331 ~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~--------fL~~~~~--~~~~~~~C~~~a~llhff~Laa  400 (610)
T KOG4193|consen  331 IISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELL--------FLLGIDR--TSTSVVLCIAAAILLHFFFLAA  400 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH--------Hhccccc--ccCcccccHHHHHHHHHHHHHH
Confidence            33333333344444444666554477778888872222111        1111111  11222 6999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-------cccccccccccchhHHHHHH
Q psy11022        131 VWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-------GPDYCSKKVSYMELYQGIIG  203 (492)
Q Consensus       131 ~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-------~~~~C~~~~~~~~~~~~~~~  203 (492)
                      ..-+.++++.-|..++.=   .+...+++.....+..|..++++.......+.       ...+|+.+.+....+.    
T Consensus       401 F~Wm~leg~hl~~~~v~v---f~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~----  473 (610)
T KOG4193|consen  401 FFWMLLEGFHLYLLLVEV---FRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS----  473 (610)
T ss_pred             HHHHHHHHHHHHHHHHHH---hccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE----
Confidence            999999999999965543   33345555566657999999988776554332       2346888865433322    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCC-CCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHH
Q psy11022        204 SLFFFIPIIITCILYMKITYKVR-LARQNPSF-KPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF  281 (492)
Q Consensus       204 ~~~~~ip~~ii~~~y~~i~~~l~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~  281 (492)
                         ++.|+.+++.+++.++...- +.-++..+ +...++....+..+..+.++.+.-+.|.-..    ............
T Consensus       474 ---F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi----~s~~~~~~~v~~  546 (610)
T KOG4193|consen  474 ---FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGI----FSWLPGTSVVFA  546 (610)
T ss_pred             ---EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccchHHH
Confidence               66777777777755443332 22111111 1112222222567777778778888885432    222222566677


Q ss_pred             HHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        282 YYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       282 ~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      |+..++-.++..+=.+.|++++++.|++.++.++
T Consensus       547 YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~  580 (610)
T KOG4193|consen  547 YLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC  580 (610)
T ss_pred             HHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence            7777777888888899999999999999999885

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.65  E-value=3e-06  Score=81.28  Aligned_cols=269  Identities=12%  Similarity=0.128  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHHhhhcceeeeeeeec-cccccchhhHHH----HHHHHHHHhhhchhcHHHHHHHhcCCCc-cccccccc
Q psy11022         43 RLLITTGLSVLGSVGNGYMISSVMIE-DHLRRRGNTYIA----VEALADLLVSGVVIPVSAVMILAGIKQA-EPIKEIMC  116 (492)
Q Consensus        43 ~~~~~~~~~i~gl~gN~~vi~~i~~~-~~lr~~~~~~l~----~Lai~Dll~~~~~~p~~~~~~~~~~~~~-~~~~~~~C  116 (492)
                      .....=++.++++.-|.+.++++.++ ++.-+..-..++    -..+.|+..+.+..|........+.... ...-+.-.
T Consensus         6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~   85 (302)
T PF10318_consen    6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence            44555667777888888888766554 332222222232    3457888888888887766666554331 11112346


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhccc----------cc
Q psy11022        117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVG----------PD  186 (492)
Q Consensus       117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~----------~~  186 (492)
                      .++.++..........+...+--+||.++..+-+  +...++.........++.+.....|......+          ..
T Consensus        86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~  163 (302)
T PF10318_consen   86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKY  163 (302)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc
Confidence            7777888888888888999999999999997633  22223333444455555555555554432111          11


Q ss_pred             ccccc--c--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q psy11022        187 YCSKK--V--------SYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIM  256 (492)
Q Consensus       187 ~C~~~--~--------~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (492)
                      .|...  .        +.+..+.........++....+.+....+.+.++++.+  .+..++++|.++|..+.+.+.+++
T Consensus       164 pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~--~~~S~~T~k~Qkkfl~~l~iQ~~i  241 (302)
T PF10318_consen  164 PCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK--KTMSKKTRKMQKKFLIALIIQVLI  241 (302)
T ss_pred             cCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhhCHHHHHHHHHHHHHHHHHHHH
Confidence            23221  0        11122323333333344444444444455555555543  444556667788888888777766


Q ss_pred             HH-HHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        257 FI-VLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       257 f~-i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      .+ +.-.|..........+............+...+..+.-++..+.+|.+|+.++++++
T Consensus       242 p~~~l~~P~~~~~~~~~~~~~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~  301 (302)
T PF10318_consen  242 PFIFLFIPLIYFIISIIFGYYNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR  301 (302)
T ss_pred             HHHHHhhhHHHHHHHHhccccccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence            44 445677766665555555566666777788899999999999999999999999985

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.62  E-value=1.3e-07  Score=88.17  Aligned_cols=107  Identities=18%  Similarity=0.287  Sum_probs=86.5

Q ss_pred             cccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeee
Q psy11022        370 YRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC  449 (492)
Q Consensus       370 ~~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~  449 (492)
                      .++++|++.++++..+|++|++.++..+|.....+  ++   -......|-.+.+...++...+...+.+|++||++||+
T Consensus        17 ~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~---~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~   91 (257)
T PF10320_consen   17 RNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RD---HQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVC   91 (257)
T ss_pred             hccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hh---eeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEe
Confidence            45689999999999999999999888888776333  21   22677789999999999999999999999999999999


Q ss_pred             ccCcccceeehhHHHHHHHHHHHHHHHHhhhc
Q psy11022        450 MPPECYTFFSKSHIILSVIMIWLVSILLTTLQ  481 (492)
Q Consensus       450 ~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  481 (492)
                      .|++|++..+.+-...+.....+.+......-
T Consensus        92 ~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~  123 (257)
T PF10320_consen   92 FPLRYRTISTRKYLIILLIFPVIYSIFFTVIG  123 (257)
T ss_pred             ehhhhhhcccccchhhHhHHHHHHHHHHHhhe
Confidence            99999998888766666566666666554433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.59  E-value=4.9e-07  Score=85.56  Aligned_cols=252  Identities=13%  Similarity=0.120  Sum_probs=138.0

Q ss_pred             HHHHHhhhcceeeeeeeeccc--c-ccchhhHHHHHHHHHHHhhhchhcH-HHHHHHhcCCC----ccccccccchhhHH
Q psy11022         50 LSVLGSVGNGYMISSVMIEDH--L-RRRGNTYIAVEALADLLVSGVVIPV-SAVMILAGIKQ----AEPIKEIMCHVQWF  121 (492)
Q Consensus        50 ~~i~gl~gN~~vi~~i~~~~~--l-r~~~~~~l~~Lai~Dll~~~~~~p~-~~~~~~~~~~~----~~~~~~~~C~~~~~  121 (492)
                      -++.+++.+..+++++.++|+  . +++.+.+...-++.|+++-+...+. -+.........    .....+.......+
T Consensus         7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~   86 (275)
T PF02118_consen    7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF   86 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence            345666777777777777766  4 5666666666667777664332221 11111000000    00223344667778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc------ccccccccccccc
Q psy11022        122 LTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK------VGPDYCSKKVSYM  195 (492)
Q Consensus       122 ~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~------~~~~~C~~~~~~~  195 (492)
                      +......+...+...+++||+-++..|.++.+..++.. ...++++.++++....+.+...      .+...-.......
T Consensus        87 l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (275)
T PF02118_consen   87 LQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYNDTVS  165 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHccccEEEEECCceEEEEEeccc
Confidence            88889999999999999999999999988877666544 3445555555554433333211      1111111111111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccC
Q psy11022        196 ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRH  275 (492)
Q Consensus       196 ~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~  275 (492)
                      ............++..++.++++....+++++.++       +.++.|++..+..+...+.+.+.-....+.........
T Consensus       166 ~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~-------~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~~~~~~  238 (275)
T PF02118_consen  166 WASLSIFSLIYFIIIIIITIITNIITYRRLRKLSK-------RIKSVERNLTIISFIISFVQLLIAIWQIINSFAFFFDF  238 (275)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            12222333344555556666777777777776531       12244666666666666666655444443211111112


Q ss_pred             Cc--chHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022        276 QI--TPSFYYLAWLALSKSCINSVLYCISNRHFRNA  309 (492)
Q Consensus       276 ~~--~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~  309 (492)
                      .+  ...........-.-+...|++-...++++|++
T Consensus       239 ~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~  274 (275)
T PF02118_consen  239 LPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ  274 (275)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence            11  22222222333355777899999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>KOG4564|consensus

Probab=98.42  E-value=1.4e-05  Score=78.52  Aligned_cols=259  Identities=13%  Similarity=0.121  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCC-----cc----cccccc
Q psy11022         45 LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ-----AE----PIKEIM  115 (492)
Q Consensus        45 ~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~-----~~----~~~~~~  115 (492)
                      +++.+-..++++.=++.+.++..-|++|-..|++=.||.++=++-+...+.............     ..    ..+...
T Consensus       149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (473)
T KOG4564|consen  149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG  228 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence            344443333333333334444556899999999999999999988865555544333222210     11    245677


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--ccccccccccc
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--VGPDYCSKKVS  193 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--~~~~~C~~~~~  193 (492)
                      |+....+...+..+..+-+.+=++.-|-.++--..    -.+++-....++.|.+++++..+..+-.  .+...|+...+
T Consensus       229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~----ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~~CW~~~~  304 (473)
T KOG4564|consen  229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF----SERRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDTGCWDSND  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec----cCccHHHHHHHHhhCCcHHHhhhHHhHheeeccccccccCC
Confidence            99999888888888888887777766655543321    1255667778999999999988766532  22235876654


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhc
Q psy11022        194 YMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASF  273 (492)
Q Consensus       194 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~  273 (492)
                      ....+.++.  .-.++++++-.+..+.|.+.+-++-+..+..   .....+|++|..++++=+|-+-.+.+       .+
T Consensus       305 ~~~~~WIi~--gPi~~ai~vNf~flinIvrILv~KLr~~~~~---~~~~y~K~vKaTLvLIPLfGI~~ilf-------~~  372 (473)
T KOG4564|consen  305 TGHIWWIIR--GPILLAILVNFIFLINIVRILVTKLRASNAS---ETDQYRKLVKATLVLIPLFGIHYILF-------AF  372 (473)
T ss_pred             CcceEEEEe--ccHHHHHHHHHHHHHHHHHHHHHHhcCcccc---chHHHHHHHHHHHHHHHHcCCeeEEE-------Ee
Confidence            322222221  2234455556666666777665543332222   22336778887777765555543221       12


Q ss_pred             cCCc----chHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccccc
Q psy11022        274 RHQI----TPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCC  319 (492)
Q Consensus       274 ~~~~----~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~  319 (492)
                      .+..    ....++...+..++..+=.++|++.|+|.|.++||.+.+.+-
T Consensus       373 ~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~  422 (473)
T KOG4564|consen  373 RPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRL  422 (473)
T ss_pred             cCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcCh
Confidence            2222    222334456777888999999999999999999999865443

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.37  E-value=7.4e-05  Score=69.49  Aligned_cols=263  Identities=13%  Similarity=0.099  Sum_probs=141.0

Q ss_pred             HHHHHHHHHhhhcceeeeeeeecccccc-chhhHHHHHHHHHHHhhhc--hhcHHHHHHHhcC----CCccccc-cccch
Q psy11022         46 ITTGLSVLGSVGNGYMISSVMIEDHLRR-RGNTYIAVEALADLLVSGV--VIPVSAVMILAGI----KQAEPIK-EIMCH  117 (492)
Q Consensus        46 ~~~~~~i~gl~gN~~vi~~i~~~~~lr~-~~~~~l~~Lai~Dll~~~~--~~p~~~~~~~~~~----~~~~~~~-~~~C~  117 (492)
                      +=-+.++++.+.|-+.++.+..+|+.+- .-.++++--|+-|++.++.  .+|..+...-...    .+.|-.+ +..-.
T Consensus        10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~   89 (310)
T PF10319_consen   10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQ   89 (310)
T ss_pred             HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHH
Confidence            3345678899999999999988887653 4457889999999999864  3443322211100    0011110 11111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhh-----------------
Q psy11022        118 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI-----------------  180 (492)
Q Consensus       118 ~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~-----------------  180 (492)
                      .....-......|-..+..--+.||+++++|..-++.+.+......+...-.....+...-..                 
T Consensus        90 ~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~  169 (310)
T PF10319_consen   90 HLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFR  169 (310)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence            122223344455555666777899999999954444444444333333322222222221111                 


Q ss_pred             --hcccccc-----ccccc-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCCcccchhhHHHHHH
Q psy11022        181 --YKVGPDY-----CSKKV-SYMELYQGIIGS-LFFFIPIIITCILYMKITY-KVRLARQNPSFKPPVIFGWDYSLMLTN  250 (492)
Q Consensus       181 --~~~~~~~-----C~~~~-~~~~~~~~~~~~-~~~~ip~~ii~~~y~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  250 (492)
                        ++.+...     +.... ++........++ ....+.... +..|...-. ..+|-+++.....+++.+-+++..|.+
T Consensus       170 e~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~S-i~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~qL~~AL  248 (310)
T PF10319_consen  170 EVYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYS-IILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQLFKAL  248 (310)
T ss_pred             HHhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhhCHhHHHHHHHHHHHH
Confidence              0111110     11111 111222222222 222222222 222333322 223333344445555666778888888


Q ss_pred             HHHHHH-HHHHhHhHHHHHHHHhcc-CCcchHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022        251 MYSYIM-FIVLWIPFCIVMSVASFR-HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNA  309 (492)
Q Consensus       251 ~~~~~~-f~i~~~P~~i~~~~~~~~-~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~  309 (492)
                      .+.+++ .+++..|..+......+. +...+..+........=+.+||+.-.+.-+.+|++
T Consensus       249 ~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r  309 (310)
T PF10319_consen  249 IVQTVIPICVSFSPCVLSWYGPIFGIDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR  309 (310)
T ss_pred             HHHHHhHHHHhhccHHHHHhHHHHcCChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence            887766 678888988877666664 33445555555555567999999999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.36  E-value=6.5e-07  Score=84.56  Aligned_cols=109  Identities=18%  Similarity=0.356  Sum_probs=88.4

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccch-hHHHHHHHHHHHHHHHHHHHHhhhceeeeec
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC-HVQWFLTLLCSLVTVWTLAMIAMENYVRLCM  450 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~  450 (492)
                      ..+|++.+.+..+.|++|++.++..+-+..+....+.   -...+... .+.+.........+.++..+||++|+.||+.
T Consensus        22 ~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~---~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~f   98 (274)
T PF10328_consen   22 KSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDI---SFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFF   98 (274)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeee
Confidence            3677888999999999999998866655666666553   22333333 4448888888889999999999999999999


Q ss_pred             cCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        451 PPECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       451 p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      |.+|++..+.+.+..+++.+|++++....+++.
T Consensus        99 P~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~  131 (274)
T PF10328_consen   99 PFKYKKIFSFKNTIILIAFIWLLSIIISTILYF  131 (274)
T ss_pred             HHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence            999999999999999999999999977666554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.35  E-value=4.6e-05  Score=70.78  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhh
Q psy11022         40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQ  119 (492)
Q Consensus        40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~  119 (492)
                      ..+...+-++.+.+....|..++..+..+|+.+++.-.++---.+.|.+.+....+............+....+..-...
T Consensus         5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~   84 (273)
T PF10316_consen    5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence            34556677778899999999999988877774455556777789999999977666655555433221111122233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHH
Q psy11022        120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMI  167 (492)
Q Consensus       120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~  167 (492)
                      ++...............||+||.+|+..|..|++.+.+-......+.+
T Consensus        85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~  132 (273)
T PF10316_consen   85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIA  132 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHH
Confidence            455556667888899999999999999999888866655444433333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=98.24  E-value=6.1e-05  Score=67.61  Aligned_cols=231  Identities=13%  Similarity=0.269  Sum_probs=142.5

Q ss_pred             cccccc-chhhHHHHHHHHHHHhhhc----hhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022         68 EDHLRR-RGNTYIAVEALADLLVSGV----VIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY  142 (492)
Q Consensus        68 ~~~lr~-~~~~~l~~Lai~Dll~~~~----~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy  142 (492)
                      .++.|+ +...|+..|.++-++.+.+    .+|..+.......    -..+..-.+..+...++.++-.+.-..||+.|.
T Consensus        41 W~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~----~~~s~~f~~~Sy~idf~h~siLfsNlviaIqR~  116 (305)
T PF04789_consen   41 WSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKE----FVQSELFIFMSYLIDFCHYSILFSNLVIAIQRF  116 (305)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHH----HhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344444 6788999999998887754    4454443333221    222333556678888999999999999999998


Q ss_pred             HHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccc----------cccccc-----cccchhHHHHHHHHHH
Q psy11022        143 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGP----------DYCSKK-----VSYMELYQGIIGSLFF  207 (492)
Q Consensus       143 ~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~----------~~C~~~-----~~~~~~~~~~~~~~~~  207 (492)
                      ...-.--.-.+.+.+....+....+|+.+..........++..          -.|...     .+..+.....-..+.+
T Consensus       117 fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~  196 (305)
T PF04789_consen  117 FVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEIILQF  196 (305)
T ss_pred             eeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHHHHHH
Confidence            7765321222345566777888899999988765444322211          135544     2333556667777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHH---HHH
Q psy11022        208 FIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF---YYL  284 (492)
Q Consensus       208 ~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~---~~~  284 (492)
                      .+|+++... |+.+..++..+++..      ..+.|.+..|..+.+.   ++...+..+...-....-.....+   ++.
T Consensus       197 ~IPi~Il~i-YiAIIiKI~~MKkss------LnK~Ei~ILKQAifIF---vlFQ~ss~VFl~~qt~~~~~~tAFlIKR~i  266 (305)
T PF04789_consen  197 GIPIFILVI-YIAIIIKIIKMKKSS------LNKNEITILKQAIFIF---VLFQASSCVFLLCQTFKFNVATAFLIKRII  266 (305)
T ss_pred             hHHHHHHHH-HHHHHHHHHHHhhcc------CCchhHHHHHHHHHHH---HHHHHHHHHHHhheeeeecchHHHHHHHHH
Confidence            998876655 544444444443222      2244777777776654   444555544444444332333332   333


