Psyllid ID: psy11031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTALSLDNDNTVVHDLEGGAGEPVNIPNGFGPPRENRTVTTLFTKPQDPVAPYTKDQQDPVSRNVPYMKDQQDPVNTISRNVPMTREMPETGIEREDPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcHHcccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccEEcHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHccccccEEEEEcHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHccccccccHHHHHHHHHHcccHccccccHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHcccccEEEEEccHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHccccEEEcHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHccccEEEEEEccHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccccccccccccccccccEEcccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mygpplyatslldfpshrnplkMFNLFVSeevkdfsflsSKTVTEVLMLEMKMSPAAKAFLIsgyprnmrdvveysdkikTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANfyqnvtpvtdffdqrgmliavngernpvevYADFRTAVLKILnknnvvpgskplvngnaipvpetlppqvqsiaatvhsppkhftrpngvvsepyrkiksverntPLVVWVvggpgssksEMCQKVLqdypnwtqiSLGKLLRYFANIeddgeglnsRIKSsvsagdfvnrdVVLDIVYAEMKKtkyteadgividgfpremsQLIDFenkyqihppmilidCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVEtrltivdgdtqlpQVREEFERVLKKIIDDLentarprdkrnhtalsldndntvvhdleggagepvnipngfgpprenrtvttlftkpqdpvapytkdqqdpvsrnvpymkdqqdpvntisrnvpmtrempetgieredpl
Flexible Loop (DISEMBL)
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILnknnvvpgskPLVNGNAIPVPETLPPQVQSIAAtvhsppkhftrpngvvsepyrkiksverntplvvWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKssvsagdfvnrdVVLDIVYAEmkktkyteadgividGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFrertlpmlramdvetrltivdgdtqlpqvrEEFERVLKKIiddlentarprdkrnhtalsldndnTVVHDLEGGAGEPVNIPNGFGPPRENRTVTTLftkpqdpvapytkdqqdpvsrnvpymkdqqdpvntisrnvpmtrempetgieredpl
Low Complexity Region (SEG)
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAfrrrlelfrerTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTALSLDNDNTVVHDLEGGAGEPVNIPNGFGPPRENRTVTTLFTKPQDPVAPYTKDQQDPVSRNVPYMKDQQDPVNTISRNVPMTREMPETGIEREDPL
Disordered region (IsUnstruct)
******YATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAI**********************************YRKIKSVERNTPLVVWVVGGPG***SEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD***************************************************************************************************************
Disordered Region (DISOPRED)
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDY****GHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI***************************************************************TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA***********RIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII*************************************************************************************Q***************************
Disordered Region (DISEMBL)
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTALSLDNDNTVVHDLEGGAGEPVNIPNGFGPPRENRTVTTLFTKPQDPVAPYTKDQQDPVSRNVPYMKDQQDPVNTISRNVPMTREMPETGIEREDPL
Disordered Region (DISPRO)
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK*****************************************************IKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLEN*****************DNTVVHDLEGGAGEPVNIPNGFGPPRENRTVTTLFTKPQDPVAPYTKDQQDPVSRNVPYMKDQQDPVNTISRNVPMTR*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTALSLDNDNTVVHDLEGGAGEPVNIPNGFGPPRENRTVTTLFTKPQDPVAPYTKDQQDPVSRNVPYMKDQQDPVNTISRNVPMTREMPETGIEREDPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q9Y6K8	562	Adenylate kinase isoenzym	yes	N/A	0.626	0.580	0.246	7e-23
Q920P5	562	Adenylate kinase isoenzym	yes	N/A	0.632	0.585	0.251	1e-21
A4IFD0	562	Adenylate kinase isoenzym	yes	N/A	0.642	0.594	0.235	1e-20
P05081	194	Adenylate kinase isoenzym	no	N/A	0.271	0.726	0.327	2e-14
P15700	204	Uridylate kinase OS=Sacch	yes	N/A	0.336	0.857	0.240	5e-14
O04905	202	UMP/CMP kinase OS=Arabido	yes	N/A	0.330	0.851	0.272	6e-14
P12115	194	Adenylate kinase isoenzym	N/A	N/A	0.330	0.886	0.317	9e-14
O24464	231	Adenylate kinase OS=Prunu	N/A	N/A	0.328	0.740	0.291	2e-13
Q9R0Y5	194	Adenylate kinase isoenzym	no	N/A	0.282	0.757	0.298	2e-13
Q20140	210	Probable adenylate kinase	no	N/A	0.317	0.785	0.275	3e-13

>sp|Q9Y6K8|KAD5_HUMAN Adenylate kinase isoenzyme 5 OS=Homo sapiens GN=AK5 PE=1 SV=2

 Score =  108 bits (271), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 176/369 (47%), Gaps = 43/369 (11%)

Query: 42  TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-----RQSLLE 96
           T+TE+    M++ P  +  +I G+PR++   + + D+I T + V+ +A      ++ LL+
Sbjct: 198 TITEIKQKLMQI-PDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLK 256

Query: 97  RQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156
           R    G    +V  +  R  L NF QN  P+  +F ++G+++  + +R+  EV+ D   A
Sbjct: 257 RAEQQGRPDDNVKATQRR--LMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMA 314

Query: 157 VLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPN-------GV 209
           V      N + P +K    G++   P  +    + I        +   + N       G 
Sbjct: 315 V-----DNKLFP-NKEAAAGSSDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGG 368

Query: 210 VSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED 269
             E  RK K        +++++GGPGS K   C+K+++ Y  +T +S G+LLR     E 
Sbjct: 369 FMEDLRKCK--------IIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLREELASES 419

Query: 270 DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN 329
           +   L   I+  +  GD V   +VL+++   M  +   +  G +IDG+PRE+ Q  +F  
Sbjct: 420 ERSKL---IRDIMERGDLVPSGIVLELLKEAMVAS-LGDTRGFLIDGYPREVKQGEEFGR 475

Query: 330 KYQIHPPMILIDCS-----KLVLHKGQ----IDNSVSAFRRRLELFRERTLPMLRAMDVE 380
           +      +I +DCS       +L + +    +D++     +RLE +   ++P++   + +
Sbjct: 476 RIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETK 535

Query: 381 TRLTIVDGD 389
           T+L  ++ +
Sbjct: 536 TQLHKINAE 544

Active on AMP and dAMP with ATP as a donor. When GTP is used as phosphate donor, the enzyme phosphorylates AMP, CMP, and to a small extent dCMP.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q920P5|KAD5_MOUSE Adenylate kinase isoenzyme 5 OS=Mus musculus GN=Ak5 PE=2 SV=2

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 166/378 (43%), Gaps = 49/378 (12%)

Query: 42  TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
           T+TE+    M++ P  +  +I G+PR++   + + D+I T + V+ +A   Q L ER   
Sbjct: 198 TITEIKQKLMQI-PDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLQK 256

Query: 101 YGAKLGH--VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158
              + G     L   +  L NF QN  P+  +F ++G+++  + +R+   V+ D   AV 
Sbjct: 257 RAEQQGRPDDNLKATQRRLVNFKQNAAPLVKYFQEKGLIVTFDADRDEDAVFHDISVAV- 315

Query: 159 KILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPN----------- 207
                      SK   N  A      L P +   A  +      +   +           
Sbjct: 316 ----------DSKLFPNKEAPMDSSDLDPSMMFDAGEIIDTGSDYDNQDDDQLNVFGEDT 365

Query: 208 -GVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN 266
            G   E  RK K        +++++GGPGS K   C+K+ + Y  +T +S G+LLR    
Sbjct: 366 EGGFMEDLRKCK--------IIFLMGGPGSGKGTQCEKLAEKY-GFTHLSTGELLRQELT 416

Query: 267 IEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLID 326
            E +   L   I+  +  GD V   VVL+++   M  +      G +IDG+PRE+ Q  +
Sbjct: 417 SESERSKL---IRDIMERGDLVPSGVVLELLKEAMVAS-LGNTKGFLIDGYPREVKQGEE 472

Query: 327 FENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFR---------RRLELFRERTLPMLRAM 377
           F  +      +I +DCS   +    +  S S+ R         +RLE +   ++P++   
Sbjct: 473 FGRRIGDPHLVICMDCSADTMTNRLLQRSQSSQRGEDGAKSIAKRLEAYHRASIPVVTYY 532

Query: 378 DVETRLTIVDGDTQLPQV 395
           + +T+L  V+ +    QV
Sbjct: 533 ERKTQLRKVNAEGTPEQV 550

Active on AMP and dAMP with ATP as a donor. When GTP is used as phosphate donor, the enzyme phosphorylates AMP, CMP, and to a small extent dCMP.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A4IFD0|KAD5_BOVIN Adenylate kinase isoenzyme 5 OS=Bos taurus GN=Ak5 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 163/361 (45%), Gaps = 27/361 (7%)

Query: 42  TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
           T+TE+    M+M P     +I G+PR++   + + D+I T + V+ +A   Q L ER + 
Sbjct: 198 TITEIKQKLMQM-PDEVGIVIDGFPRDVAQALSFEDQICTPDLVVFLACTNQRLKERLLK 256

Query: 101 YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV- 157
              + G     L   +  L NF QN  P+  +F ++G+++  + +R+  EV+ D   AV 
Sbjct: 257 RAEQQGRPDDNLKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVD 316

Query: 158 LKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKI 217
            K+        GS  L     +   E +                      G   E  +K 
Sbjct: 317 SKLFPNKEAAAGSSDLDPSMMLDTGEVIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLKKC 376

Query: 218 KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR 277
           K        +++++GGPGS K   C K+ + Y  +T +S  +LL+   + E    G +  
Sbjct: 377 K--------IIFMIGGPGSGKGTQCGKLAEKY-GFTHLSTDELLQNELSSES---GRSKL 424

Query: 278 IKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPM 337
           I+  +  G+ V   ++L+++   M  +  +   G +IDG+PRE+ Q  +F  +      +
Sbjct: 425 IRDIMERGELVPSGIILELLKEAMVAS-LSNTKGFLIDGYPREVKQGEEFGRRIGDPHLV 483

Query: 338 ILIDCSKLVL---------HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDG 388
           I +DCS   +         +  Q D++ +   +RLE +   ++P++   + +T+L  ++ 
Sbjct: 484 ICMDCSADTMTNRLLQRSRNSPQADDNTTTIAKRLETYYRASIPVVAYYETKTQLHKINA 543

Query: 389 D 389
           +
Sbjct: 544 E 544

Active on AMP and dAMP with ATP as a donor. When GTP is used as phosphate donor, the enzyme phosphorylates AMP, CMP, and to a small extent dCMP.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P05081|KAD1_CHICK Adenylate kinase isoenzyme 1 OS=Gallus gallus GN=AK1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 18/159 (11%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           +++VVGGPGS K   C+K++  Y  +T +S G LLR  A +    E    ++++ +  G+
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVHKY-GYTHLSTGDLLR--AEVSSGSE-RGKKLQAIMEKGE 66

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMIL--IDCSK 344
            V  D VLD++   M   K   + G +IDG+PRE+ Q  +FE K  I PP +L  +D  K
Sbjct: 67  LVPLDTVLDMLRDAM-LAKADTSKGFLIDGYPREVKQGEEFEKK--IAPPTLLLYVDAGK 123

Query: 345 LVLHK---------GQIDNSVSAFRRRLELFRERTLPML 374
             + K         G++D++    ++RLE + + T P++
Sbjct: 124 ETMVKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVI 162

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P15700|UMPK_YEAST Uridylate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=URA6 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 94/187 (50%), Gaps = 12/187 (6%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           V++V+GGPG+ K   C+K+++DY ++  +S G LLR  A     G      IK+ +  G 
Sbjct: 18  VIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR--AEQGRAGSQYGELIKNCIKEGQ 74

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346
            V +++ L ++   +           +IDGFPR+M Q I FE        ++  DC + +
Sbjct: 75  IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDI 134

Query: 347 L---------HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVRE 397
           +           G+ D+++ + ++R   F+E ++P++   + ++++  V  D  +  V +
Sbjct: 135 MLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYK 194

Query: 398 EFERVLK 404
           + +  ++
Sbjct: 195 DVQDAIR 201

Furnishes the cell with pyrimidines. Accepts UMP, and dUMP as phosphate acceptors with high activity; to a lesser extent, it can also use IMP, GMP, dGMP, 5-iodo-dUMP, XMP, and dTMP as substrates. ATP and dATP are the best phosphate donors; can use GTP, dGTP, dCTP, and dTTP to some degree (30-50%).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: -

>sp|O04905|UMPK_ARATH UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 15/187 (8%)

Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
           P V++V+GGPGS K   C  +++ Y  +T +S G LLR  A I+   E   + I++ +  
Sbjct: 14  PTVIFVLGGPGSGKGTQCAYIVEHY-GYTHLSAGDLLR--AEIKSGSEN-GTMIQNMIKE 69

Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMIL-IDCS 343
           G  V  +V + ++    K  +    D  +IDGFPR       FE   +I P  +L  DC 
Sbjct: 70  GKIVPSEVTIKLL---QKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 344 KLVLHK-------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVR 396
           +  + K       G+ D+++   R+R ++F E +LP++   + + ++  ++    +  V 
Sbjct: 127 EEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVF 186

Query: 397 EEFERVL 403
           EE + + 
Sbjct: 187 EEVKAIF 193

Furnishes the cell with pyrimidines. Accepts UMP and CMP as phosphate acceptors with high activity; does not act on dCMP and dUMP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P12115|KAD1_CYPCA Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 102/189 (53%), Gaps = 17/189 (8%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           +V+VVGGPGS K   C+K+++ Y  +T +S G LLR  A +    E    ++++ +  G+
Sbjct: 10  IVFVVGGPGSGKGTQCEKIVEKY-GYTHLSSGDLLR--AEVASGSE-RGKQLQAIMQKGE 65

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS--- 343
            V  D VLD++   M   K   + G +IDG+PRE+ Q  +FE K      ++ ID     
Sbjct: 66  LVPLDTVLDMIKDAM-IAKADVSKGYLIDGYPREVKQGEEFEKKIGAPALLLYIDAKAET 124

Query: 344 --KLVLHKGQI----DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVRE 397
             + ++ +GQ     D++    ++RL+L+ + T P++     ETR  +   +++LP V E
Sbjct: 125 MVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIAYY--ETRGIVRKINSELP-VDE 181

Query: 398 EFERVLKKI 406
            F  V+K I
Sbjct: 182 VFAIVVKAI 190

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Cyprinus carpio (taxid: 7962)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|O24464|KAD_PRUAR Adenylate kinase OS=Prunus armeniaca PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 18/189 (9%)

Query: 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSS 281
           + +P V +V+GGPGS K   C K+++ +  +T +S G LLR        G    S I S+
Sbjct: 44  KGSPFVTFVLGGPGSGKGTQCAKIVEAF-GFTHVSAGDLLRREIA---SGSAYGSVILST 99

Query: 282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMIL-I 340
           +  G  V   V ++++  EM+ +   +    +IDGFPR       FE      P ++L  
Sbjct: 100 IREGKIVPSQVTVELIQKEMESSDNYK---FLIDGFPRSEENRKAFEQTIGAEPDVVLFF 156

Query: 341 DC-----SKLVLHK--GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
           DC      K VL++  G++D+++   ++RLE+F E   P++       +L  ++    + 
Sbjct: 157 DCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINA---VG 213

Query: 394 QVREEFERV 402
            V E FE+V
Sbjct: 214 TVDEIFEKV 222

This small ubiquitous enzyme is essential for maintenance and cell growth.

Prunus armeniaca (taxid: 36596)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9R0Y5|KAD1_MOUSE Adenylate kinase isoenzyme 1 OS=Mus musculus GN=Ak1 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 14/161 (8%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           +++VVGGPGS K   C+K++Q Y  +T +S G LLR  A +    E    ++ + +  G+
Sbjct: 10  IIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR--AEVSSGSE-RGKKLSAIMEKGE 65

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346
            V  D VLD++   M   K   ++G +IDG+PRE+ Q  +FE K      ++ +D     
Sbjct: 66  LVPLDTVLDMLRDAM-LAKVDSSNGFLIDGYPREVKQGEEFEQKIGQPTLLLYVDAGAET 124

Query: 347 LHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMD 378
           + +         G++D++    ++RLE +   T P++   D
Sbjct: 125 MTQRLLKRGETSGRVDDNEETIKKRLETYYNATEPVISFYD 165

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth (By similarity). May provide a mechanism to buffer the adenylate energy charge for sperm motility.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q20140|KAD1_CAEEL Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 13/178 (7%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           + ++VGGPGS K   C K++  Y   T +S G LLR   +    G    +++ + + +G 
Sbjct: 22  IFFIVGGPGSGKGTQCDKIVAKY-GLTHLSSGDLLR---DEVKSGSPRGAQLTAIMESGA 77

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS--- 343
            V  +VVLD+V   M K     + G +IDG+PRE++Q   FE++ Q    ++  D +   
Sbjct: 78  LVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQEAKLVLFFDVAEET 137

Query: 344 --KLVLHK----GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQV 395
             K +LH+    G+ D++    ++RL  F   T P++   + + +L  ++ +  +  +
Sbjct: 138 LVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAEGSVDDI 195

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
242011152	530	conserved hypothetical protein [Pediculu	0.778	0.764	0.474	1e-106
194765447	613	GF22148 [Drosophila ananassae] gi|190617	0.801	0.680	0.470	1e-105
195156633	559	GL25546 [Drosophila persimilis] gi|19411	0.803	0.747	0.477	1e-105
125984127	559	GA21867 [Drosophila pseudoobscura pseudo	0.803	0.747	0.477	1e-105
195473207	563	GE10676 [Drosophila yakuba] gi|194174988	0.790	0.730	0.463	1e-104
157122970	530	hypothetical protein AaeL_AAEL009334 [Ae	0.811	0.796	0.458	1e-104
194858803	563	GG24043 [Drosophila erecta] gi|190661127	0.803	0.742	0.471	1e-104
340720823	629	PREDICTED: adenylate kinase isoenzyme 5-	0.723	0.597	0.472	1e-104
442626936	646	CG9541, isoform D [Drosophila melanogast	0.803	0.647	0.451	1e-104
380029027	627	PREDICTED: adenylate kinase isoenzyme 5-	0.786	0.652	0.452	1e-103

>gi|242011152|ref|XP_002426319.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510396|gb|EEB13581.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/436 (47%), Positives = 286/436 (65%), Gaps = 31/436 (7%)

Query: 28  VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVIL 87
           +  E++DFS LSSKTVTEVLMLEMKM+PAAK +LISGYPR+MRDVVEY++KI+ ++GVIL
Sbjct: 80  MGNEMRDFSSLSSKTVTEVLMLEMKMAPAAKTYLISGYPRSMRDVVEYAEKIQVVSGVIL 139

Query: 88  IAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPV 147
           +AW+Q +LE+QIDYGAK+GHV+LSLA+MEL NFY++V PV D+FD+RGMLIA+NGERNP 
Sbjct: 140 VAWQQKVLEKQIDYGAKIGHVVLSLAKMELNNFYKHVMPVVDYFDERGMLIAINGERNPA 199

Query: 148 EVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPN 207
           EVY DFR+AVL+I+       GS   ++ N    PE     ++S    V           
Sbjct: 200 EVYKDFRSAVLRII-------GSTEQMDSNT---PEGKEEILESFIDEVAEDGGDGGG-- 247

Query: 208 GVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI 267
                    +++ E+  P V+WV+GGPGS+K  +CQK ++  P W  IS+G+LLR   + 
Sbjct: 248 -------EGMRTKEKVYPPVIWVLGGPGSNKGSLCQKAVRQVPGWAHISVGRLLRAATDA 300

Query: 268 EDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDF 327
            D        +K ++SAG+ V +  VL++V   M    Y++A GI++DGFPR+M Q+ +F
Sbjct: 301 NDFNANDTFVLKQAISAGELVPQTYVLNLVEKHM--NAYSDAKGILMDGFPRDMHQVNEF 358

Query: 328 ENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVD 387
           E KY+  P  IL+DCSKL L KG++D+SV+AFR+RLELFR+ +LPML+ +D E RLT+VD
Sbjct: 359 EAKYKQQPNAILLDCSKLQLGKGRMDDSVAAFRKRLELFRQISLPMLKILDSENRLTVVD 418

Query: 388 GDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTALSLDNDNTVVHDLEGGAGEPVN- 446
           GDT  P+V++EF R+       + N +          L+  ND     D+E     PV  
Sbjct: 419 GDTDSPEVQDEFFRLFLNHTKQINNNSEREIGVQSKPLNYQND-----DME--YSRPVTR 471

Query: 447 --IPNGFGPPRENRTV 460
             IPNG  P   N+ +
Sbjct: 472 TIIPNGNLPSAANKLI 487

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194765447|ref|XP_001964838.1| GF22148 [Drosophila ananassae] gi|190617448|gb|EDV32972.1| GF22148 [Drosophila ananassae]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/446 (47%), Positives = 292/446 (65%), Gaps = 29/446 (6%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct: 96  THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 155

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 156 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 215

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKILNK--------NNVVPGSKPL----VNGNAIPVP 182
            ML+AVNGER P EVY DFRTAVL IL+         N V  G+  +      G A+   
Sbjct: 216 DMLLAVNGERAPTEVYKDFRTAVLDILSTLENQEAVMNGVTEGTAAVSTTDTTGTALAKD 275

Query: 183 ETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSV----ERNTPLVVWVVGGPGSSK 238
            TL P   ++ A + +        +GVV     K++      E N P ++WV+GGPGS+K
Sbjct: 276 LTLNPTGGAV-AIMKTGTTIADDDSGVVITQQPKLRPEAGLDESNLPPIIWVIGGPGSNK 334

Query: 239 SEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR---IKSSVSAGDFVNRDVVLD 295
           + +C K +     W  IS+G+LLR   NI D     N+    +K +++AGD      +  
Sbjct: 335 ATLCLKAVGLNQGWAHISVGRLLR---NITDSAPRANTESFAVKEALAAGDMAPEKSLNQ 391

Query: 296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNS 355
           ++   +++ +  +  GI+IDG+PR + Q+  FENKY+  PP+IL+DCSKL L +G+ID++
Sbjct: 392 LLETNLRQLQ--DRTGIIIDGYPRNLQQVKYFENKYKQRPPIILLDCSKLQLGRGRIDDT 449

Query: 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTAR 415
           VS+FRRRLELFRE+TLPML+ +D   RL IVDGDT  P V+ EFER+++  I  L N   
Sbjct: 450 VSSFRRRLELFREQTLPMLKTLDSSNRLQIVDGDTDSPSVQREFERLIRSHIQRLLNQGE 509

Query: 416 PRDKR---NHTALSLDNDNTVVHDLE 438
             D      +  +  +  + ++HDLE
Sbjct: 510 YTDAMEPLGNQMMRNEQTDAILHDLE 535

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195156633|ref|XP_002019201.1| GL25546 [Drosophila persimilis] gi|194115354|gb|EDW37397.1| GL25546 [Drosophila persimilis]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/448 (47%), Positives = 292/448 (65%), Gaps = 30/448 (6%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct: 42  THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 101

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 102 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 161

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKIL----NKNNVVPGSKPLVNGNAIPVPETLPPQV- 189
            ML+AVNGER P EVY DFRTAVL IL    N+  ++ G     N        TLP    
Sbjct: 162 DMLLAVNGERAPTEVYKDFRTAVLDILSTLENQEAMMNGVTDDNNATGTDTETTLPLAAD 221

Query: 190 ----QSIAA---TVHSPPKHFTRPN---GVV--SEPYRKIKSVERNT-PLVVWVVGGPGS 236
               QS+       H      T  +   GVV   +P RK  + +    P ++WV+GGPGS
Sbjct: 222 LAIDQSVGLDRNVGHHQGGGTTSADDDSGVVVTQQPKRKPDTADLPVLPPIIWVIGGPGS 281

Query: 237 SKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR---IKSSVSAGDFVNRDVV 293
           +K+ +C K +   P W  IS+G+LLR   NI D     N+    +K +++AGD      +
Sbjct: 282 NKATLCLKAVGLNPGWAHISVGRLLR---NITDSAPRANTESYAVKEALAAGDMAPEKSL 338

Query: 294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQID 353
             ++ + ++  +  +  GI+IDG+PR + Q+  FENKYQ  PP+IL+DCSKL L +G+ID
Sbjct: 339 NQLLESNLR--QLLDRTGIIIDGYPRNLQQVKYFENKYQQRPPIILLDCSKLQLGRGRID 396

Query: 354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENT 413
           ++VS+FRRRLELFRE+TLPML+ MD   RL IVDGDT  P V+ EFER+++  I  L N 
Sbjct: 397 DTVSSFRRRLELFREQTLPMLKTMDNSNRLQIVDGDTDSPSVQREFERLIRNHIQQLLNR 456

Query: 414 ARPRDKR---NHTALSLDNDNTVVHDLE 438
           +   D      +  +  +  + ++HDLE
Sbjct: 457 SDDTDATAPLGNQMMRNEQTDAILHDLE 484

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125984127|ref|XP_001355828.1| GA21867 [Drosophila pseudoobscura pseudoobscura] gi|54644145|gb|EAL32887.1| GA21867 [Drosophila pseudoobscura pseudoobscura]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/448 (47%), Positives = 292/448 (65%), Gaps = 30/448 (6%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct: 42  THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 101

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 102 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 161

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKIL----NKNNVVPGSKPLVNGNAIPVPETLPPQV- 189
            ML+AVNGER P EVY DFRTAVL IL    N+  ++ G     N        TLP    
Sbjct: 162 DMLLAVNGERAPTEVYKDFRTAVLDILSTLENQEAMMNGVTDDNNATVTDTETTLPLAAD 221

Query: 190 ----QSIAA---TVHSPPKHFTRPN---GVV--SEPYRKIKSVERNT-PLVVWVVGGPGS 236
               QS+       H      T  +   GVV   +P RK  + +    P ++WV+GGPGS
Sbjct: 222 LAIDQSVGLDRNVGHHQGGGTTSADDDSGVVVTQQPKRKPDTADLPVLPPIIWVIGGPGS 281

Query: 237 SKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR---IKSSVSAGDFVNRDVV 293
           +K+ +C K +   P W  IS+G+LLR   NI D     N+    +K +++AGD      +
Sbjct: 282 NKATLCLKAVGLNPGWAHISVGRLLR---NITDSAPRANTESYAVKEALAAGDMAPEKSL 338

Query: 294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQID 353
             ++ + ++  +  +  GI+IDG+PR + Q+  FENKYQ  PP+IL+DCSKL L +G+ID
Sbjct: 339 NQLLESNLR--QLLDRTGIIIDGYPRNLQQVKYFENKYQQRPPIILLDCSKLQLGRGRID 396

Query: 354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENT 413
           ++VS+FRRRLELFRE+TLPML+ MD   RL IVDGDT  P V+ EFER+++  I  L N 
Sbjct: 397 DTVSSFRRRLELFREQTLPMLKTMDNSNRLQIVDGDTDSPSVQREFERLIRNHIQQLLNR 456

Query: 414 ARPRDKR---NHTALSLDNDNTVVHDLE 438
           +   D      +  +  +  + ++HDLE
Sbjct: 457 SDDTDATAPLGNQMMRNEQTDAILHDLE 484

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195473207|ref|XP_002088887.1| GE10676 [Drosophila yakuba] gi|194174988|gb|EDW88599.1| GE10676 [Drosophila yakuba]

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/457 (46%), Positives = 293/457 (64%), Gaps = 46/457 (10%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct: 42  THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 101

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 102 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 161

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAA 194
            ML+AVNGER P EVY DFRTAVL IL   + +   + ++NG    V E +       A 
Sbjct: 162 DMLLAVNGERAPTEVYKDFRTAVLDIL---STLENQEAVMNG----VTEDIATNASETAG 214

Query: 195 TVHSPPKHFTR----PNGVVSEPYRKIKSVERNT-----------------------PLV 227
           TV +      R    PNG V+       S + ++                       P +
Sbjct: 215 TVLARDLAIERIDGGPNGAVTALKTGTTSADDDSGVVVTQQPKLRLAAGPGEPGSDLPPI 274

Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR---IKSSVSA 284
           +WV+GGPGS+K+ +C K +   P W  IS+G+LLR   NI D     N+    +K +++A
Sbjct: 275 IWVIGGPGSNKATLCLKAVGLNPGWAHISVGRLLR---NITDSAPRANTESFAVKEALAA 331

Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK 344
           GD      +  ++   +++ +  +  GI++DG+PR + Q+  FENKY+  PP+IL+DCSK
Sbjct: 332 GDMAPEKSLNQLLETNLRQLR--DRTGIIVDGYPRNLQQVKYFENKYKQLPPIILLDCSK 389

Query: 345 LVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404
           L L +G+ID++VS+FRRRLELFRE+TLPML+ +D   RL IVDGDT  P V+ EFER+++
Sbjct: 390 LQLGRGRIDDTVSSFRRRLELFREQTLPMLKILDTSNRLQIVDGDTDSPSVQREFERLIR 449

Query: 405 KIIDDLEN-TARPRDKRNHTALSLDNDNT--VVHDLE 438
             I  L N T    D  N     + N+ T  ++HDLE
Sbjct: 450 NHIQRLLNKTEDIDDSANLGNQMMRNEQTDAILHDLE 486

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157122970|ref|XP_001653790.1| hypothetical protein AaeL_AAEL009334 [Aedes aegypti]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/451 (45%), Positives = 289/451 (64%), Gaps = 29/451 (6%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSS+TVTEVLMLEMKMSPAAK +L+SGYPR+MRDVVE
Sbjct: 42  THINMMDLLQQYAIGNDMQDFSQLSSRTVTEVLMLEMKMSPAAKTYLVSGYPRSMRDVVE 101

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ INGVILI+WRQ++L+RQIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 102 YSEKIQVINGVILISWRQTILQRQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 161

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKILNKN-------NVVPGSKPLVNGNAIPVPETLPP 187
            MLIA+NGER P EVY DFR+AVL IL          N V G   + N N  P P    P
Sbjct: 162 DMLIAINGERAPSEVYKDFRSAVLDILGAQENQEALLNGVAGMVEINNRNRSPSPPPALP 221

Query: 188 QVQSIAATVHSPPKHFTR---PNGVVSEPY----RKIKSVERNTPL-------VVWVVGG 233
              +  A   +      R   P   +  P     R+   V+  T L       ++WV+GG
Sbjct: 222 TSPAAMAGNAAAAAQLIRQQQPRASLGVPAPAAPRQDIPVQHGTSLRPGQIPPIIWVIGG 281

Query: 234 PGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV 293
           PGS+K+ +C K +   P W   S+G+LLR  A  +      N  +K +++AG+ V +  +
Sbjct: 282 PGSNKATLCLKTVGINPGWGHFSVGRLLRAIAESDPRVGTDNYAVKEAITAGEMVPKKSI 341

Query: 294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQID 353
             ++  E +  + ++  G++IDG+PR+M Q+ DFE KY   PP+IL+DCSKL L +G++D
Sbjct: 342 EQLI--ENQLAQLSDKRGVIIDGYPRDMKQVRDFEQKYHQSPPIILLDCSKLQLGRGRLD 399

Query: 354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERV----LKKIIDD 409
           ++VS+FRRRLELFRE TLPML+ MD   RLTIVDGDT  P V+ EFER+    ++K++ +
Sbjct: 400 DTVSSFRRRLELFRELTLPMLKEMDTAGRLTIVDGDTDSPTVQREFERIVRDNIQKVLSE 459

Query: 410 LENTARPRD-KRNHTALSLDNDNTVVHDLEG 439
                 P   ++   + +  N + +VHDL+ 
Sbjct: 460 TNRDITPNAIQQGRNSAAQKNADAIVHDLDA 490

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194858803|ref|XP_001969260.1| GG24043 [Drosophila erecta] gi|190661127|gb|EDV58319.1| GG24043 [Drosophila erecta]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/450 (47%), Positives = 291/450 (64%), Gaps = 32/450 (7%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct: 42  THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 101

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 102 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 161

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKIL----NKNNVVPGSKPLVNGNAIPVPETLPPQVQ 190
            ML+AVNGER P EVY DFRTAVL IL    N+  V+ G       NA     T+  +  
Sbjct: 162 DMLLAVNGERAPTEVYKDFRTAVLDILSTLENQEAVMNGVTEDSAANASETAGTVLARDL 221

Query: 191 SIAATVHSPPKHFTR----------PNGVVSEPYRKIKSVE------RNTPLVVWVVGGP 234
           +I      P    T            +GVV     K++          + P ++WV+GGP
Sbjct: 222 AIERMDGGPNGGVTALKTGTTSADDDSGVVVTQQPKLRQAAGPDELGSDLPPIIWVIGGP 281

Query: 235 GSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR---IKSSVSAGDFVNRD 291
           GS+K+ +C K +   P W  IS+G+LLR   NI D     N+    +K +++AGD     
Sbjct: 282 GSNKATLCLKAVGLNPGWAHISVGRLLR---NITDSAPRANTESFAVKEALAAGDMAPEK 338

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQ 351
            +  ++   +++ +  +  GI++DG+PR + Q+  FENKY+  PP+IL+DCSKL L +G+
Sbjct: 339 SLNQLLETNLRQLR--DRTGIIVDGYPRNLQQVKYFENKYKQRPPIILLDCSKLQLGRGR 396