Q ss_pred             HHHHhhcccccchhhhhcChHHHHHHHH
Q psy11022        285 AWLALSKSCINSVLYCISNRHFRNAYIN  312 (492)
Q Consensus       285 ~~l~~~~s~~nP~IY~~~~~~~R~~~~~  312 (492)
                      ..+-....+.-|..+.+.+||.|+-+-.
T Consensus       267 NT~ei~agaatP~ffffTs~eirk~~s~  294 (305)
T PF04789_consen  267 NTMEIFAGAATPCFFFFTSKEIRKLVSS  294 (305)
T ss_pred             HHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence            4455567889999999999999998743

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.07  E-value=1.5e-06  Score=80.52  Aligned_cols=203  Identities=13%  Similarity=0.100  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHH
Q psy11022         45 LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL  124 (492)
Q Consensus        45 ~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~  124 (492)
                      ++..+-+.+++++-.+.+......|++|+..+....||++++++..+..+... .......   ....+..|...+.+.+
T Consensus         5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~-~~~~~~~---~~~~~~~C~~~a~~~h   80 (242)
T PF00002_consen    5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGI-SQTFSPI---STTNHCLCRAIAILLH   80 (242)
T ss_dssp             HHHHHHHH------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheeh-hhccccc---cccccccchhhhhHhH
Confidence            34445555666666666666666688888778899999999998875443321 1111110   0111224999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc---ccccccccccccchhHHHH
Q psy11022        125 LCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK---VGPDYCSKKVSYMELYQGI  201 (492)
Q Consensus       125 ~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~  201 (492)
                      .+..++..-+.+.++|-|..+..+..    ..+++.+...+..|.+++++.......+   .+.+.|+...+....    
T Consensus        81 y~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CWl~~~~~~~----  152 (242)
T PF00002_consen   81 YFFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCWLSNDWGFI----  152 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeecccccccccccccCCCceE----
Confidence            99999999999999999999988722    1245556677889999998877665544   234568555422111    


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHHhHhHH
Q psy11022        202 IGSLFFFIPIIITCILY----MKITYKVRLARQNPSFKPPVIFGWDY-SLMLTNMYSYIMFIVLWIPFC  265 (492)
Q Consensus       202 ~~~~~~~ip~~ii~~~y----~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~i~~~P~~  265 (492)
                         ..+..|..++...+    ..+.++++++.++   ++.++.++++ +..+....+..++.+.|....
T Consensus       153 ---~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~L~~llg~~w~~~~  215 (242)
T PF00002_consen  153 ---WAFVGPVLIILLINIVIFILVLRVLVRKSRS---SDKSEKKKRRKKILRASLILLPLLGITWLFGI  215 (242)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ---EEEEecccceecccchhheeeEEeehhhhhh---hhhhhccchhhhHHHHHHHHHHHHHHHheeee
Confidence               22344554444433    3444444443331   1111122222 366666777777788887643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF03125 Sre: C

Probab=97.95  E-value=0.0014  Score=64.41  Aligned_cols=265  Identities=14%  Similarity=0.107  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHH---HhhhchhcHHHHHHHh-cCC-----Ccc
Q psy11022         39 NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADL---LVSGVVIPVSAVMILA-GIK-----QAE  109 (492)
Q Consensus        39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dl---l~~~~~~p~~~~~~~~-~~~-----~~~  109 (492)
                      ......++-.++.+++..-......++.+.|..|.-.+.+.......-+   +.=+...|........ +..     .-|
T Consensus        25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~  104 (365)
T PF03125_consen   25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWW  104 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhh
Confidence            4555555555666666655555556677778888765555444433332   2222333333222110 000     001


Q ss_pred             cc-----------cccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhH-HhHhhHHHHHHHHHhh
Q psy11022        110 PI-----------KEIM-CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHI-ILSVIMIWLVSILLTT  176 (492)
Q Consensus       110 ~~-----------~~~~-C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~-~~~i~~~w~~s~~~~~  176 (492)
                      ..           .+.. -.+.+++...........+.++++||.+|-..--.|.++ +++.. ..+++..-++++..+.
T Consensus       105 t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~-~R~~I~~~l~~~~~~~~~~~s~  183 (365)
T PF03125_consen  105 TDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK-SRRWISILLIIFSQIFSIIFSY  183 (365)
T ss_pred             ccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHH
Confidence            11           1111 223345555555666899999999999999888666554 33322 2223333333333332


Q ss_pred             hhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCC-C-----CCcccchhhHH
Q psy11022        177 LQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITY----KVRLARQNPSF-K-----PPVIFGWDYSL  246 (492)
Q Consensus       177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~----~l~~~~~~~~~-~-----~~~~~~~~~~~  246 (492)
                      .... .              ...........+++.++-...+..+.+    ..++.++..++ +     ++=+-+++.|.
T Consensus       184 ~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~l~~~~~~~~~YSLs~RFQi~ENir~  248 (365)
T PF03125_consen  184 FVIF-N--------------IIPFIFHVIIFIVSNIISFVLFFILYRYNRKRLKKLENPRRKISKYSLSQRFQIKENIRS  248 (365)
T ss_pred             HHHH-H--------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCceechhhHhhHHHHHHH
Confidence            1111 0              000111112222222222222222222    11222211111 1     01112334455


Q ss_pred             HHHHH---HHHHHHHHHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccccc
Q psy11022        247 MLTNM---YSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCC  319 (492)
Q Consensus       247 ~~~~~---~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~  319 (492)
                      .+.+.   ...+.+.+.-....+....+...+..............+++.+=|.+-....++.|+++++.+....|
T Consensus       249 l~l~~~~vi~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~  324 (365)
T PF03125_consen  249 LKLLKRVVIVIAFFIILCLIILILLSFDLSPSYRTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC  324 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence            55443   33333333222222222222222222333445556777888888888889999999999998865444

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.93  E-value=0.00093  Score=64.43  Aligned_cols=268  Identities=10%  Similarity=0.067  Sum_probs=140.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccc-hhhHHHHHHHHHHHhhhchhcH---HHHHHHhcCCC--cccc
Q psy11022         38 WNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRR-GNTYIAVEALADLLVSGVVIPV---SAVMILAGIKQ--AEPI  111 (492)
Q Consensus        38 ~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~-~~~~l~~Lai~Dll~~~~~~p~---~~~~~~~~~~~--~~~~  111 (492)
                      +.-....++..++.++++++....+-.++++.-..+. ...++.+|..+++=.. ...-.   .+...+...++  +..+
T Consensus        18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~-~y~~~~~~~lyrsf~~~~dpC~i~f   96 (328)
T PF02117_consen   18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQI-SYAIIQIWSLYRSFFYSDDPCSILF   96 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCeeeEe
Confidence            3445566677777788888877777666555445553 4556777776666433 21111   12222222222  5677


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc---ccccc
Q psy11022        112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV---GPDYC  188 (492)
Q Consensus       112 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~---~~~~C  188 (492)
                      .+..|........++.....+.-.++.+||.+|-..| ++..+.+......+.+.+-+.++.........++   ....|
T Consensus        97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~-~~~~~~~~~~g~~l~i~~li~s~~~~~~i~~~~p~~gyv~~C  175 (328)
T PF02117_consen   97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFP-KYYSKKSYIIGIILSILVLILSFITGFIIYWDDPLDGYVPSC  175 (328)
T ss_pred             ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhch-hhhhhhhHHHHHHHHHHHHHHHHHHeeEEEeCCCCccccccc
Confidence            7788999999999999999999999999999999988 4444333333333333333334433322221111   22457


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc--cchhhHHHHHHHHHHHHHHHHhHhHHH
Q psy11022        189 SKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVI--FGWDYSLMLTNMYSYIMFIVLWIPFCI  266 (492)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~i~~~P~~i  266 (492)
                      ................+.+.+.++ .++....+.+.-+|..++.+-+-.++  .++....++.+..+.+.-+++..-+.+
T Consensus       176 ~~~p~~s~~~~~~~~~~~~~l~i~-~~i~s~~l~~~nkk~e~~~~f~v~~Ry~~~Eni~ST~aI~~i~~~Q~i~~~iys~  254 (328)
T PF02117_consen  176 FYPPKNSVNRFNIFLIVCFVLTIF-NLIVSIFLMYYNKKKEKKTRFDVNSRYQKRENINSTKAICIISISQFICMFIYSF  254 (328)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766443222222222222222222 22334444444444433322222121  234456677777777776666665554


Q ss_pred             HHHH-Hhc-cCCcchHHHHHHHHHhhc---ccccchhhhhcChHHHH
Q psy11022        267 VMSV-ASF-RHQITPSFYYLAWLALSK---SCINSVLYCISNRHFRN  308 (492)
Q Consensus       267 ~~~~-~~~-~~~~~~~~~~~~~l~~~~---s~~nP~IY~~~~~~~R~  308 (492)
                      .... ... ...++..+.......+.-   ...=|++-.+.-+..|+
T Consensus       255 ~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~l~lP~li~~~~~~~~~  301 (328)
T PF02117_consen  255 GVFILRNFRSSISPETFHNIVLWFYTFPYAALSLPLLIIYRIRRIRR  301 (328)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            3333 333 344444444444333333   33446655554444433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.40  E-value=0.0004  Score=61.72  Aligned_cols=109  Identities=14%  Similarity=0.139  Sum_probs=75.6

Q ss_pred             cchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC-----
Q psy11022        378 GNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP-----  452 (492)
Q Consensus       378 ~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~-----  452 (492)
                      .+.++.||.++|++.++..+.........+   .-..+...|..+|++....-.++-+...+||+.=|+.|.+|-     
T Consensus        36 R~~LIl~L~~aD~~qal~~~i~~~~~l~~~---~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~  112 (201)
T PF11710_consen   36 RHQLILNLLLADFIQALAFLISPIRWLARG---GIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKR  112 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            344999999999999876555445555444   334577899999999999999999999999999999999991     


Q ss_pred             -cccc---eeehhHHHHHHHHHHHHHHHHhhhccccceeee
Q psy11022        453 -ECYT---FFSKSHIILSVIMIWLVSILLTTLQFEKSIYSR  489 (492)
Q Consensus       453 -~~~~---~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  489 (492)
                       +..+   ...+........++|++...++......+.|-+
T Consensus       113 ~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~  153 (201)
T PF11710_consen  113 SKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGP  153 (201)
T ss_pred             ccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccc
Confidence             1110   112233344445777777666655534444544

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.39  E-value=0.00021  Score=69.09  Aligned_cols=117  Identities=13%  Similarity=0.193  Sum_probs=88.1

Q ss_pred             ccccc-ccchHhHHHHHhhHhhhccchhHHHHHHHhc--CcCccccc----ccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11022        372 SIIHI-TGNTYIAVEALADLLVSGVVIPVSAVMILAG--IKQAEPIK----EIMCHVQWFLTLLCSLVTVWTLAMIAMEN  444 (492)
Q Consensus       372 ~~l~~-~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~--~~~~~~~~----~~~C~~~~~~~~~~~~~s~~~l~~is~dR  444 (492)
                      ..+|+ +.|.++..+|++|++..+..++.........  .+.++...    .....+...+...+--.|.|.-++||+.|
T Consensus        24 k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR  103 (318)
T PF10324_consen   24 KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIR  103 (318)
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34565 7899999999999999988888887666544  12222211    11234445666778889999999999999


Q ss_pred             eeeeeccCccc--ceeehhHHHHHHHHHHHHHHHHhhhccccceee
Q psy11022        445 YVRLCMPPECY--TFFSKSHIILSVIMIWLVSILLTTLQFEKSIYS  488 (492)
Q Consensus       445 y~ai~~p~~~~--~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  488 (492)
                      +.+|.+|++.+  +.-+++.+...+.++++.+.++..+.+.+.++.
T Consensus       104 ~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~  149 (318)
T PF10324_consen  104 YLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIV  149 (318)
T ss_pred             HHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEE
Confidence            99999998754  345788888899999999999998888555443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.34  E-value=0.00013  Score=69.10  Aligned_cols=115  Identities=11%  Similarity=0.240  Sum_probs=80.7

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHH-hcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMIL-AGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      ..+++.+.++.+-+++|++..+........... .+..-....++..-++................+.+|++||.||++|
T Consensus        28 ~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P  107 (283)
T PF10323_consen   28 TFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFP  107 (283)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEee
Confidence            367888999999999999986644333222222 0000011122223344455555566677788899999999999999


Q ss_pred             C-cccceeehhHHHHHHHHHHHHHHHHhhhcccccee
Q psy11022        452 P-ECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY  487 (492)
Q Consensus       452 ~-~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  487 (492)
                      . ++.+.-++.+.+.++++-|+.+.+.++|.+.++.+
T Consensus       108 ~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~  144 (283)
T PF10323_consen  108 TSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF  144 (283)
T ss_pred             cHHHhhhccccchhheeeeeehhhhhheeeeeccCce
Confidence            9 88888899999999999999999999987644433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.11  E-value=0.019  Score=54.42  Aligned_cols=183  Identities=16%  Similarity=0.223  Sum_probs=108.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccccccccccc--
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVS--  193 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~C~~~~~--  193 (492)
                      =+...+......+.+...-.+.++-|.+.+..|.++ +...++-.....-++.++++..+.|.+.   ..+.|..-..  
T Consensus       103 Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~-~~i~~~i~~~~~P~i~i~p~~~~f~~~p---a~G~C~Ql~~Pf  178 (307)
T PF10322_consen  103 LKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNH-KKICRKIFRIWIPFIFIYPFCFTFPMFP---ALGYCRQLDPPF  178 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccch-hHHHHhHHHHHHHHHHHHHHHHHHHccC---CcEEEEeCCCCC
Confidence            466678888889999999999999999999999544 4455555566666777777777766543   3344543311  


Q ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CCCCCCCcccchhhHHHHHHHHHHHHHHH
Q psy11022        194 ------------YMELYQGIIGSLFFFIPIIITCILYMKITYKVRLAR-Q-NPSFKPPVIFGWDYSLMLTNMYSYIMFIV  259 (492)
Q Consensus       194 ------------~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~i  259 (492)
                                  ...............+-.+.+++.+..+++++||.+ + ...++.++.+|.|+..+.|++.+++-++.
T Consensus       179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mliP~i~  258 (307)
T PF10322_consen  179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLIPYIT  258 (307)
T ss_pred             CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHHHHHH
Confidence                        112222333455566667788889999999999876 2 22334445556666666666666544432


Q ss_pred             HhHhHHHHHHHHhccCCcchHHHHHH---HHHhhcccccchhhhhcChHHHH
Q psy11022        260 LWIPFCIVMSVASFRHQITPSFYYLA---WLALSKSCINSVLYCISNRHFRN  308 (492)
Q Consensus       260 ~~~P~~i~~~~~~~~~~~~~~~~~~~---~l~~~~s~~nP~IY~~~~~~~R~  308 (492)
                          ..+..+.....+  ....+...   +..-+..++=|.++.+..+-||+
T Consensus       259 ----n~i~~i~~~~~~--~~~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkk  304 (307)
T PF10322_consen  259 ----NGIISISFLFFP--SYSSYILLIRPFGNDCRTCIVPWYFYLTHPIFKK  304 (307)
T ss_pred             ----HHHHHHHHhcCc--hHHHHHHHHhhhhhccceeEEEEEeeecChhhcC
Confidence                222222222212  22222221   23335555667777776666654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=96.62  E-value=0.25  Score=47.38  Aligned_cols=153  Identities=9%  Similarity=0.062  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHH-HHhc-CC-----C---cc
Q psy11022         40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVM-ILAG-IK-----Q---AE  109 (492)
Q Consensus        40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~-~~~~-~~-----~---~~  109 (492)
                      +...-....+.+.+..+.+.+.+..+..+++..+-+..-+.-++++-.+.++..+...+.. .... ..     .   ..
T Consensus         8 ~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~   87 (328)
T PF01534_consen    8 KEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD   87 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence            3344555556666666667666666655655333335666667777777664443333321 0000 00     0   12


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-----cc
Q psy11022        110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-----VG  184 (492)
Q Consensus       110 ~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-----~~  184 (492)
                      ..++..|.+...+.+++..++..--+.+++.=|++-..- ..++. -.++....-+++|.++.+.++..+...     .-
T Consensus        88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~k-w~~e~-i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~l  165 (328)
T PF01534_consen   88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLK-WGSEA-IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDEL  165 (328)
T ss_pred             CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-cCcch-hhhhcchhhhHHhhhhHHHHHHHHHhcccccccc
Confidence            334577999999999888888888888899999997654 22232 335566678999999999887766542     23


Q ss_pred             cccccccccc
Q psy11022        185 PDYCSKKVSY  194 (492)
Q Consensus       185 ~~~C~~~~~~  194 (492)
                      .+.|.....+
T Consensus       166 tGiC~Vg~~~  175 (328)
T PF01534_consen  166 TGICFVGNQN  175 (328)
T ss_pred             cceeEEeCCC
Confidence            4579877544

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.25  E-value=0.25  Score=46.49  Aligned_cols=188  Identities=12%  Similarity=0.043  Sum_probs=102.0

Q ss_pred             cchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy11022         73 RRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECY  152 (492)
Q Consensus        73 ~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~  152 (492)
                      .++-.++.-+.++++...+-       ......+. -.--+.+|.+..-+.......-....++|+-.-| .|..+....
T Consensus        24 ~~~~~li~Wl~l~nl~~~IN-------aiIW~~n~-~~~~~~wCDI~~kl~~~~~~g~~~a~lcI~r~L~-~I~s~r~~~   94 (283)
T PF02076_consen   24 IGTCSLIFWLFLSNLIYFIN-------AIIWRDND-INWWPVWCDISTKLIIGSSVGIPAASLCIMRRLY-RIASARAVS   94 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------hhhcCCCC-CccCceeeeehHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence            46677888888888877621       12222221 1112278999998888887776666666665544 355542222