Query: 352 IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLE 411
           ID++VS+FRRRLELFRE+TLPML+ +D   RL IVDGDT  P V+ EFER+++  I  L 
Sbjct: 397 IDDTVSSFRRRLELFREQTLPMLKILDTSNRLQIVDGDTDSPSVQREFERLIRNHIQRLL 456

Query: 412 N-TARPRDKRNHTALSLDNDNT--VVHDLE 438
           N T    D  N     + N+ T  ++HDLE
Sbjct: 457 NKTDDIDDSANLGNQMMRNEQTDAILHDLE 486

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720823|ref|XP_003398829.1| PREDICTED: adenylate kinase isoenzyme 5-like [Bombus terrestris]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/402 (47%), Positives = 276/402 (68%), Gaps = 26/402 (6%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DF  LSSKTV EVLMLE+KMSP +K FL+SGYPRNMRDVVE
Sbjct: 85  THINMMDLLQQYALGNDMQDFGQLSSKTVAEVLMLEIKMSPGSKVFLVSGYPRNMRDVVE 144

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           Y++KIK +NGVIL++WRQ +LERQID+GA+LG V++ LARMEL NFY+NV PV ++FDQ 
Sbjct: 145 YAEKIKIVNGVILVSWRQEILERQIDFGAQLGQVVIELARMELYNFYRNVMPVAEYFDQS 204

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKILN-KNNVVPG---SKPL-----VNGNAIPVPETL 185
           GML+ +NGERNP EVY DFR AV KIL   N+ + G   S+PL     V      +P++ 
Sbjct: 205 GMLLEINGERNPSEVYVDFREAVFKILGLSNDEIQGKNASQPLKTEVEVERRKESIPKSS 264

Query: 186 PPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKV 245
            P  + +A     P +       V  +P +      +  P  +WV+GGPGS+K  +C + 
Sbjct: 265 SPMEEVLAQLTQIPVE-------VNVKPIKTAIKSRKGLPAFIWVIGGPGSNKENLCTQA 317

Query: 246 LQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305
           +++ P W QIS+G LLR  A+        N+ +  ++ +G+ V +D+V+ +V  ++   +
Sbjct: 318 VRNMPGWVQISIGGLLRAMAS-------SNTIVNDAIVSGETVPQDIVMQVVEQQIMLNR 370

Query: 306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLEL 365
            T  DGIVIDG+PR+++Q+ +FENK+   PP++L+DCSKL L +G+ID++VSAFR+RLEL
Sbjct: 371 DT--DGIVIDGYPRDLNQVQEFENKFGQQPPLVLLDCSKLQLGRGRIDDNVSAFRKRLEL 428

Query: 366 FRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407
           FRE +LPML+ +D E RLTI+DGDT +P V++EF   L +++
Sbjct: 429 FREVSLPMLKTLDNENRLTIIDGDTDVPSVQQEFAAALYQLM 470

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442626936|ref|NP_001260273.1| CG9541, isoform D [Drosophila melanogaster] gi|440213586|gb|AGB92809.1| CG9541, isoform D [Drosophila melanogaster]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/481 (45%), Positives = 297/481 (61%), Gaps = 63/481 (13%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct: 96  THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 155

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct: 156 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 215

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKIL----NKNNVVPGSKPLVNG-----NAIPVPETL 185
            ML+AVNGER P EVY DFRTAVL IL    N+  V+ G   +  G      +I   +T 
Sbjct: 216 DMLLAVNGERAPTEVYKDFRTAVLDILSTLENQEAVMNGVTGMGRGIHDIPGSIVSVDTA 275

Query: 186 PPQVQS---------------IAATVHSPPKHFTR----PNGVVSEPYRKIKSVERNT-- 224
           P Q Q                 A TV +      R    PNG V+       S + ++  
Sbjct: 276 PSQAQQGTQIAEDNDVTNASETAGTVLARDLAIERMDGGPNGAVTALKTGTTSADDDSGV 335

Query: 225 ---------------------PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY 263
                                P ++WV+GGPGS+K+ +C K +   P W  IS+G+LLR 
Sbjct: 336 VVTQQPKLRQAAGPDESGSDLPPIIWVIGGPGSNKATLCLKAVGLNPGWAHISVGRLLR- 394

Query: 264 FANIEDDGEGLNSR---IKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPRE 320
             NI D     N+    +K +++AGD      +  ++   +++ +  +  GI++DG+PR 
Sbjct: 395 --NITDSAPRANTESFAVKEALAAGDMAPEKSLNQLLETNLRQLR--DRTGIIVDGYPRN 450

Query: 321 MSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVE 380
           + Q+  FENKY+  PP+IL+DCSKL L +G+ID++VS+FRRRLELFRE+TLPML+ +D  
Sbjct: 451 LQQVKYFENKYKQRPPIILLDCSKLQLGRGRIDDTVSSFRRRLELFREQTLPMLKILDTS 510

Query: 381 TRLTIVDGDTQLPQVREEFERVLKKIIDDLEN-TARPRDKRNHTALSLDNDNT--VVHDL 437
            RL IVDGDT  P V+ EFER+++  I  L N T    D  N     + N+ T  ++HDL
Sbjct: 511 NRLQIVDGDTDSPSVQREFERLIRNHIQRLLNKTDDIDDSANLGNQMMRNEQTDAILHDL 570

Query: 438 E 438
           E
Sbjct: 571 E 571

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029027|ref|XP_003698184.1| PREDICTED: adenylate kinase isoenzyme 5-like [Apis florea]

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/444 (45%), Positives = 293/444 (65%), Gaps = 35/444 (7%)

Query: 16  SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
           +H N + +   + +  +++DF  LSSKTV EVLMLE+KMSP +K FL+SGYPRNMRDVVE
Sbjct: 85  THINMMDLLQQYALGNDMQDFGQLSSKTVAEVLMLEIKMSPGSKVFLVSGYPRNMRDVVE 144

Query: 75  YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
           Y++KIK +NGVIL++WRQ +LERQID+GA+LG V++ LARMEL NFY+NV PV ++FDQ 
Sbjct: 145 YAEKIKIVNGVILVSWRQEILERQIDFGAQLGQVVIELARMELYNFYRNVMPVAEYFDQS 204

Query: 135 GMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQ---- 190
           GML+ VNGERNP EVY DFR AV KIL  +     S  + N N   VP++L  +V+    
Sbjct: 205 GMLLEVNGERNPNEVYVDFREAVFKILGLS-----SDEVQNKN---VPQSLEAEVEVERR 256

Query: 191 -SIAATVHSPPKHFTR----PNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKV 245
                   SP K  ++    P  V  +P +      +  P  +WV+GGPGS+K  +C + 
Sbjct: 257 KESTPKSPSPKKEVSQITQLPIIVNVKPTKTADKPRKGLPAFIWVIGGPGSNKENLCTQA 316

Query: 246 LQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305
           +++ P W Q+S+G LLR  A+        N+ +  ++ +G+ V++D+V+ +V  ++   +
Sbjct: 317 VRNMPGWVQVSIGGLLRTMAS-------SNTIVNEAIVSGEMVSQDIVMQVVEQQIILNR 369

Query: 306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLEL 365
            T  DGIVIDG+PR+++Q+ +FE+K+   PP++L+DCSKL L +G++D++VSAFR+RLEL
Sbjct: 370 DT--DGIVIDGYPRDLNQVHEFEDKFGQQPPLVLLDCSKLQLGRGRLDDNVSAFRKRLEL 427

Query: 366 FRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTAL 425
           FRE +LPML+A+D E RLTI+DGDT +P V++EF   L ++   +  T R  +   H   
Sbjct: 428 FREVSLPMLKALDNENRLTIIDGDTDVPSVQQEFAAALYQL---MTQTRRKEENDPH--- 481

Query: 426 SLDNDNTVVHDLEGGAGEPVNIPN 449
             D ++ +V D E      V IPN
Sbjct: 482 --DPESQIVQDNENNTKSNVLIPN 503

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
FB|FBgn0032083	562	CG9541 [Drosophila melanogaste	0.303	0.281	0.648	2.7e-92
WB|WBGene00008746	729	F13E6.2 [Caenorhabditis elegan	0.396	0.282	0.292	2.1e-25
UNIPROTKB|E2REX1	561	AK5 "Uncharacterized protein"	0.551	0.511	0.263	4.3e-20
UNIPROTKB|Q9Y6K8	562	AK5 "Adenylate kinase isoenzym	0.551	0.510	0.263	1.6e-19
MGI|MGI:2677491	562	Ak5 "adenylate kinase 5" [Mus	0.553	0.512	0.267	4.5e-18
RGD|1590818	562	Ak5 "adenylate kinase 5" [Ratt	0.315	0.291	0.264	5.1e-18
UNIPROTKB|E1BUE7	573	AK5 "Uncharacterized protein"	0.251	0.228	0.272	9.4e-18
UNIPROTKB|A4IFD0	562	Ak5 "Adenylate kinase isoenzym	0.251	0.233	0.286	4.2e-17
ZFIN|ZDB-GENE-030131-8256	563	ak5 "adenylate kinase 5" [Dani	0.561	0.518	0.226	3.6e-16
UNIPROTKB|P05081	194	AK1 "Adenylate kinase isoenzym	0.223	0.597	0.36	3e-13

FB|FBgn0032083 CG9541 [Drosophila melanogaster (taxid:7227)]

 Score = 537 (194.1 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
 Identities = 105/162 (64%), Positives = 134/162 (82%)

Query:    16 SHRNPLKMFNLF-VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE 74
             +H N + +   + +  +++DFS LSSKTVTEVLMLEMKM+PAAKA+LISGYPR+MRDVVE
Sbjct:    42 THINMMDLLQQYAMGNDMQDFSQLSSKTVTEVLMLEMKMAPAAKAYLISGYPRSMRDVVE 101

Query:    75 YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134
             YS+KI+ +NGVILI+WRQS+L++QIDYGAKLGHV+LSLA+MEL NF++NV PV D+FDQ 
Sbjct:   102 YSEKIQVVNGVILISWRQSVLQKQIDYGAKLGHVVLSLAKMELENFFKNVMPVADYFDQS 161

Query:   135 GMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKPLVNG 176
              ML+AVNGER P EVY DFRTAVL IL+    +   + ++NG
Sbjct:   162 DMLLAVNGERAPTEVYKDFRTAVLDILS---TLENQEAVMNG 200

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

WB|WBGene00008746 F13E6.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 231 (86.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 65/222 (29%), Positives = 116/222 (52%)

Query:   223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV 282
             N P+++ V+G PGS K+++ +++ Q Y  +T +S+G +LR   N E + E +  ++   +
Sbjct:   512 NAPVIL-VLGAPGSQKNDISRRIAQKYDGFTMLSMGDILRKKINNEKNDE-MWDKVSKKM 569

Query:   283 SAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDC 342
             + GD +   +   ++Y E+  ++ T   G VI+G+P+   QL+D E+  Q     ILIDC
Sbjct:   570 NNGDPIPTKMCRTVLYEELH-SRGTSNWGYVIEGYPKSPDQLVDLEHSLQRTDLAILIDC 628

Query:   343 SKL----VLHKGQIDNSVS-----AXXXXXXXXXXXTLPMLRAMDVETRLTIVDGDTQLP 393
             ++     V++K   +N  S     A           TLPML+ +D + +L +VDGD    
Sbjct:   629 TEQFCLEVINKRNRENKRSDDDSDAVRSRMEYFKKNTLPMLKTLDDKGKLRVVDGDADPD 688

Query:   394 QVREEFERVLKKII---DDLENTARPRDKRNHTALSLDNDNT 432
              V +E  +V+ + +   DD + T+    K+     SL N +T
Sbjct:   689 TVFKEVVQVIDRTLYVEDDGDGTSLGDSKKGTLNSSL-NSST 729

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

UNIPROTKB|E2REX1 AK5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 81/307 (26%), Positives = 144/307 (46%)

Query:    42 TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
             T+TE+    M++ P  +  +I G+PR++   + + D+I T + V+ +A   Q L ER + 
Sbjct:   198 TITEIKQKLMQI-PDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLK 256

Query:   101 YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV- 157
                + G     L   +  L NF QN  P+  +F ++G+++  + +R+  EV+ D   AV 
Sbjct:   257 RAEQQGRPDDNLKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVD 316

Query:   158 LKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPN-GVVSEPYRK 216
              K+        GS  L     +   ET+                 F     G   E  RK
Sbjct:   317 SKLFPNKEAAAGSSDLDPSMMLDTGETIDTG-SDYEDQGDDQLNVFGEDTMGGFMEDLRK 375

Query:   217 IKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNS 276
              K        +++++GGPGS K   C+K+++ Y  +T +S G+LLR   + E +   L  
Sbjct:   376 CK--------IIFMIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLRNELSSESERSKL-- 424

Query:   277 RIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP 336
              I+  +  GD V   ++L+++  E      ++  G +IDG+P+E+ Q  +F  +      
Sbjct:   425 -IRDIMDRGDPVPSGIILELL-KEAMGASLSDTKGFLIDGYPQEVKQGEEFGRRIGDPHL 482

Query:   337 MILIDCS 343
             +I +DCS
Sbjct:   483 VICMDCS 489

GO:0019206 "nucleoside kinase activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

UNIPROTKB|Q9Y6K8 AK5 "Adenylate kinase isoenzyme 5" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 81/307 (26%), Positives = 141/307 (45%)

Query:    42 TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
             T+TE+    M++ P  +  +I G+PR++   + + D+I T + V+ +A   Q L ER + 
Sbjct:   198 TITEIKQKLMQI-PDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLK 256

Query:   101 YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV- 157
                + G     +   +  L NF QN  P+  +F ++G+++  + +R+  EV+ D   AV 
Sbjct:   257 RAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVD 316

Query:   158 LKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPN-GVVSEPYRK 216
              K+        GS  L     +   E +                 F     G   E  RK
Sbjct:   317 NKLFPNKEAAAGSSDLDPSMILDTGEIIDTG-SDYEDQGDDQLNVFGEDTMGGFMEDLRK 375

Query:   217 IKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNS 276
              K        +++++GGPGS K   C+K+++ Y  +T +S G+LLR     E +   L  
Sbjct:   376 CK--------IIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLREELASESERSKL-- 424

Query:   277 RIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP 336
              I+  +  GD V   +VL+++  E       +  G +IDG+PRE+ Q  +F  +      
Sbjct:   425 -IRDIMERGDLVPSGIVLELL-KEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQL 482

Query:   337 MILIDCS 343
             +I +DCS
Sbjct:   483 VICMDCS 489

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=TAS

GO:0006173 "dADP biosynthetic process" evidence=TAS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0019206 "nucleoside kinase activity" evidence=EXP

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

MGI|MGI:2677491 Ak5 "adenylate kinase 5" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 4.5e-18, P = 4.5e-18
 Identities = 82/306 (26%), Positives = 135/306 (44%)

Query:    42 TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
             T+TE+    M++ P  +  +I G+PR++   + + D+I T + V+ +A   Q L ER   
Sbjct:   198 TITEIKQKLMQI-PDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLQK 256

Query:   101 YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158
                + G     L   +  L NF QN  P+  +F ++G+++  + +R+   V+ D   AV 
Sbjct:   257 RAEQQGRPDDNLKATQRRLVNFKQNAAPLVKYFQEKGLIVTFDADRDEDAVFHDISVAVD 316

Query:   159 KILNKNNVVP-GSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKI 217
               L  N   P  S  L         E +                      G   E  RK 
Sbjct:   317 SKLFPNKEAPMDSSDLDPSMMFDAGEIIDTGSDYDNQDDDQLNVFGEDTEGGFMEDLRKC 376

Query:   218 KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR 277
             K        +++++GGPGS K   C+K+ + Y  +T +S G+LLR     E +   L   
Sbjct:   377 K--------IIFLMGGPGSGKGTQCEKLAEKY-GFTHLSTGELLRQELTSESERSKL--- 424

Query:   278 IKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPM 337
             I+  +  GD V   VVL+++  E          G +IDG+PRE+ Q  +F  +      +
Sbjct:   425 IRDIMERGDLVPSGVVLELL-KEAMVASLGNTKGFLIDGYPREVKQGEEFGRRIGDPHLV 483

Query:   338 ILIDCS 343
             I +DCS
Sbjct:   484 ICMDCS 489

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

RGD|1590818 Ak5 "adenylate kinase 5" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
 Identities = 47/178 (26%), Positives = 85/178 (47%)

Query:   227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
             +++++GGPGS K   C+K+ + Y  +T +S G+LLR     E +   L   I+  +  GD
Sbjct:   378 IIFLMGGPGSGKGTQCEKLAEKY-GFTHLSTGELLRQELTSESERSKL---IRDIMERGD 433

Query:   287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS--- 343
              V   VVL+++  E          G +IDG+PRE+ Q  +F  +      +I +DCS   
Sbjct:   434 LVPSGVVLELL-KEAMVASLGNTKGFLIDGYPREVKQGEEFGRRIGEPQLVICMDCSADT 492

Query:   344 --KLVLHKGQI----DNSVSAXXXXXXXXXXXTLPMLRAMDVETRLTIVDGDTQLPQV 395
                 +L + Q     ++S  +           ++P++   + +T+L  V+ +    QV
Sbjct:   493 MTNRLLQRSQSSQRGEDSAKSVAKRLEAYHRASIPVIAYYETKTQLQKVNAEGTPDQV 550

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0019206 "nucleoside kinase activity" evidence=ISO

UNIPROTKB|E1BUE7 AK5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 9.4e-18, Sum P(2) = 9.4e-18
 Identities = 37/136 (27%), Positives = 71/136 (52%)

Query:    42 TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
             T+TE+    M++ P  +  +I G+PR++   + + D+I T + V+ +A   Q L ER + 
Sbjct:   198 TITEIKQRLMQI-PDEEGIVIDGFPRDVAQAISFEDQICTPDLVVFLACSNQRLKERLLK 256

Query:   101 YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV- 157
                + G     L   +  L NF QN  P+  +F ++G+++  + +R+  EV++D  +AV 
Sbjct:   257 RAEQQGRPDDNLKATQRRLMNFKQNAVPLVKYFQEKGLIVTFDADRDEEEVFSDISSAVD 316

Query:   158 LKILNKNNVVPGSKPL 173
              K+    +   G+  L
Sbjct:   317 NKLFANKDAAAGTNEL 332

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0019206 "nucleoside kinase activity" evidence=IEA

UNIPROTKB|A4IFD0 Ak5 "Adenylate kinase isoenzyme 5" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
 Identities = 39/136 (28%), Positives = 67/136 (49%)

Query:    42 TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW-RQSLLERQID 100
             T+TE+    M+M P     +I G+PR++   + + D+I T + V+ +A   Q L ER + 
Sbjct:   198 TITEIKQKLMQM-PDEVGIVIDGFPRDVAQALSFEDQICTPDLVVFLACTNQRLKERLLK 256

Query:   101 YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV- 157
                + G     L   +  L NF QN  P+  +F ++G+++  + +R+  EV+ D   AV 
Sbjct:   257 RAEQQGRPDDNLKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVD 316

Query:   158 LKILNKNNVVPGSKPL 173
              K+        GS  L
Sbjct:   317 SKLFPNKEAAAGSSDL 332

GO:0005737 "cytoplasm" evidence=IEA

GO:0019206 "nucleoside kinase activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030131-8256 ak5 "adenylate kinase 5" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 3.6e-16, P = 3.6e-16
 Identities = 71/314 (22%), Positives = 152/314 (48%)

Query:    42 TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDY 101
             T+TE+    MK+ P A   +I G+PR++   + + D++ T + V+ +A     L+ +++ 
Sbjct:   199 TITEIKQKIMKI-PEASGIVIDGFPRDVGQALSFEDQVCTPDLVVFLACSNQRLKERLEK 257

Query:   102 GAKL-GHVILSLARME--LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158
              A+  G    +   ++  L NF QN  P+  +F ++G+++ ++ +R+  EV+ D    V 
Sbjct:   258 RAEQQGRPDDNPKAIDRRLTNFKQNAIPLVKYFQEKGLIVTLDADRDEEEVFYDISMTV- 316

Query:   159 KILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIK 218
                  N + P  +P+   + + +  +L     S+      P K   + +  V+E    I 
Sbjct:   317 ----DNKLFPTKEPVAGPSELDL--SLIADSSSLTDV---PAKFDEQADEEVAEYAEAIG 367

Query:   219 S---VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN 275
                 +E     V++V+GGPGS K+   +K+ + Y +  ++  G +L   + ++   E   
Sbjct:   368 ESFPMETKKSKVIFVIGGPGSGKALQSEKIEERY-SLKRLCPGDIL--CSELQSHSER-G 423

Query:   276 SRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP 335
               ++  +  G+ +  D +LD++   M  T   +  G ++ GFP+   Q  ++E K     
Sbjct:   424 RFLRDLLERGEQLPEDTLLDLLCEAMAST-VRQGKGFLVTGFPKNEKQAQEYEAKMGQPD 482

Query:   336 PMILIDCSKLVLHK 349
              ++L++CS  ++ +
Sbjct:   483 IVLLLECSADIMSR 496

GO:0005524 "ATP binding" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P05081 AK1 "Adenylate kinase isoenzyme 1" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 45/125 (36%), Positives = 70/125 (56%)

Query:   227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
             +++VVGGPGS K   C+K++  Y  +T +S G LLR  A +    E    ++++ +  G+
Sbjct:    11 IIFVVGGPGSGKGTQCEKIVHKY-GYTHLSTGDLLR--AEVSSGSER-GKKLQAIMEKGE 66

Query:   287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMIL--IDCSK 344
              V  D VLD++   M   K   + G +IDG+PRE+ Q  +FE K  I PP +L  +D  K
Sbjct:    67 LVPLDTVLDMLRDAML-AKADTSKGFLIDGYPREVKQGEEFEKK--IAPPTLLLYVDAGK 123

Query:   345 LVLHK 349
               + K
Sbjct:   124 ETMVK 128

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691
3rd Layer	2.7.4.3	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	520
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	9e-20
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	9e-20
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	1e-15
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	5e-15
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-12
TIGR01351	210	TIGR01351, adk, adenylate kinase	2e-12
pfam00406	186	pfam00406, ADK, Adenylate kinase	5e-12
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	7e-11
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	9e-10
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	1e-08
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	2e-07
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	5e-07
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	8e-07
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	7e-06
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	8e-06
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	2e-05
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	4e-05
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	4e-05
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	6e-05
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	0.002
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	0.002
pfam13207	114	pfam13207, AAA_17, AAA domain	0.004

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score = 86.9 bits (216), Expect = 9e-20
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 37/194 (19%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
            + ++G PGS K    +++ + Y     IS G LLR    I    E L  + K  + +G 
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKY-GLPHISTGDLLR--EEIASGTE-LGKKAKEYIDSGK 56

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP---MILIDCS 343
            V  ++V+ ++   +KK       G ++DGFPR + Q    +           +I +D  
Sbjct: 57  LVPDEIVIKLLKERLKKPD--CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP 114

Query: 344 KLVL-----------------HKGQIDN-----------SVSAFRRRLELFRERTLPMLR 375
             VL                 H G+ D            +    ++RLE+++E+T P++ 
Sbjct: 115 DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLID 174

Query: 376 AMDVETRLTIVDGD 389
               + +L  +DG 
Sbjct: 175 YYKKKGKLVEIDGS 188

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score = 86.8 bits (215), Expect = 9e-20
 Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 18/159 (11%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           ++++VGGPGS K   C+K+++ Y  +T +S G LLR        G     ++++ + +GD
Sbjct: 5   IIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLR---AEVASGSERGKQLQAIMESGD 60

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI--DCS- 343
            V  D VLD++   M     T + G +IDG+PRE+ Q  +FE +  I PP +++  DCS 
Sbjct: 61  LVPLDTVLDLLKDAMVAALGT-SKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSE 117

Query: 344 ----KLVLHKGQ----IDNSVSAFRRRLELFRERTLPML 374
               K +L + +    +D++    ++RLE + + T P++
Sbjct: 118 DTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVI 156

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 18/202 (8%)

Query: 210 VSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED 269
           +     +  S +  TP + +V+GGPGS K   C+K+++ +  +  +S G LLR    I  
Sbjct: 28  IITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDLLR--REIAS 84

Query: 270 DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN 329
           + E   + I +++  G  V  +V + ++  EM+ +   +    +IDGFPR     I FE 
Sbjct: 85  NSEH-GAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNK---FLIDGFPRTEENRIAFER 140

Query: 330 KYQIHPPMIL-IDCS-----KLVLHK--GQIDNSVSAFRRRLELFRERTLPMLRAMDVET 381
                P ++L  DC      K VL++  G++D+++   ++RL++F    LP++     + 
Sbjct: 141 IIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKG 200

Query: 382 RLTIVDGDTQLPQVREEFERVL 403
           +L  ++    +  V E FE+V 
Sbjct: 201 KLYTINA---VGTVDEIFEQVR 219

Length = 234

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 49/191 (25%), Positives = 101/191 (52%), Gaps = 21/191 (10%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY-FANIEDDGEGLNSRIKSSVSAG 285
           VV+V+GGPGS K   C K+++++  +T +S G LLR    +  ++GE + S IK+    G
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFG-FTHLSAGDLLRAEIKSGSENGELIESMIKN----G 55

Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN--KYQIHPPMIL-IDC 342
             V  +V + ++   ++      +   +IDGFPR    L  +E     +++   +L  DC
Sbjct: 56  KIVPSEVTVKLLKNAIQA---DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDC 112

Query: 343 S-----KLVLHKGQ----IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
                 K +L +GQ    +D+++ + ++R   + E+TLP++   + + ++  ++ +  + 
Sbjct: 113 PEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVE 172

Query: 394 QVREEFERVLK 404
           +V E+ E++  
Sbjct: 173 EVFEDVEKIFA 183

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 40/185 (21%), Positives = 86/185 (46%), Gaps = 21/185 (11%)

Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PG+ KS + +K+ +       +  G +LR  A I +  E L   IK  +  G+ V 
Sbjct: 5   ILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILR--AAIAERTE-LGEEIKKYIDKGELVP 60

Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN---KYQIHPPMIL-IDCSKL 345
            ++V  +V   + +       G ++DGFPR + Q    +    +  +   M++ +D  + 
Sbjct: 61  DEIVNGLVKERLDEAD--CKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEE 118

Query: 346 VLHK------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399
           +L +       + D++    ++RL+++ E+T P+     +E     +DG  ++ +V  + 
Sbjct: 119 LLLERLLGRRVREDDNEETVKKRLKVYHEQTAPL-----IEYYSVTIDGSGEIEEVLADI 173

Query: 400 ERVLK 404
            + L 
Sbjct: 174 LKALS 178

Length = 178

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 42/210 (20%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G PGS K    +++ + Y     IS G LLR  A I+     L  + K  +  G+ V  +
Sbjct: 6   GPPGSGKGTQAKRIAEKY-GLPHISTGDLLR--AEIKAGTP-LGKKAKEYMEKGELVPDE 61

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQL------------------IDFE----- 328
           +V  +V   + + +  E +G ++DGFPR +SQ                   +  E     
Sbjct: 62  IVNQLVKERLTQNQDNE-NGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120

Query: 329 --------------NKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPML 374
                         +     P +   D     L   + D++    ++RLE+++E+T P++
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180

Query: 375 RAMDVETRLTIVDGDTQLPQVREEFERVLK 404
                   L  +DG+  + +V +     LK
Sbjct: 181 DYYKKRGILVQIDGNGPIDEVWKRILEALK 210

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PG+ K    ++++Q Y     +S G LLR  A ++   E L    K  +  G+ V 
Sbjct: 1   LLGPPGAGKGTQAERIVQKY-GIPHLSTGDLLR--AEVKSGTE-LGKEAKEYMDKGELVP 56

Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFE 328
            +VV+ +V   +++      +G ++DGFPR + Q    E
Sbjct: 57  DEVVIGLVKERLEQN--DCKNGFLLDGFPRTVPQAEALE 93

Length = 186

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 21/185 (11%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G PG+ K      + +   +   IS G +LR    I++    L  + +  +  G+ V   
Sbjct: 8   GPPGAGKGTQAVVLAEHL-HIPHISTGDILR--QAIKEQTP-LGIKAQGYMDKGELVPDQ 63

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IH-----------PPMIL 339
           +VLD+V   +++     A+G ++DGFPR+++Q    +   Q I            P  ++
Sbjct: 64  LVLDLVQERLQQPD--AANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV 121

Query: 340 IDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399
           ++    +L +G+ D++    RRRLE++RE+T P++       +L  +DG+  +  V  E 
Sbjct: 122 VE---RLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTEL 178

Query: 400 ERVLK 404
           +  L 
Sbjct: 179 KAALA 183

Length = 184

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score = 57.9 bits (140), Expect = 9e-10
 Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 19/186 (10%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G P + K    ++++++     Q+S G +LR  A I   G  L  R+K  +  G+ V+ +
Sbjct: 7   GPPAAGKGTQAKRLVEER-GMVQLSTGDMLR--AAIAS-GSELGQRVKGIMDRGELVSDE 62

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQL-------------IDFENKYQIHPPMI 338
           +V+ ++  E +  +   A G + DGFPR ++Q              ID   + ++    +
Sbjct: 63  IVIALI--EERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL 120

Query: 339 LIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREE 398
           +    K    +G+ D++   F  RL+ +  +T P+L     + +LT VDG   +  V   
Sbjct: 121 IERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAAS 180

Query: 399 FERVLK 404
            +  L+
Sbjct: 181 IDAALE 186

Length = 188

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 18/183 (9%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K     + L        +S G LLR        G  L    ++ ++ G+ V+ 
Sbjct: 8   LGPPGAGKGTQAAR-LCAAHGLRHLSTGDLLRSEVAA---GSALGQEAEAVMNRGELVSD 63

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ------LIDFENKYQIHPPMIL-IDCS 343
            +VL IV +++K      + G ++DGFPR ++Q      L++ E K  I   ++L +D +
Sbjct: 64  ALVLAIVESQLKAL---NSGGWLLDGFPRTVAQAEALEPLLE-ELKQPIEAVVLLELDDA 119

Query: 344 KLV---LHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFE 400
            L+   L +G+ D++ +  R RLE++RE+T P++        L  V+    +  + E  E
Sbjct: 120 VLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIE 179

Query: 401 RVL 403
           +VL
Sbjct: 180 KVL 182

Length = 183

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 25/137 (18%)

Query: 38  LSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK---TINGVILIAWRQSL 94
           +  + V ++L   +K     K F++ G+PR +       + +      + VI +     +
Sbjct: 58  VPDEIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEV 117

Query: 95  LERQIDYGAK--------------LGHVILSL--------ARMELANFYQNVTPVTDFFD 132
           L  +I                   +    LS          +  L  + +   P+ D++ 
Sbjct: 118 LIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYK 177

Query: 133 QRGMLIAVNGERNPVEV 149
           ++G L+ ++G  +  EV
Sbjct: 178 KKGKLVEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 25/196 (12%)

Query: 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR-YFANIEDDGEGLNSRIKSS 281
               VV  +G PG+ K    +++ Q+     ++S G +LR + A     G  L  R K  
Sbjct: 4   TKNKVVIFLGPPGAGKGTQAERLAQEL-GLKKLSTGDILRDHVAR----GTELGQRAKPI 58

Query: 282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ------LIDFENKYQIHP 335
           + AGD V  +++L ++  E+      E   ++ DGFPR ++Q      L++      +  
Sbjct: 59  MEAGDLVPDELILALIRDELAGM---EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAV 115

Query: 336 PMILIDCSKLV-------LHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDG 388
            ++ +   +L+         +G+ D++    RRR +++RE+T P++   +    L  VDG
Sbjct: 116 VLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175

Query: 389 DTQLPQVREEFERVLK 404
              L    E + R+LK
Sbjct: 176 ---LGTPDEVYARILK 188

Length = 191

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 38  LSSKTVTEVLMLEM-KMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLL 95
           +   TV ++L   M      +K FLI GYPR ++   E+  +I     V+       +++
Sbjct: 62  VPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMV 121

Query: 96  ERQIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF 153
           +R +      G V       +  L  +Y+   PV  +++ +G L  +N E    +V+   
Sbjct: 122 KRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQV 181

Query: 154 RTAVLKI 160
            TA+ K+
Sbjct: 182 CTAIDKL 188

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K    + + + Y     IS G +LR  A ++   E L    KS + AG+ V  
Sbjct: 6   LGPPGAGKGTQAKFIAEKY-GIPHISTGDMLR--AAVKAGTE-LGKEAKSYMDAGELVPD 61

Query: 291 DVVLDIVYAEMKKTKYTEAD---GIVIDGFPREMSQ 323
           ++V+ +V     K +  + D   G ++DGFPR + Q
Sbjct: 62  EIVIGLV-----KERLAQPDCKNGFLLDGFPRTIPQ 92

Length = 215

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           + G P S K   C+ ++  +     IS G LLR   +   D   +  R K  +++G  V 
Sbjct: 2   ISGAPASGKGTQCELIVHKF-GLVHISTGDLLRAEVSAGTD---IGKRAKEFMNSGRLVP 57

Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPM-ILIDCSKLVLH 348
            ++V+ +V   + +    E  G ++DG+PR  +Q    E K +I P + IL+D    +L 
Sbjct: 58  DEIVIAMVTGRLSREDAKEK-GWLLDGYPRSFAQAQSLE-KLKIRPDIFILLDVPDEIL- 114

Query: 349 KGQIDNSVSAFRRRLE 364
              ID  V    RRL+
Sbjct: 115 ---IDRCVG---RRLD 124

Length = 505

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 25/189 (13%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K     K+L +  +  QIS G +LR       +   +    K  + AGD V  
Sbjct: 7   MGPPGAGKGTQA-KILCERLSIPQISTGDILREAVK---NQTAMGIEAKRYMDAGDLVPD 62

Query: 291 DVVLDIVYAEMKKTKYTEAD---GIVIDGFPREMSQL-------------IDFENKYQIH 334
            VV+ I+     K +  EAD   G ++DGFPR + Q              ID     ++ 
Sbjct: 63  SVVIGII-----KDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP 117

Query: 335 PPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQ 394
              +L         +G+ D++ +  + RL+ + ++TLP+L     + +L+ V+G   L +
Sbjct: 118 DGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEE 177

Query: 395 VREEFERVL 403
           V    ++ L
Sbjct: 178 VTSLIQKEL 186

Length = 186

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 33/132 (25%)

Query: 57  AKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQI------DYGAKLGHVI 109
           A  F++ GYPRN+ +  EY + I  ++ V+ +    + L++R        D GA   HV 
Sbjct: 82  ADGFVLDGYPRNL-EQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANY-HVE 139

Query: 110 LSL------------------------ARMELANFYQNVTPVTDFFDQRGMLIAVNGERN 145
            +                          R  L  F +N  PV + +  +G+L+ V+GE+ 
Sbjct: 140 FNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQT 199

Query: 146 PVEVYADFRTAV 157
           P EV+AD + A+
Sbjct: 200 PDEVWADIQDAI 211

Length = 215

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PGS K  +  K+L +  N+  IS G L R   NI +    L   IK  V  G  V  
Sbjct: 6   LGPPGSGKGTI-AKILSNELNYYHISTGDLFR--ENILNS-TPLGKEIKQIVENGQLVPD 61

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
            + + IV  ++   K    D  ++DGFPR ++Q
Sbjct: 62  SITIKIVEDKINTIK--NNDNFILDGFPRNINQ 92

Length = 211

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
           PL + + G PG  K    + + +   N   I++G +LR     +     +   I+  V++
Sbjct: 6   PLKIVLFGAPGVGKGTFAEILSKKE-NLKHINMGNILREEIKAKTT---IGKEIQKVVTS 61

Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDFEN 329
           G+ V  ++V+ IV  E+ K       G ++DGFPR + Q   L    N
Sbjct: 62  GNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN 109

Length = 229

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 43  VTEVLMLEMKM-SPAAKAFLISGYPRNMRDVVEY----SDKIKTINGVILIAWRQSLLER 97
           VT V +L+  + +  +K FLI G+PRN  ++  +     +K+     +      + +++R
Sbjct: 62  VT-VKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 98  QIDYGAKLGHV---ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
            +  G   G V   I S+ +     + +   PV + ++ +G +  +N E +  EV+ D  
Sbjct: 121 LLKRGQSSGRVDDNIESI-KKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFED-- 177

Query: 155 TAVLKILN 162
             V KI  
Sbjct: 178 --VEKIFA 183

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 25/196 (12%)

Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PG+ K    Q+++Q Y    Q+S G +LR  A       GL +  K  +++G  V 
Sbjct: 5   LLGPPGAGKGTQAQRLVQQY-GIVQLSTGDMLRA-AVAAGTPVGLKA--KDIMASGGLVP 60

Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQL-------------IDFENKYQIHPP 336
            +VV+ I+   +++     A+G ++DGFPR + Q              +D   + +++  
Sbjct: 61  DEVVVGIISDRIEQPD--AANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEG 118

Query: 337 MILIDCSKLVLH---KGQ---IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT 390
            +L      V     +G+    D++     +RL  +R +T P++     + +L  VDG  
Sbjct: 119 ALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMM 178

Query: 391 QLPQVREEFERVLKKI 406
            + +V  E  RVL  +
Sbjct: 179 TIDEVTREIGRVLAAV 194

Length = 333

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           ++ + G PGS KS + +K L +      ISL  LLR     E D   L+          +
Sbjct: 1   IILITGPPGSGKSTLAKK-LAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEE 59

Query: 287 FVNR----DVVLDIVYAEMKKTKYTEADGIVIDGFPRE 320
            ++     + V+D V     + +  EAD +V    P  
Sbjct: 60  ILDELAKQEWVIDGVRESTLELRLEEADLVVFLDLPLP 97

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
KOG3079|consensus	195		100.0
PLN02674	244	adenylate kinase	100.0
PLN02459	261	probable adenylate kinase	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	99.97
PRK14532	188	adenylate kinase; Provisional	99.97
PRK14527	191	adenylate kinase; Provisional	99.97
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.97
PRK02496	184	adk adenylate kinase; Provisional	99.97
PLN02200	234	adenylate kinase family protein	99.97
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.97
PRK14530	215	adenylate kinase; Provisional	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.96
KOG3079|consensus	195		99.96
PLN02842	505	nucleotide kinase	99.96
KOG3078|consensus	235		99.95
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.95
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.95
PLN02674	244	adenylate kinase	99.95
PLN02459	261	probable adenylate kinase	99.95
PRK14528	186	adenylate kinase; Provisional	99.93
PRK13808	333	adenylate kinase; Provisional	99.93
PRK14529	223	adenylate kinase; Provisional	99.92
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.91
PRK14526	211	adenylate kinase; Provisional	99.91
PTZ00088	229	adenylate kinase 1; Provisional	99.9
PRK14531	183	adenylate kinase; Provisional	99.89
PRK14527	191	adenylate kinase; Provisional	99.89
PRK00279	215	adk adenylate kinase; Reviewed	99.88
KOG3078|consensus	235		99.88
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.87
PRK14532	188	adenylate kinase; Provisional	99.86
PRK02496	184	adk adenylate kinase; Provisional	99.86
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.86
PLN02200	234	adenylate kinase family protein	99.85
PRK14530	215	adenylate kinase; Provisional	99.83
PLN02842	505	nucleotide kinase	99.82
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.8
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.77
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.74
PRK13974	212	thymidylate kinase; Provisional	99.7
PRK01184	184	hypothetical protein; Provisional	99.6
PRK08356	195	hypothetical protein; Provisional	99.59
PRK13973	213	thymidylate kinase; Provisional	99.51
PRK03839	180	putative kinase; Provisional	99.51
PLN02924	220	thymidylate kinase	99.47
PRK13975	196	thymidylate kinase; Provisional	99.42
PRK08233	182	hypothetical protein; Provisional	99.4
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.39
PRK06217	183	hypothetical protein; Validated	99.38
PHA02530	300	pseT polynucleotide kinase; Provisional	99.38
PRK08118	167	topology modulation protein; Reviewed	99.31
PRK13949	169	shikimate kinase; Provisional	99.3
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.29
PRK13976	209	thymidylate kinase; Provisional	99.28
KOG3327|consensus	208		99.25
PRK00698	205	tmk thymidylate kinase; Validated	99.24
PRK13974	212	thymidylate kinase; Provisional	99.22
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.18
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.13
PRK07933	213	thymidylate kinase; Validated	99.09
PRK03731	171	aroL shikimate kinase II; Reviewed	99.09
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.09
PRK04040	188	adenylate kinase; Provisional	99.06
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.03
PRK04182	180	cytidylate kinase; Provisional	99.03
PRK13947	171	shikimate kinase; Provisional	99.01
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.98
PRK00131	175	aroK shikimate kinase; Reviewed	98.93
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.93
PRK13948	182	shikimate kinase; Provisional	98.92
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.9
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.9
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.89
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.89
PRK06762	166	hypothetical protein; Provisional	98.87
PRK14738	206	gmk guanylate kinase; Provisional	98.87
PRK00625	173	shikimate kinase; Provisional	98.86
PRK07261	171	topology modulation protein; Provisional	98.86
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.85
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.85
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.84
PRK13946	184	shikimate kinase; Provisional	98.82
PRK05057	172	aroK shikimate kinase I; Reviewed	98.81
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.8
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.79
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.76
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.75
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.73
PLN02199	303	shikimate kinase	98.72
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.72
PRK00023	225	cmk cytidylate kinase; Provisional	98.71
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.71
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.71
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.71
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.7
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.7
PRK09825	176	idnK D-gluconate kinase; Provisional	98.69
PRK00300	205	gmk guanylate kinase; Provisional	98.68
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.67
PLN02422	232	dephospho-CoA kinase	98.66
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.66
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.63
KOG3347|consensus	176		98.63
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.62
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.61
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.59
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.57
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.54
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.52
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.5
PRK05541	176	adenylylsulfate kinase; Provisional	98.48
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.48
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.48
PRK13973	213	thymidylate kinase; Provisional	98.47
PRK14737	186	gmk guanylate kinase; Provisional	98.47
PTZ00451	244	dephospho-CoA kinase; Provisional	98.43
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.4
PRK05480	209	uridine/cytidine kinase; Provisional	98.39
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.37
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.33
PRK03846	198	adenylylsulfate kinase; Provisional	98.3
PRK00889	175	adenylylsulfate kinase; Provisional	98.29
PRK11545	163	gntK gluconate kinase 1; Provisional	98.28
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.28
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.28
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.27
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.26
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.21
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.21
PRK06547	172	hypothetical protein; Provisional	98.2
PRK01184	184	hypothetical protein; Provisional	98.18
PRK08356	195	hypothetical protein; Provisional	98.17
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.13
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.12
PRK12338	319	hypothetical protein; Provisional	98.11
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.11
PRK03839	180	putative kinase; Provisional	98.1
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.04
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.03
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.03
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.02
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.96
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.94
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.93
KOG3220|consensus	225		97.88
PHA03132	580	thymidine kinase; Provisional	97.87
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.83
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.83
PRK06696	223	uridine kinase; Validated	97.79
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.78
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.78
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.78
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.78
KOG3354|consensus	191		97.77
KOG3877|consensus	393		97.75
COG4639	168	Predicted kinase [General function prediction only	97.74
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.73
COG0645	170	Predicted kinase [General function prediction only	97.72
KOG3327|consensus	208		97.67
PRK07667	193	uridine kinase; Provisional	97.67
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.66
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.63
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.62
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.61
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.61
PTZ00301	210	uridine kinase; Provisional	97.57
PRK08233	182	hypothetical protein; Provisional	97.55
PHA02530	300	pseT polynucleotide kinase; Provisional	97.54
PLN02772	398	guanylate kinase	97.54
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.51
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.51
PRK13975	196	thymidylate kinase; Provisional	97.49
PRK07429	327	phosphoribulokinase; Provisional	97.48
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.41
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.39
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.35
PRK06217	183	hypothetical protein; Validated	97.3
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.29
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.29
PRK00698	205	tmk thymidylate kinase; Validated	97.28
PLN02348	395	phosphoribulokinase	97.23
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.18
PF00004	132	AAA: ATPase family associated with various cellula	97.18
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.14
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.12
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.03
PF05729	166	NACHT: NACHT domain	96.89
PLN02165	334	adenylate isopentenyltransferase	96.79
smart00382	148	AAA ATPases associated with a variety of cellular	96.78
PLN02924	220	thymidylate kinase	96.78
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.77
PLN02748	468	tRNA dimethylallyltransferase	96.75
PHA00729	226	NTP-binding motif containing protein	96.73
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.72
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.71
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.69
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	96.63
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.6
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.59
PRK15453	290	phosphoribulokinase; Provisional	96.56
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.51
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.51
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	96.51
KOG3308|consensus	225		96.47
PRK05439	311	pantothenate kinase; Provisional	96.46
PLN02840	421	tRNA dimethylallyltransferase	96.42
KOG0738|consensus	491		96.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	96.38
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.35
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	96.33
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.29
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.27
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.27
PRK06761	282	hypothetical protein; Provisional	96.24
KOG0744|consensus	423		96.24
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.23
PRK08118	167	topology modulation protein; Reviewed	96.17
KOG0739|consensus	439		96.03
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.01
CHL00181	287	cbbX CbbX; Provisional	95.99
KOG0736|consensus	953		95.99
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.95
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	95.93
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.93
PLN02318	656	phosphoribulokinase/uridine kinase	95.9
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	95.89
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.86
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.82
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.77
PRK07933	213	thymidylate kinase; Validated	95.74
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.72
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.71
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.7
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.67
PF13245	76	AAA_19: Part of AAA domain	95.6
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	95.53
PRK00771	437	signal recognition particle protein Srp54; Provisi	95.53
PRK03992	389	proteasome-activating nucleotidase; Provisional	95.52
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.52
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.49
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.48
PF13173	128	AAA_14: AAA domain	95.47
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.44
KOG0733|consensus	802		95.44
CHL00195	489	ycf46 Ycf46; Provisional	95.43
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.41
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.41
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.4
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	95.38
PLN02796	347	D-glycerate 3-kinase	95.37
COG1660	286	Predicted P-loop-containing kinase [General functi	95.36
PRK09087	226	hypothetical protein; Validated	95.36
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.33
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	95.29
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.26
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.26
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	95.24
KOG0733|consensus	802		95.23
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.2
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	95.15
KOG0651|consensus	388		95.15
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.11
KOG0730|consensus	693		95.07
PRK09183	259	transposase/IS protein; Provisional	95.06
PRK10867	433	signal recognition particle protein; Provisional	95.03
PRK06620	214	hypothetical protein; Validated	94.96
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	94.95
PRK12377	248	putative replication protein; Provisional	94.92
PRK06526	254	transposase; Provisional	94.9
PRK14738	206	gmk guanylate kinase; Provisional	94.86
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.85
KOG0734|consensus	752		94.85
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	94.83
PRK04195	482	replication factor C large subunit; Provisional	94.82
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.82
PRK13949	169	shikimate kinase; Provisional	94.81
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.8
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	94.79
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.78
PRK03731	171	aroL shikimate kinase II; Reviewed	94.78
KOG0737|consensus	386		94.78
KOG0635|consensus	207		94.77
PLN03046	460	D-glycerate 3-kinase; Provisional	94.74
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	94.73
COG3709	192	Uncharacterized component of phosphonate metabolis	94.71
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.71
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	94.7
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	94.69
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.69
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	94.67
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	94.66
TIGR00959	428	ffh signal recognition particle protein. This mode	94.65
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	94.65
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	94.63
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	94.63
KOG0731|consensus	774		94.62
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.61
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.6
KOG3062|consensus	281		94.6
PRK08181	269	transposase; Validated	94.57
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.57
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	94.57
PRK10416	318	signal recognition particle-docking protein FtsY;	94.56
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.56
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	94.54
PHA02244	383	ATPase-like protein	94.52
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.51
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	94.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.48
TIGR00064	272	ftsY signal recognition particle-docking protein F	94.47
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	94.47
PF02283	167	CobU: Cobinamide kinase / cobinamide phosphate gua	94.47
COG2256	436	MGS1 ATPase related to the helicase subunit of the	94.4
COG2087	175	CobU Adenosyl cobinamide kinase/adenosyl cobinamid	94.39
KOG1533|consensus	290		94.38
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.35
PRK14731	208	coaE dephospho-CoA kinase; Provisional	94.34
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.33
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	94.33
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	94.31
COG3911	183	Predicted ATPase [General function prediction only	94.29
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	94.27
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.16
PRK14974	336	cell division protein FtsY; Provisional	94.16
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	94.15
PRK09435	332	membrane ATPase/protein kinase; Provisional	94.12
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	94.09
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	94.05
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	94.02
PRK13342	413	recombination factor protein RarA; Reviewed	94.02
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.01
PRK04040	188	adenylate kinase; Provisional	94.0
PRK08533	230	flagellar accessory protein FlaH; Reviewed	93.99
PRK13976	209	thymidylate kinase; Provisional	93.96
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	93.95
PRK04328	249	hypothetical protein; Provisional	93.94
COG1127	263	Ttg2A ABC-type transport system involved in resist	93.89
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.87
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	93.85
PRK06921	266	hypothetical protein; Provisional	93.8
COG1855	604	ATPase (PilT family) [General function prediction	93.8
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	93.79
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.79
PRK15455	644	PrkA family serine protein kinase; Provisional	93.78
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	93.77
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	93.77
KOG1969|consensus	877		93.76
CHL00176	638	ftsH cell division protein; Validated	93.72
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	93.72
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.71
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.66
PRK08903	227	DnaA regulatory inactivator Hda; Validated	93.66
PRK06893	229	DNA replication initiation factor; Validated	93.65
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	93.64
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	93.64
PRK08116	268	hypothetical protein; Validated	93.63
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	93.59
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	93.58
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	93.58
PRK12402	337	replication factor C small subunit 2; Reviewed	93.56
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	93.53
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	93.49
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	93.46
PF13479	213	AAA_24: AAA domain	93.45
PF07726	131	AAA_3: ATPase family associated with various cellu	93.45
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	93.45
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	93.43
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	93.4
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	93.38
PRK06067	234	flagellar accessory protein FlaH; Validated	93.34
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	93.32
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	93.31
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	93.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	93.3
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	93.29
PRK00411	394	cdc6 cell division control protein 6; Reviewed	93.28
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	93.27
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	93.27
TIGR02237	209	recomb_radB DNA repair and recombination protein R	93.26
PTZ00202	550	tuzin; Provisional	93.26
PRK13695	174	putative NTPase; Provisional	93.23
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	93.22
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	93.21
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	93.16
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	93.15
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	93.15
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	93.13
KOG1532|consensus	366		93.13
PRK08084	235	DNA replication initiation factor; Provisional	93.11
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.1
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	93.09
cd03116	159	MobB Molybdenum is an essential trace element in t	93.08
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	93.07
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.07
PLN03025	319	replication factor C subunit; Provisional	93.06
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	93.06
cd01394	218	radB RadB. The archaeal protein radB shares simila	93.06
PRK13768	253	GTPase; Provisional	93.02
COG4240	300	Predicted kinase [General function prediction only	93.02
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	93.02
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.01
KOG0735|consensus	952		92.98
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	92.97
PHA02544	316	44 clamp loader, small subunit; Provisional	92.95
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	92.92
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	92.92
PRK08939	306	primosomal protein DnaI; Reviewed	92.89
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	92.88
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	92.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	92.87
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.86
KOG1534|consensus	273		92.83
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	92.83
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	92.82
CHL00206	2281	ycf2 Ycf2; Provisional	92.81
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	92.8
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	92.79
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	92.78
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	92.78
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	92.76
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	92.74
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	92.73
cd03112	158	CobW_like The function of this protein family is u	92.72
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	92.72
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	92.69
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	92.68
PF13555	62	AAA_29: P-loop containing region of AAA domain	92.68
COG1484	254	DnaC DNA replication protein [DNA replication, rec	92.67
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.66
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	92.64
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	92.63
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	92.63
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.62
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	92.59
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.59
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.58
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.57
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	92.57
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	92.56
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	92.53
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.53
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	92.51
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	92.5
KOG2004|consensus	906		92.48
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	92.47
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	92.45
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	92.45
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	92.44
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	92.44
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	92.4
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	92.4
COG4619	223	ABC-type uncharacterized transport system, ATPase	92.39
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	92.38
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	92.38
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	92.36
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	92.35
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	92.35
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	92.33
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	92.33
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	92.33
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	92.32
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	92.31
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	92.3
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	92.29
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	92.29
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	92.28
PRK04296	190	thymidine kinase; Provisional	92.27
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	92.27
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.27
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	92.26
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	92.25
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	92.24
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	92.23
COG1100	219	GTPase SAR1 and related small G proteins [General	92.22
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.2
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	92.19
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	92.17
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	92.17
cd03114	148	ArgK-like The function of this protein family is u	92.17
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	92.16
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	92.16
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	92.16
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	92.14
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	92.14
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	92.14
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	92.14
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	92.14
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	92.13
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	92.13
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	92.12
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	92.12
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	92.12
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	92.12

>KOG3079|consensus

Probab=100.00  E-value=9.7e-40  Score=302.89  Aligned_cols=179  Identities=28%  Similarity=0.595  Sum_probs=165.8

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccccc-CCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD-GEGLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~-~t~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      ....+++|||+|+|||||+|||.+|+++| ||.|+|+|||||   ++.+. +++.|.+|++++.+|.+||.+++..||++
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky-~ftHlSaGdLLR---~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~   79 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKY-GFTHLSAGDLLR---AEIASAGSERGALIKEIIKNGDLVPVEITLSLLEE   79 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHc-CceeecHHHHHH---HHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHH
Confidence            45679999999999999999999999999 999999999999   77776 99999999999999999999999999999


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhh-------hc--cCCCCCHHHHHHHHHHHHHH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVL-------HK--GQIDNSVSAFRRRLELFRER  369 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~-------~r--~R~dD~~e~~~~Rl~~f~~~  369 (520)
                      +|.  .....+||+||||||+.+|+..|++.+. .+..|+|+||+.+..       ++  +|.||+.+++++|++.|++.
T Consensus        80 am~--~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~  157 (195)
T KOG3079|consen   80 AMR--SSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKS  157 (195)
T ss_pred             HHH--hcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHc
Confidence            999  5566678999999999999999999998 577899999999752       22  38999999999999999999


Q ss_pred             hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +.|+++||+.+++++.|||+.++++||.++...|..
T Consensus       158 t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  158 TLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             chHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999988764

>PLN02674 adenylate kinase

Probab=100.00  E-value=7.2e-36  Score=295.07  Aligned_cols=175  Identities=21%  Similarity=0.396  Sum_probs=160.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..+++|+|+|||||||||||++|+++| |+.|||+|+++|   ++++.++++|..+++++.+|++||++++..++.++|.
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~-~~~his~GdllR---~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~  104 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR---AAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK  104 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHc-CCcEEchhHHHH---HHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence            346789999999999999999999998 999999999999   8888999999999999999999999999999999999


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc------------------------
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK------------------------  349 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r------------------------  349 (520)
                        ..++.+||||||||||..||+.|++.+    ..++.||+|+|+++.+     +|                        
T Consensus       105 --~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~  182 (244)
T PLN02674        105 --KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDD  182 (244)
T ss_pred             --CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCccc
Confidence              667889999999999999999998764    3567799999998642     11                        


Q ss_pred             -------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        350 -------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       350 -------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                             +|.||+++.+++|++.|++++.|+++||.+++.++.|||++++++|+++|+..|
T Consensus       183 ~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        183 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             ccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                   378999999999999999999999999999999999999999999999998765

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=2.4e-34  Score=285.67  Aligned_cols=183  Identities=17%  Similarity=0.294  Sum_probs=162.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      .++.+|+|+|+|||||||||++|+++| |+.|||+|+++|   ++++.++++|..++.++.+|.+||++++..+|.++|.
T Consensus        27 ~~~~~ii~~G~PGsGK~T~a~~la~~~-~~~~is~gdllR---~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~  102 (261)
T PLN02459         27 GRNVNWVFLGCPGVGKGTYASRLSKLL-GVPHIATGDLVR---EEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLE  102 (261)
T ss_pred             cCccEEEEECCCCCCHHHHHHHHHHHh-CCcEEeCcHHHH---HHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence            355679999999999999999999998 999999999999   8888899999999999999999999999999999998


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc----------------------------
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK----------------------------  349 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r----------------------------  349 (520)
                      +....+.+||||||||||..||+.|+... .++.||+|+|+++.+     +|                            
T Consensus       103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~-~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~  181 (261)
T PLN02459        103 AGEEEGESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVM  181 (261)
T ss_pred             cccccCCceEEEeCCCCCHHHHHHHHhcC-CCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccC
Confidence            21123579999999999999999999764 467899999998642     11                            


Q ss_pred             --------------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        350 --------------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       350 --------------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                                    +|.||+++.+++|++.|++++.|+++||..++.++.|||++++++|+++|...|...-+++
T Consensus       182 ~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~~  256 (261)
T PLN02459        182 PPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDEDK  256 (261)
T ss_pred             CCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhhh
Confidence                          5889999999999999999999999999999999999999999999999999886654443

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=3.8e-33  Score=272.64  Aligned_cols=170  Identities=22%  Similarity=0.371  Sum_probs=152.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||||++|+++| ++.|+|+|+++|   ++...++++|+.+++++.+|.++|++++.+++.++|.  ..
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~-~~~~is~gdllr---~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~--~~   75 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKY-DLAHIESGAIFR---EHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLK--QD   75 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCCCcccchhhh---hhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHh--cc
Confidence            59999999999999999999998 999999999999   7788899999999999999999999999999999999  55


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----------------------------
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----------------------------  349 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----------------------------  349 (520)
                      + .+||||||||||.+||+.|++.+    ..++.||+|+|+++.+     +|                            
T Consensus        76 ~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~  154 (223)
T PRK14529         76 G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVC  154 (223)
T ss_pred             C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCc
Confidence            5 89999999999999999998653    3467799999998642     11                            


Q ss_pred             -----cCCCCC-HHHHHHHHHHHHHH---hHHHHHHhhh-----CCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        350 -----GQIDNS-VSAFRRRLELFRER---TLPMLRAMDV-----ETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       350 -----~R~dD~-~e~~~~Rl~~f~~~---~~~l~~~y~~-----~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                           +|.||+ +|.+++|++.|+++   ..++++||.+     ++.++.|||++++++|+++|...|
T Consensus       155 ~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        155 GGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                 488896 78999999999998   5588999986     688999999999999999998765

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=5.7e-33  Score=284.60  Aligned_cols=176  Identities=24%  Similarity=0.451  Sum_probs=161.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|||||||||||++|+++| |+.|||+|+|||   +++..+++.|..+.++|.+|.++|++++..+|.++|.  +.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~y-gl~~is~gdlLR---~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~--~~   75 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQY-GIVQLSTGDMLR---AAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIE--QP   75 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCceecccHHHH---HHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHh--cc
Confidence            69999999999999999999998 999999999999   8888899999999999999999999999999999999  67


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hc----------cCCCCCHHHHHHHHHHHH
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HK----------GQIDNSVSAFRRRLELFR  367 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r----------~R~dD~~e~~~~Rl~~f~  367 (520)
                      ++.+|||||||||+.+|++.|+..+.    .|+.||+|+|+++.+     .|          .|.||+++.|++|+..|+
T Consensus        76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~  155 (333)
T PRK13808         76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYR  155 (333)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHH
Confidence            77899999999999999999987643    578899999999753     12          367899999999999999


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      +++.|+++||.+.+.++.|||++++++|+++|+..|...+.
T Consensus       156 ~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        156 AQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             HHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence            99999999999888899999999999999999999987553

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=1.8e-32  Score=266.25  Aligned_cols=171  Identities=25%  Similarity=0.461  Sum_probs=157.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|++|+++| |+.|||+|+++|   ++...+++.|..+++++.+|.++|++++.+++.++|.  ..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~-g~~~is~gdllr---~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~--~~   74 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKY-GLPHISTGDLLR---AEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLT--QN   74 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-CCCeeehhHHHH---HhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC
Confidence            48999999999999999999998 999999999999   7778889999999999999999999999999999998  43


Q ss_pred             -CCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhh-----hc------------------------------
Q psy11031        307 -TEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVL-----HK------------------------------  349 (520)
Q Consensus       307 -~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~-----~r------------------------------  349 (520)
                       ...+|||||||||+..||+.|++.+. .++.||+|+||++.+     +|                              
T Consensus        75 ~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l  154 (210)
T TIGR01351        75 QDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELL  154 (210)
T ss_pred             cccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcc
Confidence             34789999999999999999999887 688899999999752     12                              


Q ss_pred             -cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        350 -GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       350 -~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                       +|.||+++.+++|++.|++++.++++||...+.++.|||++++++|++.|.+.|
T Consensus       155 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       155 IQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence             378899999999999999999999999999899999999999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=2.2e-32  Score=261.12  Aligned_cols=171  Identities=23%  Similarity=0.422  Sum_probs=157.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      ++|+|+|+|||||||+|+.|+++| |+.|+|+|+++|   .+...++++|..++.++.+|+++|++++..++.+++.  .
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~-~~~~is~~~~lr---~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~--~   75 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL-SIPQISTGDILR---EAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIR--E   75 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-CCCeeeCCHHHH---HHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHh--C
Confidence            469999999999999999999998 999999999999   7778889999999999999999999999999999999  6


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHhHH
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~~~  372 (520)
                      ..+.+|||||||||+.+||+.|++.+    ..++.||+|+||++.+     +|    +|.||+++.+++|++.|++++.|
T Consensus        76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p  155 (186)
T PRK14528         76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP  155 (186)
T ss_pred             cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence            67788999999999999999998765    3577899999999753     22    68899999999999999999999


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERV  402 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~  402 (520)
                      +++||+.++.+++|||++++++|+..|...
T Consensus       156 v~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        156 LLDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            999999999999999999999999998764

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=2.6e-32  Score=259.68  Aligned_cols=172  Identities=26%  Similarity=0.486  Sum_probs=155.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ..+|+|+|+|||||||+|++|+++| |+.|||+|+++|   ++...++++|..++.++..|..+|++++..++.+++.  
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~-g~~~is~gd~lr---~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~--   75 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAH-GLRHLSTGDLLR---SEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLK--   75 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-CCCeEecccHHH---HHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Confidence            3579999999999999999999998 999999999999   7778889999999999999999999999999999998  


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                      .. ...|||||||||+..|++.|++.+.    .++.||+|+||++.+     +|+|.||+++.+++|++.|++.+.|+++
T Consensus        76 ~~-~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~  154 (183)
T PRK14531         76 AL-NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLID  154 (183)
T ss_pred             hc-cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            32 4679999999999999999887543    345699999999753     4678899999999999999999999999


Q ss_pred             HhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ||..++.++.|||++++++|+++|.+.|
T Consensus       155 ~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        155 HYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            9999899999999999999999998765

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=3.1e-32  Score=264.88  Aligned_cols=172  Identities=22%  Similarity=0.408  Sum_probs=156.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|+++| ++.|+|+|+++|   ++...+++.|..+++++.+|.++|++++.+++.++|.  ..
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~-~~~~is~G~llr---~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~--~~   75 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNEL-NYYHISTGDLFR---ENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKIN--TI   75 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCceeecChHHH---HhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHh--cc
Confidence            58999999999999999999998 999999999999   7888889999999999999999999999999999999  56


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc-------------------------------c
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK-------------------------------G  350 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r-------------------------------~  350 (520)
                      .+.+|||||||||+.+||+.|++.+.. ..+|+|+|+++.+     +|                               +
T Consensus        76 ~~~~g~ilDGfPR~~~Qa~~l~~~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~  154 (211)
T PRK14526         76 KNNDNFILDGFPRNINQAKALDKFLPN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQ  154 (211)
T ss_pred             cccCcEEEECCCCCHHHHHHHHHhcCC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeec
Confidence            678999999999999999999986542 4578899988642     11                               5


Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        351 QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       351 R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      |.||+++.+++|++.|++++.|+++||...+.++.|||++++++|+++|.+.|..
T Consensus       155 R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        155 RKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             cCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            8899999999999999999999999999989999999999999999999988764

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=8.6e-32  Score=264.74  Aligned_cols=173  Identities=21%  Similarity=0.356  Sum_probs=155.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..|.+|+|+|+|||||||+|++|+++| |+.|||+|+++|   ++.+.++++|..+++++.+|.++|++++.+++.+++.
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~-g~~~is~gdllr---~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~   79 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKE-NLKHINMGNILR---EEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIA   79 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh-CCcEEECChHHH---HHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            456779999999999999999999998 999999999999   7777888999999999999999999999999999998


Q ss_pred             ccc--cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----h---------------------------
Q psy11031        303 KTK--YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----H---------------------------  348 (520)
Q Consensus       303 ~~~--~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~---------------------------  348 (520)
                        .  ..+.+||||||||||..||+.|++. ..++.||+|+++++.+     +                           
T Consensus        80 --~~~~~~~~g~iLDGfPRt~~Qa~~l~~~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~  156 (229)
T PTZ00088         80 --KVTDDCFKGFILDGFPRNLKQCKELGKI-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPIL  156 (229)
T ss_pred             --hhccccCceEEEecCCCCHHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCC
Confidence              4  4557899999999999999999875 4677899999987431     0                           


Q ss_pred             --------------ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC-EEEE---ECCCCHHHHHHHHHHH
Q psy11031        349 --------------KGQIDNSVSAFRRRLELFRERTLPMLRAMDVETR-LTIV---DGDTQLPQVREEFERV  402 (520)
Q Consensus       349 --------------r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~-l~~I---Da~~~~e~V~~~I~~~  402 (520)
                                    .+|.||+++.+++|++.|++++.++++||.++++ ++.|   ||++++++|++.|.+.
T Consensus       157 ~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        157 PPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             CCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence                          1588999999999999999999999999999999 9888   7999999999998764

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.97  E-value=4e-31  Score=257.61  Aligned_cols=173  Identities=25%  Similarity=0.459  Sum_probs=156.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|+++| |+.|+|+|+++|   ++...+++.|..+++++.+|..+|++++.+++.++|.  ..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~-~~~~is~~dl~r---~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~--~~   75 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY-GIPHISTGDMLR---AAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLA--QP   75 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCcEEECCccHH---HHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHh--cc
Confidence            69999999999999999999998 999999999999   7777889999999999999999999999999999999  66