Q ss_pred             c--ccchhhHHhHhhHHHHHHHHHhhhhhhhcc------cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022        153 T--FFSKSHIILSVIMIWLVSILLTTLQFIYKV------GPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYK  224 (492)
Q Consensus       153 ~--~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~  224 (492)
                      .  ..++|+..+=.++++.++++.....++.+.      +..-|.......-.......+--.++.++...++-.- +++
T Consensus        95 ~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt-~~~  173 (283)
T PF02076_consen   95 LSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILT-LRR  173 (283)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            1  223666777788888888888777666433      3345777654433333333333333333333333322 333


Q ss_pred             HHHhhcC-CCCCCCc-ccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022        225 VRLARQN-PSFKPPV-IFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA  271 (492)
Q Consensus       225 l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~  271 (492)
                      ..|++++ ++.-+.+ ..-+.+|..| +..+.++.+++.+|..+..+..
T Consensus       174 f~~rr~~f~~~l~~s~s~l~~~Rf~R-L~~la~~~i~~~~P~~i~~~v~  221 (283)
T PF02076_consen  174 FIRRRKQFRDILSSSNSGLNTSRFFR-LLALALVIILIYLPLSIYYLVS  221 (283)
T ss_pred             HHHHHHHHHHHHhcCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322 1111111 1112334444 6667778888899998888873

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=95.74  E-value=0.03  Score=53.14  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      +++|++.+-++.-++++|++..+..+..    ....   .-..+...|.+++++..++..++.+=.++||++=|..+++.
T Consensus        35 k~~r~~~~rli~yl~~~~ll~~v~~~~~----~~~~---~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~  107 (303)
T PF05462_consen   35 KRLRKPINRLIFYLSIANLLTNVASMIM----TLSP---SAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKR  107 (303)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHHHHHHH----Hhcc---cCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEc
Confidence            3678888888889999999876433221    1112   11245678999999999999999988899999999999986


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhccccceeee
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSR  489 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  489 (492)
                      ...    .++.-....+.+|.++++.++.++..+.|..
T Consensus       108 ~~~----~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~  141 (303)
T PF05462_consen  108 YDE----LEKLEKYYHLVCWGIPLIPAVIPLIGNDYGP  141 (303)
T ss_pred             Ccc----HHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            432    2555567889999999999998887777654

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.58  E-value=0.0066  Score=50.48  Aligned_cols=106  Identities=8%  Similarity=0.111  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy11022         76 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFF  155 (492)
Q Consensus        76 ~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~  155 (492)
                      -.++.++.+++++..+...................+.+..=+....+..+++....+...+|+++|-..|.+|.+...++
T Consensus         4 ~vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~F   83 (153)
T PF03383_consen    4 FVYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWF   83 (153)
T ss_pred             EEEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccc
Confidence            35677888888877644222222111111111111111222333456778888899999999999999999998766689


Q ss_pred             chhhHHhHhhHHHHHHHHHhhhhhhh
Q psy11022        156 SKSHIILSVIMIWLVSILLTTLQFIY  181 (492)
Q Consensus       156 t~~~~~~~i~~~w~~s~~~~~~~~~~  181 (492)
                      |.++.+..+.+..+..+..-+.++..
T Consensus        84 s~~kl~~YC~~i~i~~~i~LlIPy~S  109 (153)
T PF03383_consen   84 SDKKLWIYCGIIAILSFISLLIPYFS  109 (153)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999988777777766666553

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.95  E-value=0.024  Score=47.23  Aligned_cols=59  Identities=10%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhceeeeeccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        425 LTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       425 ~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      ++.++.....+.-..|+++|-..|.+|.+....+|.+|.+.-+.+..++.+..-+.|+.
T Consensus        50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~  108 (153)
T PF03383_consen   50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF  108 (153)
T ss_pred             eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence            44556777888888999999999999998666799999999999888888887777763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=94.90  E-value=0.065  Score=39.05  Aligned_cols=67  Identities=13%  Similarity=0.263  Sum_probs=49.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhH-hHHHHHHHHhc--c-CCcchHHHHHHHHHhhcccccchhhhhcChHH
Q psy11022        240 FGWDYSLMLTNMYSYIMFIVLWI-PFCIVMSVASF--R-HQITPSFYYLAWLALSKSCINSVLYCISNRHF  306 (492)
Q Consensus       240 ~~~~~~~~~~~~~~~~~f~i~~~-P~~i~~~~~~~--~-~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~  306 (492)
                      +++-+|..+.+++--++|+++|+ |...-......  . ....+...+...+..+|..+|-++|.++-|..
T Consensus         4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw   74 (76)
T PF11970_consen    4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW   74 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence            34456778888999999999999 86655554442  2 22345566677888899999999999876543

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=94.64  E-value=0.31  Score=42.32  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=57.7

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--cccccc
Q psy11022        111 IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--VGPDYC  188 (492)
Q Consensus       111 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--~~~~~C  188 (492)
                      ..-..|.+..-+...+........+++|+|||+-|+.-.|    .+.......-.++-+.-+..++..+..+  ..++.|
T Consensus       112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r----l~~~f~v~v~~iit~~~~~~a~~~~~~G~~t~NdiC  187 (226)
T PF06681_consen  112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR----LSVWFVVVVHVIITFPFIFYAILNFPFGEPTPNDIC  187 (226)
T ss_pred             EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc----CCchHHHHHHHHHHHHHHHHHHHhcccCCCCcCCee
Confidence            3557799888877777766666677899999999987633    2222222222222222222233322222  345678


Q ss_pred             cccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022        189 SKKVSY--MELYQGIIGSLFFFIPIIITCILYMKITYKVRL  227 (492)
Q Consensus       189 ~~~~~~--~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~  227 (492)
                      ..-.-.  .....+..   ...++ ++-++.+..+++.+||
T Consensus       188 a~L~fs~~~~~Vri~~---tl~l~-lfAVl~N~~i~~fvkk  224 (226)
T PF06681_consen  188 AILRFSKSMELVRISY---TLGLN-LFAVLLNFVILRFVKK  224 (226)
T ss_pred             eEEEEccchHHHHHHH---HhHHH-HHHHHHHHhHheeeec
Confidence            876322  12222222   22222 3344456666666554

The function of this family is unknown.

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.50  E-value=0.62  Score=41.69  Aligned_cols=47  Identities=11%  Similarity=0.082  Sum_probs=40.0

Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q psy11022        108 AEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTF  154 (492)
Q Consensus       108 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~  154 (492)
                      +...++..++.......+....+++.-..+++||++|...--+|.+.
T Consensus        77 dLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~  123 (236)
T PF02175_consen   77 DLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT  123 (236)
T ss_pred             eEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence            45666777899999999999999999999999999999987555553

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>KOG4289|consensus

Probab=90.70  E-value=1.9  Score=48.11  Aligned_cols=178  Identities=15%  Similarity=0.157  Sum_probs=101.2

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccccccccc
Q psy11022        112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKK  191 (492)
Q Consensus       112 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~C~~~  191 (492)
                      .++.|.+...+.++.+.++...+.+-++.-|.....-..      ........++.|.++.+++...+..+   +.|+..
T Consensus      2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~------tg~mrfy~~vGwgvPa~itglavgld---DfCwlS 2292 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVD------TGPMRFYYLVGWGVPALITGLAVGLD---DFCWLS 2292 (2531)
T ss_pred             CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC------CCceeEEEEeecchhhheeeeeeccc---ceeecc
Confidence            566799999999998888888888888777777765311      11122235667888877765554433   678776


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022        192 VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA  271 (492)
Q Consensus       192 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~  271 (492)
                      ......+       .+..|+.+.+.+....+...-|.+-. ++.+.-..|-..+..+..+++++..-..|+-..     .
T Consensus      2293 ~h~~LiW-------sfagPigl~i~ms~~~~~lsa~vSc~-~k~~~f~kK~~v~~lq~~fl~llllsatwl~~l-----l 2359 (2531)
T KOG4289|consen 2293 PHDTLIW-------SFAGPIGLVILMSFYAAALSARVSCH-KKYQVFVKKGNVSVLQHSFLLLLLLSATWLLGL-----L 2359 (2531)
T ss_pred             cchheee-------eecccceeeehHHHHHHHHHHHHhhh-hhheeeeeccchhhhHHHHHHHHHHHHHHHHHH-----H
Confidence            4321111       22333333222222222111111000 000001112233455666666666666665432     2


Q ss_pred             hccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHH
Q psy11022        272 SFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYI  311 (492)
Q Consensus       272 ~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~  311 (492)
                      ...+..-..+++...+.++...+--++|+..|++.|++.+
T Consensus      2360 ~vn~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2360 AVNPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred             hcCCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence            3345566677777777777777778889999999999987

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=82.34  E-value=2.2  Score=39.91  Aligned_cols=83  Identities=10%  Similarity=-0.042  Sum_probs=50.2

Q ss_pred             hHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcccceee
Q psy11022        380 TYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFS  459 (492)
Q Consensus       380 ~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~  459 (492)
                      .++--..+.|.+.|....+............+....+..=-..+.-....+.........||+||-+|+..|..|++...
T Consensus        42 ~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~  121 (273)
T PF10316_consen   42 SLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRK  121 (273)
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCc
Confidence            34445678999999888776666655321111110111111122233445566777888999999999999988776554


Q ss_pred             hhH
Q psy11022        460 KSH  462 (492)
Q Consensus       460 ~~~  462 (492)
                      +-.
T Consensus       122 k~~  124 (273)
T PF10316_consen  122 KIP  124 (273)
T ss_pred             ccc
Confidence            433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=81.99  E-value=3.4  Score=38.36  Aligned_cols=103  Identities=16%  Similarity=0.231  Sum_probs=72.0

Q ss_pred             cccccccchHhHHHHHhhHhhhcc-chhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeec
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGV-VIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM  450 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~  450 (492)
                      ++..+|.+.-+.+||+++.++-+. .+|....  ..+.+   .+++..||+..++.=..-..|+.+-+..|.-.-+.|.-
T Consensus         5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~--~~~~~---~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP   79 (265)
T PF03402_consen    5 GHRLKPIDLILIHLALANILVLLSRGIPQTMA--FFGWK---FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISP   79 (265)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH--Hhhcc---cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEec
Confidence            345678999999999999988543 4554322  33311   26899999999999999999999999998876666543


Q ss_pred             cCc---ccceeehhHHHHHHHHHHHHHHHHhh
Q psy11022        451 PPE---CYTFFSKSHIILSVIMIWLVSILLTT  479 (492)
Q Consensus       451 p~~---~~~~~~~~~~~~~~~~~W~~~~~~~~  479 (492)
                      .-.   .-+...++.....+...|++-.++..
T Consensus        80 ~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~  111 (265)
T PF03402_consen   80 SNSRWAELKVKAPKYIGPSCLFCWILNLLINI  111 (265)
T ss_pred             CCchhhhhhhhcCCccccHHHHHHHHHHhhhc
Confidence            221   11223455666677788999887654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	492
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-10
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-10
2x72_A	349	Crystal Structure Of The Constitutively Active E113		5e-08
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		8e-08
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		8e-08
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		1e-07
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		1e-07
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		1e-07
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		7e-06
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		2e-05
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		3e-04
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		5e-05
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		3e-04
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-04
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		4e-04
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-04
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-04
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		5e-04
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		5e-04
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		7e-04

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 127/281 (45%), Gaps = 28/281 (9%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++     L+   N +I   A ADL+V  +V+P  A +++ G          +C
Sbjct: 28  GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLC 84
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
            +   L +LC   ++ TL +IA++ Y+ +  P    +  +++   + +  +W +S L++ 
Sbjct: 85  ELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSF 144
Query: 177 LQFIYKVGPDYCSKKVSYMELYQ-------------GIIGSLF-FFIPIIITCILYMKIT 222
           L  +     D   +    ++ YQ              I  S+  F+IP++I   + +++ 
Sbjct: 145 LPIMMHWWRD---EDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY 201
Query: 223 YKV-----RLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQI 277
            +      ++ R +      V+   ++  + T      +F + W+PF +V  V  F   +
Sbjct: 202 REAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL 261
Query: 278 TPSFYYLA--WLALSKSCINSVLYCISNRHFRNAYINLFHY 316
            P + ++A  WL  + S +N ++YC S   FR A+  L  +
Sbjct: 262 VPDWLFVAFNWLGYANSAMNPIIYCRSP-DFRKAFKRLLAF 301

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 127/279 (45%), Gaps = 26/279 (9%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++     L+   N +I   A ADL+V  +V+P  A +++ G          +C
Sbjct: 28  GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLC 84
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
            +   L +LC   ++ TL +IA++ Y+ +  P    +  +++   + +  +W +S L++ 
Sbjct: 85  ELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSF 144
Query: 177 LQFIYKVGPDYCSKKVSYMELYQ-------------GIIGSLF-FFIPIIITCILYMKIT 222
           L  +     D   +    ++ YQ              I  S+  F+IP++I   + +++ 
Sbjct: 145 LPIMMHWWRD---EDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY 201
Query: 223 YKVRLARQN---PSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITP 279
            + +   +     S +  V+   ++  + T      +F + W+PF +V  V  F   + P
Sbjct: 202 REAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP 261
Query: 280 SFYYLA--WLALSKSCINSVLYCISNRHFRNAYINLFHY 316
            + ++A  WL  + S +N ++YC S   FR A+  L  +
Sbjct: 262 DWLFVAFNWLGYANSAMNPIIYCRSP-DFRKAFKRLLAF 299

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C++Q F   L   + +W+L ++A+E YV +C P   +  F ++H I+ V   W++++   
Sbjct: 111 CNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
               +    Y      CS  + Y   ++      F        F IP+I+    Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
            V+  A Q            + + M+  M   I F++ W+P+  V +   F HQ     P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSCFGP 286
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
            F  + A+ A + +  N V+Y + N+ FRN  +     CC K 
Sbjct: 287 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C+++ F   L   + +W+L ++A+E YV +C P   +  F ++H I+ V   W++++   
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
               +    Y      CS  + Y   ++      F        F IP+I+    Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
            V+  A Q            + + M+  M   I F++ W+P+  V +   F HQ     P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSDFGP 286
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
            F  + A+ A + +  N V+Y + N+ FRN  +     CC K 
Sbjct: 287 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C+++ F   L   + +W+L ++A+E YV +C P   +  F ++H I+ V   W++++   
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 168
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
               +    Y      CS  + Y   ++      F        F IP+I+    Y ++ +
Sbjct: 169 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 228
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
            V+  A Q            + + M+  M   I F++ W+P+  V +   F HQ     P
Sbjct: 229 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSDFGP 285
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
            F  + A+ A + +  N V+Y + N+ FRN  +     CC K 
Sbjct: 286 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 326

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 21/222 (9%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C+++ F   L   + +W+L ++A+E YV +C P   +  F ++H I+ V   W++++   
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
               +    Y      CS  + Y   ++      F        F IP+I+    Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITPS 280
            V+ A                   +  +Y  I F++ W+P+  V +   F HQ     P 
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIYV-IAFLICWLPYAGV-AFYIFTHQGSCFGPI 287
Query: 281 FYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
           F  + A+ A + +  N V+Y + N+ FRN  +     CC K 
Sbjct: 288 FMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C+++ F   L   + +W+L ++A+E YV +C P   +  F ++H I+ V   W++++   
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
               +    Y      CS  + Y   ++      F        F IP+I+    Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
            V+  A Q            + + M+  M   I F++ W+P+  V +   F HQ     P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSCFGP 286
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
            F  + A+ A + +  N V+Y + N+ FRN  +     CC K 
Sbjct: 287 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
           C+++ F   L   + +W+L ++A+E YV +C P   +  F ++H I+ V   W++++   
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 168
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
               +    Y      CS  + Y   ++      F        F IP+I+    Y ++ +
Sbjct: 169 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 228
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
            V+  A Q            + + M+  M   I F++ W+P+  V +   F HQ     P
Sbjct: 229 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSCFGP 285
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
            F  + A+ A + +  N V+Y + N+ FRN  +     CC K 
Sbjct: 286 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 326

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 29/297 (9%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 22  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT---KTWTFGNFWC 78
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 79  EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 138
Query: 177 L------------QFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYK 224
           L            + I     + C    +  + Y      + F++P++I   +Y ++  +
Sbjct: 139 LPIQMHWYRATHQEAINCYAEETCCDFFT-NQAYAIASSIVSFYVPLVIMVFVYSRVFQE 197
Query: 225 VRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYY- 283
            +  RQ        +   ++  + T       F + W+PF IV  V   +  +     Y 
Sbjct: 198 AK--RQLQKIDKFCLK--EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI 253
Query: 284 -LAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGD 339
            L W+    S  N ++YC S   FR A+  L    C + +   S ++ G+    +G+
Sbjct: 254 LLNWIGYVNSGFNPLIYCRS-PDFRIAFQELL---CLRRS---SLKAYGNGYSSNGN 303

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 58  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 114
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++WTL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 115 EFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 174
Query: 177 L 177
           L
Sbjct: 175 L 175

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
           N +I   A ADL++   V+P  A  IL    +        C     + +LC   ++WTL 
Sbjct: 77  NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIWTLC 133
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
           +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + L
Sbjct: 134 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 175

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIP-VSAVMILAGIKQAEPIKEIM 115
           GNG +  +V+ E  L+   N  +   A+ADLLV+ +V+P V  + +  G+        I 
Sbjct: 55  GNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWN---FSRIC 111
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKS---HIILSVIMIWLVSI 172
           C V   L ++    ++W L  I+++ Y  + MP        +S    + L +  +W+++ 
Sbjct: 112 CDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAF 171
Query: 173 LLTT---LQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLAR 229
            ++      F     P  CS       +Y  ++    F++P  +T ++Y +I   ++  R
Sbjct: 172 AVSCPLLFGFNTTGDPTVCSISNPDFVIYSSVVS---FYLPFGVTVLVYARIYVVLKQRR 228
Query: 230 QNPSFK 235
           +   F+
Sbjct: 229 RKNIFE 234