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----------------------------
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----------------------------  349 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----------------------------  349 (520)
                      .+.+||||||||++.+||+.|++.+    ..++.||+|+|+++.+     +|                            
T Consensus        76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~  155 (215)
T PRK00279         76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGE  155 (215)
T ss_pred             CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCC
Confidence            6777999999999999999997553    2456799999998642     11                            


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        350 ---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       350 ---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                         +|.||+++.+++|+..|++++.++++||+..+.++.|||++++++||++|.+.|..
T Consensus       156 ~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        156 ELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             cccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence               46889999999999999999999999999989999999999999999999988753

>PRK14532 adenylate kinase; Provisional

Probab=99.97  E-value=1.6e-30  Score=247.70  Aligned_cols=172  Identities=24%  Similarity=0.451  Sum_probs=155.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      .|+|+|+|||||||+|++|+++| |+.|||+|+++|   ++.+.+++.|..+++++..|+.+|++++.+++..++.  ..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~-g~~~is~~d~lr---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~   75 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER-GMVQLSTGDMLR---AAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLP--EA   75 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-CCeEEeCcHHHH---HHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHh--Cc
Confidence            58999999999999999999998 999999999999   7777889999999999999999999999999999998  66


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      .++.|||||||||+.+|++.|++.+    ..++.+|+|+|+++.+     +|    +|.+++.+.+.+|+..|+++..++
T Consensus        76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i  155 (188)
T PRK14532         76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL  155 (188)
T ss_pred             CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999987554    3456799999999753     12    477889999999999999999999


Q ss_pred             HHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      +++|++.+.++.|||++++++|+++|.+.|.
T Consensus       156 ~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        156 LPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            9999988889999999999999999998874

>PRK14527 adenylate kinase; Provisional

Probab=99.97  E-value=2.5e-30  Score=247.49  Aligned_cols=174  Identities=25%  Similarity=0.456  Sum_probs=155.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..+++|+|+|+|||||||+|+.|+++| |+.|+|+|++++   ++...+++++..++.++.+|..+|++++..++.+++.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~-~~~~is~gd~~r---~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~   79 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQEL-GLKKLSTGDILR---DHVARGTELGQRAKPIMEAGDLVPDELILALIRDELA   79 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh-CCCCCCccHHHH---HHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence            467899999999999999999999998 999999999999   6777788999999999999999999999999999998


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----h----ccCCCCCHHHHHHHHHHHHHH
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----H----KGQIDNSVSAFRRRLELFRER  369 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~----r~R~dD~~e~~~~Rl~~f~~~  369 (520)
                        ...+ .+|||||||++..|++.|+..+    ..+..||+|+|+++.+     +    ++|.||+++.+++|++.|+++
T Consensus        80 --~~~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~  156 (191)
T PRK14527         80 --GMEP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQ  156 (191)
T ss_pred             --cCCC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHH
Confidence              4444 5899999999999999887643    2345589999999763     2    257899999999999999999


Q ss_pred             hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      +.++++||+.++.+++|||++++++|+++|...|
T Consensus       157 ~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        157 TQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             hHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999998765

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.97  E-value=2.8e-31  Score=244.50  Aligned_cols=146  Identities=25%  Similarity=0.492  Sum_probs=129.2

Q ss_pred             EEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccccCCC
Q psy11031        230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEA  309 (520)
Q Consensus       230 vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~~~~  309 (520)
                      |+|||||||||+|++|+++| |+.|||+++++|   ++.+.++++|..+++++.+|+.+|++++.+++..+|.  +..+.
T Consensus         1 i~G~PgsGK~t~~~~la~~~-~~~~is~~~llr---~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~--~~~~~   74 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY-GLVHISVGDLLR---EEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLE--QPPCN   74 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH-TSEEEEHHHHHH---HHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHH--SGGTT
T ss_pred             CcCCCCCChHHHHHHHHHhc-CcceechHHHHH---HHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHh--hhccc
Confidence            68999999999999999998 999999999999   7778899999999999999999999999999999999  55678


Q ss_pred             cEEEEeCCCCCHHHHHHHHh----hcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCC
Q psy11031        310 DGIVIDGFPREMSQLIDFEN----KYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET  381 (520)
Q Consensus       310 ~G~ILDGFPrt~~Qae~l~~----~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~  381 (520)
                      +||||||||||.+||+.|++    ....++.||+|+|+++.+.++-..|+.+.+++|++.|++++.++++||+++|
T Consensus        75 ~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~d~~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen   75 RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQDNEEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999998    5566778999999998765443448899999999999999999999999876

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK02496 adk adenylate kinase; Provisional

Probab=99.97  E-value=3.7e-30  Score=244.48  Aligned_cols=172  Identities=26%  Similarity=0.474  Sum_probs=156.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|+|+|||||||+|+.|+++| |+.|+++|++++   ++...+++.|..++.++.+|..+|++++.+++.+++.  +
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~-~~~~i~~~~~~~---~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~--~   75 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHL-HIPHISTGDILR---QAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQ--Q   75 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-CCcEEEhHHHHH---HHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHh--C
Confidence            579999999999999999999998 999999999999   7777888999999999999999999999999999998  6


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLPMLRA  376 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~  376 (520)
                      .++..|||||||||+..|++.|++.+    ..++.+|+|+|+.+.+     .|+|.+|+++.+++|++.|++++.++++|
T Consensus        76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~  155 (184)
T PRK02496         76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDY  155 (184)
T ss_pred             cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66788999999999999999888653    3567799999999763     35677889999999999999999999999


Q ss_pred             hhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        377 MDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       377 y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      |+.++.++.|||++++++|+++|.+.|
T Consensus       156 ~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        156 YRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            988888999999999999999998876

>PLN02200 adenylate kinase family protein

Probab=99.97  E-value=7.2e-30  Score=252.17  Aligned_cols=179  Identities=23%  Similarity=0.543  Sum_probs=159.9

Q ss_pred             cCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      +....|.+|+|+|+|||||||+|++|+++| |+.|||+|+++|   ++....++.|..+.+++..|+.+|++++.+++..
T Consensus        38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~-g~~his~gdllR---~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~  113 (234)
T PLN02200         38 SKEKTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDLLR---REIASNSEHGAMILNTIKEGKIVPSEVTVKLIQK  113 (234)
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHh-CCeEEEccHHHH---HHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            345667899999999999999999999998 999999999999   7777788899999999999999999999999999


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhh-----hc--cCCCCCHHHHHHHHHHHHHHhH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVL-----HK--GQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~-----~r--~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      ++.  .. ..+||||||||++..|++.|++.++ .++.||+|+|+++.+     .|  .|.+|+.+.+++|++.|++.+.
T Consensus       114 ~l~--~~-~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~  190 (234)
T PLN02200        114 EME--SS-DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNL  190 (234)
T ss_pred             HHh--cC-CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            998  43 3578999999999999999988765 466799999999753     22  4688899999999999999999


Q ss_pred             HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ++++||+..+.++.|||++++++|++.|.+.|..
T Consensus       191 pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~  224 (234)
T PLN02200        191 PVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAA  224 (234)
T ss_pred             HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999999888899999999999999999988765

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.97  E-value=1.4e-29  Score=239.60  Aligned_cols=170  Identities=26%  Similarity=0.582  Sum_probs=151.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|+++| |+.|||+++++|   ++...+++.|+.+++++.+|..+|++++.+++.+++.  ..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~-~~~~is~~d~lr---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~~   74 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF-GFTHLSAGDLLR---AEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQ--AD   74 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-CCeEEECChHHH---HHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHh--cc
Confidence            48999999999999999999998 999999999999   6666778899999999999999999999999999998  44


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      . .+||||||||++..|++.|.+.+.   .++.+|+|+|+.+...     |    +|.+++.+.+++|++.|++...+++
T Consensus        75 ~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~  153 (183)
T TIGR01359        75 G-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVI  153 (183)
T ss_pred             C-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4 789999999999999999886543   5677999999997531     2    3567789999999999999999999


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ++|+..+.++.|||++++++|+++|.+.|
T Consensus       154 ~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       154 EHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            99998888999999999999999998765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14530 adenylate kinase; Provisional

Probab=99.96  E-value=1.5e-28  Score=239.56  Aligned_cols=169  Identities=24%  Similarity=0.424  Sum_probs=147.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-----ccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-----DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-----~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      ++|+|+|+|||||||+|++|+++| |+.|+++|++++   ++.     ..++..|. ++.++..|..+|++++..++..+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~-~~~~i~~g~~lr---~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~   78 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDALR---ANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEA   78 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh-CCeEEeccHHHH---HhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHH
Confidence            479999999999999999999998 999999999999   554     33445554 67889999999999999999988


Q ss_pred             HhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c--------------------------
Q psy11031        301 MKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K--------------------------  349 (520)
Q Consensus       301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r--------------------------  349 (520)
                      +.     ...||||||||++.+|++.|++.. .++.||+|+|+.+.+.     |                          
T Consensus        79 l~-----~~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~  152 (215)
T PRK14530         79 LS-----DADGFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDEC  152 (215)
T ss_pred             Hh-----cCCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCccc
Confidence            77     246999999999999999998653 4678999999986421     1                          


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        350 -----GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       350 -----~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                           +|.+|+++.+++|+..|++++.++++||.+++.++.|||++++++|++.|.+.|..
T Consensus       153 ~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        153 GGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence                 47789999999999999999999999999888999999999999999999988865

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=233.51  Aligned_cols=167  Identities=22%  Similarity=0.460  Sum_probs=150.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|+|+|||||||||++|++++ +++|||+|+++|   +.....+++|..++.+++.|++||++++..++..++.  .
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~-~i~hlstgd~~r---~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~--~   74 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKL-GLPHLDTGDILR---AAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLD--E   74 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-CCcEEcHhHHhH---hhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHH--h
Confidence            369999999999999999999997 999999999999   7777889999999999999999999999999999999  5


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hcc-CCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKG-QIDNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~-R~dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                      .+|..|||+|||||++.||+.|++.+.    ..+.++.++++++..     ++. |.||+++.+++|+..|++.+.|++.
T Consensus        75 ~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~  154 (178)
T COG0563          75 ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIE  154 (178)
T ss_pred             hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhh
Confidence            677669999999999999999997633    345689999988542     233 7899999999999999999999999


Q ss_pred             HhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ||.     +.|||.+++++|++.+...+
T Consensus       155 ~y~-----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         155 YYS-----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             hhe-----eeccCCCCHHHHHHHHHHhh
Confidence            997     78999999999999998765

>KOG3079|consensus

Probab=99.96  E-value=1.5e-28  Score=228.33  Aligned_cols=147  Identities=21%  Similarity=0.410  Sum_probs=133.0

Q ss_pred             ccCcccCcHHHHHHHHHHc-c----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC
Q psy11031         12 LDFPSHRNPLKMFNLFVSE-E----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK   80 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~-G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~   80 (520)
                      +++. |+|+|++||..+++ |          +++|.+||.+++++||.++|.+...++|||||||||+.+|+..|+..+.
T Consensus        32 y~ft-HlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~  110 (195)
T KOG3079|consen   32 YGFT-HLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ  110 (195)
T ss_pred             cCce-eecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhc
Confidence            3444 99999999877776 4          3577799999999999999987777788999999999999999999988


Q ss_pred             -CcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         81 -TINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        81 -~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                       .+++|++|+|+++++.+|+ .|+..+.|+|  .+++++|++.|+++|.||++||+++|+++.|||++++++||.++.+.
T Consensus       111 ~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~  190 (195)
T KOG3079|consen  111 GDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTA  190 (195)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHH
Confidence             7999999999999999999 6887767885  89999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q psy11031        157 VLK  159 (520)
Q Consensus       157 l~~  159 (520)
                      +..
T Consensus       191 id~  193 (195)
T KOG3079|consen  191 IDA  193 (195)
T ss_pred             hhc
Confidence            864

>PLN02842 nucleotide kinase

Probab=99.96  E-value=4.8e-28  Score=259.28  Aligned_cols=180  Identities=23%  Similarity=0.432  Sum_probs=161.5

Q ss_pred             EEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccccCC
Q psy11031        229 WVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTE  308 (520)
Q Consensus       229 ~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~~~  308 (520)
                      +|+|+|||||||||++|+++| |+.|+|+|+++|   ++.+.++++|..|++++.+|+++|++++..++.+++.  ...+
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~l-g~~hIs~gdLLR---~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~--~~~~   74 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKF-GLVHISTGDLLR---AEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLS--REDA   74 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHh-CCCEEEccHHHH---HHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh--Cccc
Confidence            489999999999999999998 999999999999   7888999999999999999999999999999999998  4443


Q ss_pred             -CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----h---------------------------ccCCCCC
Q psy11031        309 -ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----H---------------------------KGQIDNS  355 (520)
Q Consensus       309 -~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~---------------------------r~R~dD~  355 (520)
                       .+|||||||||+..|++.|++....|+.||+|||+++.+     +                           .+|.||+
T Consensus        75 ~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~  154 (505)
T PLN02842         75 KEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDT  154 (505)
T ss_pred             cCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCC
Confidence             689999999999999999998776788899999998752     1                           1578999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARP  416 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~~~~~  416 (520)
                      ++.+++|++.|++++.+++++|..  .++.|||++++++|+++|.+.|...+.++.+-.+.
T Consensus       155 eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~~~~~  213 (505)
T PLN02842        155 EEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKDATKMIKT  213 (505)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhhhhhhccc
Confidence            999999999999999999999964  58899999999999999999999888777654443

>KOG3078|consensus

Probab=99.95  E-value=4.1e-28  Score=235.66  Aligned_cols=180  Identities=22%  Similarity=0.379  Sum_probs=165.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ++.+++++|+|||||+|+|.+|++.| ++.||++|+++|   ++++++|++|.++++++..|++|||+++..++..++. 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~-~~~hl~tGdllr---~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~-   88 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNF-GVIHISTGDLLR---DEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLE-   88 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhc-CCccchhHHHHH---HHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcc-
Confidence            57899999999999999999999998 999999999999   8888999999999999999999999999998888888 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----------------------------------
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----------------------------------  348 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----------------------------------  348 (520)
                       ...|++||||||||||..||+.|......++.||.|+|+++.+.                                   
T Consensus        89 -~~~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgep  167 (235)
T KOG3078|consen   89 -NPRCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEP  167 (235)
T ss_pred             -ccccccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccCh
Confidence             66799999999999999999999998888999999999986420                                   


Q ss_pred             -ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        349 -KGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       349 -r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                       -+|.||+++.+++|++.|++++.++++||...+.+..++|.. .++||..+...+...+...
T Consensus       168 L~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~  229 (235)
T KOG3078|consen  168 LIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPER  229 (235)
T ss_pred             hhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhh
Confidence             268999999999999999999999999999999999999999 9999999998887766443

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.95  E-value=6.8e-28  Score=229.61  Aligned_cols=163  Identities=26%  Similarity=0.512  Sum_probs=147.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|+++| |+.|++++++++   +....+++.|..+++++.+|..+|++++.+++..+|.  ..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~-~~~~i~~~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~--~~   74 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKY-GLPHISTGDLLR---EEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLK--KP   74 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-CCeEEECcHHHH---HHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHh--cc
Confidence            48999999999999999999998 999999999999   7777778899999999999999999999999999998  44


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhh-----hc-----------------------cCCCCC
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVL-----HK-----------------------GQIDNS  355 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~-----~r-----------------------~R~dD~  355 (520)
                      ...+||||||||++..|++.|++...   .++.+|+|+|+++.+     .|                       +|.+|+
T Consensus        75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~  154 (194)
T cd01428          75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDN  154 (194)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCC
Confidence            45789999999999999999999886   678899999999753     12                       267889


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQV  395 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V  395 (520)
                      .+.+++|+..|++++.++++||.+.+.++.|||++++++|
T Consensus       155 ~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         155 EETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            9999999999999999999999998999999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.95  E-value=1.7e-26  Score=218.64  Aligned_cols=175  Identities=27%  Similarity=0.550  Sum_probs=154.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      .++|+|+|+|||||||+|+.|+++| |+.|+++|++++   .....+++.+..++.++.+|..+|++.+.+++..++.. 
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~-g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-   77 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLR---AEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVA-   77 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Confidence            5789999999999999999999998 999999999999   66556777889999999999999999999999988872 


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                      ....+.|||+||||++..|++.|...+..++.+|+|+|+.+.+.     |    .|.+++++.+.+|+..|+++..++++
T Consensus        78 ~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~  157 (188)
T TIGR01360        78 ALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIA  157 (188)
T ss_pred             ccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence            34457899999999999999999988777788999999987531     2    35677899999999999999999999


Q ss_pred             HhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      +|...+.++.|||+.++++|++.|...|.
T Consensus       158 ~y~~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       158 YYETKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             HHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            99877889999999999999999988875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PLN02674 adenylate kinase

Probab=99.95  E-value=4.7e-27  Score=232.39  Aligned_cols=147  Identities=21%  Similarity=0.374  Sum_probs=126.0

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh-
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK-   78 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~-   78 (520)
                      +-++++ |+|+|+++++.+.++          +++|++|||+++++++.++|...++.+||||||||||..||+.|.+. 
T Consensus        53 ~~~~~~-his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l  131 (244)
T PLN02674         53 DEYCLC-HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEML  131 (244)
T ss_pred             HHcCCc-EEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHH
Confidence            345677 999999988776554          34677999999999999999887788999999999999999776543 


Q ss_pred             ---cCCcCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCccc--hHHHHHHHHHHHhccc
Q psy11031         79 ---IKTINGVILIAWRQSLLERQID-Y------GAK---------------------LGHVI--LSLARMELANFYQNVT  125 (520)
Q Consensus        79 ---~~~pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~d--~e~i~~Rl~~Y~~~t~  125 (520)
                         +..+++||+|+||++++++|+. |      |..                     ..|.|  ++++++||+.|+++|.
T Consensus       132 ~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~  211 (244)
T PLN02674        132 AKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE  211 (244)
T ss_pred             HhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhH
Confidence               4689999999999999999984 3      211                     12554  8999999999999999


Q ss_pred             hHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031        126 PVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       126 pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      ||++||+++|+++.|||++++++||++|+.+|
T Consensus       212 pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        212 PVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999998876

>PLN02459 probable adenylate kinase

Probab=99.95  E-value=2.9e-27  Score=235.11  Aligned_cols=148  Identities=18%  Similarity=0.318  Sum_probs=124.1

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHHH
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYSD   77 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~~   77 (520)
                      +-++++ |+++|+++++.+..+          +++|.+|||++++++|.++|.+.  .+.+||||||||||..||+.|. 
T Consensus        51 ~~~~~~-~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le-  128 (261)
T PLN02459         51 KLLGVP-HIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILE-  128 (261)
T ss_pred             HHhCCc-EEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHH-
Confidence            345677 888888877655443          33566999999999999999864  3589999999999999996665 


Q ss_pred             hcCCcCEEEEEEcCHHHHHHHhh-h------Ccc--------------------------------CCccc--hHHHHHH
Q psy11031         78 KIKTINGVILIAWRQSLLERQID-Y------GAK--------------------------------LGHVI--LSLARME  116 (520)
Q Consensus        78 ~~~~pd~VI~L~~pd~~l~~Rl~-r------g~~--------------------------------~~r~d--~e~i~~R  116 (520)
                      ....+++||+|+||++++++|+. |      |..                                .+|.|  ++++++|
T Consensus       129 ~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kR  208 (261)
T PLN02459        129 GVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKAR  208 (261)
T ss_pred             hcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHHHHHH
Confidence            45689999999999999999983 3      211                                14554  8999999


Q ss_pred             HHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       117 l~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      |+.|+++|.||++||+++|+++.|||++++++||++|..+|.-
T Consensus       209 L~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        209 LRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             HHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence            9999999999999999999999999999999999999999864

>PRK14528 adenylate kinase; Provisional

Probab=99.93  E-value=4.1e-25  Score=210.97  Aligned_cols=145  Identities=17%  Similarity=0.265  Sum_probs=125.3

Q ss_pred             cccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh--
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK--   78 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~--   78 (520)
                      -++++ |+++|+.++..+.+|.          ..|.++||+++.+++.+++++.++.+||||||||||.+||+.|.+.  
T Consensus        24 ~~~~~-~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~  102 (186)
T PRK14528         24 RLSIP-QISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLK  102 (186)
T ss_pred             HhCCC-eeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHH
Confidence            34677 8888888777665542          2566999999999999999877788999999999999999777654  


Q ss_pred             --cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031         79 --IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF  153 (520)
Q Consensus        79 --~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i  153 (520)
                        +..+|.||+|+||++++.+|+ .|....+|.|  ++++++||..|++++.||++||+++|++++|||++++++||..|
T Consensus       103 ~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~  182 (186)
T PRK14528        103 NEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLI  182 (186)
T ss_pred             hcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence              357999999999999999999 4655567774  89999999999999999999999999999999999999999998


Q ss_pred             HHH
Q psy11031        154 RTA  156 (520)
Q Consensus       154 ~~~  156 (520)
                      ...
T Consensus       183 ~~~  185 (186)
T PRK14528        183 QKE  185 (186)
T ss_pred             HHh
Confidence            764

>PRK13808 adenylate kinase; Provisional

Probab=99.93  E-value=4.2e-25  Score=226.68  Aligned_cols=153  Identities=14%  Similarity=0.233  Sum_probs=130.2

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD--   77 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~--   77 (520)
                      .-++++ |+++|++|++.+.++          +.+|++|||+++++||.++|...++..||||||||||.+||+.|..  
T Consensus        22 ~~ygl~-~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll  100 (333)
T PRK13808         22 QQYGIV-QLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALL  100 (333)
T ss_pred             HHhCCc-eecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHH
Confidence            345787 999999998765444          2356699999999999999988778899999999999999976654  


Q ss_pred             --hcCCcCEEEEEEcCHHHHHHHhh-hCc------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031         78 --KIKTINGVILIAWRQSLLERQID-YGA------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP  146 (520)
Q Consensus        78 --~~~~pd~VI~L~~pd~~l~~Rl~-rg~------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~  146 (520)
                        .+..||+||+|+||++++.+|+. |..      ...|.|  ++.+.+||..|++++.||++||.+.+.++.|||++++
T Consensus       101 ~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~si  180 (333)
T PRK13808        101 KDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTI  180 (333)
T ss_pred             HhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCH
Confidence              34589999999999999999994 311      124554  8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy11031        147 VEVYADFRTAVLKILNK  163 (520)
Q Consensus       147 eeV~~~i~~~l~~~~~~  163 (520)
                      ++||++|+..|...+..
T Consensus       181 EEV~eeI~~~L~~~~~~  197 (333)
T PRK13808        181 DEVTREIGRVLAAVGAA  197 (333)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999999987755

>PRK14529 adenylate kinase; Provisional

Probab=99.92  E-value=9.5e-25  Score=213.54  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=111.4

Q ss_pred             cHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHH
Q psy11031         19 NPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSL   94 (520)
Q Consensus        19 s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~   94 (520)
                      .+|..++.+|.+|.    +|||+++++++.++|++.+ .+||||||||||.+||+.|.+    .+..|++||+|+||+++
T Consensus        44 ~lg~~i~~~i~~G~----lvpdei~~~lv~~~l~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~  118 (223)
T PRK14529         44 ELGKKAKEYIDRGD----LVPDDITIPMILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREV  118 (223)
T ss_pred             hHHHHHHHHHhccC----cchHHHHHHHHHHHHhccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            34444455565666    9999999999999998766 899999999999999977654    34689999999999999


Q ss_pred             HHHHhh-hC------c-----------------------cCCccc---hHHHHHHHHHHHhc---cchHHHHhhh-----
Q psy11031         95 LERQID-YG------A-----------------------KLGHVI---LSLARMELANFYQN---VTPVTDFFDQ-----  133 (520)
Q Consensus        95 l~~Rl~-rg------~-----------------------~~~r~d---~e~i~~Rl~~Y~~~---t~pvi~~Y~~-----  133 (520)
                      +++|+. |+      .                       ...|.|   +|++++||+.|+++   +.|+++||++     
T Consensus       119 l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~  198 (223)
T PRK14529        119 AKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKG  198 (223)
T ss_pred             HHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhccccc
Confidence            999993 32      1                       023664   57999999999998   5589999996     


Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHH
Q psy11031        134 RGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       134 ~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +|++++|||++++++||++|...|
T Consensus       199 ~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        199 STKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHh
Confidence            889999999999999999998876

>TIGR01351 adk adenylate kinases

Probab=99.91  E-value=3.9e-24  Score=207.71  Aligned_cols=146  Identities=15%  Similarity=0.337  Sum_probs=124.7

Q ss_pred             cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHHhc
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSDKI   79 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~~~   79 (520)
                      -++++ |+++|++++..+.++          .++|++|||+++.+++.++|++.. ..+||||||||||..||+.|.+.+
T Consensus        22 ~~g~~-~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~  100 (210)
T TIGR01351        22 KYGLP-HISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALL  100 (210)
T ss_pred             HcCCC-eeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHh
Confidence            45777 999999988765543          235669999999999999998743 478999999999999998888777


Q ss_pred             C-CcCEEEEEEcCHHHHHHHhh-hC------c---------------------cCCccc--hHHHHHHHHHHHhccchHH
Q psy11031         80 K-TINGVILIAWRQSLLERQID-YG------A---------------------KLGHVI--LSLARMELANFYQNVTPVT  128 (520)
Q Consensus        80 ~-~pd~VI~L~~pd~~l~~Rl~-rg------~---------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi  128 (520)
                      . .|+.||+|+||++++.+|+. |+      .                     ..+|.|  ++++++|+..|++++.||+
T Consensus       101 ~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~  180 (210)
T TIGR01351       101 KEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI  180 (210)
T ss_pred             ccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHH
Confidence            6 79999999999999999994 32      1                     013553  8899999999999999999


Q ss_pred             HHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031        129 DFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       129 ~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +||++.++++.|||++++++||+.|.+.|
T Consensus       181 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       181 DYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             HHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            99999999999999999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14526 adenylate kinase; Provisional

Probab=99.91  E-value=7e-24  Score=206.37  Aligned_cols=146  Identities=13%  Similarity=0.241  Sum_probs=117.6

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      +.++ |++.|+.+++.+.++          .++|.+|||+++++++.++|+...+.+||||||||||..||..|.+ ...
T Consensus        24 ~~~~-~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~-~~~  101 (211)
T PRK14526         24 LNYY-HISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDK-FLP  101 (211)
T ss_pred             hCCc-eeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEEEECCCCCHHHHHHHHH-hcC
Confidence            3455 666666655433322          1244499999999999999987677899999999999999977665 333


Q ss_pred             cCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031         82 INGVILIAWRQSLLERQID-Y------GAK---------------------LGHVI--LSLARMELANFYQNVTPVTDFF  131 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y  131 (520)
                      ...||+|+||++++++|+. |      |..                     .+|.|  ++++++||+.|+++|.||++||
T Consensus       102 ~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y  181 (211)
T PRK14526        102 NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFY  181 (211)
T ss_pred             CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHH
Confidence            3578899999999999983 3      211                     23554  8999999999999999999999


Q ss_pred             hhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        132 DQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       132 ~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ++.++++.|||++++++||++|...|..
T Consensus       182 ~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        182 SKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999999998864

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.90  E-value=1.4e-23  Score=206.51  Aligned_cols=145  Identities=17%  Similarity=0.276  Sum_probs=120.4

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhc--CCCCCcEEEeCCCCCHHhHHHHHH
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKM--SPAAKAFLISGYPRNMRDVVEYSD   77 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~--~~~~~G~ILDGFPRt~~QA~~~~~   77 (520)
                      +-++++ |+++|+++++.+.++          .++|.+|||+++++++.+++.+  .++..||||||||||..||..|. 
T Consensus        28 ~~~g~~-~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~-  105 (229)
T PTZ00088         28 KKENLK-HINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELG-  105 (229)
T ss_pred             HHhCCc-EEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCceEEEecCCCCHHHHHHHH-
Confidence            445777 888888887665442          2345599999999999999987  45689999999999999996655 


Q ss_pred             hcCCcCEEEEEEcCHHHHHHHhh-h------Cc-------------------------------cCCccc--hHHHHHHH
Q psy11031         78 KIKTINGVILIAWRQSLLERQID-Y------GA-------------------------------KLGHVI--LSLARMEL  117 (520)
Q Consensus        78 ~~~~pd~VI~L~~pd~~l~~Rl~-r------g~-------------------------------~~~r~d--~e~i~~Rl  117 (520)
                      ....|++||+|++|++++++|+. |      |.                               ...|.|  ++++++||
T Consensus       106 ~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl  185 (229)
T PTZ00088        106 KITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRL  185 (229)
T ss_pred             hcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCcccccCCCCCCHHHHHHHH
Confidence            45689999999999999999983 2      21                               113554  88999999


Q ss_pred             HHHHhccchHHHHhhhCCc-EEEE---eCCCChHHHHHHHHHH
Q psy11031        118 ANFYQNVTPVTDFFDQRGM-LIAV---NGERNPVEVYADFRTA  156 (520)
Q Consensus       118 ~~Y~~~t~pvi~~Y~~~~~-l~~I---da~~~~eeV~~~i~~~  156 (520)
                      +.|+++|.||++||+++|+ ++.|   ||++++++||+.|.+.
T Consensus       186 ~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        186 NTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             HHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence            9999999999999999999 9888   8999999999988764

>PRK14531 adenylate kinase; Provisional

Probab=99.89  E-value=1.1e-22  Score=193.57  Aligned_cols=142  Identities=16%  Similarity=0.292  Sum_probs=119.7

Q ss_pred             ccccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh-
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK-   78 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~-   78 (520)
                      +-++++ |+++|+.++..+..+.          .+|++|||+++..++.++|... ...||||||||||..||..|.+. 
T Consensus        24 ~~~g~~-~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~g~ilDGfpr~~~q~~~~~~~~  101 (183)
T PRK14531         24 AAHGLR-HLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSGGWLLDGFPRTVAQAEALEPLL  101 (183)
T ss_pred             HHhCCC-eEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCCcEEEeCCCCCHHHHHHHHHHH
Confidence            345677 8888888776654442          4566999999999999999753 47899999999999999876653 


Q ss_pred             ---cCCcCEEEEEEcCHHHHHHHhh-hCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031         79 ---IKTINGVILIAWRQSLLERQID-YGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD  152 (520)
Q Consensus        79 ---~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~  152 (520)
                         ...++.||+|+||++++.+|+. |    +|.  .++.+++|+..|++++.|+++||+++++++.|||++++++||.+
T Consensus       102 ~~~~~~~~~vi~l~~~~~~l~~Rl~~R----~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~  177 (183)
T PRK14531        102 EELKQPIEAVVLLELDDAVLIERLLAR----GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITER  177 (183)
T ss_pred             HHcCCCCCeEEEEECCHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence               3478999999999999999994 5    343  37889999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11031        153 FRTAV  157 (520)
Q Consensus       153 i~~~l  157 (520)
                      |.+.|
T Consensus       178 i~~~l  182 (183)
T PRK14531        178 IEKVL  182 (183)
T ss_pred             HHHHh
Confidence            98875

>PRK14527 adenylate kinase; Provisional

Probab=99.89  E-value=2.3e-22  Score=192.42  Aligned_cols=144  Identities=18%  Similarity=0.292  Sum_probs=122.0

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---   78 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---   78 (520)
                      +.++ |++.|+.++..+..+          ..+|.++|++++.+++.+++...++ .||||||||||..||+.|...   
T Consensus        30 ~~~~-~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~-~~~VlDGfpr~~~q~~~~~~~~~~  107 (191)
T PRK14527         30 LGLK-KLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP-VRVIFDGFPRTLAQAEALDRLLEE  107 (191)
T ss_pred             hCCC-CCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-CcEEEcCCCCCHHHHHHHHHHHHH
Confidence            3566 888888887655432          1245599999999999999986554 689999999999999766542   


Q ss_pred             -cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031         79 -IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR  154 (520)
Q Consensus        79 -~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~  154 (520)
                       +..++.||+|+||++++.+|+ .|+...+|.|  ++.+++|++.|++++.||++||+++++++.|||++++++||++|+
T Consensus       108 ~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~  187 (191)
T PRK14527        108 LGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARIL  187 (191)
T ss_pred             cCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHH
Confidence             357899999999999999999 5665557774  889999999999999999999999999999999999999999998


Q ss_pred             HHH
Q psy11031        155 TAV  157 (520)
Q Consensus       155 ~~l  157 (520)
                      ..|
T Consensus       188 ~~l  190 (191)
T PRK14527        188 KAL  190 (191)
T ss_pred             Hhh
Confidence            875

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.88  E-value=1.4e-21  Score=190.54  Aligned_cols=148  Identities=18%  Similarity=0.300  Sum_probs=124.2

Q ss_pred             cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH---
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD---   77 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~---   77 (520)
                      -++++ |+++|+++++.+.++          .++|+++||+++.+++.++|++.++.+||||||||||..||+.|.+   
T Consensus        23 ~~~~~-~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~  101 (215)
T PRK00279         23 KYGIP-HISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLK  101 (215)
T ss_pred             HhCCc-EEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHH
Confidence            45666 888888877665543          2356699999999999999987777789999999999999987743   


Q ss_pred             -hcCCcCEEEEEEcCHHHHHHHhh-hC------c---------------------cCCccc--hHHHHHHHHHHHhccch
Q psy11031         78 -KIKTINGVILIAWRQSLLERQID-YG------A---------------------KLGHVI--LSLARMELANFYQNVTP  126 (520)
Q Consensus        78 -~~~~pd~VI~L~~pd~~l~~Rl~-rg------~---------------------~~~r~d--~e~i~~Rl~~Y~~~t~p  126 (520)
                       .+..++.||+|+||++++.+|+. |.      .                     ...|.|  ++.+++||..|++++.|
T Consensus       102 ~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~  181 (215)
T PRK00279        102 ELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAP  181 (215)
T ss_pred             HcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHH
Confidence             34578999999999999999993 32      1                     123443  88999999999999999


Q ss_pred             HHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      |++||++.|+++.|||++++++||+.|.+.|+.
T Consensus       182 i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        182 LIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             HHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998864

>KOG3078|consensus

Probab=99.88  E-value=5.9e-22  Score=192.74  Aligned_cols=150  Identities=19%  Similarity=0.384  Sum_probs=127.2

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      +.+. |+++|+++++.|.+|          ++.|++|||++++.++.++|....|++||||||||||..||.++.+.+..
T Consensus        39 ~~~~-hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~~~ildg~Prt~~qa~~l~~~~~~  117 (235)
T KOG3078|consen   39 FGVI-HISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQKGFILDGFPRTVQQAEELLDRIAQ  117 (235)
T ss_pred             cCCc-cchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccccccccCCCCcchHHHHHHHHccCC
Confidence            3344 788888777766665          34666999999999888888765599999999999999999999999999


Q ss_pred             cCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031         82 INGVILIAWRQSLLERQID-Y------GAK---------------------LGHVI--LSLARMELANFYQNVTPVTDFF  131 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y  131 (520)
                      +|.||+|+||++.|++|+. |      |..                     ..|.|  ++++++||..|++++.|+++||
T Consensus       118 ~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY  197 (235)
T KOG3078|consen  118 IDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYY  197 (235)
T ss_pred             cceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHH
Confidence            9999999999999999984 3      221                     01221  8899999999999999999999


Q ss_pred             hhCCcEEEEeCCCChHHHHHHHHHHHHHHhcc
Q psy11031        132 DQRGMLIAVNGERNPVEVYADFRTAVLKILNK  163 (520)
Q Consensus       132 ~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~~~  163 (520)
                      +++|++.+++|.. .++||..+...+......
T Consensus       198 ~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~  228 (235)
T KOG3078|consen  198 KKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPE  228 (235)
T ss_pred             HhcCeeeeccCcc-hhHhHHHHHHHHHhhhhh
Confidence            9999999999999 999999999999887744

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.87  E-value=5.3e-22  Score=182.72  Aligned_cols=118  Identities=14%  Similarity=0.337  Sum_probs=99.0

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----   77 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----   77 (520)
                      ++++ |+++|+++++.+.++          .++|++|||++++++|.++|.+..+.+||||||||||.+||..|.+    
T Consensus        20 ~~~~-~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~   98 (151)
T PF00406_consen   20 YGLV-HISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILDGFPRTLEQAEALEEILEE   98 (151)
T ss_dssp             HTSE-EEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHH
T ss_pred             cCcc-eechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeeeeccccHHHHHHHHHHHhh
Confidence            4677 999998888776554          3467799999999999999987667999999999999999998888    


Q ss_pred             hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         78 KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        78 ~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      ....|++||+|+||++.+.+|+..      .+.+.+++||+.|++++.||++||+++|+
T Consensus        99 ~~~~~~~vi~L~~~~~~~~~R~~~------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~  151 (151)
T PF00406_consen   99 EGIPPDLVIFLDCPDETLIERLSQ------DNEEVIKKRLEEYRENTEPILDYYKEQGK  151 (151)
T ss_dssp             TTSEESEEEEEE--HHHHHHHHHT------GSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cccchheeeccccchhhhhhhccc------CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            778999999999999999999854      44789999999999999999999999874

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14532 adenylate kinase; Provisional

Probab=99.86  E-value=6.4e-21  Score=181.55  Aligned_cols=148  Identities=16%  Similarity=0.194  Sum_probs=125.3

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD--   77 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~--   77 (520)
                      +-++++ |+++|+.+++.+.+|          .+.|+++||+++.+++.+++....+..||||||||||..||+.|.+  
T Consensus        22 ~~~g~~-~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l  100 (188)
T PRK14532         22 EERGMV-QLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKML  100 (188)
T ss_pred             HHcCCe-EEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHH
Confidence            344676 888888887765433          1256699999999999999987778899999999999999987653  


Q ss_pred             --hcCCcCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031         78 --KIKTINGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD  152 (520)
Q Consensus        78 --~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~  152 (520)
                        .+..||.+|+|+||++++.+|+. |+...+|.+  .+.+.+|+..|++++.|+++||++.++++.|||++++++|+++
T Consensus       101 ~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~  180 (188)
T PRK14532        101 ASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAAS  180 (188)
T ss_pred             HhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence              34689999999999999999994 544346664  6788999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy11031        153 FRTAVL  158 (520)
Q Consensus       153 i~~~l~  158 (520)
                      |.+.|.
T Consensus       181 I~~~l~  186 (188)
T PRK14532        181 IDAALE  186 (188)
T ss_pred             HHHHHh
Confidence            998875

>PRK02496 adk adenylate kinase; Provisional

Probab=99.86  E-value=5.8e-21  Score=181.35  Aligned_cols=143  Identities=15%  Similarity=0.360  Sum_probs=120.7

Q ss_pred             ccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc--
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI--   79 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~--   79 (520)
                      +.++ |++.|+.++..+.++.          .+|.++|++++.+++.++|++.++..||||||||||..||..+.+..  
T Consensus        25 ~~~~-~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~  103 (184)
T PRK02496         25 LHIP-HISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQE  103 (184)
T ss_pred             hCCc-EEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHh
Confidence            5676 8888888877654442          25669999999999999998777889999999999999996665432  


Q ss_pred             --CCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         80 --KTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        80 --~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                        ..|+.+|+|++|++++.+|+. |+..  ...++.+++|+..|++++.||++||++.+.++.|||++++++|+++|...
T Consensus       104 ~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~  181 (184)
T PRK02496        104 IGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAA  181 (184)
T ss_pred             cCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence              479999999999999999994 4321  12378899999999999999999999999999999999999999999887


Q ss_pred             H
Q psy11031        157 V  157 (520)
Q Consensus       157 l  157 (520)
                      |
T Consensus       182 l  182 (184)
T PRK02496        182 L  182 (184)
T ss_pred             h
Confidence            6

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.86  E-value=5.6e-21  Score=180.76  Aligned_cols=144  Identities=17%  Similarity=0.364  Sum_probs=121.5

Q ss_pred             ccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---   78 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---   78 (520)
                      ++++ |+++|+.++..+.++.          .+|.++||+++.+++.+++.... .+||||||||||..|+..|...   
T Consensus        23 ~~~~-~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~  100 (183)
T TIGR01359        23 FGFT-HLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKFLIDGFPRNEENLEAWEKLMDN  100 (183)
T ss_pred             cCCe-EEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcEEEeCCCCCHHHHHHHHHHHhc
Confidence            4666 8888888776655332          35669999999999999997644 7899999999999999777643   


Q ss_pred             cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHH
Q psy11031         79 IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT  155 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~  155 (520)
                      ...|+.+|+|+||.+++.+|+ .|+...+|.+  .+.+++|+..|.+++.|+++||++.+.++.|||++++++|+++|.+
T Consensus       101 ~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~  180 (183)
T TIGR01359       101 KVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEK  180 (183)
T ss_pred             CCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHH
Confidence            357999999999999999999 4554446664  7889999999999999999999998889999999999999999988


Q ss_pred             HH
Q psy11031        156 AV  157 (520)
Q Consensus       156 ~l  157 (520)
                      .+
T Consensus       181 ~l  182 (183)
T TIGR01359       181 IF  182 (183)
T ss_pred             Hh
Confidence            75

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=99.85  E-value=1.1e-20  Score=186.73  Aligned_cols=147  Identities=19%  Similarity=0.334  Sum_probs=125.3

Q ss_pred             cccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc-
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI-   79 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~-   79 (520)
                      -++++ |++.|+++++.+..+.          ..|.++||+++++++.++|... ..+||||||||||..||..|.+.. 
T Consensus        66 ~~g~~-his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~-~~~~~ILDG~Prt~~q~~~l~~~~~  143 (234)
T PLN02200         66 TFGFK-HLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS-DNNKFLIDGFPRTEENRIAFERIIG  143 (234)
T ss_pred             HhCCe-EEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-CCCeEEecCCcccHHHHHHHHHHhc
Confidence            34677 9999999987654331          2466999999999999999753 457999999999999998887654 


Q ss_pred             CCcCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         80 KTINGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        80 ~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                      ..||.||+|+||++++.+|+. |+.  +|.|  ++.+++|++.|++++.|+++||++.+.++.|||++++++||+.|++.
T Consensus       144 ~~pd~vi~Ld~~~e~~~~Rl~~R~~--~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~  221 (234)
T PLN02200        144 AEPNVVLFFDCPEEEMVKRVLNRNQ--GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPI  221 (234)
T ss_pred             cCCCEEEEEECCHHHHHHHHHcCcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence            479999999999999999994 432  4554  78999999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy11031        157 VLKIL  161 (520)
Q Consensus       157 l~~~~  161 (520)
                      +...+
T Consensus       222 l~~~~  226 (234)
T PLN02200        222 FAACE  226 (234)
T ss_pred             HHHcC
Confidence            98765

>PRK14530 adenylate kinase; Provisional

Probab=99.83  E-value=9e-20  Score=177.78  Aligned_cols=144  Identities=21%  Similarity=0.348  Sum_probs=118.8

Q ss_pred             cccCcccCcHHHHHHHHH-----Hcc---------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHH
Q psy11031         11 LLDFPSHRNPLKMFNLFV-----SEE---------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYS   76 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i-----~~G---------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~   76 (520)
                      .++++ |+++|+.++..+     +.+         ...|.++||+++.+++.++|..   ..||||||||||.+||+.|.
T Consensus        26 ~~~~~-~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~---~~~~IldG~pr~~~q~~~l~  101 (215)
T PRK14530         26 EFGVE-HVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD---ADGFVLDGYPRNLEQAEYLE  101 (215)
T ss_pred             HhCCe-EEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCEEEcCCCCCHHHHHHHH
Confidence            34677 999988887655     111         2356699999999999998864   46999999999999996554


Q ss_pred             HhcCCcCEEEEEEcCHHHHHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccch
Q psy11031         77 DKIKTINGVILIAWRQSLLERQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTP  126 (520)
Q Consensus        77 ~~~~~pd~VI~L~~pd~~l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~p  126 (520)
                       ....++.||+|+||++++.+|+. |+.                           ...|.|  ++.+++||..|++++.|
T Consensus       102 -~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~  180 (215)
T PRK14530        102 -SITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEP  180 (215)
T ss_pred             -HhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHH
Confidence             44579999999999999999984 321                           113443  88999999999999999


Q ss_pred             HHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      |++||+++++++.|||++++++||+.|.+.|+.
T Consensus       181 v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        181 VIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             HHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999874

>PLN02842 nucleotide kinase

Probab=99.82  E-value=1.7e-19  Score=193.64  Aligned_cols=143  Identities=13%  Similarity=0.220  Sum_probs=121.7

Q ss_pred             cccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHH
Q psy11031         15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQS   93 (520)
Q Consensus        15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~   93 (520)
                      +.++.+|..+++++.+|.    +|||+++..++.++++..+ .++||||||||||..||+.|.+....||+||+|+||++
T Consensus        37 ~~~T~iG~~Ire~l~~G~----lvPdeiv~~ll~drl~~~~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpde  112 (505)
T PLN02842         37 SAGTDIGKRAKEFMNSGR----LVPDEIVIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDE  112 (505)
T ss_pred             ccCCHHHHHHHHHHhCCC----CCcHHHHHHHHHHHHhCccccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence            445556666777777777    9999999999999998654 47899999999999999888777778999999999999


Q ss_pred             HHHHHhh-h------Ccc-----------------CCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChH
Q psy11031         94 LLERQID-Y------GAK-----------------LGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPV  147 (520)
Q Consensus        94 ~l~~Rl~-r------g~~-----------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~e  147 (520)
                      ++.+|+. |      |..                 .+|.|  ++++++||..|++++.||+++|...  ++.|||+++++
T Consensus       113 vlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~r--l~~IDAsqs~E  190 (505)
T PLN02842        113 ILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDI--MVKIDGNRPKE  190 (505)
T ss_pred             HHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcE--EEEEECCCCHH
Confidence            9999973 2      221                 24543  8899999999999999999999864  99999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy11031        148 EVYADFRTAVLKILNK  163 (520)
Q Consensus       148 eV~~~i~~~l~~~~~~  163 (520)
                      +|+++|++.|...+.+
T Consensus       191 eVfeeI~~iL~~~L~~  206 (505)
T PLN02842        191 VVFEEISSLLSQIQKD  206 (505)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988755

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.80  E-value=7.3e-19  Score=166.78  Aligned_cols=137  Identities=15%  Similarity=0.303  Sum_probs=116.7

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---   78 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---   78 (520)
                      +.+| |+|.|++++..+.++          +++|++|||+++..++.++|...+|..|||+||||||+.||..+...   
T Consensus        24 ~~i~-hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~  102 (178)
T COG0563          24 LGLP-HLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKE  102 (178)
T ss_pred             hCCc-EEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence            7788 999888877655444          23555999999999999999887776699999999999999666532   


Q ss_pred             -cCCcCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031         79 -IKTINGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR  154 (520)
Q Consensus        79 -~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~  154 (520)
                       +..++.|+.++++++.+..|+. |..   |.|  ++.+++|+..|++.+.|++.||.     ++|||.+++++|++++.
T Consensus       103 ~g~~~d~v~~~~~~~~~~~~r~~~r~~---r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~  174 (178)
T COG0563         103 LGVRLDMVIELDVPEELLLERLLGRRV---REDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADIL  174 (178)
T ss_pred             cCCCcceEEeeeCCHHHHHHHHhCccc---cccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHH
Confidence             4689999999999999999993 432   443  89999999999999999999998     89999999999999998


Q ss_pred             HHH
Q psy11031        155 TAV  157 (520)
Q Consensus       155 ~~l  157 (520)
                      +.+
T Consensus       175 ~~l  177 (178)
T COG0563         175 KAL  177 (178)
T ss_pred             Hhh
Confidence            765

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.77  E-value=5.2e-18  Score=161.53  Aligned_cols=137  Identities=16%  Similarity=0.316  Sum_probs=113.3

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC-
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK-   80 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~-   80 (520)
                      ++++ |+++|++++..+..+          ..+|.++|++++.+++..+|......+||||||||||..||..|.+... 
T Consensus        23 ~~~~-~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~  101 (194)
T cd01428          23 YGLP-HISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE  101 (194)
T ss_pred             cCCe-EEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhc
Confidence            4666 788777776655432          1235599999999999999986556789999999999999988887765 


Q ss_pred             --CcCEEEEEEcCHHHHHHHhh-hCcc-------------------CCcc--chHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         81 --TINGVILIAWRQSLLERQID-YGAK-------------------LGHV--ILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        81 --~pd~VI~L~~pd~~l~~Rl~-rg~~-------------------~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                        .++++|+|+||++++.+|+. |+..                   ..|.  +++.+++|+..|++++.|+++||++.++
T Consensus       102 ~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~  181 (194)
T cd01428         102 GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGK  181 (194)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence              89999999999999999994 3311                   1243  3789999999999999999999999999


Q ss_pred             EEEEeCCCChHHH
Q psy11031        137 LIAVNGERNPVEV  149 (520)
Q Consensus       137 l~~Ida~~~~eeV  149 (520)
                      ++.|||++++++|
T Consensus       182 ~~~id~~~~~~~v  194 (194)
T cd01428         182 LVEIDGSGDIDEV  194 (194)
T ss_pred             EEEEECCCCcCcC
Confidence            9999999999875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.74  E-value=7.5e-17  Score=152.60  Aligned_cols=146  Identities=22%  Similarity=0.381  Sum_probs=122.1

Q ss_pred             cCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         13 DFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      +++ |++.|+.++..+..+          .++|.++|++++.+++.+++... ....|||||||||+..|+..|...+..
T Consensus        28 g~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~  106 (188)
T TIGR01360        28 GFT-HLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGP  106 (188)
T ss_pred             CCc-EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence            666 888887776554322          12455999999999999988653 357899999999999999888777778


Q ss_pred             cCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHH
Q psy11031         82 INGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                      |+.+|+|+||.+++.+|+ .|+...+|.+  ++.+.+|+..|++++.|++++|+..+.++.|||++++++|++.|+..++
T Consensus       107 ~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       107 PTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             CCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            999999999999999999 4554345664  6789999999999999999999988889999999999999999999886


Q ss_pred             H
Q psy11031        159 K  159 (520)
Q Consensus       159 ~  159 (520)
                      .
T Consensus       187 ~  187 (188)
T TIGR01360       187 K  187 (188)
T ss_pred             c
Confidence            4

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13974 thymidylate kinase; Provisional

Probab=99.70  E-value=2.1e-16  Score=153.92  Aligned_cols=177  Identities=13%  Similarity=0.135  Sum_probs=124.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee--hhhHHhhhhcccccCCcchHHHHhhhh--cCCccchHHHHHHH--H
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS--LGKLLRYFANIEDDGEGLNSRIKSSVS--AGDFVNRDVVLDIV--Y  298 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is--~gdLlr~~~~~~~~~t~~g~~i~~~l~--~G~~vPd~lv~~ll--~  298 (520)
                      ..+|+|+|++||||||||+.|++.+ ......  -.+.+.   .....++++|+.|++++.  .|...++..+..++  .
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l-~~~g~~~~~~~~~~---~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a   78 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWL-PSSGLMPKGAKLII---TREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAA   78 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH-HhcCccccCCeeee---eeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHH
Confidence            5789999999999999999999876 321110  012222   223467899999999996  34556776655554  2


Q ss_pred             HHHhc----cccCCCcE-EEE-----------eCCCCCH--HHHHHHHhhc---CCCCCEEEecCChhhhh-c--cCCCC
Q psy11031        299 AEMKK----TKYTEADG-IVI-----------DGFPREM--SQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQIDN  354 (520)
Q Consensus       299 ~~l~~----~~~~~~~G-~IL-----------DGFPrt~--~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R~dD  354 (520)
                      +|...    -......| |||           +|||++.  +++..++...   ..|+.+|+|+|+++.+. |  +|.+|
T Consensus        79 dr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD  158 (212)
T PRK13974         79 DRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPD  158 (212)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccC
Confidence            22110    01111233 677           7888854  4466776532   25778999999998753 2  45555


Q ss_pred             CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                         .++.|...|++.+.+.+.+|.+.+.+++|||++++++|+++|...|...+.
T Consensus       159 ---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~  209 (212)
T PRK13974        159 ---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFS  209 (212)
T ss_pred             ---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence               466788899999999999999888999999999999999999999986543

>PRK01184 hypothetical protein; Provisional

Probab=99.60  E-value=5.6e-14  Score=133.31  Aligned_cols=165  Identities=19%  Similarity=0.311  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cCC-----cchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DGE-----GLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~t-----~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      ++|+|+|+|||||||+|+ +++++ |+.++++||++|   ++.. .+.     ..|..+.....  .+.+ ..+..++..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~-g~~~i~~~d~lr---~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~   73 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREM-GIPVVVMGDVIR---EEVKKRGLEPTDENIGKVAIDLRK--ELGM-DAVAKRTVP   73 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHc-CCcEEEhhHHHH---HHHHHcCCCCCcHHHHHHHHHHHH--HHCh-HHHHHHHHH
Confidence            479999999999999987 77887 999999999999   4432 122     24555554433  2233 344455556


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hccCCCC--CHHHHHHHHHHHHHHhHH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HKGQIDN--SVSAFRRRLELFRERTLP  372 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r~R~dD--~~e~~~~Rl~~f~~~~~~  372 (520)
                      ++.  . .+...+|+||| |+..|++.+.+.+.....+|+++|+.+.+     .|+|.+|  +.+.+.+|.+....  .+
T Consensus        74 ~i~--~-~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~--~~  147 (184)
T PRK01184         74 KIR--E-KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELS--WG  147 (184)
T ss_pred             HHH--h-cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhc--cC
Confidence            666  2 34678999999 89999999988776556799999999763     2444444  46667777654321  22


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      ..+.+...+  ++||.+.+.+++.+++...+...
T Consensus       148 ~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~~  179 (184)
T PRK01184        148 IGEVIALAD--YMIVNDSTLEEFRARVRKLLERI  179 (184)
T ss_pred             HHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHHH
Confidence            444554333  35677889999999988776543

>PRK08356 hypothetical protein; Provisional

Probab=99.59  E-value=2e-14  Score=138.09  Aligned_cols=166  Identities=14%  Similarity=0.257  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCC---cchHH----HHhhhhcCCccch----HHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGE---GLNSR----IKSSVSAGDFVNR----DVV  293 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t---~~g~~----i~~~l~~G~~vPd----~lv  293 (520)
                      .+|+|+|||||||||+|+.|+ ++ |+.|||+|+.++... ......+   ..+..    ...+++.|..+|+    +++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~-g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EK-GFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HC-CCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            579999999999999999996 56 999999999765100 1111111   22222    2567788888885    677


Q ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCC------CHHHHHHHHH
Q psy11031        294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDN------SVSAFRRRLE  364 (520)
Q Consensus       294 ~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD------~~e~~~~Rl~  364 (520)
                      .+++.+++.  .  +. .|||||| |+.+|++.|...   ...+|+++|+.+.+. |  .|...      +.+.++++ .
T Consensus        84 ~~~~~~~~~--~--~~-~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~-~  153 (195)
T PRK08356         84 IRLAVDKKR--N--CK-NIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF-D  153 (195)
T ss_pred             HHHHHHHhc--c--CC-eEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH-H
Confidence            777766665  1  23 5999999 999999999863   246899999987632 1  33322      33334322 2


Q ss_pred             HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        365 LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       365 ~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ..+.......++. ....++ |+.+.+.+++.++|...+..
T Consensus       154 ~~~~~l~~~~~~~-~~aD~v-I~N~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        154 EWEEKLYHTTKLK-DKADFV-IVNEGTLEELRKKVEEILRE  192 (195)
T ss_pred             HHHHHhhhhhhHH-HhCcEE-EECCCCHHHHHHHHHHHHHH
Confidence            2222111121222 222233 45578999999998887754

>PRK13973 thymidylate kinase; Provisional

Probab=99.51  E-value=5e-13  Score=130.33  Aligned_cols=164  Identities=14%  Similarity=0.205  Sum_probs=104.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC--C-c-----------c
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG--D-F-----------V  288 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G--~-~-----------v  288 (520)
                      ++.|+|.|++||||||||++|++++  -|+.++.+        .+. .++..|+.+++++..+  . .           .
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~--------~~p-~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~   73 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT--------REP-GGSPGAEAIRHVLLSGAAELYGPRMEALLFAAA   73 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE--------ECC-CCCchHHHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence            5789999999999999999999874  16667665        121 2344455555444321  1 1           1


Q ss_pred             chHHHHHHHHHHHhccccCCCcEEEEeCC----------CCC--HHHHHHHHhhc---CCCCCEEEecCChhhhh-c--c
Q psy11031        289 NRDVVLDIVYAEMKKTKYTEADGIVIDGF----------PRE--MSQLIDFENKY---QIHPPMILIDCSKLVLH-K--G  350 (520)
Q Consensus       289 Pd~lv~~ll~~~l~~~~~~~~~G~ILDGF----------Prt--~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~  350 (520)
                      +.+.+.+++...+.     .+.-+|.|+|          ++.  .+|+..|+...   ..|+.||+||||++... |  .
T Consensus        74 r~~~~~~~i~~~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~  148 (213)
T PRK13973         74 RDDHVEEVIRPALA-----RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAK  148 (213)
T ss_pred             HHHHHHHHHHHHHH-----CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHh
Confidence            22334444555555     3445667766          443  45777777543   35788999999998642 1  1


Q ss_pred             CC--------C-CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        351 QI--------D-NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       351 R~--------d-D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      |.        + ++.+.++++.+.|.+..    +.|.  +.+++|||++++++|+++|...|...+.
T Consensus       149 R~~~~~~~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        149 RRGSDTPDRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             ccCCCccCchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence            21        1 13345556666666533    3332  3588999999999999999999987554

>PRK03839 putative kinase; Provisional

Probab=99.51  E-value=2.4e-13  Score=128.65  Aligned_cols=147  Identities=12%  Similarity=0.205  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|++|++++ |+.|++++++++   +..     .+.....   .+     +.....+...+.  ..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~~~---~~~-----~~~~~~~---~~-----~~~~~~l~~~~~--~~   62 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFAL---KKG-----IGEEKDD---EM-----EIDFDKLAYFIE--EE   62 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhhhh---hcC-----CcccCCh---hh-----hcCHHHHHHHHH--Hh
Confidence            69999999999999999999998 999999999998   321     1111111   11     122344555554  22


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHH-HHHHHHhHHHHHHhhhCCC
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRL-ELFRERTLPMLRAMDVETR  382 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl-~~f~~~~~~l~~~y~~~~~  382 (520)
                      ..+.+||+||+...          +..++.+|+|+|+.+.+.+   +|... ...+..+. ..+..  ..+.++|.....
T Consensus        63 ~~~~~vIidG~~~~----------l~~~~~vi~L~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~--~~~~~~~~~r~~  129 (180)
T PRK03839         63 FKEKNVVLDGHLSH----------LLPVDYVIVLRAHPKIIKERLKERGYS-KKKILENVEAELVD--VCLCEALEEKEK  129 (180)
T ss_pred             ccCCCEEEEecccc----------ccCCCEEEEEECCHHHHHHHHHHcCCC-HHHHHHHHHHHHHH--HHHHHHHHhcCC
Confidence            23567999998643          2246779999999976432   23211 12222211 11111  134466766777


Q ss_pred             EEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        383 LTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       383 l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      ++.||++ .++++|++.|...|.+
T Consensus       130 ~~~Id~~~~s~eev~~~I~~~l~~  153 (180)
T PRK03839        130 VIEVDTTGKTPEEVVEEILELIKS  153 (180)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHhc
Confidence            8999997 6999999998877754

>PLN02924 thymidylate kinase

Probab=99.47  E-value=1.2e-12  Score=128.47  Aligned_cols=176  Identities=13%  Similarity=0.178  Sum_probs=115.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH-HHHHHH-
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL-DIVYAE-  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~-~ll~~~-  300 (520)
                      ..++.|+|.|.+||||||||+.|++.+ ...++.+ .+++    +...++..|+.+++++..+..+...... -....| 
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l-~~~g~~v-~~~~----ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~   87 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFL-KGLGVAA-ELWR----FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRW   87 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCCc-eeee----CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999987 6665554 3444    3445788999999999766544332211 111112 


Q ss_pred             -----HhccccCCCcEEEEeCCCC-----------CHHHHHHHHhhcCCCCCEEEecCChhhhhcc-C-CCCCHHHHHHH
Q psy11031        301 -----MKKTKYTEADGIVIDGFPR-----------EMSQLIDFENKYQIHPPMILIDCSKLVLHKG-Q-IDNSVSAFRRR  362 (520)
Q Consensus       301 -----l~~~~~~~~~G~ILDGFPr-----------t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~-R-~dD~~e~~~~R  362 (520)
                           +.. ....+..+|+|+|.-           ..++...++..+..|+.+|+||++.+....+ + .++.   ++  
T Consensus        88 ~~~~~I~p-al~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~---~E--  161 (220)
T PLN02924         88 EKRSLMER-KLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGER---YE--  161 (220)
T ss_pred             HHHHHHHH-HHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccc---cc--
Confidence                 220 123467899999865           3455666666666788899999999865322 1 1111   11  


Q ss_pred             HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q psy11031        363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLE  411 (520)
Q Consensus       363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~  411 (520)
                      -..|.+........+.. ..+++|||+.++++|+++|...|...+.+.+
T Consensus       162 ~~~~~~rv~~~Y~~la~-~~~~vIDa~~sieeV~~~I~~~I~~~l~~~~  209 (220)
T PLN02924        162 KLEFQKKVAKRFQTLRD-SSWKIIDASQSIEEVEKKIREVVLDTVQRCL  209 (220)
T ss_pred             cHHHHHHHHHHHHHHhh-cCEEEECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            12444443333333332 4578899999999999999999988777443

>PRK13975 thymidylate kinase; Provisional

Probab=99.42  E-value=6.7e-12  Score=119.96  Aligned_cols=169  Identities=12%  Similarity=0.099  Sum_probs=104.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH----
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE----  300 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~----  300 (520)
                      +.+|+|.|++||||||+|+.|++++ +..+.           ..+.++..|+.+++++..+...+..+..-+...+    
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l-~~~~~-----------~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~   69 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKL-NAFWT-----------CEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHV   69 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-CCCee-----------ECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999997 64221           1234456788888887766333322221111222    


Q ss_pred             --HhccccCCCcEEEEeCCCCC-----------HHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCC-CCCHHHHHH
Q psy11031        301 --MKKTKYTEADGIVIDGFPRE-----------MSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQI-DNSVSAFRR  361 (520)
Q Consensus       301 --l~~~~~~~~~G~ILDGFPrt-----------~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~-dD~~e~~~~  361 (520)
                        +.  .......+|+|+|..+           ..+...+......|+.+|||+++.+.+.     |+|. .++.+.+++
T Consensus        70 ~~i~--~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~  147 (196)
T PRK13975         70 KEIE--EDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKK  147 (196)
T ss_pred             HHHH--HHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHH
Confidence              22  1112367999998643           1222233333345778999999987642     2222 223344445


Q ss_pred             HHHHHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHHHH
Q psy11031        362 RLELFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i~~  409 (520)
                      ..+.|.+...  ...|.....+++||++ .++++|+++|...|..++.+
T Consensus       148 ~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~  194 (196)
T PRK13975        148 VQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPD  194 (196)
T ss_pred             HHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCc
Confidence            5555555443  2233333457899996 89999999999999887754

>PRK08233 hypothetical protein; Provisional

Probab=99.40  E-value=4.8e-12  Score=119.05  Aligned_cols=167  Identities=10%  Similarity=0.139  Sum_probs=104.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      +.+|+|.|+|||||||+|+.|++.+ +..++...+.++   ...     ....+...+..|... +......+.+.+...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l-~~~~~~~~d~~~---~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~   72 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKL-KNSKALYFDRYD---FDN-----CPEDICKWIDKGANY-SEWVLTPLIKDIQEL   72 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhC-CCCceEEECCEE---ccc-----CchhhhhhhhccCCh-hhhhhHHHHHHHHHH
Confidence            5789999999999999999999997 644555555555   111     112334444444433 333444444445411


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cC--CCCCHHHHHHHHHHHHHHhHHHHHH-hh
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQ--IDNSVSAFRRRLELFRERTLPMLRA-MD  378 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R--~dD~~e~~~~Rl~~f~~~~~~l~~~-y~  378 (520)
                      .......|||.+||......+ +..   .++.+|||+++.+.+. |  .|  .+++.+.+.+++..|.....+.... +.
T Consensus        73 ~~~~~~~~vivd~~~~~~~~~-~~~---~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  148 (182)
T PRK08233         73 IAKSNVDYIIVDYPFAYLNSE-MRQ---FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALH  148 (182)
T ss_pred             HcCCCceEEEEeeehhhccHH-HHH---HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence            111223677766776533332 222   2578999999998632 2  12  2334456778888898887776432 22


Q ss_pred             h--CCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        379 V--ETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       379 ~--~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .  ....++||++.++++++++|...|..
T Consensus       149 ~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        149 TVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             cCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence            1  13457799999999999999988764

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.39  E-value=8.5e-12  Score=121.12  Aligned_cols=176  Identities=15%  Similarity=0.245  Sum_probs=111.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC-C-ccchHHHH-------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG-D-FVNRDVVL-------  294 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G-~-~vPd~lv~-------  294 (520)
                      +..+|+|.|..||||||+++.|++.+ .-..+   +.+-   ...+.++++|+.|++++.++ . .-|.....       
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l-~~~g~---~v~~---trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~   74 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERL-EERGI---KVVL---TREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRA   74 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH-HHcCC---eEEE---EeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999876 22222   1111   23457799999999999886 3 33332211       


Q ss_pred             HHHHHHHhccccCCCcEEEEeCCCC------------CHHHHHHHHhhcC---CCCCEEEecCChhhhh-c--cCCCCCH
Q psy11031        295 DIVYAEMKKTKYTEADGIVIDGFPR------------EMSQLIDFENKYQ---IHPPMILIDCSKLVLH-K--GQIDNSV  356 (520)
Q Consensus       295 ~ll~~~l~~~~~~~~~G~ILDGFPr------------t~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-r--~R~dD~~  356 (520)
                      +.+.+.+.- ....+.-+|+|+|-.            +.++...+++...   .|+.+|+||++++... |  .|... .
T Consensus        75 ~h~~~~i~p-al~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~-~  152 (208)
T COG0125          75 QHLEEVIKP-ALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL-R  152 (208)
T ss_pred             HHHHHHHHH-hhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc-c
Confidence            112222330 122357899999853            3556666666666   6888999999998632 2  22221 2