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 52  VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
           V+G VGN  ++  ++    ++   N YI   ALAD LV+  +   S V ++     + P 
Sbjct: 34  VVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLM----NSWPF 89
Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
            +++C +   +       +++TL M++++ Y+ +C P +   F +     +  I IWL+S
Sbjct: 90  GDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLS 149
Query: 172 -------ILLTTLQFIYKVGPDYCS-----KKVSYMELYQGIIGSLF-FFIPIIITCILY 218
                  I+L   +    V    CS        S+ +L+  I   +F F IP++I  + Y
Sbjct: 150 SSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCY 209
Query: 219 MKITYKVRLAR 229
             +  +++  R
Sbjct: 210 TLMILRLKSVR 220

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT---KTWTFGNFWC 255
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 256 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 315
Query: 177 L 177
           L
Sbjct: 316 L 316

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 51  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 107
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 108 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 167
Query: 177 L 177
           L
Sbjct: 168 L 168

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 50  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 106
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 107 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 166
Query: 177 L 177
           L
Sbjct: 167 L 167

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 27  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 83
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 84  EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 143
Query: 177 L 177
           L
Sbjct: 144 L 144

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 57  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 113
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 114 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 173
Query: 177 L 177
           L
Sbjct: 174 L 174

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 58  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 114
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 115 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 174
Query: 177 L 177
           L
Sbjct: 175 L 175

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57  GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
           GN  +I+++   + L+   N +I   A ADL++   V+P  A  IL    +        C
Sbjct: 26  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM---KMWTFGNFWC 82
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
                + +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + 
Sbjct: 83  EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 142
Query: 177 L 177
           L
Sbjct: 143 L 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	4e-27
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-07
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	9e-26
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-06
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	1e-22
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	5e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-22
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-06
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	3e-21
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-04
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	6e-20
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	4e-16
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	7e-07
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-06
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	5e-15
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	8e-07
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	9e-06
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	7e-15
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	3e-06
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	3e-05
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-14
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-06
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	3e-05
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-14
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-07
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-05
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	8e-14
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-06
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	9e-05
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	4e-12
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-06
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	2e-04
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	2e-11
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	5e-08
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  113 bits (283), Expect = 4e-27
 Identities = 63/374 (16%), Positives = 136/374 (36%), Gaps = 47/374 (12%)

Query: 3   TPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMI 62
               S   +  P   + + +     T D       W  V   ++ + + +    GN  +I
Sbjct: 146 NLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVW-VVGMGIVMSLIVLAIVFGNVLVI 204

Query: 63  SSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFL 122
           +++   + L+   N +I   A ADL++   V+P  A  IL             C     +
Sbjct: 205 TAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT---WTFGNFWCEFWTSI 261

Query: 123 TLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK 182
            +LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + L     
Sbjct: 262 DVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 321

Query: 183 VGPDYCSKKVS----------YMELYQGIIGSLF-FFIPIIITCILYMKITYKV--RLAR 229
                  + ++          +      I  S+  F++P++I   +Y ++ ++   R  +
Sbjct: 322 WYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV-FQEAKRQLQ 380

Query: 230 QNPSFKPPVIFGWDYSLMLTNMYSYIM-----------------------FIVLWIPFCI 266
           +    +          +       + +                       F + W+PF I
Sbjct: 381 KIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFI 440

Query: 267 VMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVT 324
           V  V   +  +     +  L W+    S  N ++YC  +  FR A+  L    C + +  
Sbjct: 441 VNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL---CLRRSSL 496

Query: 325 FSRRSRGDATRPSG 338
            +  +   +   +G
Sbjct: 497 KAYGNGYSSNGNTG 510

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
               N +I   A ADL++   V+P  A  IL             C     + +LC   ++
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKT---WTFGNFWCEFWTSIDVLCVTASI 270

Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
            TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L + L
Sbjct: 271 ETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 316

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  106 bits (266), Expect = 9e-26
 Identities = 59/311 (18%), Positives = 124/311 (39%), Gaps = 23/311 (7%)

Query: 29  VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
           +    L   W      L+   + +L   GN  +I+++     L+   N +I   A ADL+
Sbjct: 1   MGAELLSQQW-EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLV 59

Query: 89  VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
           V  +V+P  A +++ G          +C +   L +LC   ++ TL +IA++ Y+ +  P
Sbjct: 60  VGLLVVPFGATLVVRGT---WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSP 116

Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQ--------- 199
               +  +++   + +  +W +S L++ L  +     D   + +   +            
Sbjct: 117 FRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA 176

Query: 200 -GIIGSLF-FFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYI-- 255
             I  S+  F+IP++I   + +++  + +   +               +        +  
Sbjct: 177 YAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGI 236

Query: 256 ---MFIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAY 310
              +F + W+PF +V  V  F   + P   F    WL  + S +N ++YC  +  FR A+
Sbjct: 237 IMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAF 295

Query: 311 INLFHYCCCKT 321
             L  +     
Sbjct: 296 KRLLAFPRKAD 306

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
               N +I   A ADL+V  +V+P  A +++ G          +C +   L +LC   ++
Sbjct: 43  QTLTNLFITSLACADLVVGLLVVPFGATLVVRGT---WLWGSFLCELWTSLDVLCVTASI 99

Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
            TL +IA++ Y+ +  P    +  +++   + +  +W +S L++ L
Sbjct: 100 ETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL 145

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 60/291 (20%), Positives = 111/291 (38%), Gaps = 32/291 (10%)

Query: 50  LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAE 109
           L +LG   N   +   +    LR   N  +   A+ADL +       +    L G     
Sbjct: 48  LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG---YF 104

Query: 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWL 169
                 C+++ F   L   + +W+L ++A+E YV +C P   + F  ++H I+ V   W+
Sbjct: 105 VFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWV 163

Query: 170 VSILLTTLQFIY-----------KVGPDYCSKKVSYM-ELYQGIIGSLFFFIPIIITCIL 217
           +++       +              G DY +       E +   +  + F IP+I+    
Sbjct: 164 MALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223

Query: 218 YMKITYKVR-----LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVAS 272
           Y ++ + V+           + K          +M+      I F++ W+P+  V     
Sbjct: 224 YGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV------IAFLICWLPYAGVAFYIF 277

Query: 273 F--RHQITPSFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCK 320
                   P F  + A+ A + +  N V+Y + N+ FRN  +     CC K
Sbjct: 278 THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGK 326

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 386 ALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY 445
           A+ADL +       +    L G           C+++ F   L   + +W+L ++A+E Y
Sbjct: 81  AVADLFMVFGGFTTTLYTSLHG---YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERY 137

Query: 446 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482
           V +C P   +  F ++H I+ V   W++++       
Sbjct: 138 VVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPL 173

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 98.8 bits (246), Expect = 2e-22
 Identities = 59/315 (18%), Positives = 110/315 (34%), Gaps = 30/315 (9%)

Query: 50  LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAE 109
             ++G  GNG +I        L+   N +I   A +D   S  ++    +M ++   +  
Sbjct: 44  CGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFS--LVNGFPLMTISCFLKKW 101

Query: 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWL 169
                 C V  F+  +   +++ T+AMI+++ Y  +  P       S     + +I +WL
Sbjct: 102 IFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWL 161

Query: 170 VSILLTTLQFIY-----------KVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILY 218
            S+L                       DY S+  +        +  L FF PI+I    Y
Sbjct: 162 WSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTR-SNILCMFILGFFGPILIIFFCY 220

Query: 219 MKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYS-----------YIMFIVLWIPFCIV 267
             I   V    +  +     +   +         +              F++ W P+ +V
Sbjct: 221 FNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVV 280

Query: 268 MSVASF--RHQITPSFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHY--CCCKTT 322
             +A F     +TP    L    A + +  N ++Y +S+  FR A    F +   CC+  
Sbjct: 281 ALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFD 340

Query: 323 VTFSRRSRGDATRPS 337
              +   +   T   
Sbjct: 341 DKETEDDKDAETEIP 355

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 386 ALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY 445
           A +D   S  ++    +M ++   +        C V  F+  +   +++ T+AMI+++ Y
Sbjct: 77  AFSDFTFS--LVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRY 134

Query: 446 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482
             +  P       S     + +I +WL S+L      
Sbjct: 135 NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI 171

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 54/343 (15%), Positives = 123/343 (35%), Gaps = 30/343 (8%)

Query: 10  NSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIED 69
           +++ P  ++L  + +   +     +   W  V      T + V   VGN  ++  ++   
Sbjct: 2   DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61

Query: 70  HLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLV 129
            +R   N ++   A A+  ++     V+    +             C    F  +     
Sbjct: 62  RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH---NEWYYGLFYCKFHNFFPIAAVFA 118

Query: 130 TVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCS 189
           +++++  +A + Y+ +  P +     S +   + + +IW++++LL   Q  Y       S
Sbjct: 119 SIYSMTAVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLAFPQGYYSTTETMPS 176

Query: 190 KKV-----------SYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPV 238
           + V            Y ++Y   +  L +F+P+++    Y  +   +  A + P      
Sbjct: 177 RVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW-ASEIPGDSSDR 235

Query: 239 IFGWDYSL-----MLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA------WL 287
                 +      M+  +     F + W+PF I   +      +    +         WL
Sbjct: 236 YHEQVSAKRKVVKMM--IVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWL 293

Query: 288 ALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSR 330
           A+S +  N ++YC  N  FR  + + F  C   +   +     
Sbjct: 294 AMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEM 336

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
           N ++   A A+  ++     V+    +             C    F  +     +++++ 
Sbjct: 68  NYFLVNLAFAEASMAAFNTVVNFTYAVH---NEWYYGLFYCKFHNFFPIAAVFASIYSMT 124

Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478
            +A + Y+ +  P +     S +   + + +IW++++LL 
Sbjct: 125 AVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLA 162

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 79.8 bits (196), Expect = 4e-16
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 28/222 (12%)

Query: 28  TVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADL 87
              P   P        + +   ++VL  +GN  +  +V +  +L+   N ++   A AD+
Sbjct: 9   MGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADI 68

Query: 88  LVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 147
            V  + IP +       I          C       L+ +  ++++L  IA++ Y+ + +
Sbjct: 69  AVGVLAIPFAIT-----ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRI 123

Query: 148 PPECYTFFSKSHIILSVIMIWLVSILL-----------------TTLQFIYKVGPDYCSK 190
           P       + +     + + W++S  +                          G   C  
Sbjct: 124 PLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLF 183

Query: 191 KVSYMELYQGIIGSLF--FFIPIIITCILYMKITYKVRLARQ 230
           +      Y  +  + F    +P+++   +Y++I      AR+
Sbjct: 184 EDVVPMNYM-VYFNFFACVLVPLLLMLGVYLRI---FLAARR 221

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 50.5 bits (120), Expect = 7e-07
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 257 FIVLWIPFCIVMSVASFRHQITPS----FYYLAWLALSKSCINSVLYCISNRHFRNAYIN 312
           F + W+P  I+     F    + +     Y    L+ + S +N  +Y    R FR  +  
Sbjct: 404 FALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 463

Query: 313 LFHYCCCKTTVTFSRRSRG 331
           +      +    F      
Sbjct: 464 IIRSHVLRQQEPFKAHHHH 482

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
               N ++   A AD+ V  + IP +       I          C       L+ +  ++
Sbjct: 53  QNVTNYFVVSLAAADIAVGVLAIPFAIT-----ISTGFCAACHGCLFIACFVLVLTQSSI 107

Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
           ++L  IA++ Y+ + +P       + +     + + W++S  +
Sbjct: 108 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 150

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 76.3 bits (187), Expect = 5e-15
 Identities = 59/378 (15%), Positives = 123/378 (32%), Gaps = 18/378 (4%)

Query: 5   DFSSNNSLFPFTTELLTSAT--PMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMI 62
           D+  ++   P +   L+S         + +            L    L +    GNG + 
Sbjct: 1   DYKDDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVC 60

Query: 63  SSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFL 122
            +V+ E  L+   N  +   A+ADLLV+ +V+P    + + G         I C V   L
Sbjct: 61  MAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW--NFSRICCDVFVTL 118

Query: 123 TLLCSLVTVWTLAMIAMENYVRLCMP---PECYTFFSKSHIILSVIMIWLVSILLTTLQF 179
            ++    ++W L  I+++ Y  + MP          S   + L +  +W+++  ++    
Sbjct: 119 DVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL 178

Query: 180 IYKVGPDYCSKKVSYMELYQGIIGSLF-FFIPIIITCILYMKITYKV--RLARQNPSFKP 236
                    +        +  I  S+  F++P  +T ++Y +I Y V  +  R+N     
Sbjct: 179 FGFNTTGDPTVCSISNPDFV-IYSSVVSFYLPFGVTVLVYARI-YVVLKQRRRKNIFEML 236

Query: 237 PVIFGWDYSLMLT--NMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCI 294
            +  G    +       Y+  +  +L     +  + +     I  +   +     ++   
Sbjct: 237 RIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLF 296

Query: 295 NSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYT 354
           N  +        RNA           +     R +  +     G+  V            
Sbjct: 297 NQDVDAAVRGILRNAK----LKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ 352

Query: 355 SPQRGRDASKRTSSPYRS 372
                   +   S  Y  
Sbjct: 353 KRWDEAAVNLAKSRWYNQ 370

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 257 FIVLWIPFCIVMSVASFRHQITPS---FYYLAWLALSKSCINSVLYCISNRHFRNAYINL 313
           FIV W+PF +   + +       S   +    WL    S +N V+Y   N  FR A++ +
Sbjct: 410 FIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKI 469

Query: 314 FHYCCCKTTVTF 325
              C     V F
Sbjct: 470 LS-CGRPLEVLF 480

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
             T N  +   A+ADLLV+ +V+P    + + G         I C V   L ++    ++
Sbjct: 70  QTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW--NFSRICCDVFVTLDVMMCTASI 127

Query: 435 WTLAMIAMENYVRLCMP---PECYTFFSKSHIILSVIMIWLVSILLT 478
           W L  I+++ Y  + MP          S   + L +  +W+++  ++
Sbjct: 128 WNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVS 174

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 75.9 bits (186), Expect = 7e-15
 Identities = 43/231 (18%), Positives = 92/231 (39%), Gaps = 20/231 (8%)

Query: 5   DFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISS 64
           D +           L  + +     D +    +   V   ++ + + +    GN  +I++
Sbjct: 5   DDAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITA 64

Query: 65  VMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL 124
           +   + L+   N +I   A ADL++   V+P  A  IL  +          C    + ++
Sbjct: 65  IAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMW---TFGNFWCEF--WTSI 119

Query: 125 --LCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL-------- 174
             LC   ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L         
Sbjct: 120 DVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 179

Query: 175 ---TTLQFIYKVGPDYCSKKVSYMELYQGIIGSLF-FFIPIIITCILYMKI 221
               T Q       +         + Y  I  S+  F++P++I   +Y ++
Sbjct: 180 WYRATHQEAINCYAEETCCDFFTNQAYA-IASSIVSFYVPLVIMVFVYSRV 229

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 256 MFIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINL 313
            F + W+PF IV  V   +  +     +  L W+    S  N ++YC  +  FR A+  L
Sbjct: 416 TFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQEL 474

Query: 314 FHYCCCKTTVTFSRRSRGDATRPS 337
                       +  S    T   
Sbjct: 475 LCLRRSSLKAYGNGYSSNGNTGEQ 498

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSLV 432
               N +I   A ADL++   V+P  A  IL  +          C    + ++  LC   
Sbjct: 72  QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMW---TFGNFWCEF--WTSIDVLCVTA 126

Query: 433 TVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478
           ++ TL +IA++ Y  +  P +  +  +K+   + ++M+W+VS L +
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 172

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 37/216 (17%), Positives = 90/216 (41%), Gaps = 15/216 (6%)

Query: 21  TSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIA 80
           ++ +  +++  ++    +  V  +L+   LS++  +GN  ++ S+ +  HL+   N ++ 
Sbjct: 4   STDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLF 63

Query: 81  VEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSLVTVWTLAMIA 138
             A ADL++    + +  +  + G     P+  ++C +  +L L  + S  +V  L +I+
Sbjct: 64  SLACADLIIGVFSMNLYTLYTVIGYW---PLGPVVCDL--WLALDYVVSNASVMNLLIIS 118

Query: 139 MENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT--------TLQFIYKVGPDYCSK 190
            + Y  +  P       +     + +   W++S +L          +  +  V    C  
Sbjct: 119 FDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI 178

Query: 191 KVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVR 226
           +               F++P+II  +LY  I+   +
Sbjct: 179 QFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASK 214

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 257 FIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINLF 314
           FI+ W P+ +++ + +F     P+  +    WL    S IN   Y + N  F+  + +L 
Sbjct: 397 FIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456

Query: 315 HYCCCK 320
             C  K
Sbjct: 457 M-CHYK 461

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 374 IHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSL 431
           +    N ++   A ADL++    + +  +  + G     P+  ++C +  +L L  + S 
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYW---PLGPVVCDL--WLALDYVVSN 108

Query: 432 VTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
            +V  L +I+ + Y  +  P       +     + +   W++S +L
Sbjct: 109 ASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFIL 154

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 31/215 (14%), Positives = 74/215 (34%), Gaps = 23/215 (10%)

Query: 30  DPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLV 89
           D    P        + +   ++VL  +GN  +  +V +  +L+   N ++   A AD+ V
Sbjct: 21  DDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAV 80

Query: 90  SGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP 149
             + IP +  +               C       L+ +  ++++L  IA++ Y+ + +P 
Sbjct: 81  GVLAIPFAITISTG-----FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135

Query: 150 ECYTFFSKSHIILSVIMIWLVSILLTTLQFIY-----------------KVGPDYCSKKV 192
                 + +     + + W++S  +     +                    G   C  + 
Sbjct: 136 RYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFED 195

Query: 193 SYMELYQGIIGSLF-FFIPIIITCILYMKITYKVR 226
                Y           +P+++   +Y++I    R
Sbjct: 196 VVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 257 FIVLWIPFCIVMSVASFRHQITPS----FYYLAWLALSKSCINSVLYCISNRHFRNAYIN 312
           F + W+P  I+     F    + +     Y    L+ + S +N  +Y    R FR  +  
Sbjct: 363 FALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 422

Query: 313 LFHYCCCKTTVTFSRRSRG 331
           +      +    F      
Sbjct: 423 IIRSHVLRQQEPFKAHHHH 441

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
               N ++   A AD+ V  + IP +  +               C       L+ +  ++
Sbjct: 63  QNVTNYFVVSLAAADIAVGVLAIPFAITISTG-----FCAACHGCLFIACFVLVLTQSSI 117

Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
           ++L  IA++ Y+ + +P       + +     + + W++S  +
Sbjct: 118 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 160

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 72.4 bits (177), Expect = 8e-14
 Identities = 32/195 (16%), Positives = 86/195 (44%), Gaps = 17/195 (8%)

Query: 38  WNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVS 97
              +  +++ + + ++    N  ++ +V  E  L   GN YI   ++ADL+V  VV+P++
Sbjct: 6   PQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMN 65

Query: 98  AVMILAGIKQAEPIKEIMCHVQWFLTL--LCSLVTVWTLAMIAMENYVRLCMPPECYTFF 155
            + +L        +   +C    +L++  + S  +++++ ++ ++ Y  +  P     + 
Sbjct: 66  ILYLLMSKW---SLGRPLCLF--WLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR 120

Query: 156 SKSHIILSVIMIWLVSILLTTLQFIYK--------VGPDYCSKKVSYMELYQGIIGSLF- 206
           +K+    +++  W +S L       +            D C      +  ++ ++ ++  
Sbjct: 121 TKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFK-VMTAIIN 179

Query: 207 FFIPIIITCILYMKI 221
           F++P ++    Y KI
Sbjct: 180 FYLPTLLMLWFYAKI 194

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 247 MLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNR 304
                +    FI+ WIP+ I   V +F           +  WL    S +N ++Y + N 
Sbjct: 372 AKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNE 431

Query: 305 HFRNAYINLFHYCCCKTTVTF 325
           +F+  +  + H       + F
Sbjct: 432 NFKKTFKRILH-IRSGENLYF 451

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 22/106 (20%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 374 IHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSL 431
           +H  GN YI   ++ADL+V  VV+P++ + +L        +   +C    +L++  + S 
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKW---SLGRPLCLF--WLSMDYVAST 93

Query: 432 VTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
            +++++ ++ ++ Y  +  P     + +K+    +++  W +S L 
Sbjct: 94  ASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLW 139

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 67.2 bits (163), Expect = 4e-12
 Identities = 31/224 (13%), Positives = 81/224 (36%), Gaps = 9/224 (4%)

Query: 6   FSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSV 65
             S+ S +     ++        ++ S    +  ++  ++    +     + N +++ ++
Sbjct: 30  HRSSVSDYVNYDIIVRHYNYTGKLNISADKENSIKLTSVVFIL-ICCFIILENIFVLLTI 88

Query: 66  MIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLL 125
                  R    +I   AL+DLL          +           +      ++     +
Sbjct: 89  WKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTY----KLTPAQWFLREGSMFV 144

Query: 126 CSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI---YK 182
               +V++L  IA+E Y+ + +  + +   +   + L +   W++S++L  L  +     
Sbjct: 145 ALSASVFSLLAIAIERYITM-LKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI 203

Query: 183 VGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVR 226
                CS  +     +  +  +  F + ++   ILY +I   VR
Sbjct: 204 SALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVR 247

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 242 WDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA----WLALSKSCINSV 297
            + +L+ T +    +FI  W P  I++ +       T    + A     LA+  S  N +
Sbjct: 415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPI 474

Query: 298 LYCISNRHFRNAYINLFHYCCCK 320
           +Y ++N+  R A+I +       
Sbjct: 475 IYTLTNKEMRRAFIRIMGRPLEV 497

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
           H     +I   AL+DLL          +           +      ++     +    +V
Sbjct: 95  HRPMYYFIGNLALSDLLAGVAYTANLLLSGATTY----KLTPAQWFLREGSMFVALSASV 150

Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
           ++L  IA+E Y+ + +  + +   +   + L +   W++S++L  L
Sbjct: 151 FSLLAIAIERYITM-LKMKLHNGSNNFRLFLLISACWVISLILGGL 195

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 51/323 (15%), Positives = 103/323 (31%), Gaps = 31/323 (9%)

Query: 5   DFSSNNSLFPFTTELLTSATPMDTVDPSTLP---YDWNRVARLLITTGLS---VLGSVGN 58
           D  +   +  +T++  T        D    P    +     ++ + T  S   + G VGN
Sbjct: 7   DAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGN 66

Query: 59  GYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHV 118
           G +I  +  +  LR   + Y    ++ADLL   + +P  AV  +A           +C  
Sbjct: 67  GLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVAN----WYFGNFLCKA 121

Query: 119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQ 178
              +  +    +VW LA I+++ Y+ +                +  + +W+ ++LLT   
Sbjct: 122 VHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181

Query: 179 FIY-----KVGPDYCSKK------VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRL 227
           FI+           C +       V   +    ++G     +P I+    Y  I  K+  
Sbjct: 182 FIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVG---LILPGIVILSCYCIIISKLSH 238

Query: 228 ARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVL------WIPFCIVMSVASFRHQITPSF 281
           +  N      +  G    +       Y + I         +         +         
Sbjct: 239 SGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVI 298

Query: 282 YYLAWLALSKSCINSVLYCISNR 304
                  L    +++ +  I   
Sbjct: 299 TKDEAEKLFNQDVDAAVRGILRN 321

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 26/234 (11%)

Query: 52  VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
           V+G  GN  ++  ++    ++   N YI   ALAD L +   +P  +V  L G     P 
Sbjct: 29  VVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT-STLPFQSVNYLMG---TWPF 84

Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
             I+C +   +       +++TL  ++++ Y+ +C P +   F +  +  +  +  W++S
Sbjct: 85  GNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILS 144

Query: 172 ILLTTLQFIYKV----------GPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKI 221
             +                      +      +  L +  +    F +P++I  + Y  +
Sbjct: 145 SAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLM 204

Query: 222 TYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRH 275
             +++  R                         +        +  +        
Sbjct: 205 ILRLKSVRNIFEMLRIDEGLR------------LKIYKNTEGYYTIGIGHLLTK 246

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 255 IMFIVLWIPFCIVMSVASFRHQITPSFYYLAW-----LALSKSCINSVLYCISNRHFRNA 309
            +FIV W P  I + + +       +F  ++W     L  + SC+N VLY   + +F+  
Sbjct: 390 AVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRC 449

Query: 310 YINLFHYCCCKT 321
                 +C   +
Sbjct: 450 ---FREFCIPTS 458

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 58/415 (13%), Positives = 120/415 (28%), Gaps = 115/415 (27%)

Query: 14  PFTTELLTSATPMDTV-DPSTL-PYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHL 71
           P+   LL     +  V +      ++ +   ++L+TT    +    +    + + ++ H 
Sbjct: 242 PYENCLLV----LLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 72  RRRGNTYIAVEALADLLVSGVVI-----PVSAVMI----LAGIKQAEPIKEIMCHVQWFL 122
                T    E    LL+  +       P   +      L+ I  AE I++ +     + 
Sbjct: 296 M----TLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWK 348

Query: 123 TLLCSLVTVWTLAMIAMENYVRLCMPPE---CY---TFFSKS-HIILSVIMI-WLVSILL 174
            + C       L  I +E+ + +  P E    +   + F  S HI   ++ + W   I  
Sbjct: 349 HVNC-----DKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 175 TTLQFIYK------VGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKI--TYKVR 226
             +  + K      V        +S   +Y      L   + +     L+  I   Y + 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIY------LELKVKLENEYALHRSIVDHYNIP 456

Query: 227 LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAW 286
               +    PP +    Y       YS+I                          ++L  
Sbjct: 457 KTFDSDDLIPPYLDQ--YF------YSHIG-------------------------HHLKN 483

Query: 287 LALSKSCINSVLYCISNRHFRNAYINLFHYCCCK-TTVTFSRRSRGDATRPSGDVRV--- 342
           +   +              FR  +++ F +   K    + +  + G        ++    
Sbjct: 484 IEHPE----------RMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 343 HIIPGYNMYSYTSPQRGRD--------ASKRTSSPYRSIIHI---TGNTYIAVEA 386
           +I      Y     +                  S Y  ++ I     +  I  EA
Sbjct: 533 YICDNDPKYE----RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	100.0
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	100.0
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	100.0
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	100.0
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	100.0
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	100.0
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	100.0
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	100.0
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	100.0
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	100.0
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	100.0
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	100.0
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	100.0
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	100.0
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	100.0
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	100.0
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	100.0
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.68
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.63
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.63
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.62
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.61
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.6
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.59
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.59
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.59
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.58
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.57
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.57
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.56
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.56
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.56
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.55
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.54
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.53
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.57
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	98.45
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.37
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	97.31
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	94.73

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=1e-44  Score=372.76  Aligned_cols=282  Identities=21%  Similarity=0.292  Sum_probs=221.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccc---cchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccc
Q psy11022         35 PYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLR---RRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI  111 (492)
Q Consensus        35 ~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr---~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~  111 (492)
                      .+.+..++..+++.+++++|++||+++++++.++|++|   +++|+|++|||++|++.+++.+|+.+....... ..|.+
T Consensus        27 ~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~-~~w~~  105 (510)
T 4grv_A           27 TDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVH-HPWAF  105 (510)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-SSCSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEh
Confidence            34566788889999999999999999999998877655   678999999999999999899999887655432 25999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc--------
Q psy11022        112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV--------  183 (492)
Q Consensus       112 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~--------  183 (492)
                      |+.+|++..++...+..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|+++...        
T Consensus       106 g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~  185 (510)
T 4grv_A          106 GDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADG  185 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999886421        


Q ss_pred             ---ccccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------------------
Q psy11022        184 ---GPDYCSKKVSY--MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQN---------------------------  231 (492)
Q Consensus       184 ---~~~~C~~~~~~--~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~---------------------------  231 (492)
                         ....|...++.  ...+..+..++.+++|+++++++|.+|+++++++.+.                           
T Consensus       186 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (510)
T 4grv_A          186 THPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIG  265 (510)
T ss_dssp             CCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETT
T ss_pred             CCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccc
Confidence               11235544432  3455666667889999999999999999999753210                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        232 --------------------------------------------------------------------------------  231 (492)
Q Consensus       232 --------------------------------------------------------------------------------  231 (492)
                                                                                                      
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  345 (510)
T 4grv_A          266 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  345 (510)
T ss_dssp             EECCCSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCC
Confidence                                                                                            


Q ss_pred             -----------------------------------------------CCCCCCcccchhhHHHHHHHHHHHHHHHHhHhH
Q psy11022        232 -----------------------------------------------PSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPF  264 (492)
Q Consensus       232 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~  264 (492)
                                                                     .+.+..+..++|+|++|++++++++|++||+|+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf  425 (510)
T 4grv_A          346 VAGFTNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPY  425 (510)
T ss_dssp             HTTCHHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                           000111223567899999999999999999999


Q ss_pred             HHHHHHHhccCCc----------chHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccc
Q psy11022        265 CIVMSVASFRHQI----------TPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYC  317 (492)
Q Consensus       265 ~i~~~~~~~~~~~----------~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~  317 (492)
                      .+..++..+.+..          .....+..||.|+||++||+||+++|++||++++++++++
T Consensus       426 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~  488 (510)
T 4grv_A          426 HVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACL  488 (510)
T ss_dssp             HHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC--------
T ss_pred             HHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Confidence            9999887762211          1234456789999999999999999999999999999643

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=100.00  E-value=8.9e-42  Score=350.32  Aligned_cols=277  Identities=20%  Similarity=0.308  Sum_probs=230.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc
Q psy11022         35 PYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI  114 (492)
Q Consensus        35 ~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~  114 (492)
                      ..+.......+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.+++.+|+.+.....+   .|.+|+.
T Consensus        35 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~---~w~~~~~  111 (500)
T 2rh1_A           35 RDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK---MWTFGNF  111 (500)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SCCSHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcCCcc
Confidence            3444567788899999999999999999999999999999999999999999999988999988877765   4899999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-c-----ccccc
Q psy11022        115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-V-----GPDYC  188 (492)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-~-----~~~~C  188 (492)
                      .|++..++..++..+|++++++||+|||+||++|++|++.++++++..+++++|+++++++++++... .     +...|
T Consensus       112 ~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c  191 (500)
T 2rh1_A          112 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINC  191 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecccccCccee
Confidence            99999999999999999999999999999999999999999999999999999999999986444321 1     11234


Q ss_pred             cccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------C--CC------------
Q psy11022        189 SKKV-----SYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQN---------------P--SF------------  234 (492)
Q Consensus       189 ~~~~-----~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~---------------~--~~------------  234 (492)
                      ...+     .....|.....++.+++|+++++++|.+|++.+||+.++               .  ..            
T Consensus       192 ~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (500)
T 2rh1_A          192 YAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTK  271 (500)
T ss_dssp             HHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTCCEEEEEECTTSCEEEETTEEEES
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCCCCCCC
Confidence            3321     123567777777889999999999999999999886543               0  00            


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        235 --------------------------------------------------------------------------------  234 (492)
Q Consensus       235 --------------------------------------------------------------------------------  234 (492)
                                                                                                      
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (500)
T 2rh1_A          272 SPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFT  351 (500)
T ss_dssp             CSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cccccccccccccccCCCCCCccchhhhhhcccCCccccccccccCCCCCCCCCcccccccchhhcccCCCCcccccccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------CCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022        235 -------------------------------------------KPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA  271 (492)
Q Consensus       235 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~  271 (492)
                                                                 +..+..++|+|++|++++++++|++||+|+.+..++.
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~  431 (500)
T 2rh1_A          352 NSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVH  431 (500)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhcccccccccccccccccCCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                       0000123688999999999999999999999999888


Q ss_pred             hcc--CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        272 SFR--HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       272 ~~~--~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      .+.  ..+..+..+..|+.++||++||+||++ |++||++++++++
T Consensus       432 ~~~~~~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~  476 (500)
T 2rh1_A          432 VIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC  476 (500)
T ss_dssp             HHSTTSSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTT
T ss_pred             HHcCCcccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHh
Confidence            773  345566777889999999999999996 9999999999995

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=100.00  E-value=3.4e-41  Score=343.04  Aligned_cols=276  Identities=18%  Similarity=0.316  Sum_probs=240.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022         37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC  116 (492)
Q Consensus        37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  116 (492)
                      +....+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.+++.+|..+.....+   .|.+|+..|
T Consensus        20 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~---~~~~~~~~C   96 (467)
T 3uon_A           20 TFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIG---YWPLGPVVC   96 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS---SCCSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CccCCcchH
Confidence            34567889999999999999999999999999999999999999999999999989999988877766   489999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--------cccccc
Q psy11022        117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--------VGPDYC  188 (492)
Q Consensus       117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--------~~~~~C  188 (492)
                      ++..++..++..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|+++..        .+...|
T Consensus        97 ~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C  176 (467)
T 3uon_A           97 DLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGEC  176 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999887641        234568


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------------------------
Q psy11022        189 SKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQN-------------------------------------  231 (492)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~-------------------------------------  231 (492)
                      ...+.....+.....++.+++|+++++++|.+|++.++++.++                                     
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (467)
T 3uon_A          177 YIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLN  256 (467)
T ss_dssp             CCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHSCCEEEEEECTTSCEEEETTEECCCCSSHH
T ss_pred             eeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccceeeccchhhcccccCcccccCCccc
Confidence            8877666778888888999999999999999999999876431                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        232 --------------------------------------------------------------------------------  231 (492)
Q Consensus       232 --------------------------------------------------------------------------------  231 (492)
                                                                                                      
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (467)
T 3uon_A          257 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRM  336 (467)
T ss_dssp             HHHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHGGGHHHHHH
T ss_pred             ccccccccccccCCCCcccccccccccccccchhhcccccCCCCCccccccccccccccccceeeccccCCCccccccch
Confidence                                                                                            


Q ss_pred             -----------------------------------CCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccC-
Q psy11022        232 -----------------------------------PSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRH-  275 (492)
Q Consensus       232 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~-  275 (492)
                                                         ......+..++|+|+++++++++++|++||+|+.+..++..+.+ 
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~  416 (467)
T 3uon_A          337 LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP  416 (467)
T ss_dssp             HHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred             hhhcCccccccccccccccCCCCcccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence                                               00011112346789999999999999999999999999887733 


Q ss_pred             -CcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        276 -QITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       276 -~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                       .......+..++.++|+++||+||+++|++||++++++++
T Consensus       417 ~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~  457 (467)
T 3uon_A          417 CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM  457 (467)
T ss_dssp             TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHh
Confidence             4566677788999999999999999999999999999995

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=100.00  E-value=3.1e-40  Score=325.03  Aligned_cols=280  Identities=17%  Similarity=0.335  Sum_probs=231.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc
Q psy11022         35 PYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI  114 (492)
Q Consensus        35 ~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~  114 (492)
                      .+++......+++.+++++|++||+++++++.++|++|+++|++++|||++|++.+++.+|..+.....+   .|.+|+.
T Consensus        27 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~---~~~~~~~  103 (364)
T 2ks9_A           27 QPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN---EWYYGLF  103 (364)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT---SCSSCHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccchHH
Confidence            3445555668899999999999999999999999999999999999999999999988899887766654   4889999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----cccccc
Q psy11022        115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYCS  189 (492)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C~  189 (492)
                      .|++..++...+..+|.+++++||+|||+||++|++|+  .+++++...++++|+++++.++|...+..     +...|.
T Consensus       104 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~  181 (364)
T 2ks9_A          104 YCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCM  181 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCCBCTTCSSBC
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhheecCCCCEEe
Confidence            99999999999999999999999999999999998875  58888899999999999999998775432     234587


Q ss_pred             cccccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCcccchhhHHHHHHHHHHHHHHHHh
Q psy11022        190 KKVSYM------ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFK--PPVIFGWDYSLMLTNMYSYIMFIVLW  261 (492)
Q Consensus       190 ~~~~~~------~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~i~~  261 (492)
                      ..++..      ..|.....++.+++|++++.++|.+|.+.++|++++.+..  .+++.++++|++++++.++++|++||
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~  261 (364)
T 2ks9_A          182 IEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICW  261 (364)
T ss_dssp             CCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHhhhhHHHHHHHHHHHHHHHH
Confidence            664321      3566666778899999999999999999998765433222  22334567899999999999999999