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhC--CCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMDVE--TRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~~~--~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      +.++..-..|++.+.....-+...  +.+++|||++++++|.+.|...|.+.+.
T Consensus       153 ~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~  206 (208)
T COG0125         153 DRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG  206 (208)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence            333333334444444333322222  2589999999999999999999887653

>PRK06217 hypothetical protein; Validated

Probab=99.38  E-value=1.1e-11  Score=117.92  Aligned_cols=154  Identities=9%  Similarity=0.137  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|+|+|||||||+|+.|++++ |+.|++++++++   ..  .+.+.+          ...|.+....++...+.   
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~---~~--~~~~~~----------~~~~~~~~~~~~~~~~~---   62 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFW---LP--TDPPFT----------TKRPPEERLRLLLEDLR---   62 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceee---cc--CCCCcc----------ccCCHHHHHHHHHHHHh---
Confidence            469999999999999999999997 999999999987   22  121111          12344555555555554   


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c-----cC---CCCCHHH----HHHHHHHHHH
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K-----GQ---IDNSVSA----FRRRLELFRE  368 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r-----~R---~dD~~e~----~~~Rl~~f~~  368 (520)
                        .+.+|||||++...  .+.   .....+.+|||++|.+.+.     |     ++   ...+.+.    +.++...|..
T Consensus        63 --~~~~~vi~G~~~~~--~~~---~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  135 (183)
T PRK06217         63 --PREGWVLSGSALGW--GDP---LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDT  135 (183)
T ss_pred             --cCCCEEEEccHHHH--HHH---HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccC
Confidence              34689999998653  222   2233677999999987531     1     11   1111222    3333333332


Q ss_pred             ------HhHHHHHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        369 ------RTLPMLRAMDV-ETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       369 ------~~~~l~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                            .......++.. ...++.+++..+++++.+.|...|..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        136 AGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             CCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence                  11122223332 24677889999999999988888753

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.38  E-value=2.9e-12  Score=130.70  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=104.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      +..|++.|+|||||||+|+.|++++.++.++|.+++.+    ........+..  .+...+...-.......+...+.  
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--   73 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ----SLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--   73 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH----HhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--
Confidence            46799999999999999999999965899999966544    22111111110  00001110001222333333333  


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhhcCC---CCCEEEecCChhhhh-----ccCCCCCHHHHH---HHHHHHHHHhHHH
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENKYQI---HPPMILIDCSKLVLH-----KGQIDNSVSAFR---RRLELFRERTLPM  373 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~---~Rl~~f~~~~~~l  373 (520)
                         .+.++|||+++.+..+.+.+......   ...+|+|+|+.+.+.     |++.....+.++   +|++.|...+.|+
T Consensus        74 ---~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~  150 (300)
T PHA02530         74 ---SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPV  150 (300)
T ss_pred             ---cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCce
Confidence               46789999999999998877654332   233789999887532     323344666666   8999999999999


Q ss_pred             HHHhhhCCCEEEEECCCCHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQ  394 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~  394 (520)
                      +..|..+..++.+|.+.++.+
T Consensus       151 ~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        151 YTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             eccCCCCCCEEEEECCCcCcC
Confidence            888877667888998888665

>PRK08118 topology modulation protein; Reviewed

Probab=99.31  E-value=1.3e-11  Score=116.15  Aligned_cols=89  Identities=19%  Similarity=0.301  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      ++|+|+|+|||||||+|+.|++++ +++++++++++.   ..   +             ...++++.+.++++..+.   
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~---~~---~-------------w~~~~~~~~~~~~~~~~~---   58 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW---KP---N-------------WEGVPKEEQITVQNELVK---   58 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc---cc---C-------------CcCCCHHHHHHHHHHHhc---
Confidence            479999999999999999999998 999999999987   21   1             123555656666655444   


Q ss_pred             cCCCcEEEEeC-CCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031        306 YTEADGIVIDG-FPREMSQLIDFENKYQIHPPMILIDCSKLV  346 (520)
Q Consensus       306 ~~~~~G~ILDG-FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~  346 (520)
                         ..+||||| |+++++..  +    ...+.+|+||+|...
T Consensus        59 ---~~~wVidG~~~~~~~~~--l----~~~d~vi~Ld~p~~~   91 (167)
T PRK08118         59 ---EDEWIIDGNYGGTMDIR--L----NAADTIIFLDIPRTI   91 (167)
T ss_pred             ---CCCEEEeCCcchHHHHH--H----HhCCEEEEEeCCHHH
Confidence               35799999 66665422  2    347889999999764

>PRK13949 shikimate kinase; Provisional

Probab=99.30  E-value=5.3e-11  Score=112.11  Aligned_cols=151  Identities=15%  Similarity=0.193  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      +|+|+|+|||||||+++.|++++ |+.+++++.++.   +..      +..+.+++ ..|+..-.++-.+++.+ +.   
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~i~---~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~---   68 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFFIE---NRF------HKTVGDIFAERGEAVFRELERNMLHE-VA---   68 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHHHH---HHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HH---
Confidence            69999999999999999999998 999999999987   332      22233333 34553333444444444 33   


Q ss_pred             cCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-------ccCCC---CCHHHHHHHHHHHHHHhHH
Q psy11031        306 YTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-------KGQID---NSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       306 ~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-------r~R~d---D~~e~~~~Rl~~f~~~~~~  372 (520)
                        ...+|||.   |+|.+.++.+.|.+.    ..||||+++.+.+.       +.|+.   .+.+.+.   +.+++....
T Consensus        69 --~~~~~vis~Ggg~~~~~~~~~~l~~~----~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~---~~i~~l~~~  139 (169)
T PRK13949         69 --EFEDVVISTGGGAPCFFDNMELMNAS----GTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELL---DFIIEALEK  139 (169)
T ss_pred             --hCCCEEEEcCCcccCCHHHHHHHHhC----CeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHH---HHHHHHHHH
Confidence              23467774   688888888888653    56899999987532       23432   1223332   233333344


Q ss_pred             HHHHhhhCCCEEEEECCC-CHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDT-QLPQVREEFERV  402 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~  402 (520)
                      ...+|+..+  ++||.+. +++++.+.|.+.
T Consensus       140 R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        140 RAPFYRQAK--IIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             HHHHHHhCC--EEEECCCCCHHHHHHHHHHh
Confidence            445676633  5678664 888888887654

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.29  E-value=6.5e-11  Score=113.03  Aligned_cols=166  Identities=13%  Similarity=0.212  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHH--------H
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVV--------L  294 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv--------~  294 (520)
                      .+.|+|.|++||||||+|++|++.+ +..-..   ++.   .....+++.|+.+++++..+..  +.+...        .
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l-~~~g~~---v~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~   75 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLL-QENGYD---VLF---TREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRH   75 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH-HHcCCe---EEE---EeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999986 331100   111   1123456778888887654332  221111        0


Q ss_pred             HHHHHHHhccccCCCcEEEEeCC----------CCC--HHHHHHHHhhcCC--CCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031        295 DIVYAEMKKTKYTEADGIVIDGF----------PRE--MSQLIDFENKYQI--HPPMILIDCSKLVLH-K--GQIDNSVS  357 (520)
Q Consensus       295 ~ll~~~l~~~~~~~~~G~ILDGF----------Prt--~~Qae~l~~~~~~--p~~VI~Ld~~~~~~~-r--~R~dD~~e  357 (520)
                      ..+.+.+.. ....+.-+|+|+|          +++  .++...+...+..  |+.+|+|+++.+... |  .|.....+
T Consensus        76 ~~~~~~i~~-~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~  154 (195)
T TIGR00041        76 EHLEDKIKP-ALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDRE  154 (195)
T ss_pred             HHHHHHHHH-HHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchH
Confidence            122222220 1123456889965          332  2344556555544  788999999998642 2  23221222


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031        358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF  399 (520)
Q Consensus       358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I  399 (520)
                      ... ..+.+........+.++....+++||++.++++|+++|
T Consensus       155 ~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       155 EFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence            222 22223333333344444345688999999999998764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13976 thymidylate kinase; Provisional

Probab=99.28  E-value=1.6e-10  Score=112.55  Aligned_cols=175  Identities=13%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCC---CeeeehhhHHhhhhcccccCCcchHHHHhhhhcC-CccchHHHHHHHHHH-
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPN---WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG-DFVNRDVVLDIVYAE-  300 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g---~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G-~~vPd~lv~~ll~~~-  300 (520)
                      ..|+|.|..|||||||++.|++.+..   ...+.   +     .....++..|+.|++++... ..-|.....-.+..| 
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~---~-----~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~   72 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV---L-----TREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRR   72 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceE---E-----eeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHH
Confidence            36999999999999999999987611   11111   1     22346788999999988642 233332221111121 


Q ss_pred             ------HhccccCCCcEEEEeCCCC------------CHHHHHHHHhhc--CCCCCEEEecCChhhhhccCCCCCHHHHH
Q psy11031        301 ------MKKTKYTEADGIVIDGFPR------------EMSQLIDFENKY--QIHPPMILIDCSKLVLHKGQIDNSVSAFR  360 (520)
Q Consensus       301 ------l~~~~~~~~~G~ILDGFPr------------t~~Qae~l~~~~--~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~  360 (520)
                            +.. ....++.+|.|+|.-            ..++...++...  ..|+.+|+|+++.+...++...+.   ++
T Consensus        73 ~~~~~~I~p-~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~---~e  148 (209)
T PRK13976         73 EHFVKVILP-ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNG---YE  148 (209)
T ss_pred             HHHHHHHHH-HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccc---hh
Confidence                  220 123467799999853            334555555433  257889999999987543222221   22


Q ss_pred             HHHHHHHHHhHHHHHHh-hh-CCCEEEEEC---CCC---HHHHHHHHHHHHHHHHHHHHh
Q psy11031        361 RRLELFRERTLPMLRAM-DV-ETRLTIVDG---DTQ---LPQVREEFERVLKKIIDDLEN  412 (520)
Q Consensus       361 ~Rl~~f~~~~~~l~~~y-~~-~~~l~~IDa---~~~---~e~V~~~I~~~I~~~i~~~~~  412 (520)
                      .+-..|.+........+ .. .+.++.||+   +++   +++|+++|...|...+.++++
T Consensus       149 ~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~~~  208 (209)
T PRK13976        149 FMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDKLK  208 (209)
T ss_pred             cccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence            22234444444333333 22 235788998   445   999999999999998877653

>KOG3327|consensus

Probab=99.25  E-value=6.2e-11  Score=110.97  Aligned_cols=169  Identities=12%  Similarity=0.246  Sum_probs=120.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH-------
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD-------  295 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~-------  295 (520)
                      .+...|++.|-.+|||||||.+|.++.  +..+....+++    .....+++|+.|..++.+...+|+.++.-       
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l--~~~~~~~~l~~----FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRw   76 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESL--IPGLDPAELLR----FPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRW   76 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHH--HhccChHHhhh----cchhcccccHHHHHHHHhccCCcHHHHHHHhccchh
Confidence            356789999999999999999999986  23333334554    55667899999999999888899876643       


Q ss_pred             ----HHHHHHhccccCCCcEEEEeCCC-----------CCHHHHHHHHhhcCCCCCEEEecCChhhhhc--cCCCC--CH
Q psy11031        296 ----IVYAEMKKTKYTEADGIVIDGFP-----------REMSQLIDFENKYQIHPPMILIDCSKLVLHK--GQIDN--SV  356 (520)
Q Consensus       296 ----ll~~~l~~~~~~~~~G~ILDGFP-----------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r--~R~dD--~~  356 (520)
                          +|++.+.     .+..+|+|+|-           .+.+|+..-+..+..|+.|+||+++++.+.+  ++.+.  ..
T Consensus        77 e~~~~i~e~l~-----kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~  151 (208)
T KOG3327|consen   77 EHVSLIKEKLA-----KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYET  151 (208)
T ss_pred             hHHHHHHHHHh-----cCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHH
Confidence                3344444     46679999984           3467888888888889999999999987543  22222  22


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhh-hCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMD-VETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~-~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      ..++++...|.+...      + +.-.+++|||+.+.++|.+.|.+++++.+.
T Consensus       152 v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~  198 (208)
T KOG3327|consen  152 VAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS  198 (208)
T ss_pred             HHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence            234444443333322      2 224689999999999999999988887653

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.24  E-value=1.5e-10  Score=111.14  Aligned_cols=170  Identities=14%  Similarity=0.191  Sum_probs=98.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc--CCccchHHHHHHHHHH--
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA--GDFVNRDVVLDIVYAE--  300 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~--G~~vPd~lv~~ll~~~--  300 (520)
                      +.+|+|.|++||||||+|+.|++++ +-...  ...+.   .+. .++..|+.++..+..  ....+.....-.+..+  
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l-~~~~~--~~~~~---~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL-EQQGR--DVVFT---REP-GGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH-HHcCC--ceeEe---eCC-CCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999875 22111  11111   222 356678888888863  3333333222112222  


Q ss_pred             -----HhccccCCCcEEEEeCCCCC------------HHHHHHHHhhc---CCCCCEEEecCChhhhh-c--cCCC-CCH
Q psy11031        301 -----MKKTKYTEADGIVIDGFPRE------------MSQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQID-NSV  356 (520)
Q Consensus       301 -----l~~~~~~~~~G~ILDGFPrt------------~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R~d-D~~  356 (520)
                           +.. ....+..+|+|+|+-+            .++...+...+   ..|+.+|+|+++++.+. |  .|.. +..
T Consensus        76 ~~~~~i~~-~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~  154 (205)
T PRK00698         76 HLEEVIKP-ALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRI  154 (205)
T ss_pred             HHHHHHHH-HHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence                 220 1123568999987533            33445555444   45778999999997642 1  2321 111


Q ss_pred             ----HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        357 ----SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       357 ----e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                          ..+.+|+..++   ..+.+.+  ...+++||++.++++|+++|...|...+
T Consensus       155 ~~~~~~~~~~~~~~y---~~~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~~  204 (205)
T PRK00698        155 EQEGLDFFERVREGY---LELAEKE--PERIVVIDASQSLEEVHEDILAVIKAWL  204 (205)
T ss_pred             hhhhHHHHHHHHHHH---HHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence                12222222211   1222222  2357889999999999999998887653

>PRK13974 thymidylate kinase; Provisional

Probab=99.22  E-value=1.3e-10  Score=113.32  Aligned_cols=140  Identities=9%  Similarity=0.062  Sum_probs=106.8

Q ss_pred             CcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHH--HHH---Hh---cCCCCCc-EEE-----------eCCCCCHHh--
Q psy11031         14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL--MLE---MK---MSPAAKA-FLI-----------SGYPRNMRD--   71 (520)
Q Consensus        14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll--~~~---l~---~~~~~~G-~IL-----------DGFPRt~~Q--   71 (520)
                      .|..+.+|+.+++++....  |..+||.++..++  .+|   +.   .+...+| +||           |||||+..+  
T Consensus        44 ~p~~~~~g~~ir~~l~~~~--~~~~~~~~~~~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~  121 (212)
T PRK13974         44 EPGGTLLGKSLRELLLDTS--KDNSPSPLAELLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLEL  121 (212)
T ss_pred             CCCCCchHHHHHHHHcCCC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHH
Confidence            4556789999999997322  3378998887777  333   11   1112344 888           999998776  


Q ss_pred             HHHHHH---hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHH
Q psy11031         72 VVEYSD---KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVE  148 (520)
Q Consensus        72 A~~~~~---~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ee  148 (520)
                      +..+..   .+..||+||+|+||.+++.+|+..     |.+ +.+.+|...|++.+.++..+|.+++.+++|||++++++
T Consensus       122 ~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~-----R~d-D~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~ee  195 (212)
T PRK13974        122 IKNLESIATQGLSPDLTFFLEISVEESIRRRKN-----RKP-DRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIET  195 (212)
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHh-----ccc-CchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHH
Confidence            333332   234799999999999999999842     211 24567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11031        149 VYADFRTAVLKIL  161 (520)
Q Consensus       149 V~~~i~~~l~~~~  161 (520)
                      |+++|.++|...+
T Consensus       196 V~~~I~~~l~~~~  208 (212)
T PRK13974        196 ISNEIKETLLNNF  208 (212)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998755

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.18  E-value=2.4e-10  Score=108.53  Aligned_cols=159  Identities=11%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             EEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC-ccchHHHHHHHHH-------HH
Q psy11031        230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD-FVNRDVVLDIVYA-------EM  301 (520)
Q Consensus       230 vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~-~vPd~lv~~ll~~-------~l  301 (520)
                      |.|..|||||||+++|++++ .-..+.   .+.   .....+++.|..+++++..+. .-|.....-....       .+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l-~~~~~~---~~~---~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I   73 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEAL-KEKGYK---VII---TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVI   73 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHH-HHTTEE---EEE---EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCCCCCCHHHHHHHHHHHH-HHcCCc---ccc---cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999876 222222   111   234567889999999998333 3332222111111       12


Q ss_pred             hccccCCCcEEEEeCCC------------CCHHHHHHHHhhcC--CCCCEEEecCChhhhhc---cCCC--CCHHHHHHH
Q psy11031        302 KKTKYTEADGIVIDGFP------------REMSQLIDFENKYQ--IHPPMILIDCSKLVLHK---GQID--NSVSAFRRR  362 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~~~--~p~~VI~Ld~~~~~~~r---~R~d--D~~e~~~~R  362 (520)
                      .. ....+..+|+|+|-            -+.++...+...+.  .|+.+|||+++++...+   .|..  +........
T Consensus        74 ~~-~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~  152 (186)
T PF02223_consen   74 RP-ALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEY  152 (186)
T ss_dssp             HH-HHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHH
T ss_pred             HH-HHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHH
Confidence            20 12246789999882            23566666666655  78889999999986421   2222  222222222


Q ss_pred             HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031        363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF  399 (520)
Q Consensus       363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I  399 (520)
                      +..+++....+   ++..+.+++|||+.++++|+++|
T Consensus       153 ~~~~~~~y~~l---~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  153 LRRVREAYLEL---AKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHHHHHHHHH---HHTTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHHHHHHHHH---HcCCCCEEEEECCCCHHHHHhhC
Confidence            33333333333   33456799999999999999876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.13  E-value=2.6e-09  Score=101.35  Aligned_cols=167  Identities=14%  Similarity=0.152  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC---ccchHHHH------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD---FVNRDVVL------  294 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~---~vPd~lv~------  294 (520)
                      ++|+|.|++||||||++++|++.+.  |+.++.+.        . ...+..|+.++.++..+.   ..+.....      
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   71 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR--------E-PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADR   71 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--------C-CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHH
Confidence            3699999999999999999998751  34444331        1 223456777777776542   22221111      


Q ss_pred             -HHHHHHHhccccCCCcEEEEeCCCCC------------HHHHHHHHh---hcCCCCCEEEecCChhhhhc---cCCCCC
Q psy11031        295 -DIVYAEMKKTKYTEADGIVIDGFPRE------------MSQLIDFEN---KYQIHPPMILIDCSKLVLHK---GQIDNS  355 (520)
Q Consensus       295 -~ll~~~l~~~~~~~~~G~ILDGFPrt------------~~Qae~l~~---~~~~p~~VI~Ld~~~~~~~r---~R~dD~  355 (520)
                       ..+.+.+.. ....+..+|+|+|+-+            ..+...+..   ....|+.+|+|+++.+.+.+   .|....
T Consensus        72 ~~~~~~~~~~-~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~  150 (200)
T cd01672          72 AQHVEEVIKP-ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD  150 (200)
T ss_pred             HHHHHHHHHH-HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence             111111220 1224678999987632            223333332   23356779999999976421   232221


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhh--CCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDV--ETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~--~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      ..  ......|.+........+..  ...++.||++.+++++++.|...|.
T Consensus       151 ~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         151 RD--EQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             hh--hhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            11  11122233222222221111  1357899999999999999988764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK07933 thymidylate kinase; Validated

Probab=99.09  E-value=1.1e-09  Score=107.04  Aligned_cols=168  Identities=11%  Similarity=0.161  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcC--Cc--cchHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAG--DF--VNRDVVLDIVY  298 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G--~~--vPd~lv~~ll~  298 (520)
                      +.|+|.|+.|||||||+++|++.+.  |...+-+    +    +.. .+++.|+.+++++...  ..  -|.....-...
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a   72 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----A----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFAL   72 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----e----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhh
Confidence            3699999999999999999998751  2222111    1    211 3466788888877632  22  12211111111


Q ss_pred             H------HHhccccCCCcEEEEeCCCCCH-----------------HHHHHHHhh---cCCCCCEEEecCChhhhh-c--
Q psy11031        299 A------EMKKTKYTEADGIVIDGFPREM-----------------SQLIDFENK---YQIHPPMILIDCSKLVLH-K--  349 (520)
Q Consensus       299 ~------~l~~~~~~~~~G~ILDGFPrt~-----------------~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--  349 (520)
                      +      .|.. ....++.+|+|+|.-+-                 .+...++..   ...|+.+|+||++++... |  
T Consensus        73 ~R~~~~~~I~p-~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~  151 (213)
T PRK07933         73 DRAGARDELAG-LLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR  151 (213)
T ss_pred             hhhhhHHHHHH-HHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence            1      1220 12245678999985432                 233334431   235788999999998642 1  


Q ss_pred             cCCCC----CHHHHHHHHHHHHHHhHHHHHH-hhh--CCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        350 GQIDN----SVSAFRRRLELFRERTLPMLRA-MDV--ETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       350 ~R~dD----~~e~~~~Rl~~f~~~~~~l~~~-y~~--~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      .|...    ..+.++.. ..|.+........ .+.  ...+++|||++++++|++.|...|
T Consensus       152 ~R~~~~~~~~~d~~E~~-~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        152 RRAAQDADRARDAYERD-DGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             hhccccCCccccccccc-HHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            22210    11222222 2444444433322 222  236888999999999999998766

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.09  E-value=2.7e-09  Score=99.95  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ..|+|+|.+||||||+|+.|++++ |+.+++.+.++.   ...  +    ..+.+++. .|    .+...+.-...+.  
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l-g~~~~d~D~~~~---~~~--g----~~~~~~~~~~g----~~~~~~~e~~~~~--   66 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL-GYRFVDTDQWLQ---STS--N----MTVAEIVEREG----WAGFRARESAALE--   66 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEccHHHH---HHh--C----CCHHHHHHHHC----HHHHHHHHHHHHH--
Confidence            469999999999999999999997 999999988877   321  2    22223222 22    2323333223333  


Q ss_pred             ccCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCC------CCHHHHHHHHHHHHHHhHH
Q psy11031        305 KYTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQID------NSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       305 ~~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~d------D~~e~~~~Rl~~f~~~~~~  372 (520)
                      ... ..++||. |  ++......+.+..    ...+|||+++.+.+. |  .|..      -....+...+..+.+..  
T Consensus        67 ~~~-~~~~vi~~ggg~vl~~~~~~~l~~----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r--  139 (171)
T PRK03731         67 AVT-APSTVIATGGGIILTEENRHFMRN----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAER--  139 (171)
T ss_pred             Hhc-CCCeEEECCCCccCCHHHHHHHHh----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHH--
Confidence            221 2344554 3  5656555555543    346999999997642 1  1211      00111222233333222  


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                       ..+|.... .++||+++++++|++.|.+.|.
T Consensus       140 -~~~y~~~a-~~~Id~~~~~e~v~~~i~~~l~  169 (171)
T PRK03731        140 -EALYREVA-HHIIDATQPPSQVVSEILSALA  169 (171)
T ss_pred             -HHHHHHhC-CEEEcCCCCHHHHHHHHHHHHh
Confidence             23443322 3789999999999999988774

>smart00072 GuKc Guanylate kinase homologues

Probab=99.09  E-value=8.2e-10  Score=105.15  Aligned_cols=161  Identities=17%  Similarity=0.270  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHHhhhhcccccCCcch----HHHHhhhhcCCccchHHHH----
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLLRYFANIEDDGEGLN----SRIKSSVSAGDFVNRDVVL----  294 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLlr~~~~~~~~~t~~g----~~i~~~l~~G~~vPd~lv~----  294 (520)
                      ..|+|+||+||||+|+++.|.+.++   ++.+..+..-.|   .....|....    +.+...+++|++++...+.    
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r---~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~Y   79 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPR---PGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYY   79 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCC---CCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCc
Confidence            4699999999999999999999853   445555555555   3333344433    6777888888877753332    


Q ss_pred             ----HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hhh---ccCCCCCHHHHHHHHHHH
Q psy11031        295 ----DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VLH---KGQIDNSVSAFRRRLELF  366 (520)
Q Consensus       295 ----~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~~---r~R~dD~~e~~~~Rl~~f  366 (520)
                          +.+...+.     .++.+|+|+.|+...++...    ...+.+||+.++.. .+.   +.|.+++.+.+++|+...
T Consensus        80 Gt~~~~i~~~~~-----~~~~~ild~~~~~~~~l~~~----~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a  150 (184)
T smart00072       80 GTSKETIRQVAE-----QGKHCLLDIDPQGVKQLRKA----QLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAA  150 (184)
T ss_pred             ccCHHHHHHHHH-----cCCeEEEEECHHHHHHHHHh----CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence                24555555     46899999998888887653    23456899986553 332   357788899999999965


Q ss_pred             HHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        367 RERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       367 ~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .+..    ..|.. -. .+|+.+ +.++.++++.+.|..
T Consensus       151 ~~~~----~~~~~-fd-~~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      151 QKEA----QEYHL-FD-YVIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHH----hhhcc-CC-EEEECc-CHHHHHHHHHHHHHh
Confidence            4432    22311 11 345555 788888888877754

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK04040 adenylate kinase; Provisional

Probab=99.06  E-value=4.6e-09  Score=100.69  Aligned_cols=167  Identities=14%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccc-cCC-cchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIED-DGE-GLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~-~~t-~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      +++|+|.|.|||||||+|+.|++++. ++.+++.|++++   +... .+- .....++..    ......-+..+...++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~---~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i   74 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVML---EVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERI   74 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHH---HHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHH
Confidence            57899999999999999999999964 799999999998   3322 221 111222221    0001112223344444


Q ss_pred             hccccCCCcEEEEeCCC--CCHH------HHHHHHhhcCCCCCEEEecCChhhhh--------ccCCCCCHHHHHHHHHH
Q psy11031        302 KKTKYTEADGIVIDGFP--REMS------QLIDFENKYQIHPPMILIDCSKLVLH--------KGQIDNSVSAFRRRLEL  365 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFP--rt~~------Qae~l~~~~~~p~~VI~Ld~~~~~~~--------r~R~dD~~e~~~~Rl~~  365 (520)
                      .  .......+||||..  ++..      ....+...  .|+.+|+|++++....        |.|..++.+.++.+++.
T Consensus        75 ~--~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l--~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~  150 (188)
T PRK04040         75 A--EMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEEL--NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEM  150 (188)
T ss_pred             H--HhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhc--CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHH
Confidence            4  22334458999832  1111      23334332  5678999999886532        33556678888877765


Q ss_pred             HHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        366 FRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       366 f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      -+..... ..+|...-.++.+|-+...++-.++|...|
T Consensus       151 a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        151 NRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            4433221 122222223344454444888888877665

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.03  E-value=4.7e-09  Score=101.15  Aligned_cols=159  Identities=15%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---------------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---------------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---------------  290 (520)
                      .+|.|+|++||||||+|+.|+++| |+.+++++++.+   +....+++.+..+.+.+..+-+.++               
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~---~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~   77 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAR---EALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFN   77 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHH---HHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhC
Confidence            369999999999999999999997 999999999999   6666777777777776643221111               


Q ss_pred             ---------HHHHHHH----HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCC
Q psy11031        291 ---------DVVLDIV----YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQID  353 (520)
Q Consensus       291 ---------~lv~~ll----~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~d  353 (520)
                               +++..++    .+++.  ......-+|+|- |--      ++..+ ...+.+++++||.+.+. |  .|..
T Consensus        78 d~~~~~~l~~i~hP~i~~~~~~~~~--~~~~~~~vv~e~-pll------~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g  148 (195)
T PRK14730         78 DPEERRWLENLIHPYVRERFEEELA--QLKSNPIVVLVI-PLL------FEAKLTDLCSEIWVVDCSPEQQLQRLIKRDG  148 (195)
T ss_pred             CHHHHHHHHHHHhHHHHHHHHHHHH--hcCCCCEEEEEe-HHh------cCcchHhCCCEEEEEECCHHHHHHHHHHcCC
Confidence                     1122222    22333  111123344443 211      12111 13567999999998642 2  3444


Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       354 D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      -+.+.+.+|+...   . +....-. ... ++|+.+.+.+++.+++...+
T Consensus       149 ~s~e~~~~ri~~Q---~-~~~~k~~-~aD-~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        149 LTEEEAEARINAQ---W-PLEEKVK-LAD-VVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             CCHHHHHHHHHhC---C-CHHHHHh-hCC-EEEECCCCHHHHHHHHHHHH
Confidence            5677788887642   1 2222211 122 46899999999999988765

>PRK04182 cytidylate kinase; Provisional

Probab=99.03  E-value=5e-09  Score=98.21  Aligned_cols=160  Identities=12%  Similarity=0.120  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      +|+|.|.|||||||+|+.|++++ |+.+++++++++   .... .+..    +..+...++..|.  +...+...+.  .
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l-g~~~id~~~~~~---~~~~~~g~~----~~~~~~~~~~~~~--~~~~~~~~~~--~   69 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL-GLKHVSAGEIFR---ELAKERGMS----LEEFNKYAEEDPE--IDKEIDRRQL--E   69 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-CCcEecHHHHHH---HHHHHcCCC----HHHHHHHhhcCch--HHHHHHHHHH--H
Confidence            69999999999999999999997 999999999998   3321 1211    2222222332221  2222233333  2


Q ss_pred             cC-CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHHHHHHHh-HHHHHHhhh-
Q psy11031        306 YT-EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLELFRERT-LPMLRAMDV-  379 (520)
Q Consensus       306 ~~-~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~~f~~~~-~~l~~~y~~-  379 (520)
                      .. ...+||+||--..     .+..  ..+..+|+|+||.+.+. |  .|..-..+...+.+..-.... .-...+|.. 
T Consensus        70 ~~~~~~~~Vi~g~~~~-----~~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~  142 (180)
T PRK04182         70 IAEKEDNVVLEGRLAG-----WMAK--DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGID  142 (180)
T ss_pred             HHhcCCCEEEEEeecc-----eEec--CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            22 4567999983111     0111  11456899999987642 2  222222222222221111111 112233321 


Q ss_pred             ----CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        380 ----ETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       380 ----~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                          ...-++||.+ .+++++.+.|...+..
T Consensus       143 ~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~  173 (180)
T PRK04182        143 IDDLSIYDLVINTSRWDPEGVFDIILTAIDK  173 (180)
T ss_pred             ccccccccEEEECCCCCHHHHHHHHHHHHHH
Confidence                1122578865 5899998888887754

>PRK13947 shikimate kinase; Provisional

Probab=99.01  E-value=9.3e-09  Score=96.07  Aligned_cols=150  Identities=15%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .|+|+|+|||||||+|+.|++++ |+.+++.+.+++   ...      |..+.+++. .|+..-.+...++++ .+.   
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~l-g~~~id~d~~~~---~~~------g~~~~~~~~~~ge~~~~~~e~~~~~-~l~---   68 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTL-SFGFIDTDKEIE---KMT------GMTVAEIFEKDGEVRFRSEEKLLVK-KLA---   68 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh-CCCEEECchhhh---hhc------CCcHHHHHHHhChHHHHHHHHHHHH-HHh---
Confidence            59999999999999999999997 999999999887   331      222333332 233111122222222 222   


Q ss_pred             cCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-----cCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031        306 YTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-----GQIDNSVSAFRRRLELFRERTLPMLRA  376 (520)
Q Consensus       306 ~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-----~R~dD~~e~~~~Rl~~f~~~~~~l~~~  376 (520)
                        ...++||.   |++.+......|.+.    ..+|||+++.+.+. |     .|+.-....+..++....+...   .+
T Consensus        69 --~~~~~vi~~g~g~vl~~~~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~---~~  139 (171)
T PRK13947         69 --RLKNLVIATGGGVVLNPENVVQLRKN----GVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKERE---PF  139 (171)
T ss_pred             --hcCCeEEECCCCCcCCHHHHHHHHhC----CEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH---HH
Confidence              12233332   245555666666543    35999999987542 1     2211111122333332222222   34


Q ss_pred             hhhCCCEEEEE-CCCCHHHHHHHHHH
Q psy11031        377 MDVETRLTIVD-GDTQLPQVREEFER  401 (520)
Q Consensus       377 y~~~~~l~~ID-a~~~~e~V~~~I~~  401 (520)
                      |...+ + .|| ++.+++++.+.|..
T Consensus       140 y~~ad-~-~Idt~~~~~~~i~~~I~~  163 (171)
T PRK13947        140 YDFAD-Y-TIDTGDMTIDEVAEEIIK  163 (171)
T ss_pred             HHhcC-E-EEECCCCCHHHHHHHHHH
Confidence            54322 4 455 67899999998887

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.98  E-value=1.1e-08  Score=98.44  Aligned_cols=161  Identities=16%  Similarity=0.214  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc-----cch----------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF-----VNR----------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~-----vPd----------  290 (520)
                      .+|.|+|++||||||+|+.|++ + |+.+++++++.+   +....+++....+.+.+..+..     +.-          
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~---~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~   77 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAH---EVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD   77 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHH---HHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence            5799999999999999999998 7 999999999999   6665666666666665532211     111          


Q ss_pred             --------HHHHHHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh---ccCCCCCH
Q psy11031        291 --------DVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH---KGQIDNSV  356 (520)
Q Consensus       291 --------~lv~~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~---r~R~dD~~  356 (520)
                              .++...+..++...  ......-+|+|.= .      .++..+ ..++.|++++||.+.+.   ..|...+.
T Consensus        78 ~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-l------l~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~  150 (194)
T PRK00081         78 PEARKKLEAILHPLIREEILEQLQEAESSPYVVLDIP-L------LFENGLEKLVDRVLVVDAPPETQLERLMARDGLSE  150 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-H------hhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence                    12222222333210  1111234566652 1      122221 23578999999998642   23545677


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      +.+..|+..+..    ..+.-...+  ++|+.+.+++++.+++...+.
T Consensus       151 e~~~~ri~~Q~~----~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~  192 (194)
T PRK00081        151 EEAEAIIASQMP----REEKLARAD--DVIDNNGDLEELRKQVERLLQ  192 (194)
T ss_pred             HHHHHHHHHhCC----HHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence            888888875432    222211122  568999999999998887764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.93  E-value=1.8e-08  Score=93.73  Aligned_cols=160  Identities=13%  Similarity=0.143  Sum_probs=85.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+..|+|+|+|||||||+|+.|++++ |+.+++.+++++   ...  +..+...+.   ..|...-.+...+++...+. 
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~d~~~~---~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~l~~-   72 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTDHLIE---ARA--GKSIPEIFE---EEGEAAFRELEEEVLAELLA-   72 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEChHHHH---HHc--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHh-
Confidence            46789999999999999999999997 999999998887   322  222222211   12331112223333333222 


Q ss_pred             cccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--c---CCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        304 TKYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--G---QIDNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       304 ~~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~---R~dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                          ....+|..|  +.-.......|.    ....+|||+|+.+.+. |  .   |.-...+....++..+.....+.  
T Consensus        73 ----~~~~vi~~g~~~~~~~~~r~~l~----~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--  142 (175)
T PRK00131         73 ----RHNLVISTGGGAVLREENRALLR----ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPL--  142 (175)
T ss_pred             ----cCCCEEEeCCCEeecHHHHHHHH----hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH--
Confidence                112344434  222222333332    2346899999997642 1  1   11000011112233333332232  


Q ss_pred             HhhhCCCEEEEE-CCCCHHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVD-GDTQLPQVREEFERVLKK  405 (520)
Q Consensus       376 ~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~~  405 (520)
                       |..... ++|| .+.+++++.+.|.+.|..
T Consensus       143 -~~~~~d-l~idt~~~~~~e~~~~I~~~v~~  171 (175)
T PRK00131        143 -YEEVAD-ITVETDGRSPEEVVNEILEKLEA  171 (175)
T ss_pred             -HHhhcC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence             322112 3577 568899999988888753

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.93  E-value=2.1e-08  Score=94.14  Aligned_cols=158  Identities=16%  Similarity=0.158  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      +.|+++|++||||||+.+.||+.+ ++..++++.++.   +.      .|..|.+++. .|+    +-..++=...+.+ 
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie---~~------~g~sI~eIF~~~GE----~~FR~~E~~vl~~-   67 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIE---KR------TGMSIAEIFEEEGE----EGFRRLETEVLKE-   67 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHc-CCCcccchHHHH---HH------HCcCHHHHHHHHhH----HHHHHHHHHHHHH-
Confidence            469999999999999999999997 999999999998   22      3455666664 355    3333332222221 


Q ss_pred             ccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc------cCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031        305 KYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLHK------GQIDNSVSAFRRRLELFRERTLPMLRA  376 (520)
Q Consensus       305 ~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r------~R~dD~~e~~~~Rl~~f~~~~~~l~~~  376 (520)
                      -......+|-.|  ...+.+....|...    ..||||+++.+.+.+      .|+--..+.-.+.++...+...++   
T Consensus        68 l~~~~~~ViaTGGG~v~~~enr~~l~~~----g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~---  140 (172)
T COG0703          68 LLEEDNAVIATGGGAVLSEENRNLLKKR----GIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPL---  140 (172)
T ss_pred             HhhcCCeEEECCCccccCHHHHHHHHhC----CeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHH---
Confidence            111223444443  66666666666654    369999999986431      232111111123344444343444   


Q ss_pred             hhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        377 MDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       377 y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      |++.. .++++++...+.+.++|...|...
T Consensus       141 Y~e~a-~~~~~~~~~~~~v~~~i~~~l~~~  169 (172)
T COG0703         141 YREVA-DFIIDTDDRSEEVVEEILEALEGS  169 (172)
T ss_pred             HHHhC-cEEecCCCCcHHHHHHHHHHHHHh
Confidence            54422 457888877788888888777653

>PRK13948 shikimate kinase; Provisional

Probab=98.92  E-value=1.9e-08  Score=95.94  Aligned_cols=160  Identities=14%  Similarity=0.072  Sum_probs=95.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l  301 (520)
                      ..+..|+|+|.+||||||+++.|++++ |+.+++++.+++   +.      .|..+.+++. .|+    ....++-...+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~l-g~~~iD~D~~ie---~~------~g~si~~if~~~Ge----~~fR~~E~~~l   73 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRAL-MLHFIDTDRYIE---RV------TGKSIPEIFRHLGE----AYFRRCEAEVV   73 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEECCHHHH---HH------HhCCHHHHHHHhCH----HHHHHHHHHHH
Confidence            356789999999999999999999997 999999998887   32      2333444442 343    33333333333


Q ss_pred             hccccCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc-----cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        302 KKTKYTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK-----GQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       302 ~~~~~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r-----~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      .  ......+.||.   |.+-..+....|.+    ...||||+++.+.+.+     .|+--....-..++....+.   -
T Consensus        74 ~--~l~~~~~~VIa~GgG~v~~~~n~~~l~~----~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~---R  144 (182)
T PRK13948         74 R--RLTRLDYAVISLGGGTFMHEENRRKLLS----RGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNE---R  144 (182)
T ss_pred             H--HHHhcCCeEEECCCcEEcCHHHHHHHHc----CCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHH---H
Confidence            3  11112345555   56666555555554    3468999999875421     23211100011233333333   3


Q ss_pred             HHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGD-TQLPQVREEFERVLKKII  407 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i  407 (520)
                      ..+|...  -++||.+ .+++++.+.|...|...+
T Consensus       145 ~~~Y~~a--~~~i~t~~~~~~ei~~~i~~~l~~~~  177 (182)
T PRK13948        145 EPVYRQA--TIHVSTDGRRSEEVVEEIVEKLWAWA  177 (182)
T ss_pred             HHHHHhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            3456432  2457765 689999999988887643

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.90  E-value=5.3e-08  Score=90.56  Aligned_cols=157  Identities=12%  Similarity=0.129  Sum_probs=88.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      +|+|.|++||||||+|+.|++++ |+.+++.+++++   +... .+.... .+......   -|  .+...+...+.  .
T Consensus         2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~---~~~~~~g~~~~-~~~~~~~~---~~--~~~~~~~~~i~--~   69 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFR---ELAAKMGLDLI-EFLNYAEE---NP--EIDKKIDRRIH--E   69 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHH---HHHHHcCCCHH-HHHHHHhc---Cc--HHHHHHHHHHH--H
Confidence            69999999999999999999997 999999999988   3221 111111 11111111   11  12333333343  2


Q ss_pred             cC-CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHH-HHHHhhh-
Q psy11031        306 YT-EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLP-MLRAMDV-  379 (520)
Q Consensus       306 ~~-~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~-l~~~y~~-  379 (520)
                      .. ...+||+||.-...    .+   ...++.+|+++||.+.+.+   .|...+.+...+++..-...... ...+|.. 
T Consensus        70 ~~~~~~~~Vi~g~~~~~----~~---~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~  142 (171)
T TIGR02173        70 IALKEKNVVLESRLAGW----IV---REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGID  142 (171)
T ss_pred             HHhcCCCEEEEecccce----ee---cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            22 35689999953221    01   1224578999999986431   34334455555544433222222 2234432 


Q ss_pred             ----CCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031        380 ----ETRLTIVDGD-TQLPQVREEFERVL  403 (520)
Q Consensus       380 ----~~~l~~IDa~-~~~e~V~~~I~~~I  403 (520)
                          ...=+.||.+ .++++ .+.|...+
T Consensus       143 ~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       143 IDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             ccccccccEEEECCCCCHHH-HHHHHHHh
Confidence                1222678866 67887 77776554

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.90  E-value=2e-08  Score=92.64  Aligned_cols=159  Identities=12%  Similarity=0.134  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|.|-|+|||||||+|+.||++| |+.|+|.|.++|+.++      +.|.-+.++-.-++.-|+  +...+..+..  ..
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~A~------e~gmsl~ef~~~AE~~p~--iD~~iD~rq~--e~   70 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREMAR------ERGMSLEEFSRYAEEDPE--IDKEIDRRQK--EL   70 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHh-CCceeeccHHHHHHHH------HcCCCHHHHHHHHhcCch--hhHHHHHHHH--HH
Confidence            68999999999999999999998 9999999999994322      233344444433333332  2222333333  22


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhc--CCCCCEEEecCChhhhhc---cCCC-CCHHHHHHHHHHHHHHhHHHHHHhhh-
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKY--QIHPPMILIDCSKLVLHK---GQID-NSVSAFRRRLELFRERTLPMLRAMDV-  379 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~--~~p~~VI~Ld~~~~~~~r---~R~d-D~~e~~~~Rl~~f~~~~~~l~~~y~~-  379 (520)
                      ..+..+||+|=         |..++  ...+.-|||..|.+++.+   +|.. +-.++++.-.+.=..+.+...++|.= 
T Consensus        71 a~~~nvVlegr---------LA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgID  141 (179)
T COG1102          71 AKEGNVVLEGR---------LAGWIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGID  141 (179)
T ss_pred             HHcCCeEEhhh---------hHHHHhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            23667999884         22222  235667999999987543   3332 22222222111112233444566642 


Q ss_pred             CCCE----EEEECC-CCHHHHHHHHHHHHHH
Q psy11031        380 ETRL----TIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       380 ~~~l----~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      -+.+    ++||.+ -++++|+.-+...+..
T Consensus       142 idDlSiyDLVinTs~~~~~~v~~il~~aid~  172 (179)
T COG1102         142 IDDLSIYDLVINTSKWDPEEVFLILLDAIDA  172 (179)
T ss_pred             CccceeeEEEEecccCCHHHHHHHHHHHHHh
Confidence            1111    457755 5788888877776654

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.89  E-value=2.8e-08  Score=96.19  Aligned_cols=165  Identities=13%  Similarity=0.188  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---------------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---------------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---------------  290 (520)
                      .+|.|.|++||||||+|+.|++ + |+.+++.+++.+   +....+++....+.+.+..+-+.|+               
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~-g~~vid~D~i~~---~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~   76 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-E-GFLIVDADQVAR---DIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFAS   76 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-CCeEEeCcHHHH---HHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCC
Confidence            3699999999999999999987 6 999999999998   6666777777777776655444332               


Q ss_pred             --------HH----HHHHHHHHHhccccCCC-cEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCC
Q psy11031        291 --------DV----VLDIVYAEMKKTKYTEA-DGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQID  353 (520)
Q Consensus       291 --------~l----v~~ll~~~l~~~~~~~~-~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~d  353 (520)
                              .+    +.+.+.+++.. ....+ ..+|++ -|-=      ++..+ ..++.+|+++||.+... |  .|..
T Consensus        77 ~~~~~~le~i~hP~v~~~~~~~~~~-~~~~~~~~vv~e-~plL------~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g  148 (200)
T PRK14734         77 PEQTALLNAITHPRIAEETARRFNE-ARAQGAKVAVYD-MPLL------VEKGLDRKMDLVVVVDVDVEERVRRLVEKRG  148 (200)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHH-HHhcCCCEEEEE-eece------eEcCccccCCeEEEEECCHHHHHHHHHHcCC
Confidence                    11    11122222221 00111 223333 2211      11111 13577999999998642 2  3434


Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       354 D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      -+.+.+.+|+..+....    ..... . -.+||.+.+++++.+++...+...+.+
T Consensus       149 ~s~e~~~~ri~~Q~~~~----~k~~~-a-d~vI~N~g~~e~l~~~v~~~~~~~~~~  198 (200)
T PRK14734        149 LDEDDARRRIAAQIPDD----VRLKA-A-DIVVDNNGTREQLLAQVDGLIAEILSR  198 (200)
T ss_pred             CCHHHHHHHHHhcCCHH----HHHHh-C-CEEEECcCCHHHHHHHHHHHHHHHHhc
Confidence            56778888887554431    11222 2 256899999999999999887665544

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.89  E-value=2.9e-08  Score=97.31  Aligned_cols=171  Identities=13%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHH------HHhhhhcCC---ccchHHHHHHH
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR------IKSSVSAGD---FVNRDVVLDIV  297 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~------i~~~l~~G~---~vPd~lv~~ll  297 (520)
                      +|+|.|..|||||||++.|++.+ +...+....... .......++..++.      ++.++....   ........-++
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l-~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~   78 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKL-GMKYFPEAGIHY-LDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY   78 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh-CCCeeeccchhc-cccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH
Confidence            48999999999999999999986 775553321110 00111223333332      444544322   12222222222


Q ss_pred             HHHHhc------cccCCCcEEEEeCCCCC-HH-----------------HHHHHHhh----cCCCCCEEEecCChhhhhc
Q psy11031        298 YAEMKK------TKYTEADGIVIDGFPRE-MS-----------------QLIDFENK----YQIHPPMILIDCSKLVLHK  349 (520)
Q Consensus       298 ~~~l~~------~~~~~~~G~ILDGFPrt-~~-----------------Qae~l~~~----~~~p~~VI~Ld~~~~~~~r  349 (520)
                      ..|...      .....++++|+|+|+-+ ..                 ....+...    +..|+.+|+|+++.+.+.+
T Consensus        79 ~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~  158 (219)
T cd02030          79 SSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQK  158 (219)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHH
Confidence            223220      01224578999998532 11                 11112211    2457789999999976432


Q ss_pred             ---cCCCCCHH----HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC--CCHHHHHHHHHH
Q psy11031        350 ---GQIDNSVS----AFRRRLELFRERTLPMLRAMDVETRLTIVDGD--TQLPQVREEFER  401 (520)
Q Consensus       350 ---~R~dD~~e----~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~--~~~e~V~~~I~~  401 (520)
                         .|....+.    ..-.++..++...  ....|.....+++||++  .+.+.|.+.|..
T Consensus       159 Ri~~R~~~~e~~~~~~yl~~l~~~y~~~--~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         159 RIKKRGDPHEMKVTSAYLQDIENAYKKT--FLPEISEHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHHHcCCchhhcccHHHHHHHHHHHHHH--HHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence               23221111    1112222222111  01124344578899999  888888887753

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK06762 hypothetical protein; Provisional

Probab=98.87  E-value=5.7e-08  Score=90.48  Aligned_cols=151  Identities=12%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      |.+|+|.|+|||||||+|+.|++.+. ++.+++. |.++   ........         ..+. .-.+.+..++...+. 
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~-D~~r---~~l~~~~~---------~~~~-~~~~~~~~~~~~~~~-   66 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ-DVVR---RDMLRVKD---------GPGN-LSIDLIEQLVRYGLG-   66 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH-HHHH---HHhccccC---------CCCC-cCHHHHHHHHHHHHh-
Confidence            67899999999999999999999862 4666775 4455   21111000         0010 111233333333333 


Q ss_pred             cccCCCcEEEEeCCCCCHHH---HHHHHhhcCCCCCEEEecCChhhhh-c--cCCC---CCHHHHHHHHHHHHHHhHHHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQ---LIDFENKYQIHPPMILIDCSKLVLH-K--GQID---NSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Q---ae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~d---D~~e~~~~Rl~~f~~~~~~l~  374 (520)
                          .+..+|+|+.-.....   ...+.+....+..+|+|++|.+.+. |  .|..   ...+.++..++.+.    .+ 
T Consensus        67 ----~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~----~~-  137 (166)
T PRK06762         67 ----HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHD----TL-  137 (166)
T ss_pred             ----CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcC----Cc-
Confidence                4567999997443332   3344444444557999999976532 2  3322   12444444433321    11 


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ..+   + .+.++.+.++++|.++|...+
T Consensus       138 ~~~---~-~~~~~~~~~~~~v~~~i~~~~  162 (166)
T PRK06762        138 GVI---G-ETIFTDNLSLKDIFDAILTDI  162 (166)
T ss_pred             CCC---C-eEEecCCCCHHHHHHHHHHHh
Confidence            111   2 355677789999999988765

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.87  E-value=2.5e-08  Score=96.85  Aligned_cols=170  Identities=11%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc----hHHHHhhhhcCCccchH-----
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL----NSRIKSSVSAGDFVNRD-----  291 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~----g~~i~~~l~~G~~vPd~-----  291 (520)
                      .+..+..|+|+||+||||||+++.|.+..+.+ ++....--|..-.....+..+    -..+...+.+|..+.-.     
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~-~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~   87 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPF-HFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN   87 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcc-cccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence            35578899999999999999999998653222 111111111000010111111    11233334344333210     


Q ss_pred             HH---HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh--h-hh--ccCCCCCHHHHHHHH
Q psy11031        292 VV---LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL--V-LH--KGQIDNSVSAFRRRL  363 (520)
Q Consensus       292 lv---~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~--~-~~--r~R~dD~~e~~~~Rl  363 (520)
                      ..   ..-+...+.     .++.+|+|.=   ..-+..+.+..  ++.++++.++..  . ..  +.|.+++.+.+.+|+
T Consensus        88 ~YGt~~~~i~~~~~-----~g~~vi~~~~---~~g~~~l~~~~--pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl  157 (206)
T PRK14738         88 YYGVPKAPVRQALA-----SGRDVIVKVD---VQGAASIKRLV--PEAVFIFLAPPSMDELTRRLELRRTESPEELERRL  157 (206)
T ss_pred             eecCCHHHHHHHHH-----cCCcEEEEcC---HHHHHHHHHhC--CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            00   122333333     3556888863   45555565543  566666666432  2 22  356677888899999


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      ..+........     ...++.||++.++++++++|...|...
T Consensus       158 ~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        158 ATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             HHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            87765543211     124778999999999999999888754

>PRK00625 shikimate kinase; Provisional

Probab=98.86  E-value=4.7e-08  Score=92.54  Aligned_cols=104  Identities=12%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .|+|+|.|||||||+|+.|++++ |+.+++++++++   +....  .....+.++++ .|+    +.+.++-...+.  .
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l-~~~~id~D~~I~---~~~g~--~~~~~i~eif~~~Ge----~~fr~~E~~~l~--~   69 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDLIV---SNYHG--ALYSSPKEIYQAYGE----EGFCREEFLALT--S   69 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCCEEEhhHHHH---HHhCC--CCCCCHHHHHHHHCH----HHHHHHHHHHHH--H
Confidence            59999999999999999999997 999999999998   33211  01123444442 343    223322222233  2


Q ss_pred             cCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031        306 YTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLV  346 (520)
Q Consensus       306 ~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~  346 (520)
                      ......+|..|  .+-..+....|    .....||||+++.+.
T Consensus        70 l~~~~~VIs~GGg~~~~~e~~~~l----~~~~~Vv~L~~~~e~  108 (173)
T PRK00625         70 LPVIPSIVALGGGTLMIEPSYAHI----RNRGLLVLLSLPIAT  108 (173)
T ss_pred             hccCCeEEECCCCccCCHHHHHHH----hcCCEEEEEECCHHH
Confidence            22233455454  44444444444    233569999999764

>PRK07261 topology modulation protein; Provisional

Probab=98.86  E-value=7.3e-09  Score=97.70  Aligned_cols=91  Identities=19%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|+|+|||||||+|+.|++.+ |+.+++.+.+..   ..   +             ....+.+.....+...+.   
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~---~~---~-------------~~~~~~~~~~~~~~~~~~---   57 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHF---QP---N-------------WQERDDDDMIADISNFLL---   57 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEe---cc---c-------------cccCCHHHHHHHHHHHHh---
Confidence            369999999999999999999997 999999977654   11   1             012233445555555555   


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV  346 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~  346 (520)
                         +..|||||...+..+...+..    .+.+|+|++|...
T Consensus        58 ---~~~wIidg~~~~~~~~~~l~~----ad~vI~Ld~p~~~   91 (171)
T PRK07261         58 ---KHDWIIDGNYSWCLYEERMQE----ADQIIFLNFSRFN   91 (171)
T ss_pred             ---CCCEEEcCcchhhhHHHHHHH----CCEEEEEcCCHHH
Confidence               234999998877555555553    4779999999864

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.85  E-value=1.3e-08  Score=98.39  Aligned_cols=158  Identities=13%  Similarity=0.108  Sum_probs=88.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch-HHHHhhhhcCCccchHHHHHHHH----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN-SRIKSSVSAGDFVNRDVVLDIVY----  298 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g-~~i~~~l~~G~~vPd~lv~~ll~----  298 (520)
                      .+.+|+|.|.|||||||+|+.|++++ |+.++..+|++|   +........+ ...+..++.|+.++++....++.    
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~-~~~~~~~~D~~r---~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~   77 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHR-AIDIVLSGDYLR---EFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD   77 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc-CCeEEehhHHHH---HHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence            35789999999999999999999997 999999999999   4443323322 23333344444444432222221    


Q ss_pred             ----------HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh--hhhc--cCCCC-CHHHHHHHH
Q psy11031        299 ----------AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL--VLHK--GQIDN-SVSAFRRRL  363 (520)
Q Consensus       299 ----------~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~--~~~r--~R~dD-~~e~~~~Rl  363 (520)
                                ..+. .....+..+|+||......+......   ....++++-+++.  .+.|  .|..+ +...-.+|+
T Consensus        78 q~~~v~~~L~~va~-~~l~~G~sVIvEgv~l~p~~~~~~~~---~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~  153 (197)
T PRK12339         78 QARAIMPGINRVIR-RALLNGEDLVIESLYFHPPMIDENRT---NNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRL  153 (197)
T ss_pred             HHHHHHHHHHHHHH-HHHHcCCCEEEEecCcCHHHHHHHHh---cCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHH
Confidence                      1111 01235677999997665555432221   1124566655432  2222  22211 111122466


Q ss_pred             HHHHHHhHHHHHHhhh---CCCEEEEECC
Q psy11031        364 ELFRERTLPMLRAMDV---ETRLTIVDGD  389 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~---~~~l~~IDa~  389 (520)
                      -.|..++..+-+|.-+   ...+-+||++
T Consensus       154 ~~~~~~ir~i~~~l~~~a~~~~i~~i~~~  182 (197)
T PRK12339        154 AEHLPEYRTIMDYSIADARGYNIKVIDTD  182 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeecCc
Confidence            6666677777777632   2334556554

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.85  E-value=1.1e-07  Score=90.76  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccccc-----CCcchHHHHhhhhcCCccchHHH-------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD-----GEGLNSRIKSSVSAGDFVNRDVV-------  293 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~-----~t~~g~~i~~~l~~G~~vPd~lv-------  293 (520)
                      .+|+|+||+||||||+++.|+..+ +...+..+..+.   .....     -...++.....++.|.......+       
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE-QTQLLVAHRYIT---RPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC-CCeEEEcCEECC---CccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            479999999999999999999876 654444433333   11100     01122233333444432211000       


Q ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHHHHHHHh
Q psy11031        294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLELFRERT  370 (520)
Q Consensus       294 ~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~~f~~~~  370 (520)
                      ..-+...+.     .+..+|++|-   ..-+..+.+.++.+..+|+|++|.+.+. |  +|...+.+.+++|++.+    
T Consensus        79 ~~~~~~~l~-----~g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~----  146 (186)
T PRK10078         79 GIEIDLWLH-----AGFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARA----  146 (186)
T ss_pred             cHHHHHHHh-----CCCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHh----
Confidence            001233333     4567888887   3334445555555556899999987642 1  34445667788888532    


Q ss_pred             HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                          .+|.. ...++||.+.+++++.++|...|..
T Consensus       147 ----~~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~  176 (186)
T PRK10078        147 ----ARYQP-QDCHTLNNDGSLRQSVDTLLTLLHL  176 (186)
T ss_pred             ----hhhcc-CCEEEEeCCCCHHHHHHHHHHHHhh
Confidence                13332 3467789889999999998877644

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.84  E-value=3.1e-08  Score=109.56  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=101.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcCCccchHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G~~vPd~lv~~ll~~~  300 (520)
                      +.+.++|+|+|.|||||||+++.||+++ |+..+++++++.   +.      .|..+.+++ ..|+.---++-.+++.+-
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L-~~~fiD~D~~ie---~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~   72 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMM-RLPFADADVEIE---RE------IGMSIPSYFEEYGEPAFREVEADVVADM   72 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHh-CCCEEEchHHHH---HH------HCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999997 999999999988   22      345566766 456533333333443332


Q ss_pred             HhccccCCCcEEEE-e--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc------cCCCCCHHHHHHHHHHHHHHhH
Q psy11031        301 MKKTKYTEADGIVI-D--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK------GQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       301 l~~~~~~~~~G~IL-D--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r------~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      +.      ..+.|| -  |.+.+.+....|.+.+.....||||+++.+.+.+      .|+--... -..++....+...
T Consensus        73 ~~------~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~-~~~~~~~l~~~R~  145 (542)
T PRK14021         73 LE------DFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGD-ANKRWKKLFKQRD  145 (542)
T ss_pred             Hh------cCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCC-cHHHHHHHHHHHH
Confidence            22      223344 3  3666666666665555444579999999875432      23311100 1234444444444


Q ss_pred             HHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      ++   |++... ++||.+ .+++++.+.|.+.+..
T Consensus       146 ~~---Y~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        146 PV---FRQVAN-VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             HH---HHhhCC-EEEECCCCCHHHHHHHHHHHHHh
Confidence            44   443222 456755 5899999999888864

>PRK13946 shikimate kinase; Provisional

Probab=98.82  E-value=1.6e-07  Score=89.43  Aligned_cols=160  Identities=11%  Similarity=0.072  Sum_probs=91.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+..|+|+|.|||||||+++.|++++ |+.+++.+.++.   ...  +....+.+..   .|+..-.++..+++...+. 
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L-g~~~id~D~~~~---~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~-   78 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML-GLPFLDADTEIE---RAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK-   78 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc-CCCeECcCHHHH---HHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh-
Confidence            45679999999999999999999997 999999988776   332  2222222221   2321111222333333222 


Q ss_pred             cccCCCcEEEEeCC--CCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-----cCC----CCCHHHHHHHHHHHHHHhH
Q psy11031        304 TKYTEADGIVIDGF--PREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-----GQI----DNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       304 ~~~~~~~G~ILDGF--Prt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-----~R~----dD~~e~~~~Rl~~f~~~~~  371 (520)
                          ....+|..|.  ....+..+.|..    ...+|||++|.+.+. |     +|+    .+..+.++    .   ...
T Consensus        79 ----~~~~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~----~---~~~  143 (184)
T PRK13946         79 ----GGPLVLATGGGAFMNEETRAAIAE----KGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLA----R---LME  143 (184)
T ss_pred             ----cCCeEEECCCCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHH----H---HHH
Confidence                2234555542  344454555543    346899999987542 1     222    11112222    2   112


Q ss_pred             HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      ....+|... .+.....+.+++++.+.|.+.|...+.+
T Consensus       144 ~R~~~y~~~-dl~i~~~~~~~~~~~~~i~~~i~~~~~~  180 (184)
T PRK13946        144 ERYPVYAEA-DLTVASRDVPKEVMADEVIEALAAYLEK  180 (184)
T ss_pred             HHHHHHHhC-CEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence            222345542 3554557789999999999988775433

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.81  E-value=1.1e-07  Score=89.87  Aligned_cols=157  Identities=16%  Similarity=0.192  Sum_probs=87.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ...|+|+|++||||||+++.|++.+ |+.+++.+..+.   ...  +..++...+   ..|+..=-+.-.+++.. +.  
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~i~---~~~--g~~i~~~~~---~~g~~~fr~~e~~~l~~-l~--   71 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIE---KRT--GADIGWVFD---VEGEEGFRDREEKVINE-LT--   71 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc-CCcEEECCchHH---HHh--CcCHhHHHH---HhCHHHHHHHHHHHHHH-HH--
Confidence            4579999999999999999999997 999999988766   221  222222211   12221000111223322 22  


Q ss_pred             ccCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh------ccCCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        305 KYTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH------KGQIDNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       305 ~~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~------r~R~dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                         ...++|+. |  .+-+......|.+    ...+|||+++.+.+.      ..|+.-........++.+.....++++
T Consensus        72 ---~~~~~vi~~ggg~v~~~~~~~~l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~  144 (172)
T PRK05057         72 ---EKQGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYE  144 (172)
T ss_pred             ---hCCCEEEEcCCchhCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence               12345554 2  3444444455543    346999999987542      123322111112234444444455433


Q ss_pred             HhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGD-TQLPQVREEFERVLK  404 (520)
Q Consensus       376 ~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~  404 (520)
                      .+.+    ++||++ .+++++.+.|.+.+.
T Consensus       145 ~~Ad----~~idt~~~s~~ei~~~i~~~l~  170 (172)
T PRK05057        145 EIAD----VTIRTDDQSAKVVANQIIHMLE  170 (172)
T ss_pred             hhCC----EEEECCCCCHHHHHHHHHHHHh
Confidence            3322    467866 689999998887764

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.80  E-value=2.5e-08  Score=90.01  Aligned_cols=105  Identities=12%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch---HHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN---SRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g---~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      +|+|+|+|||||||+|+.|++.+ +..+|+.+++.+   .......+..   ......       -.+.+...+...+. 
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~-~~~~i~~D~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~-   68 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL-GAVVISQDEIRR---RLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALR-   68 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS-TEEEEEHHHHHH---HHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC-CCEEEeHHHHHH---HHcccccccchhHHHHHHH-------HHHHHHHHHHHHHH-
Confidence            58999999999999999999997 999999988776   2221111100   000000       01234455555555 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhh
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVL  347 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~  347 (520)
                          .+..+|+|+.-....+...+.+..   +.+..+|+|+|+.+.+
T Consensus        69 ----~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~  111 (143)
T PF13671_consen   69 ----NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETL  111 (143)
T ss_dssp             ----TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHH
T ss_pred             ----cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHH
Confidence                456799997655555555554443   3344689999998754

...