Q ss_pred             HhHHHHHHHHhccCC------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccccc
Q psy11022        262 IPFCIVMSVASFRHQ------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCC  319 (492)
Q Consensus       262 ~P~~i~~~~~~~~~~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~  319 (492)
                      +|+.+..++......      .........++.++|+++||+||++++++||++++++++++++
T Consensus       262 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~  325 (364)
T 2ks9_A          262 LPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF  325 (364)
T ss_dssp             HHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCC
Confidence            999998887665221      2334556678899999999999999999999999999975443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=100.00  E-value=1.1e-40  Score=326.01  Aligned_cols=280  Identities=19%  Similarity=0.278  Sum_probs=234.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccc
Q psy11022         31 PSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEP  110 (492)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~  110 (492)
                      +....+++...+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++..+|..+.....+   .|.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~---~~~  105 (349)
T 1u19_A           29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG---YFV  105 (349)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SCT
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcC---eee
Confidence            33445667778888999999999999999999999999999999999999999999999988899888776655   388


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc------c
Q psy11022        111 IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV------G  184 (492)
Q Consensus       111 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~  184 (492)
                      +|+..|++..++...+..+|.+++++||+|||+||++|++|++ .+++++...++++|+++++.++|++....      .
T Consensus       106 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~  184 (349)
T 1u19_A          106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGM  184 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETT
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHHHheeeeeccCC
Confidence            9999999999999999999999999999999999999998876 78999999999999999999999876421      2


Q ss_pred             ccccccccc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHH
Q psy11022        185 PDYCSKKVS------YMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFI  258 (492)
Q Consensus       185 ~~~C~~~~~------~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  258 (492)
                      ...|...+.      ....+.....++.+++|++++.++|.+|++++||++++.+ +..++.++++|.+++++.++++|+
T Consensus       185 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~f~  263 (349)
T 1u19_A          185 QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ-ESATTQKAEKEVTRMVIIMVIAFL  263 (349)
T ss_dssp             TTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC-SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhhHHHHHHHHHHHHHHHHHHH
Confidence            335765532      2345556666778899999999999999999988755332 334455678899999999999999


Q ss_pred             HHhHhHHHHHHHHhcc---CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        259 VLWIPFCIVMSVASFR---HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       259 i~~~P~~i~~~~~~~~---~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      +||+|+.+..++....   ........+..++.++|+++||+||++++++||++++++++
T Consensus       264 i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~  323 (349)
T 1u19_A          264 ICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC  323 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhc
Confidence            9999999887776552   22334556667889999999999999999999999999984

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=100.00  E-value=1e-40  Score=342.83  Aligned_cols=282  Identities=20%  Similarity=0.277  Sum_probs=234.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccc
Q psy11022         34 LPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKE  113 (492)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~  113 (492)
                      ...+....+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.+ +.+|..+.....+    |.+|+
T Consensus        42 ~~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~~----~~~~~  116 (502)
T 3odu_A           42 ENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVAN----WYFGN  116 (502)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHTC----CCSHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC----CcCCc
Confidence            344666888999999999999999999999999999999999999999999999996 7889888776653    89999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----ccccc
Q psy11022        114 IMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYC  188 (492)
Q Consensus       114 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C  188 (492)
                      ..|++..++..++..++++++++||+|||+||++|++|+..++++++..+++++|++++++++|++++..     +...|
T Consensus       117 ~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~C  196 (502)
T 3odu_A          117 FLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYIC  196 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECSSSEEE
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccCCceEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999887532     33457


Q ss_pred             cccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CC----------------------
Q psy11022        189 SKKVSY---MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPS--------FK----------------------  235 (492)
Q Consensus       189 ~~~~~~---~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~--------~~----------------------  235 (492)
                      ...++.   ...+.....++.+++|+++++++|.+|++.++|++++.+        .+                      
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (502)
T 3odu_A          197 DRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS  276 (502)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEEECS
T ss_pred             eecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccccCCCccccccccccccCcC
Confidence            755443   233455556788899999999999999999998644310        00                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        236 --------------------------------------------------------------------------------  235 (492)
Q Consensus       236 --------------------------------------------------------------------------------  235 (492)
                                                                                                      
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (502)
T 3odu_A          277 PSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTN  356 (502)
T ss_dssp             SCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ccccccchhhhcccCcchhhhhhccccccchhhcccccccccccCccccccccCCCCCCcchhhhhhhhhchhhcccCcc
Confidence                                                                                            


Q ss_pred             --------------------------------------------CCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022        236 --------------------------------------------PPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA  271 (492)
Q Consensus       236 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~  271 (492)
                                                                  ...+.++|+|+++++++++++|++||+|+.+..++.
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~  436 (502)
T 3odu_A          357 SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISID  436 (502)
T ss_dssp             HHHHHHHTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhchhhhhccccccccccccCcchhhhccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                                                        002234578999999999999999999999988877


Q ss_pred             hcc------------CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccccC
Q psy11022        272 SFR------------HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCK  320 (492)
Q Consensus       272 ~~~------------~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~~  320 (492)
                      .+.            .....+..+..++.++|+++||+||+++|++||+++++++++++|+
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~  497 (502)
T 3odu_A          437 SFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPL  497 (502)
T ss_dssp             HHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSCSSC
T ss_pred             HHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccCCch
Confidence            651            1122334466789999999999999999999999999999755443

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=334.95  Aligned_cols=276  Identities=18%  Similarity=0.360  Sum_probs=236.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhh
Q psy11022         40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQ  119 (492)
Q Consensus        40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~  119 (492)
                      ..+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.+++.+|..+.....+   .|.+|+..|++.
T Consensus         8 ~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~---~~~~~~~~C~~~   84 (452)
T 3rze_A            8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS---KWSLGRPLCLFW   84 (452)
T ss_dssp             -CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSS---SCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccCCchhHhHH
Confidence            45667889999999999999999999999999999999999999999999989999998887765   489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc--------cccccccc
Q psy11022        120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV--------GPDYCSKK  191 (492)
Q Consensus       120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~--------~~~~C~~~  191 (492)
                      .++..++..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|.+.+..        ....|..+
T Consensus        85 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  164 (452)
T 3rze_A           85 LSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETD  164 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-------CCSSSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCeecCC
Confidence            9999999999999999999999999999999999999999999999999999999888664321        34468777


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------------------------------
Q psy11022        192 VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNP---------------------------------------  232 (492)
Q Consensus       192 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~---------------------------------------  232 (492)
                      +.....+.....++.+++|+++++++|.+|++.+|+++++.                                       
T Consensus       165 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (452)
T 3rze_A          165 FYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK  244 (452)
T ss_dssp             CTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHCEEEEEEECTTSCEEEEETEECSSCSSHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhhhhcccCCcccccccccccccCCCCCccc
Confidence            66667788888889999999999999999999998753210                                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        233 --------------------------------------------------------------------------------  232 (492)
Q Consensus       233 --------------------------------------------------------------------------------  232 (492)
                                                                                                      
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (452)
T 3rze_A          245 SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ  324 (452)
T ss_dssp             HHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHT
T ss_pred             ccccCCCCCCCCccccCCcccchhcCCCcccccCcccccccCCcccCCCccccccccccccccCCCCCCccccCcchhhh
Confidence                                                                                            


Q ss_pred             ---------------------------------CCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhc--cCCc
Q psy11022        233 ---------------------------------SFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASF--RHQI  277 (492)
Q Consensus       233 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~--~~~~  277 (492)
                                                       ..+...+.++|+|+++++++++++|++||+|+.+..++..+  ....
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~~  404 (452)
T 3rze_A          325 KRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN  404 (452)
T ss_dssp             TCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred             cCCccccccccCCccCCCCCcccchhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccc
Confidence                                             00011234478899999999999999999999999888776  3344


Q ss_pred             chHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022        278 TPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC  318 (492)
Q Consensus       278 ~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~  318 (492)
                      .....+..++.++|+++||+||+++|++||+++++++++++
T Consensus       405 ~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~  445 (452)
T 3rze_A          405 EHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRS  445 (452)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhcc
Confidence            56677888999999999999999999999999999996443

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=100.00  E-value=1.2e-39  Score=335.98  Aligned_cols=273  Identities=17%  Similarity=0.195  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhh
Q psy11022         40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQ  119 (492)
Q Consensus        40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~  119 (492)
                      ..+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.+++.+|..+...    ...|.++...|++.
T Consensus        63 ~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~~----~~~~~~~~~~c~~~  138 (520)
T 3v2y_A           63 IKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSG----ATTYKLTPAQWFLR  138 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHSG----GGGTTSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHcc----ccceeeCccccchH
Confidence            36788899999999999999999999999999999999999999999999988888776552    12478899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc---ccccccccccccch
Q psy11022        120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK---VGPDYCSKKVSYME  196 (492)
Q Consensus       120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~---~~~~~C~~~~~~~~  196 (492)
                      .++..++..+|++++++||+|||+||+ |++|+..++++++..+++++|++++++++|+++..   .+...|...++...
T Consensus       139 ~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~~~~~~  217 (520)
T 3v2y_A          139 EGSMFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYH  217 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCTTCGGGBCSSSTTBB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHeeccccCCCcccccCCccc
Confidence            999999999999999999999999999 99999999999999999999999999998887643   24457887765444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cCCC-----C---------------------------
Q psy11022        197 LYQGIIGSLFFFIPIIITCILYMKITYKVRLAR----------QNPS-----F---------------------------  234 (492)
Q Consensus       197 ~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~----------~~~~-----~---------------------------  234 (492)
                      .+.....++.+++|+++++++|.+|++.+++++          .+.+     .                           
T Consensus       218 ~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~t~~~g~~~~~~~~~~~~~~~~~~~  297 (520)
T 3v2y_A          218 KHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKA  297 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCEECSSSSEEETTTEECCSSSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccccceeEecccccccccccccccchhhhH
Confidence            445555567799999999999999999999875          0000     0                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        235 --------------------------------------------------------------------------------  234 (492)
Q Consensus       235 --------------------------------------------------------------------------------  234 (492)
                                                                                                      
T Consensus       298 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  377 (520)
T 3v2y_A          298 IGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEA  377 (520)
T ss_dssp             HTSCCTTCCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHSCHHHHHHHHHHHHHSCHHHHHTCHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCcccHHHhhhHHHhccccccccccccccCCCcCCccchhhhHHHHHHHHccCCCcccccccccccccccchhhH
Confidence                                                                                            


Q ss_pred             ------------------------------CCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccC----CcchH
Q psy11022        235 ------------------------------KPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRH----QITPS  280 (492)
Q Consensus       235 ------------------------------~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~----~~~~~  280 (492)
                                                    ...++.++++|+++++++++++|++||+|+.+..++..+..    .....
T Consensus       378 ~~~~~~s~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~  457 (520)
T 3v2y_A          378 AVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFR  457 (520)
T ss_dssp             HHHHHHSHHHHHSHHHHHHHHHHHHHCSGGGTCSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTS
T ss_pred             hhhhhccchhhhcccchhhHHHHhhcchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHH
Confidence                                          00011225788999999999999999999999999877632    23344


Q ss_pred             HHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccc
Q psy11022        281 FYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYC  317 (492)
Q Consensus       281 ~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~  317 (492)
                      ..+..++.++||++||+||+++|++||++++++++++
T Consensus       458 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  494 (520)
T 3v2y_A          458 AEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRP  494 (520)
T ss_dssp             CHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence            5566789999999999999999999999999998643

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=100.00  E-value=6.9e-40  Score=334.74  Aligned_cols=273  Identities=21%  Similarity=0.342  Sum_probs=229.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccch
Q psy11022         38 WNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCH  117 (492)
Q Consensus        38 ~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~  117 (492)
                      ....+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.+++.+|..+.....+.  .|.++...|+
T Consensus        36 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~--~~~~~~~~C~  113 (481)
T 3pbl_A           36 RPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG--VWNFSRICCD  113 (481)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTS--CCCSCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccccCcchhh
Confidence            34567788899999999999999999999999999999999999999999999899998887666532  4889999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---ccccchhhHHhHhhHHHHHHHHHhhhhhhhc---ccccccccc
Q psy11022        118 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPEC---YTFFSKSHIILSVIMIWLVSILLTTLQFIYK---VGPDYCSKK  191 (492)
Q Consensus       118 ~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~---~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~---~~~~~C~~~  191 (492)
                      +..++..++..++++++++||+|||+||++|++|   ....+++++..+++++|++++++++|+++..   .+...|...
T Consensus       114 ~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~C~~~  193 (481)
T 3pbl_A          114 VFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDPTVCSIS  193 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSSTTCCSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccccc
Confidence            9999999999999999999999999999999998   5678889999999999999999999887643   233457654


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------------------------------
Q psy11022        192 VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPS--------------------------------------  233 (492)
Q Consensus       192 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~--------------------------------------  233 (492)
                      +   ..+.....++.+++|+++++++|.+|++.+++++++..                                      
T Consensus       194 ~---~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (481)
T 3pbl_A          194 N---PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA  270 (481)
T ss_dssp             C---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCEECSSSCEEETTTEEEESSSCHHH
T ss_pred             C---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccccCcccceeecccccccCCccccc
Confidence            3   44677777889999999999999999999998654310                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        234 --------------------------------------------------------------------------------  233 (492)
Q Consensus       234 --------------------------------------------------------------------------------  233 (492)
                                                                                                      
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (481)
T 3pbl_A          271 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRML  350 (481)
T ss_dssp             HHHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCcccchhccCCCceeccCCchhcccCCcccccccccccCccCccccccccccchhccccccccCCCCCCCcccccchh
Confidence                                                                                            


Q ss_pred             ------------------------------------CCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhcc---
Q psy11022        234 ------------------------------------FKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFR---  274 (492)
Q Consensus       234 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~---  274 (492)
                                                          .+.....++|+|+++++++++++|++||+|+.+..++....   
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~  430 (481)
T 3pbl_A          351 QQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTC  430 (481)
T ss_dssp             HTTCHHHHHHHHHTSHHHHHSHHHHHHHHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             ccccccccchhhhccccccCCcccccccceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccc
Confidence                                                00011123589999999999999999999999999988762   


Q ss_pred             CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        275 HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       275 ~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ........+..++.++|+++||+||+++|++||++++++++
T Consensus       431 ~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~  471 (481)
T 3pbl_A          431 HVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS  471 (481)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHh
Confidence            34456667788999999999999999999999999999995

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=337.90  Aligned_cols=277  Identities=14%  Similarity=0.250  Sum_probs=215.2

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccccc
Q psy11022         36 YDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM  115 (492)
Q Consensus        36 ~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~  115 (492)
                      .+....+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.++ .+|..+.......  .|.+|+..
T Consensus        16 ~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~--~~~~~~~~   92 (484)
T 3vw7_A           16 SSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGS--DWQFGSEL   92 (484)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTS--CCCSCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--CcccchhH
Confidence            34557788999999999999999999999999999999999999999999999984 5666655554432  48999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-------ccccc
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-------GPDYC  188 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-------~~~~C  188 (492)
                      |++..++..++..+|++++++||+|||+||++|++|...++++++..+++++|++++++++|+++...       ....|
T Consensus        93 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~C  172 (484)
T 3vw7_A           93 CRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGITTC  172 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTTEEEE
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999876432       22468


Q ss_pred             ccccccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------CC------------
Q psy11022        189 SKKVSYM------ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPS---------------FK------------  235 (492)
Q Consensus       189 ~~~~~~~------~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~---------------~~------------  235 (492)
                      ...++..      ..+.....++.+++|+++++++|.+|++.+++++++.+               .+            
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~  252 (484)
T 3vw7_A          173 HDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLT  252 (484)
T ss_dssp             SSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHCCEEEEEECTTSCEEEETTEEEE
T ss_pred             eccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHhhhhccchhhhhccccccceeeecccccc
Confidence            7664331      12555566788999999999999999999987653100               00            


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        236 --------------------------------------------------------------------------------  235 (492)
Q Consensus       236 --------------------------------------------------------------------------------  235 (492)
                                                                                                      
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  332 (484)
T 3vw7_A          253 KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF  332 (484)
T ss_dssp             SSSCHHHHHHHHHHHHTSCCSSBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcchhcccccccccccccCCCCCCcccccccccccccccccccccccccCcccccccccccchhhccccccCccccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------------------CCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy11022        236 ---------------------------------------------PPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSV  270 (492)
Q Consensus       236 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~  270 (492)
                                                                   ...+.++++|++|++++++++|++||+|+.+..++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~  412 (484)
T 3vw7_A          333 TNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFIICFGPTNVLLIA  412 (484)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hhhhhhhhccchhhhhhhhhhhhhhccCcccccCccceeecchhccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                                                         00133456889999999999999999999999988


Q ss_pred             Hhcc---CCc----chHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        271 ASFR---HQI----TPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       271 ~~~~---~~~----~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ..+.   ...    .....+..++.++|+++||+||+++|++||++++++++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~  464 (484)
T 3vw7_A          413 HYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILC  464 (484)
T ss_dssp             HHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC---------
T ss_pred             HHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHh
Confidence            7542   111    23445677899999999999999999999999999985

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=100.00  E-value=3.4e-40  Score=337.51  Aligned_cols=279  Identities=15%  Similarity=0.220  Sum_probs=230.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022         37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC  116 (492)
Q Consensus        37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  116 (492)
                      .....+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.+++.+|..+....     .|.++...|
T Consensus        18 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~-----~~~~~~~~C   92 (488)
T 3eml_A           18 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST-----GFCAACHGC   92 (488)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT-----CCEECHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccccchHH
Confidence            334668889999999999999999999999999999999999999999999999899998776332     378888999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc----------ccc
Q psy11022        117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV----------GPD  186 (492)
Q Consensus       117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~----------~~~  186 (492)
                      ++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++...          ...
T Consensus        93 ~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~  172 (488)
T 3eml_A           93 LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQ  172 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC-------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999988876321          123


Q ss_pred             ccccccc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------------------
Q psy11022        187 YCSKKVS--------YMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSF------------------------  234 (492)
Q Consensus       187 ~C~~~~~--------~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~------------------------  234 (492)
                      .|...+.        ....+.....++.+++|+++++++|.+|++.++|+.++.+.                        
T Consensus       173 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (488)
T 3eml_A          173 GCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIG  252 (488)
T ss_dssp             SSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCEEEEEECTTSCEEEETT
T ss_pred             ccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccccchhhccccccceecccc
Confidence            4554321        11223344466888999999999999999999876432100                        


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        235 --------------------------------------------------------------------------------  234 (492)
Q Consensus       235 --------------------------------------------------------------------------------  234 (492)
                                                                                                      
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (488)
T 3eml_A          253 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  332 (488)
T ss_dssp             EEEESSSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHH
T ss_pred             ccCCCCccccccccccccCCCCCCCCCCChhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCCCCC
Confidence                                                                                            


Q ss_pred             -------------------------------------------------CCCcccchhhHHHHHHHHHHHHHHHHhHhHH
Q psy11022        235 -------------------------------------------------KPPVIFGWDYSLMLTNMYSYIMFIVLWIPFC  265 (492)
Q Consensus       235 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~  265 (492)
                                                                       ...++.++|+|+++++++++++|++||+|+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~P~~  412 (488)
T 3eml_A          333 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLH  412 (488)
T ss_dssp             HTTCHHHHHHHHTTCHHHHHHHHTTSHHHHHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcchhhhhccccccccCcccccCcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                                                             0001134678999999999999999999999


Q ss_pred             HHHHHHhcc----CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccccC
Q psy11022        266 IVMSVASFR----HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCK  320 (492)
Q Consensus       266 i~~~~~~~~----~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~~  320 (492)
                      ++.++..+.    ........+..++.++|+++||+||+++|++||+++++++++++++
T Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~  471 (488)
T 3eml_A          413 IINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR  471 (488)
T ss_dssp             HHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhcccc
Confidence            998887762    3345566777889999999999999999999999999999865554

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=100.00  E-value=1.3e-39  Score=331.13  Aligned_cols=276  Identities=19%  Similarity=0.352  Sum_probs=229.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc
Q psy11022         35 PYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI  114 (492)
Q Consensus        35 ~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~  114 (492)
                      +......+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.++. +|..+.....+   .|.+|+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~---~~~~~~~   87 (464)
T 4dkl_A           12 PSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMG---TWPFGNI   87 (464)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS---SCCSCSH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC---Ccccccc
Confidence            3445678899999999999999999999999999999999999999999999999855 88888777765   3899999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----cccccc
Q psy11022        115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYCS  189 (492)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C~  189 (492)
                      .|++..++..++..+|++++++||+|||+||++|++|++.++++++..+++++|++++++++|.++...     +...|.
T Consensus        88 ~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~c~  167 (464)
T 4dkl_A           88 LCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCT  167 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETTEEECC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccCCCceEE
Confidence            999999999999999999999999999999999999999999999999999999999999998876432     334566


Q ss_pred             ccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------------------------
Q psy11022        190 KKVSY-----MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQN---------------------------------  231 (492)
Q Consensus       190 ~~~~~-----~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~---------------------------------  231 (492)
                      ..+..     ...+.....++.+++|+++++++|.+|++++++++++                                 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (464)
T 4dkl_A          168 LTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKS  247 (464)
T ss_dssp             BCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHCCEEEEEECTTSCEEEETTEEEESS
T ss_pred             eecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccccccccCCCCCccccccccccCC
Confidence            55433     2335566667889999999999999999998765430                                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        232 --------------------------------------------------------------------------------  231 (492)
Q Consensus       232 --------------------------------------------------------------------------------  231 (492)
                                                                                                      
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (464)
T 4dkl_A          248 PSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTN  327 (464)
T ss_dssp             SCSHHHHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHTSCHHHHHHHHHHHHHHCHHHHHTCHH
T ss_pred             CccccccccccccccccccceecCCccccccccCCcccccccccCCCCCccccCcccccchhhhhccccCCCCCcccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------------CCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHh
Q psy11022        232 ---------------------------------------PSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVAS  272 (492)
Q Consensus       232 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~  272 (492)
                                                             ......++.++|+|++|++++++++|++||+|+.+..++..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~  407 (464)
T 4dkl_A          328 SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKA  407 (464)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhcccchhhcccccccccccCccccceeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                                                   00112234466789999999999999999999999999877


Q ss_pred             ccCC-----cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022        273 FRHQ-----ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLF  314 (492)
Q Consensus       273 ~~~~-----~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~  314 (492)
                      +...     ......+..++.++|+++||+||+++|++||+++++++
T Consensus       408 ~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc  454 (464)
T 4dkl_A          408 LITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFC  454 (464)
T ss_dssp             HSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHh
Confidence            6322     22233455679999999999999999999999999974

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=100.00  E-value=2.4e-40  Score=334.82  Aligned_cols=282  Identities=15%  Similarity=0.233  Sum_probs=228.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccc
Q psy11022         34 LPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKE  113 (492)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~  113 (492)
                      ..+.....+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.+++.+|..+....     .|..+.
T Consensus        25 ~~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~-----~~~~~~   99 (447)
T 4eiy_A           25 APPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST-----GFCAAC   99 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-----TCEEEH
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccCc
Confidence            344556778888999999999999999999999999999999999999999999999899998776332     367788


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhccc---------
Q psy11022        114 IMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVG---------  184 (492)
Q Consensus       114 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~---------  184 (492)
                      ..|++..++..++..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|+++....         
T Consensus       100 ~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~  179 (447)
T 4eiy_A          100 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKN  179 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988763211         


Q ss_pred             -ccccccccc-------c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------------------
Q psy11022        185 -PDYCSKKVS-------Y-MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSF---------------------  234 (492)
Q Consensus       185 -~~~C~~~~~-------~-~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~---------------------  234 (492)
                       ...|...+.       . ...+.....++.+++|+++++++|.+|++.+||+.++.++                     
T Consensus       180 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T 4eiy_A          180 HSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQV  259 (447)
T ss_dssp             HHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             ccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccchhh
Confidence             123443321       1 1122222234567999999999999999999886332100                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy11022        235 --------------------------------------------------------------------------------  234 (492)
Q Consensus       235 --------------------------------------------------------------------------------  234 (492)
                                                                                                      
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (447)
T 4eiy_A          260 KDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYL  339 (447)
T ss_dssp             HHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHH
T ss_pred             hccchhhhccCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccc
Confidence                                                                                            


Q ss_pred             -CCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhcc----CCcchHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022        235 -KPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFR----HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNA  309 (492)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~----~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~  309 (492)
                       +..++.++|+|++|++++++++|++||+|+.+..++....    ........+..++.++|+++||+||+++|++||++
T Consensus       340 ~~~~~~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~  419 (447)
T 4eiy_A          340 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT  419 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHH
Confidence             0011235678999999999999999999999998887762    33445666778999999999999999999999999


Q ss_pred             HHHHhcccccC
Q psy11022        310 YINLFHYCCCK  320 (492)
Q Consensus       310 ~~~~~~~~~~~  320 (492)
                      +++++++++++
T Consensus       420 ~~~~~~~~~~r  430 (447)
T 4eiy_A          420 FRKIIRSHVLR  430 (447)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHHhc
Confidence            99999766555

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=100.00  E-value=4.9e-39  Score=309.50  Aligned_cols=274  Identities=20%  Similarity=0.361  Sum_probs=227.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccch
Q psy11022         38 WNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCH  117 (492)
Q Consensus        38 ~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~  117 (492)
                      ..+....+++.+++++|++||+++++++.++|++|+++|++++|||++|++.++..+|..+.....+   .|.+|+..|+
T Consensus         9 ~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~---~~~~~~~~C~   85 (315)
T 4amj_A            9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLCE   85 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHS---SCCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcC---CeeccccHHH
Confidence            3467788899999999999999999999999999999999999999999999989999988777665   4899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc------cccccccc
Q psy11022        118 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV------GPDYCSKK  191 (492)
Q Consensus       118 ~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~~~~C~~~  191 (492)
                      +..++...+..+|.+++++||+|||+||++|++|++..+++++...++++|+++++.+.++.....      +...|..+
T Consensus        86 ~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  165 (315)
T 4amj_A           86 LWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQD  165 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999987765421      11234333


Q ss_pred             c-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-----ccchhhHHHHHHHHHHHHHHHHh
Q psy11022        192 V-----SYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPV-----IFGWDYSLMLTNMYSYIMFIVLW  261 (492)
Q Consensus       192 ~-----~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~f~i~~  261 (492)
                      .     .....+.....++.+++|++++.++|.++++.++++.++.++.+++     ..++|+|+++++..++++|++||
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~  245 (315)
T 4amj_A          166 PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCW  245 (315)
T ss_dssp             TTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            1     2235566666667789999999999999999999876543322211     22367899999999999999999


Q ss_pred             HhHHHHHHHHhccC--CcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        262 IPFCIVMSVASFRH--QITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       262 ~P~~i~~~~~~~~~--~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      +|+.+..++.....  ..........++.++|+++||+||+ +|++||++++++++
T Consensus       246 ~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~  300 (315)
T 4amj_A          246 LPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA  300 (315)
T ss_dssp             HHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhC
Confidence            99999998877632  3445566677899999999999999 99999999999985

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=100.00  E-value=9.1e-39  Score=323.56  Aligned_cols=278  Identities=20%  Similarity=0.230  Sum_probs=228.4

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhch-hcHHHHHHHhcCCCccccccc
Q psy11022         36 YDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVV-IPVSAVMILAGIKQAEPIKEI  114 (492)
Q Consensus        36 ~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~-~p~~~~~~~~~~~~~~~~~~~  114 (492)
                      .+.......+++.+++++|++||+++++++.++|++|++.|++++|||++|++.+++. +|..+.....+   .|.+++.
T Consensus        30 ~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~---~~~~~~~  106 (448)
T 2z73_A           30 PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK---KWIFGFA  106 (448)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---SCCSHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcC---CccCCHH
Confidence            3445677888999999999999999999999999999999999999999999998764 88877766554   4888999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc------cccccc
Q psy11022        115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK------VGPDYC  188 (492)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~------~~~~~C  188 (492)
                      .|++..++..++..+|++++++||+|||++|++|++|+++++++++..+++++|+++++++++.++..      .....|
T Consensus       107 ~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~c  186 (448)
T 2z73_A          107 ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNC  186 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECTTSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999998877632      123356


Q ss_pred             cccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCCCC-----cccchhhHHHHHHHHH
Q psy11022        189 SKKVSY----MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNP------SFKPP-----VIFGWDYSLMLTNMYS  253 (492)
Q Consensus       189 ~~~~~~----~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~  253 (492)
                      ...+..    ...+.....++.+++|+++++++|.+|+++++|++++.      ...+.     +..++|+|++|+++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~i  266 (448)
T 2z73_A          187 SFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVI  266 (448)
T ss_dssp             EECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHH
Confidence            655322    23445555567789999999999999999998764421      11111     1123578999999999


Q ss_pred             HHHHHHHhHhHHHHHHHHhccC---CcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcc
Q psy11022        254 YIMFIVLWIPFCIVMSVASFRH---QITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHY  316 (492)
Q Consensus       254 ~~~f~i~~~P~~i~~~~~~~~~---~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~  316 (492)
                      +++|++||+|+.+..++..+..   .......+..++.++|+++||+||+++|++||+++++++++
T Consensus       267 v~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~  332 (448)
T 2z73_A          267 VSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW  332 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999888876632   23445556678899999999999999999999999999864

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=297.42  Aligned_cols=264  Identities=17%  Similarity=0.317  Sum_probs=214.2

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccccc
Q psy11022         36 YDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM  115 (492)
Q Consensus        36 ~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~  115 (492)
                      ++..+.+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.+ +.+|........    .|..|+..
T Consensus         7 ~~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~-l~~p~~~~~~~~----~~~~~~~~   81 (296)
T 2lnl_A            7 ETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFA-LTLPIWAASKVN----GWIFGTFL   81 (296)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHS----SSCCSSHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHH-HhhhHHHhhccC----CCccchhH
Confidence            3445778889999999999999999999999999999999999999999999988 567776665543    38999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccc------cccc
Q psy11022        116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGP------DYCS  189 (492)
Q Consensus       116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~------~~C~  189 (492)
                      |+...++...+..+|.+++++||+|||+||++|++|+... +++....++++|+.+++.++|+.......      ..|.
T Consensus        82 c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~-~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~  160 (296)
T 2lnl_A           82 CKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK-RHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCY  160 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCC
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhh-hhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceee
Confidence            9999999999999999999999999999999999887654 45667778889999999999887653211      1111


Q ss_pred             cc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhH
Q psy11022        190 KK-----VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPF  264 (492)
Q Consensus       190 ~~-----~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~  264 (492)
                      ..     ......+......+.+++|+.++.++|.++.++++|          +..++++|.+|++..++++|++||+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~----------~~~~~~~k~~~~~~~v~~~f~icw~P~  230 (296)
T 2lnl_A          161 EVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK----------AHMGQKHRAMRVIFAVVLIFLLCWLPY  230 (296)
T ss_dssp             SCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSS----------CCCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhhhHHHHHHHhhhheeeeehHH
Confidence            11     112344556666788999999999999887654433          223567889999999999999999999


Q ss_pred             HHHHHHHhccCC------------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        265 CIVMSVASFRHQ------------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       265 ~i~~~~~~~~~~------------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      .+..+.......            .........+++++||++||+||+++|++||++++|+++
T Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~  293 (296)
T 2lnl_A          231 NLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILA  293 (296)
T ss_dssp             HHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence            999888766221            123345667899999999999999999999999999984

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=100.00  E-value=1.3e-37  Score=320.50  Aligned_cols=275  Identities=21%  Similarity=0.332  Sum_probs=228.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022         37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC  116 (492)
Q Consensus        37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  116 (492)
                      +.......+++.+++++|++||+++++++.++|++|++.|++++|||++|++.+++.+|..+.....+   .|.+++..|
T Consensus       179 ~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~---~~~~~~~~C  255 (514)
T 3sn6_R          179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK---TWTFGNFWC  255 (514)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHT---SCCSCSHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcC---CeeCCcchh
Confidence            34567788999999999999999999999999999999999999999999999989999988887765   488999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc------ccccccc
Q psy11022        117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV------GPDYCSK  190 (492)
Q Consensus       117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~~~~C~~  190 (492)
                      ++..++..++..+|++++++||+|||++|++|++|+.+++++++..+++++|++++++++++..+..      +...|..
T Consensus       256 ~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~  335 (514)
T 3sn6_R          256 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYA  335 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceee
Confidence            9999999999999999999999999999999999999999999999999999999999876654321      1112322


Q ss_pred             c-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------------------------CCCCCcccc
Q psy11022        191 K-----VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNP------------------------SFKPPVIFG  241 (492)
Q Consensus       191 ~-----~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~------------------------~~~~~~~~~  241 (492)
                      .     ......+.....++.+++|+++++++|.+|++.+|++.++.                        .++..+..+
T Consensus       336 ~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (514)
T 3sn6_R          336 EETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCL  415 (514)
T ss_dssp             SSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CH
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhH
Confidence            2     12235677778888999999999999999999998753210                        011122334


Q ss_pred             hhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhcc--CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        242 WDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFR--HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       242 ~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~--~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      +++|+++++++++++|++||+|+.+..++....  ........+..++.++|+++||+||+ ++++||++++++++
T Consensus       416 ~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~  490 (514)
T 3sn6_R          416 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC  490 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhC
Confidence            678999999999999999999999998887763  23455666777899999999999999 99999999999984

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.68  E-value=1.1e-17  Score=171.52  Aligned_cols=110  Identities=24%  Similarity=0.346  Sum_probs=101.8

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|+|++|||++|++++++.+|+.+......+. .|.+|..+|++..++..++..+|+++|++||+|||+||++|+
T Consensus        65 ~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~-~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~  143 (510)
T 4grv_A           65 SLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHH-PWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPF  143 (510)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccc
Confidence            4668899999999999999999999998887665422 599999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|+..++++++..+++++|++++++++|++.
T Consensus       144 ~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~  174 (510)
T 4grv_A          144 KAKTLMSRSRTKKFISAIWLASALLAIPMLF  174 (510)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHHHTTHHH
T ss_pred             cccccccccccceeehHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999874

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.63  E-value=2e-16  Score=161.77  Aligned_cols=107  Identities=25%  Similarity=0.424  Sum_probs=101.0

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|+++|++++|||++|++++++.+|+.+.....+   .|.+|...|++..++..++..+|++++++||+|||+||++|+
T Consensus        70 ~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~---~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl  146 (500)
T 2rh1_A           70 RLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK---MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF  146 (500)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccC
Confidence            57889999999999999999999999999988888   799999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQF  482 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  482 (492)
                      +|.+.++++++..+++++|+++++++++|+
T Consensus       147 ~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~  176 (500)
T 2rh1_A          147 KYQSLLTKNKARVIILMVWIVSGLTSFLPI  176 (500)
T ss_dssp             TTSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeeecccceeehhhHHHHHHHHHHhcch
Confidence            999999999999999999999999996554

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=158.38  Aligned_cols=112  Identities=19%  Similarity=0.411  Sum_probs=104.1

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|++++|||++|++.+++.+|..+.....+   .|.+|...|++.+++..++..+|++++++||+|||+||++|+
T Consensus        38 ~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~  114 (452)
T 3rze_A           38 KLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS---KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPL  114 (452)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSS---SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcc
Confidence            46789999999999999999999999999998888   798999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhcccccee
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY  487 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  487 (492)
                      +|...++++++..+++++|++++++++|.+....|
T Consensus       115 ~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~  149 (452)
T 3rze_A          115 RYLKYRTKTRASATILGAWFLSFLWVIPILGWNHF  149 (452)
T ss_dssp             CTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999887654433

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.62  E-value=1.8e-16  Score=151.65  Aligned_cols=108  Identities=23%  Similarity=0.440  Sum_probs=102.2

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|+++|+++.|||++|++.++..+|..+.....+   .|.+|+..|++.+++...+..+|++++++||+|||.||++|+
T Consensus        41 ~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~  117 (315)
T 4amj_A           41 RLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF  117 (315)
T ss_dssp             GGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHS---SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcC---CeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            56789999999999999999999999999888888   788999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|++.++++++...++++|+++++++.||+.
T Consensus       118 ~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  148 (315)
T 4amj_A          118 RYQSLMTRARAKVIICTVWAISALVSFLPIM  148 (315)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhhhHHHHHHHHHHHHHHH
Confidence            9999899999999999999999999987764

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.61  E-value=5.2e-16  Score=157.10  Aligned_cols=108  Identities=17%  Similarity=0.274  Sum_probs=103.1

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|++++|||++|++.+++.+|..+.....+   .|.+|...|++..++..++..+|++++++||+|||+||++|+
T Consensus        53 ~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~  129 (467)
T 3uon_A           53 HLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIG---YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPL  129 (467)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS---SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            57889999999999999999999999999998888   788999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|...++++++..+++++|++++++++|++.
T Consensus       130 ~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  160 (467)
T 3uon_A          130 TYPVKRTTKMAGMMIAAAWVLSFILWAPAIL  160 (467)
T ss_dssp             TSGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998874

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.60  E-value=7e-16  Score=156.96  Aligned_cols=109  Identities=14%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|++++|||++|+++++. +|..+.....++  .|.+|...|++..++..++..+|++++++||+|||+||++|+
T Consensus        50 ~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~  126 (484)
T 3vw7_A           50 KVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGS--DWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPM  126 (484)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTS--CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC--CcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEccc
Confidence            57889999999999999999765 665555555442  688999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhcccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEK  484 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  484 (492)
                      +|...++++++..+++++|++++++++|++..
T Consensus       127 ~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~  158 (484)
T 3vw7_A          127 QSLSWRTLGRASFTCLAIWALAIAGVVPLLLK  158 (484)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998854

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=144.35  Aligned_cols=105  Identities=20%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|+++|+++.|||++|+++++ .+|....... +   .|..|+..|+...++...+..+|++++++||+|||.||++|+
T Consensus        41 ~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~-~---~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~  115 (296)
T 2lnl_A           41 VGRSVTDVYLLNLALADLLFAL-TLPIWAASKV-N---GWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHAT  115 (296)
T ss_dssp             TCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH-S---SSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCS
T ss_pred             CCCChHHHHHHHHHHHHHHHHH-hhhHHHhhcc-C---CCccchhHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhcc
Confidence            5789999999999999999875 5676665544 3   588999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|.... ++++..+++++|+.++++++|++.
T Consensus       116 ~~~~~~-~~~~~~~~~~~W~~s~~~~~p~~~  145 (296)
T 2lnl_A          116 RTLTQK-RHLVKFVCLGCWGLSMNLSLPFFL  145 (296)
T ss_dssp             SSSCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhh-hhhhHheehHHHHHHHHHhcchhh
Confidence            988654 567777888999999999998764

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.59  E-value=5.6e-16  Score=156.70  Aligned_cols=108  Identities=21%  Similarity=0.420  Sum_probs=101.5

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|++++|||++|+++++. +|+.+.....+   .|.+|...|++.+++..++..+|++++++||+|||+||++|+
T Consensus        47 ~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~  122 (464)
T 4dkl_A           47 KMKTATNIYIFNLALADALATST-LPFQSVNYLMG---TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPV  122 (464)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS---SCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC---CcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            46789999999999999999876 99999988888   788999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhcccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEK  484 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  484 (492)
                      +|.+.++++++..+++++|++++++++|++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~  154 (464)
T 4dkl_A          123 KALDFRTPRNAKIVNVCNWILSSAIGLPVMFM  154 (464)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccHhHHhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988853

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.59  E-value=1.6e-15  Score=147.37  Aligned_cols=108  Identities=21%  Similarity=0.392  Sum_probs=101.0

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      +++|+++|+++.|||++|++.++..+|..+.....+   .|.+|+..|++.+++...+..+|++++++||+|||+||++|
T Consensus        67 ~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P  143 (349)
T 1u19_A           67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG---YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKP  143 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcC---eeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCC
Confidence            367889999999999999999999999998888888   78899999999999999999999999999999999999999


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      ++|++ ++++++...++++|+.++++++|++.
T Consensus       144 ~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~  174 (349)
T 1u19_A          144 MSNFR-FGENHAIMGVAFTWVMALACAAPPLV  174 (349)
T ss_dssp             SSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGT
T ss_pred             cccee-eccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99876 79999999999999999999999874

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.58  E-value=1.9e-15  Score=147.89  Aligned_cols=108  Identities=15%  Similarity=0.271  Sum_probs=99.8

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|+++|+++.|||++|++.+++.+|..+.....+   .|.+|...|++.+++...+..+|++++++||+|||+||++|+
T Consensus        62 ~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~  138 (364)
T 2ks9_A           62 RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN---EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL  138 (364)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT---SCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            56889999999999999999999999988888877   788999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEKS  485 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  485 (492)
                      +|+  ++++++...++++|++++++++|++...
T Consensus       139 ~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~  169 (364)
T 2ks9_A          139 QPR--LSATATKVVICVIWVLALLLAFPQGYYS  169 (364)
T ss_dssp             TTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred             ccc--cccchHHHHHHHHHHHHHHHHhHHHHHh
Confidence            976  6899999999999999999999887543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.57  E-value=1.3e-15  Score=156.46  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=91.2

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|+++|++++|||++|++++++..|..+.. ..+   .|.++...|++..++..++..+|+++|++||+|||+||+ |+
T Consensus        93 ~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~---~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~  167 (520)
T 3v2y_A           93 KFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GAT---TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-KM  167 (520)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG---GTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc---ceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-cc
Confidence            4788999999999999999999888877766 344   688999999999999999999999999999999999999 99


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|...++++++..+++++|++++++++||+.
T Consensus       168 ~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~  198 (520)
T 3v2y_A          168 KLHNGSNNFRLFLLISACWVISLILGGLPIM  198 (520)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998875

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.57  E-value=1.8e-15  Score=153.81  Aligned_cols=112  Identities=21%  Similarity=0.367  Sum_probs=102.4

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      .++++++|++++|||++|++++++.+|+.+.....++  .|.+|...|++..++..++..+|++++++||+|||+||++|
T Consensus        67 ~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~--~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P  144 (481)
T 3pbl_A           67 RALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG--VWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMP  144 (481)
T ss_dssp             STTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTS--CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3678899999999999999999999999888777643  68899999999999999999999999999999999999999


Q ss_pred             Ccc---cceeehhHHHHHHHHHHHHHHHHhhhccccc
Q psy11022        452 PEC---YTFFSKSHIILSVIMIWLVSILLTTLQFEKS  485 (492)
Q Consensus       452 ~~~---~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  485 (492)
                      ++|   .+..+++++..+++++|++++++++|++...
T Consensus       145 ~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~  181 (481)
T 3pbl_A          145 VHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGF  181 (481)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            998   5678899999999999999999999987643

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.56  E-value=3.2e-15  Score=152.14  Aligned_cols=106  Identities=15%  Similarity=0.242  Sum_probs=98.0

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|++++|||++|++++++.+|+.+...  .   .|..+...|++..++..++..+|++++++||+|||+||++|+
T Consensus        51 ~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~---~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~  125 (488)
T 3eml_A           51 NLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--T---GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL  125 (488)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--T---CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--c---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence            57889999999999999999999999877633  2   577899999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|...++++++..+++++|++++++++|++.
T Consensus       126 ~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~  156 (488)
T 3eml_A          126 RYNGLVTGTRAKGIIAICWVLSFAIGLTPML  156 (488)
T ss_dssp             GSTTTSCHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998875

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.56  E-value=1.8e-15  Score=155.33  Aligned_cols=107  Identities=25%  Similarity=0.432  Sum_probs=101.7

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++|++.|++++|||++|++++++.+|+.+.....+   .|.+|...|++..++..++..+|++++++||+|||+||++|+
T Consensus       212 ~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~---~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl  288 (514)
T 3sn6_R          212 RLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK---TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF  288 (514)
T ss_dssp             GGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHT---SCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcC---CeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            57889999999999999999999999999998888   788999999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQF  482 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  482 (492)
                      +|+..++++++..+++++|+++++++++|+
T Consensus       289 ~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~  318 (514)
T 3sn6_R          289 KYQSLLTKNKARVIILMVWIVSGLTSFLPI  318 (514)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             ccchhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999987665

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.55  E-value=2e-15  Score=154.28  Aligned_cols=111  Identities=19%  Similarity=0.296  Sum_probs=100.5

Q ss_pred             ccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeec
Q psy11022        371 RSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM  450 (492)
Q Consensus       371 ~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~  450 (492)
                      ..++|+++|++++|||++|++++ +.+|+.+.....    .|.+|...|++..++..++..+|++++++||+|||+||++
T Consensus        76 ~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~----~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~  150 (502)
T 3odu_A           76 QKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA----NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH  150 (502)
T ss_dssp             TCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc----CCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheec
Confidence            34678999999999999999995 688988776654    4889999999999999999999999999999999999999


Q ss_pred             cCcccceeehhHHHHHHHHHHHHHHHHhhhccccce
Q psy11022        451 PPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSI  486 (492)
Q Consensus       451 p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  486 (492)
                      |++|...++++++..+++++|++++++++|++....
T Consensus       151 P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~  186 (502)
T 3odu_A          151 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN  186 (502)
T ss_dssp             TTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEE
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHhee
Confidence            999999999999999999999999999999885433

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.54  E-value=3.1e-15  Score=150.54  Aligned_cols=106  Identities=15%  Similarity=0.242  Sum_probs=97.7

Q ss_pred             ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP  452 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~  452 (492)
                      ++++++|++++|||++|++.+++.+|..+...  .   .|..+...|++..++..++..+|++++++||+|||+||++|+
T Consensus        61 ~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~---~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~  135 (447)
T 4eiy_A           61 NLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--T---GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL  135 (447)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--T---TCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c---ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEeccc
Confidence            56889999999999999999999999877633  3   477889999999999999999999999999999999999999


Q ss_pred             cccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      +|...++++++..+++++|++++++++|++.
T Consensus       136 ~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~  166 (447)
T 4eiy_A          136 RYNGLVTGTRAKGIIAICWVLSFAIGLTPML  166 (447)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred             ccchhhhHHHHHHHHhHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999998875

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.53  E-value=9.1e-15  Score=147.31  Aligned_cols=108  Identities=20%  Similarity=0.311  Sum_probs=100.0

Q ss_pred             ccccccchHhHHHHHhhHhhhccc-hhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        373 IIHITGNTYIAVEALADLLVSGVV-IPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       373 ~l~~~~~~~~~~la~~D~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      ++|++.|++++|||++|++.+++. +|..+.....+   .|.++...|++..++..++..+|++++++||+|||+||++|
T Consensus        64 ~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P  140 (448)
T 2z73_A           64 SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK---KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRP  140 (448)
T ss_dssp             TTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcC---CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467889999999999999998774 89888888877   78899999999999999999999999999999999999999


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      ++|++.++++++..+++++|+++++++++++.
T Consensus       141 ~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~  172 (448)
T 2z73_A          141 MAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF  172 (448)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGG
T ss_pred             ccccceechhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999987764

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.57  E-value=3.7e-09  Score=62.97  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhhhceeeeeccCcccceeehh
Q psy11022        432 VTVWTLAMIAMENYVRLCMPPECYTFFSKS  461 (492)
Q Consensus       432 ~s~~~l~~is~dRy~ai~~p~~~~~~~~~~  461 (492)
                      +|+++|++||+|||+||++|++|...++++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            689999999999999999999998877765

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=98.45  E-value=6.6e-08  Score=60.76  Aligned_cols=35  Identities=26%  Similarity=0.652  Sum_probs=31.4

Q ss_pred             HHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022        281 FYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH  315 (492)
Q Consensus       281 ~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~  315 (492)
                      ..+..++.++||++||+||++++++||++++++++
T Consensus         3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~   37 (40)
T 2koe_A            3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP   37 (40)
T ss_dssp             HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhh
Confidence            45667889999999999999999999999999874

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.37  E-value=9.2e-08  Score=56.74  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCcccccccchh
Q psy11022        129 VTVWTLAMIAMENYVRLCMPPECYTFFSKS  158 (492)
Q Consensus       129 ~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~  158 (492)
                      +|++++++||+|||+||++|++|...++++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            688999999999999999999988877664

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=97.31  E-value=2.8e-05  Score=46.05  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhHhHHHHHHHHh
Q psy11022        243 DYSLMLTNMYSYIMFIVLWIPFCIVMSVAS  272 (492)
Q Consensus       243 ~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~  272 (492)
                      |+|.+|++.++++.|++||+|+.+..++..
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            356889999999999999999998776543

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=94.73  E-value=0.0015  Score=44.49  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhhhcceeeeeeeecccc
Q psy11022         42 ARLLITTGLSVLGSVGNGYMISSVMIEDHL   71 (492)
Q Consensus        42 ~~~~~~~~~~i~gl~gN~~vi~~i~~~~~l   71 (492)
                      ...+++.+++++|++||+++++++.++|--
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence            677899999999999999999998776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	9e-13

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.3 bits (163), Expect = 9e-13
 Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 14/292 (4%)

Query: 50  LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAE 109
           L +LG   N   +   +    LR   N  +   A+ADL +       +    L G     
Sbjct: 47  LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG 106

Query: 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWL 169
           P    +      L    +L ++  LA+       +           +   +  + +M   
Sbjct: 107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALA 166

Query: 170 VSILLTTLQFIYKVGPDYCSKKVSYM--------ELYQGIIGSLFFFIPIIITCILYMKI 221
            +         Y      CS  + Y         E +   +  + F IP+I+    Y ++
Sbjct: 167 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

Query: 222 TYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF 281
            + V+ A      +       +  +    +   I F++ W+P+  V              
Sbjct: 227 VFTVKEAAAQQ-QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP 285

Query: 282 YYL---AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSR 330
            ++   A+ A + +  N V+Y + N+ FRN  +     CC K  +     S 
Sbjct: 286 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKNPLGDDEAST 335

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.28

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.2e-38  Score=303.71  Aligned_cols=307  Identities=18%  Similarity=0.234  Sum_probs=238.5

Q ss_pred             CCCCCCCccccccccccCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHH
Q psy11022          2 MTPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAV   81 (492)
Q Consensus         2 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~   81 (492)
                      |+++++.+..++..+.+...  ....+.......+++...+.+.++.+++++|++||+++++++.++|++|++.|++++|
T Consensus         1 ~~~~~~~~~~~~~~n~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~n   78 (348)
T d1u19a_           1 MNGTEGPNFYVPFSNKTGVV--RSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLN   78 (348)
T ss_dssp             CCSEECSSCEESSCCTTSCC--CCTTTSCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHH
T ss_pred             CCCCCCCCccccCCCCCCCc--CCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHH
Confidence            55555666554333322222  2222223334455666778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHH
Q psy11022         82 EALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHII  161 (492)
Q Consensus        82 Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~  161 (492)
                      ||++|++.++...|..+.....+.   |..++..|+...+....+..++.++++++++|||++|++|++|... ++++..
T Consensus        79 LaiaDll~~~~~~~~~~~~~~~~~---~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~  154 (348)
T d1u19a_          79 LAVADLFMVFGGFTTTLYTSLHGY---FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAI  154 (348)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHTS---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCc---cccCchhhhhhhhccccceeeecchhhhhhcccceeeecccccccc-cccccc
Confidence            999999999888998887776663   6788899999999999999999999999999999999999887664 666777


Q ss_pred             hHhhHHHHHHHHHhhhhhhhcc------cccccccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11022        162 LSVIMIWLVSILLTTLQFIYKV------GPDYCSKK------VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLAR  229 (492)
Q Consensus       162 ~~i~~~w~~s~~~~~~~~~~~~------~~~~C~~~------~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~  229 (492)
                      ..++.+|..++++..++.....      ....|...      ......+......+..++|++++.++|.++.+++||++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~  234 (348)
T d1u19a_         155 MGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAA  234 (348)
T ss_dssp             HHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCC
T ss_pred             ccceeeehhhhheecccccccceeccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            7778888888888877765421      12223322      12234455666667789999999999999988887765


Q ss_pred             cCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhc---cCCcchHHHHHHHHHhhcccccchhhhhcChHH
Q psy11022        230 QNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASF---RHQITPSFYYLAWLALSKSCINSVLYCISNRHF  306 (492)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~---~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~  306 (492)
                      ++ +++..++.++|+|.+|+++.++++|++||+|+.+..++...   .+.......+..++.++|+++||+||+++|++|
T Consensus       235 ~~-~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~f  313 (348)
T d1u19a_         235 AQ-QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQF  313 (348)
T ss_dssp             CS-SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHH
T ss_pred             cc-cchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            43 33444556778999999999999999999999988876655   223344566677889999999999999999999


Q ss_pred             HHHHHHHhc
Q psy11022        307 RNAYINLFH  315 (492)
Q Consensus       307 R~~~~~~~~  315 (492)
                      |++++++++
T Consensus       314 R~~~~~~l~  322 (348)
T d1u19a_         314 RNCMVTTLC  322 (348)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            999999984

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=2e-12  Score=122.97  Aligned_cols=108  Identities=21%  Similarity=0.392  Sum_probs=97.5

Q ss_pred             cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022        372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP  451 (492)
Q Consensus       372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p  451 (492)
                      .++|++.|+++.|||++|++.++...|..+.....+   .|..+...|+..+++...+..+|+++++++++|||.+|++|
T Consensus        66 k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~---~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p  142 (348)
T d1u19a_          66 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG---YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKP  142 (348)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccC---ccccCchhhhhhhhccccceeeecchhhhhhcccceeeecc
Confidence            367899999999999999999999999999888888   67799999999999999999999999999999999999999


Q ss_pred             CcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022        452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFE  483 (492)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  483 (492)
                      ++|.. .++++....++.+|.+++++..|+..
T Consensus       143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (348)
T d1u19a_         143 MSNFR-FGENHAIMGVAFTWVMALACAAPPLV  173 (348)
T ss_dssp             SSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGT
T ss_pred             ccccc-cccccccccceeeehhhhheeccccc
Confidence            98876 46778888888899999888887763