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.79  E-value=9.8e-08  Score=92.86  Aligned_cols=167  Identities=14%  Similarity=0.220  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh--------cCCc-cc----
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS--------AGDF-VN----  289 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~--------~G~~-vP----  289 (520)
                      +.+.+|.|.|++||||||+|+.|++ + |+..++++.+.+   +....++.....+...+.        .|.. +-    
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~-g~~v~d~D~i~~---~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l   77 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-GCELFEADRVAK---ELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRI   77 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-C-CCeEEeccHHHH---HHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHH
Confidence            4567899999999999999999986 5 999999998888   444333333233333221        1211 11    


Q ss_pred             --------------hHHHHHHH----HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c
Q psy11031        290 --------------RDVVLDIV----YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K  349 (520)
Q Consensus       290 --------------d~lv~~ll----~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r  349 (520)
                                    +.++...+    ...+.+ ....++.+|+-+-|.=      |+... ..++.+|+++||.+.+. |
T Consensus        78 ~~~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~-~~~~~~~vvv~e~pLL------~e~~~~~~~d~ii~V~a~~e~~~~R  150 (208)
T PRK14731         78 AQVVFSDPEKLGALNRLIHPKVFAAFQRAVDR-AARRGKRILVKEAAIL------FESGGDAGLDFIVVVAADTELRLER  150 (208)
T ss_pred             HHHHhCCHHHHHHHHHHHCHHHHHHHHHHHHH-HHhcCCCEEEEEeeee------eecCchhcCCeEEEEECCHHHHHHH
Confidence                          01111122    222331 0112234555444421      22211 12477999999998642 2


Q ss_pred             --cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        350 --GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       350 --~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                        .|...+.+.+.+|+..+......+ +..     -++|+++.+++++++++...+...+
T Consensus       151 l~~R~~~s~e~~~~Ri~~q~~~~~~~-~~a-----d~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        151 AVQRGMGSREEIRRRIAAQWPQEKLI-ERA-----DYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             HHHcCCCCHHHHHHHHHHcCChHHHH-HhC-----CEEEECCCCHHHHHHHHHHHHHHHH
Confidence              455557899999998766554443 221     2468999999999999988876543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.76  E-value=1.9e-07  Score=86.76  Aligned_cols=152  Identities=20%  Similarity=0.164  Sum_probs=82.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc----hHHHHHHHHHHHhc
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN----RDVVLDIVYAEMKK  303 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP----d~lv~~ll~~~l~~  303 (520)
                      |+|+|++||||||+|+.|++.+ +..+++.+++..   ...         ++. +..|...+    ..+...+...... 
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-~~~~v~~D~~~~---~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-   65 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-GAKFIEGDDLHP---AAN---------IEK-MSAGIPLNDDDRWPWLQNLNDASTA-   65 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-CCeEEeCccccC---hHH---------HHH-HHcCCCCChhhHHHHHHHHHHHHHH-
Confidence            5789999999999999999997 999999888743   100         000 00011111    1222222211111 


Q ss_pred             cccC-CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCC--CHHHHHHHHHHHHHHhHHHHHHh
Q psy11031        304 TKYT-EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDN--SVSAFRRRLELFRERTLPMLRAM  377 (520)
Q Consensus       304 ~~~~-~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD--~~e~~~~Rl~~f~~~~~~l~~~y  377 (520)
                       ... ....+|..++.+ ....+.+.. .+..-.+++|+|+.+.+.   +.|..+  ..+.++.++..+.   .+   .+
T Consensus        66 -~l~~~~~~Vi~~t~~~-~~~r~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~---~~---~~  136 (163)
T TIGR01313        66 -AAAKNKVGIITCSALK-RHYRDILRE-AEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALE---EP---LA  136 (163)
T ss_pred             -HHhcCCCEEEEecccH-HHHHHHHHh-cCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhC---CC---CC
Confidence             111 223455567653 333344432 232334799999987643   134322  2344444333221   00   01


Q ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        378 DVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       378 ~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      . ...++.||++.++++|.+.+...|.
T Consensus       137 ~-e~~~~~id~~~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       137 D-ETDVLRVDIDQPLEGVEEDCIAVVL  162 (163)
T ss_pred             C-CCceEEEECCCCHHHHHHHHHHHHh
Confidence            1 1357899999999999999877653

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.75  E-value=2.1e-07  Score=87.02  Aligned_cols=150  Identities=15%  Similarity=0.227  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      ++|+|.|.||.||||.|++|+ ++ |+.++++.++.++   .- -.+...    + ......+..+.+...+...+.   
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~l-g~~~i~l~el~~e---~~-~~~~~d----e-~r~s~~vD~d~~~~~le~~~~---   66 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-EL-GYKVIELNELAKE---NG-LYTEYD----E-LRKSVIVDVDKLRKRLEELLR---   66 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-Hh-CCceeeHHHHHHh---cC-CeeccC----C-ccceEEeeHHHHHHHHHHHhc---
Confidence            469999999999999999999 76 9999999999982   11 000000    0 000112333444444443332   


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHH--HHHHhHHHHHHhhhC
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLEL--FRERTLPMLRAMDVE  380 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~--f~~~~~~l~~~y~~~  380 (520)
                         ..+.|+|+-         +...+..++.||.|.|++..+.   ++| ..+++.+..-++.  +--......+.|   
T Consensus        67 ---~~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAEi~~vi~~EA~E~~---  130 (180)
T COG1936          67 ---EGSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAEILDVILIEAVERF---  130 (180)
T ss_pred             ---cCCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence               457889885         3334444788999999987653   233 2344544443321  111112233334   


Q ss_pred             CCEEEEE-CCCCHHHHHHHHHHHHHH
Q psy11031        381 TRLTIVD-GDTQLPQVREEFERVLKK  405 (520)
Q Consensus       381 ~~l~~ID-a~~~~e~V~~~I~~~I~~  405 (520)
                      ...+.|| .+.+++++.+.|...|..
T Consensus       131 ~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         131 EAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHcc
Confidence            4478899 558899999999888875

>TIGR00152 dephospho-CoA kinase

Probab=98.73  E-value=7.6e-08  Score=91.86  Aligned_cols=157  Identities=14%  Similarity=0.286  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccc-----------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVN-----------  289 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vP-----------  289 (520)
                      +|.|.|++||||||+|+.|++.+ |+.+++++++.+   +....+++....+.+.+.      .|+.--           
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~---~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~   76 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAH---QVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDP   76 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHH---HHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCH
Confidence            48999999999999999999986 799999999998   555555555554444332      222110           


Q ss_pred             ------hHH----HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCH
Q psy11031        290 ------RDV----VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSV  356 (520)
Q Consensus       290 ------d~l----v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~  356 (520)
                            +.+    +.+-+.+.+.  .......+|+-+.|.-.+.  .+.   ...+.+++++++.+.+. |  .|...+.
T Consensus        77 ~~~~~le~ilhP~i~~~i~~~i~--~~~~~~~~vvi~~pll~e~--~~~---~~~D~vv~V~~~~~~~~~Rl~~R~~~s~  149 (188)
T TIGR00152        77 EELKWLNNLLHPLIREWMKKLLA--QFQSKLAYVLLDVPLLFEN--KLR---SLCDRVIVVDVSPQLQLERLMQRDNLTE  149 (188)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHH--HhhcCCCEEEEEchHhhhC--CcH---HhCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence                  011    1222233343  2211223555555543221  111   23577999999998643 2  3555677


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFE  400 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~  400 (520)
                      +.+.+|+....    +..+.-. .. -.+|+.+.+++++..++.
T Consensus       150 ~~~~~r~~~q~----~~~~~~~-~a-d~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       150 EEVQKRLASQM----DIEERLA-RA-DDVIDNSATLADLVKQLE  187 (188)
T ss_pred             HHHHHHHHhcC----CHHHHHH-hC-CEEEECCCCHHHHHHHHh
Confidence            88888887642    2212111 11 246789999999887764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PLN02199 shikimate kinase

Probab=98.72  E-value=3.6e-07  Score=92.82  Aligned_cols=165  Identities=13%  Similarity=0.088  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~  302 (520)
                      ....|+|+|.+||||||+++.|++.+ |+..++++.+++   +...     |..+.+++. .|+    +.+.++-.+.+.
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~L-g~~fIDtD~lIe---~~~~-----G~sI~eIf~~~GE----~~FR~~E~e~L~  167 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVL-GYTFFDCDTLIE---QAMN-----GTSVAEIFVHHGE----NFFRGKETDALK  167 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-CCCEEehHHHHH---HHhc-----CCCHHHHHHHhCH----HHHHHHHHHHHH
Confidence            35679999999999999999999997 999999999998   3321     333444443 454    344444444444


Q ss_pred             ccccCCCcEEEE-e--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc--------cCCC---CCHHHHHHHHHHHHH
Q psy11031        303 KTKYTEADGIVI-D--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK--------GQID---NSVSAFRRRLELFRE  368 (520)
Q Consensus       303 ~~~~~~~~G~IL-D--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r--------~R~d---D~~e~~~~Rl~~f~~  368 (520)
                        ......+.|| -  |.+-.......+.     ...||||+++.+.+.+        .|+-   .+.+.+..-++...+
T Consensus       168 --~L~~~~~~VIStGGG~V~~~~n~~~L~-----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~  240 (303)
T PLN02199        168 --KLSSRYQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSA  240 (303)
T ss_pred             --HHHhcCCEEEECCCcccCCHHHHHHHh-----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHH
Confidence              2222223333 3  3444444444443     2469999999875421        2321   122222111222233


Q ss_pred             HhHHHHHHhhhCCCEEEEE-------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        369 RTLPMLRAMDVETRLTIVD-------------GDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       369 ~~~~l~~~y~~~~~l~~ID-------------a~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      ....-..+|...+  ++|+             .+.+++++..+|...+.+.++.+
T Consensus       241 L~~~R~plY~~Ad--~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~  293 (303)
T PLN02199        241 IWDERGEAYTNAN--ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE  293 (303)
T ss_pred             HHHHHHHHHHhCC--EEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhc
Confidence            3333445566533  3466             45789999999988888777543

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.72  E-value=3.9e-08  Score=88.93  Aligned_cols=137  Identities=12%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|.|+|||||||+|+.|++++ |+++++.+.+..   +..      +........      ..-+.+.+...+.  ..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~---e~~------~~~~~~~~~------~~~i~~~l~~~~~--~~   62 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRT---EEV------GKLASEVAA------IPEVRKALDERQR--EL   62 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCH---HHH------HHHHHHhcc------cHhHHHHHHHHHH--HH
Confidence            48999999999999999999998 999999985543   211      111111000      0112222333233  22


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-------cCCCCCHHHHHHHHHHHHHH-hHHHHHHh
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-------GQIDNSVSAFRRRLELFRER-TLPMLRAM  377 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-------~R~dD~~e~~~~Rl~~f~~~-~~~l~~~y  377 (520)
                      ....+||+||--...  .     .....+.+|||+++.+.+. |       ++...+.+..++++....+. ......+|
T Consensus        63 ~~~~~~Vidg~~~~~--~-----~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  135 (147)
T cd02020          63 AKKPGIVLEGRDIGT--V-----VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPL  135 (147)
T ss_pred             hhCCCEEEEeeeeee--E-----EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccc
Confidence            234579999963211  0     1223457899999998642 1       13345677777777665443 24444566


Q ss_pred             hhCCCEEEEEC
Q psy11031        378 DVETRLTIVDG  388 (520)
Q Consensus       378 ~~~~~l~~IDa  388 (520)
                      +..+.=+.||.
T Consensus       136 ~~~~~dl~i~~  146 (147)
T cd02020         136 KLAEDAIVIDT  146 (147)
T ss_pred             cCCCCcEEEeC
Confidence            44444345664

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.71  E-value=2.2e-07  Score=91.64  Aligned_cols=37  Identities=19%  Similarity=0.416  Sum_probs=35.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +.+|.|.|++||||||+|+.|+++| |+.+++.|.++|
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~-~~~~~~~~~~~r   40 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKL-GFHYLDTGAMYR   40 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-CCCcccCchhHH
Confidence            5789999999999999999999998 999999999988

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.71  E-value=1.9e-07  Score=88.62  Aligned_cols=127  Identities=16%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc-----c-------------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF-----V-------------  288 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~-----v-------------  288 (520)
                      +|.|.|++||||||+|+.|++ + |+.+++++++.+   +....+.+.+..+.+.+..+-.     +             
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~---~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~   75 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAH---EVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADP   75 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHH---hhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCH
Confidence            489999999999999999998 6 999999999999   6666666666666665532211     1             


Q ss_pred             -----chHHHHHHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031        289 -----NRDVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQIDNSVS  357 (520)
Q Consensus       289 -----Pd~lv~~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~dD~~e  357 (520)
                           -++++..++..++...  ......-+|+|+ |.-      |+..+ ...+.+++++||.+... |  .|...+.+
T Consensus        76 ~~~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL------~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~  148 (179)
T cd02022          76 EKRKKLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLL------FETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEE  148 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHh------hcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHH
Confidence                 1233333333333310  111123355554 222      22221 23577999999998643 2  34455677


Q ss_pred             HHHHHHHH
Q psy11031        358 AFRRRLEL  365 (520)
Q Consensus       358 ~~~~Rl~~  365 (520)
                      .+.+|+..
T Consensus       149 ~~~~r~~~  156 (179)
T cd02022         149 EAEARIAS  156 (179)
T ss_pred             HHHHHHHh
Confidence            88888775

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.71  E-value=1.6e-07  Score=93.57  Aligned_cols=156  Identities=15%  Similarity=0.176  Sum_probs=85.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      .|+|+|.|||||||+|+.|++.+    ..+.+++. |.++   .......   ......+       .+....++...+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr---~~~~~~~---~~~e~~~-------~~~~~~~i~~~l~   66 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIR---ESFPVWK---EKYEEFI-------RDSTLYLIKTALK   66 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHH---HHhHHhh---HHhHHHH-------HHHHHHHHHHHHh
Confidence            38999999999999999999864    13455555 5565   2221000   0111111       1223344555444


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHH---hhcCCCCCEEEecCChhhhhc---cCCC-CCHHHHHHHHHHHHHHhHHHHH
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFE---NKYQIHPPMILIDCSKLVLHK---GQID-NSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~---~~~~~p~~VI~Ld~~~~~~~r---~R~d-D~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                           .+..+|+||......+...+.   ...+.+..+|+++||.+.+.+   .|.. ...+.++.....|.   .|...
T Consensus        67 -----~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e---~p~~~  138 (249)
T TIGR03574        67 -----NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFD---EPGTK  138 (249)
T ss_pred             -----CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhC---CCCCC
Confidence                 345699999764443333333   333445568999999876432   2322 22344444333332   22222


Q ss_pred             HhhhCCCEEEEECCC--CHHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGDT--QLPQVREEFERVLKK  405 (520)
Q Consensus       376 ~y~~~~~l~~IDa~~--~~e~V~~~I~~~I~~  405 (520)
                      ++- ....++||++.  +.+++++.|...+.+
T Consensus       139 ~~w-d~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       139 YSW-DLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             CCc-cCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            211 12578899876  668888888776654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.71  E-value=2.7e-08  Score=87.40  Aligned_cols=35  Identities=31%  Similarity=0.625  Sum_probs=32.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +|+|.|+|||||||+|+.|+++| |+.+++++++++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~   35 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIR   35 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEE
Confidence            68999999999999999999998 999999999645

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.70  E-value=5.8e-07  Score=84.73  Aligned_cols=160  Identities=18%  Similarity=0.232  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCe---eeehhhHHhhhhcccccCCcc----hHHHHhhhhcCCcc--chH-----
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWT---QISLGKLLRYFANIEDDGEGL----NSRIKSSVSAGDFV--NRD-----  291 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~---~is~gdLlr~~~~~~~~~t~~----g~~i~~~l~~G~~v--Pd~-----  291 (520)
                      .+|+|+|++||||||+++.|+..+ +..   ++.....-|   .....+...    ...+...+..+...  ...     
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~-~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARL-AGDPRVHFVRRVITR---PASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSY   77 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc-CcCCcEEEeeEEccc---CCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence            468999999999999999999876 432   121111112   111111110    11222222222211  000     


Q ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHHHHHH
Q psy11031        292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLELFRE  368 (520)
Q Consensus       292 lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~~f~~  368 (520)
                      -+...+...+.     .+..+|+||-.   .....+.+.+. ...+|||+|+.+.+. |  .|...+.+.+.+|+..+..
T Consensus        78 g~~~~i~~~~~-----~g~~vv~~g~~---~~~~~~~~~~~-~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~  148 (179)
T TIGR02322        78 GIPAEIDQWLE-----AGDVVVVNGSR---AVLPEARQRYP-NLLVVNITASPDVLAQRLAARGRESREEIEERLARSAR  148 (179)
T ss_pred             cChHHHHHHHh-----cCCEEEEECCH---HHHHHHHHHCC-CcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Confidence            00111222222     35679999972   23344444333 346899999987642 1  3434456778888764332


Q ss_pred             HhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        369 RTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       369 ~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ...       ....++.|+++.+++++.++|.+.|.+
T Consensus       149 ~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       149 FAA-------APADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             ccc-------ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            211       223466789999999999999887753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.70  E-value=4.6e-07  Score=85.48  Aligned_cols=161  Identities=9%  Similarity=0.079  Sum_probs=82.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcC--CccchHH---HHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAG--DFVNRDV---VLDIV  297 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G--~~vPd~l---v~~ll  297 (520)
                      .++|++.|+|||||||+|+.|++.+. .+.|++.+++..   ........   . +..+ .++  ...|.+.   +...+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~---~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~y~~~   74 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE---ALPLKCQD---A-EGGIEFDGDGGVSPGPEFRLLEGAW   74 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH---hcChhhcc---c-ccccccCccCCcccchHHHHHHHHH
Confidence            45899999999999999999999862 245667766655   22110000   0 0001 011  1122222   22222


Q ss_pred             HHHHhccccCCCcEEEEeC-CCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        298 YAEMKKTKYTEADGIVIDG-FPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILDG-FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      ...+.. ....+..+|+|. |+.....-+.+....+.+...|+++|+.+.+.+   .|.+...     ++...  +..  
T Consensus        75 ~~~~~~-~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~-----~~~~~--~~~--  144 (175)
T cd00227          75 YEAVAA-MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP-----GQARK--QAR--  144 (175)
T ss_pred             HHHHHH-HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc-----hHHHH--HHH--
Confidence            222321 233577899996 552222223333333334458899999876432   3433211     11110  000  


Q ss_pred             HHHhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGD-TQLPQVREEFERVL  403 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I  403 (520)
                       .++......+.||.+ .++++..+.|.+.|
T Consensus       145 -~~~~~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         145 -VVHAGVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             -HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence             112112235689988 57988888877654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.69  E-value=3.1e-07  Score=87.14  Aligned_cols=160  Identities=14%  Similarity=0.128  Sum_probs=93.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc-------hHHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN-------RDVVLDIV  297 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP-------d~lv~~ll  297 (520)
                      ..+++|+|++||||||+++.|+..+ +..+++.+++..   ..         .++.. ..|....       ...+.+..
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l-~~~~i~gd~~~~---~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~   68 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALF-SAKFIDGDDLHP---AK---------NIDKM-SQGIPLTDEDRLPWLERLNDAS   68 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc-CCEEECCcccCC---Hh---------HHHHH-hcCCCCCcccchHHHHHHHHHH
Confidence            3579999999999999999999986 888887765533   10         01111 1121111       12222222


Q ss_pred             HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        298 YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      ...+.    ....|||+..|-+. ...+.+. ....+..+|+|+|+.+.+.   ..|..+.     .+.+.+..+...+.
T Consensus        69 ~~~~~----~~~~g~iv~s~~~~-~~R~~~r-~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-----~~~~vl~~Q~~~~e  137 (176)
T PRK09825         69 YSLYK----KNETGFIVCSSLKK-QYRDILR-KSSPNVHFLWLDGDYETILARMQRRAGHF-----MPPDLLQSQFDALE  137 (176)
T ss_pred             HHHHh----cCCCEEEEEEecCH-HHHHHHH-hhCCCEEEEEEeCCHHHHHHHHhcccCCC-----CCHHHHHHHHHHcC
Confidence            22212    13578888777433 2233333 3344556899999998643   2343222     14444444433332


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      ..-.....++.||++++++.+...+...+...++.
T Consensus       138 ~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  172 (176)
T PRK09825        138 RPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQA  172 (176)
T ss_pred             CCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            22222235899999999999999888888776654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.68  E-value=8.7e-07  Score=85.28  Aligned_cols=163  Identities=19%  Similarity=0.241  Sum_probs=93.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCC----c----chHHHHhhhhcCCccch-----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGE----G----LNSRIKSSVSAGDFVNR-----  290 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t----~----~g~~i~~~l~~G~~vPd-----  290 (520)
                      ....|+|+|++||||||+++.|++.+ ...++......|   . ...+.    .    ....+...+..|..+..     
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~-~~~~~~~~~~tr---~-p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD-PNLQLSVSATTR---A-PRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG   78 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC-ccceeccCcccc---C-CCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC
Confidence            56789999999999999999999986 433444433333   1 11111    0    01233333333332211     


Q ss_pred             HHH---HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEe-cCChhhhh---ccCCCCCHHHHHHHH
Q psy11031        291 DVV---LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI-DCSKLVLH---KGQIDNSVSAFRRRL  363 (520)
Q Consensus       291 ~lv---~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~L-d~~~~~~~---r~R~dD~~e~~~~Rl  363 (520)
                      ...   ...+...+.     .+.-+|+|.-   ...+..+.+.+. ...+|++ .++.+.+.   ..|.+++.+.+++|+
T Consensus        79 ~~y~~~~~~i~~~l~-----~g~~vi~dl~---~~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl  149 (205)
T PRK00300         79 NYYGTPRSPVEEALA-----AGKDVLLEID---WQGARQVKKKMP-DAVSIFILPPSLEELERRLRGRGTDSEEVIARRL  149 (205)
T ss_pred             ccccCcHHHHHHHHH-----cCCeEEEeCC---HHHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            111   222333333     3556788864   444555665554 2344444 55554322   356778899999999


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      ..+.....    ++...+ ++.+  +.+.++++.++...|....
T Consensus       150 ~~~~~~~~----~~~~~d-~vi~--n~~~e~~~~~l~~il~~~~  186 (205)
T PRK00300        150 AKAREEIA----HASEYD-YVIV--NDDLDTALEELKAIIRAER  186 (205)
T ss_pred             HHHHHHHH----hHHhCC-EEEE--CCCHHHHHHHHHHHHHHHH
Confidence            98886643    333323 3334  3489999999999888764

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.67  E-value=2.7e-07  Score=86.92  Aligned_cols=159  Identities=16%  Similarity=0.240  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD------  291 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~------  291 (520)
                      .+|+|+||+||||||+++.|++.+ ...+++.....|   ... .+...        ...+...+..|+.+...      
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~-~~~~~~~~~~tr---~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED-PNLKFSISATTR---KPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNY   76 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC-ccccccccceee---CCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCee
Confidence            579999999999999999999987 555666555554   211 11110        11333334444433221      


Q ss_pred             --HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHHH
Q psy11031        292 --VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLELF  366 (520)
Q Consensus       292 --lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f  366 (520)
                        ...+.+...+.     .++.+|+|.   +...+..+.+.+..+..++++.++.+.+.   +.|.+++.+.+++|+..+
T Consensus        77 y~~~~~~i~~~~~-----~g~~vi~d~---~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~  148 (180)
T TIGR03263        77 YGTPKSPVEEALA-----AGKDVLLEI---DVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKA  148 (180)
T ss_pred             eCCcHHHHHHHHH-----CCCeEEEEC---CHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence              11233444444     356788985   45556666666543223444455554432   356677888999999876


Q ss_pred             HHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        367 RERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       367 ~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      ..+... .++    ...+ |+.+ +.++.++++...+.
T Consensus       149 ~~~~~~-~~~----~d~~-i~n~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       149 KKEIAH-ADE----FDYV-IVND-DLEKAVEELKSIIL  179 (180)
T ss_pred             HHHHhc-ccc----CcEE-EECC-CHHHHHHHHHHHHh
Confidence            643211 112    2233 3444 78888888877653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PLN02422 dephospho-CoA kinase

Probab=98.66  E-value=4.5e-07  Score=89.67  Aligned_cols=162  Identities=22%  Similarity=0.316  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch----------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR----------  290 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd----------  290 (520)
                      +|.|.|++||||||+|+.|+ ++ |+.+++++++.+   +....+++....+.+.+.      +|. +.-          
T Consensus         3 ~igltG~igsGKstv~~~l~-~~-g~~~idaD~~~~---~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d   76 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SS-GIPVVDADKVAR---DVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSD   76 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HC-CCeEEehhHHHH---HHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCC
Confidence            69999999999999999998 56 999999999999   666666555555554442      232 111          


Q ss_pred             --------HHHHHHHHHHHhcc--cc--CCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhhhc---cCCCC
Q psy11031        291 --------DVVLDIVYAEMKKT--KY--TEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVLHK---GQIDN  354 (520)
Q Consensus       291 --------~lv~~ll~~~l~~~--~~--~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~~r---~R~dD  354 (520)
                              +++...+..++...  ..  ....-+|+|- |      ..|+..+. ..+.|++++||.+.+.+   .|..-
T Consensus        77 ~~~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-p------LL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~  149 (232)
T PLN02422         77 PSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-P------LLFETKMDKWTKPVVVVWVDPETQLERLMARDGL  149 (232)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-h------hhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCC
Confidence                    12222222222100  11  1122344442 2      22332221 35779999999986432   34445


Q ss_pred             CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      +.+.+.+|+....    +..+. ..... ++|+.+.+.+++.+++...+....
T Consensus       150 s~eea~~Ri~~Q~----~~eek-~~~AD-~VI~N~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        150 SEEQARNRINAQM----PLDWK-RSKAD-IVIDNSGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             CHHHHHHHHHHcC----ChhHH-HhhCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence            6788888874211    22121 22222 468999999999999998876654

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.66  E-value=3.5e-07  Score=94.35  Aligned_cols=158  Identities=11%  Similarity=0.105  Sum_probs=87.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~  300 (520)
                      ......|+|+|.|||||||+++.|++++ |+.+++++..+.   +.  .    |..+.+++. .|+..-.++..+++...
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~L-g~~~id~D~~i~---~~--~----G~~i~ei~~~~G~~~fr~~e~~~l~~l  199 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARL-GVPFVELNREIE---RE--A----GLSVSEIFALYGQEGYRRLERRALERL  199 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEeHHHHHH---HH--h----CCCHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999997 999999987776   22  1    222333332 24321122223333333


Q ss_pred             HhccccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c----c--CC----CCCHHHHHHHHHHHH
Q psy11031        301 MKKTKYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K----G--QI----DNSVSAFRRRLELFR  367 (520)
Q Consensus       301 l~~~~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r----~--R~----dD~~e~~~~Rl~~f~  367 (520)
                      +.  .  ....+|-.|  .+......+.+..    ...+|||+++.+.+. |    .  |+    ++..+.+++.     
T Consensus       200 l~--~--~~~~VI~~Ggg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~-----  266 (309)
T PRK08154        200 IA--E--HEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRI-----  266 (309)
T ss_pred             Hh--h--CCCEEEECCCchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHH-----
Confidence            32  1  122333333  2333333333322    345899999987542 1    1  22    1112333322     


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKI  406 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~  406 (520)
                        ...-..+|...+  ++||++. +++++.+.|.+.|...
T Consensus       267 --~~~R~~~y~~ad--~~I~t~~~s~ee~~~~I~~~l~~~  302 (309)
T PRK08154        267 --LASREPLYARAD--AVVDTSGLTVAQSLARLRELVRPA  302 (309)
T ss_pred             --HHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence              222223443322  3578775 9999999998888644

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.63  E-value=3.2e-07  Score=83.84  Aligned_cols=101  Identities=12%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccccC
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYT  307 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~~  307 (520)
                      |+|+|+|||||||+|+.|++++ |+.+++.++++.   ....  ....+....   .|+    +.......+.+.  ...
T Consensus         2 i~l~G~~GsGKstla~~la~~l-~~~~~~~d~~~~---~~~~--~~~~~~~~~---~~~----~~~~~~e~~~~~--~~~   66 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL-GLPFVDLDELIE---QRAG--MSIPEIFAE---EGE----EGFRELEREVLL--LLL   66 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh-CCCEEEchHHHH---HHcC--CCHHHHHHH---HCH----HHHHHHHHHHHH--HHh
Confidence            8999999999999999999997 999999998887   3321  122222211   122    223332222222  222


Q ss_pred             CCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031        308 EADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       308 ~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                      ...++||+   |+..+......+    .....+|||+++.+.+
T Consensus        67 ~~~~~vi~~g~~~i~~~~~~~~~----~~~~~~i~l~~~~e~~  105 (154)
T cd00464          67 TKENAVIATGGGAVLREENRRLL----LENGIVVWLDASPEEL  105 (154)
T ss_pred             ccCCcEEECCCCccCcHHHHHHH----HcCCeEEEEeCCHHHH
Confidence            33456666   344443332222    2345699999998864

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG3347|consensus

Probab=98.63  E-value=3.4e-07  Score=83.45  Aligned_cols=144  Identities=18%  Similarity=0.290  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .-|.|+|.|-||+||||+|++||+++ |+.||.++++.++  +..-.+  ..+.-     +.-.+.++-+++-|...|. 
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~-~~~~i~isd~vkE--n~l~~g--yDE~y-----~c~i~DEdkv~D~Le~~m~-   74 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKT-GLEYIEISDLVKE--NNLYEG--YDEEY-----KCHILDEDKVLDELEPLMI-   74 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHh-CCceEehhhHHhh--hcchhc--ccccc-----cCccccHHHHHHHHHHHHh-
Confidence            34679999999999999999999997 9999999999993  111111  00011     1224667888888888888 


Q ss_pred             cccCCCcEEEEe----C-CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHH--HHHHHHhHHH
Q psy11031        304 TKYTEADGIVID----G-FPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRL--ELFRERTLPM  373 (520)
Q Consensus       304 ~~~~~~~G~ILD----G-FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl--~~f~~~~~~l  373 (520)
                           ..|.|+|    | ||.-         .   -+.|++|.|+-..+=   ..|. -++..++.-+  +.|.-.....
T Consensus        75 -----~Gg~IVDyHgCd~Fper---------w---fdlVvVLr~~~s~LY~RL~sRg-Y~e~Ki~eNiecEIfgv~~eea  136 (176)
T KOG3347|consen   75 -----EGGNIVDYHGCDFFPER---------W---FDLVVVLRTPNSVLYDRLKSRG-YSEKKIKENIECEIFGVVLEEA  136 (176)
T ss_pred             -----cCCcEEeecccCccchh---------h---eeEEEEEecCchHHHHHHHHcC-CCHHHHhhhcchHHHHHHHHHH
Confidence                 2578887    3 3321         1   257999999986531   1222 2233333222  3444445566


Q ss_pred             HHHhhhCCCEEEEECCCCHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQVREE  398 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~V~~~  398 (520)
                      .+.|... .++.+.++.. ++....
T Consensus       137 ~eSy~~~-iV~eL~s~~~-Eem~~n  159 (176)
T KOG3347|consen  137 RESYSPK-IVVELQSETK-EEMESN  159 (176)
T ss_pred             HHHcCCc-ceeecCcCCH-HHHHHH
Confidence            6778653 5666666654 544444

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.62  E-value=1.1e-06  Score=84.99  Aligned_cols=161  Identities=16%  Similarity=0.189  Sum_probs=97.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccc------------
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVN------------  289 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vP------------  289 (520)
                      |.|.|++||||||+|+.|++ + |+..++++++.+   +....+++....+.+.+.      +|. +.            
T Consensus         2 i~itG~~gsGKst~~~~l~~-~-g~~~i~~D~i~~---~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~   75 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-L-GAFGISADRLAK---RYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDE   75 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-C-CCEEEecchHHH---HHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCH
Confidence            78999999999999998875 5 999999999998   555555555554554332      232 11            


Q ss_pred             ------hHHHHHHHH----HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh---ccCCCCC
Q psy11031        290 ------RDVVLDIVY----AEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH---KGQIDNS  355 (520)
Q Consensus       290 ------d~lv~~ll~----~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~---r~R~dD~  355 (520)
                            ++++...+.    ..+.  .... ..+|+-.-|--      |+..+ ...+.+++++||.+...   ..|...+
T Consensus        76 ~~~~~L~~i~hP~v~~~~~~~~~--~~~~-~~~vi~e~pLL------~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s  146 (196)
T PRK14732         76 EKLKALNELIHPLVRKDFQKILQ--TTAE-GKLVIWEVPLL------FETDAYTLCDATVTVDSDPEESILRTISRDGMK  146 (196)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH--HHhc-CCcEEEEeeee------eEcCchhhCCEEEEEECCHHHHHHHHHHcCCCC
Confidence                  122222222    2222  1112 23444444433      22111 13577999999998642   2454557


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      .+.+.+|+..-   . +..+.-...+  ++|+.+.+.+++..++...+...+++
T Consensus       147 ~e~a~~ri~~Q---~-~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~~~~~~  194 (196)
T PRK14732        147 KEDVLARIASQ---L-PITEKLKRAD--YIVRNDGNREGLKEECKILYSTLLKK  194 (196)
T ss_pred             HHHHHHHHHHc---C-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHHHh
Confidence            78888888652   1 3333222222  45788999999999999887665554

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.61  E-value=1.8e-06  Score=83.94  Aligned_cols=164  Identities=13%  Similarity=0.174  Sum_probs=95.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-----hcCCccch-------
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-----SAGDFVNR-------  290 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-----~~G~~vPd-------  290 (520)
                      ..|.+|.|.|++||||||+|+.|++++ |+.+++++.+.+   +.... ++....+.+.+     .+|. +.-       
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~---~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~v   77 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISR---EITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAII   77 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHH---HHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHH
Confidence            346789999999999999999999887 999999999988   44332 22222233222     1221 111       


Q ss_pred             -----------HHHHHHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhhh-c--cC
Q psy11031        291 -----------DVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQ  351 (520)
Q Consensus       291 -----------~lv~~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R  351 (520)
                                 .++...+..++.+.  .. ...-+|+|- |      ..|+..+   ...+.|+++.||.+..- |  .|
T Consensus        78 F~d~~~~~~Le~i~HP~V~~~~~~~~~~~-~~~~vv~ei-p------LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~R  149 (204)
T PRK14733         78 TESKEAKKWLEDYLHPVINKEIKKQVKES-DTVMTIVDI-P------LLGPYNFRHYDYLKKVIVIKADLETRIRRLMER  149 (204)
T ss_pred             hCCHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCeEEEEe-c------hhhhccCchhhhCCEEEEEECCHHHHHHHHHHc
Confidence                       22222222222210  11 123455664 2      2233321   23577999999998643 2  45


Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHH
Q psy11031        352 IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKI  406 (520)
Q Consensus       352 ~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~  406 (520)
                      ..-+.+...+|+....    +..+.-+..+  .+||.+. +.+++.+++...+...
T Consensus       150 d~~s~~~a~~ri~~Q~----~~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        150 DGKNRQQAVAFINLQI----SDKEREKIAD--FVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             CCCCHHHHHHHHHhCC----CHHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence            4557778888876322    2222222222  4688888 9999888888766654

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.59  E-value=6.4e-07  Score=86.76  Aligned_cols=167  Identities=15%  Similarity=0.201  Sum_probs=101.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch--------------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR--------------  290 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd--------------  290 (520)
                      ..+|-|.|++||||||.|+.+++ + |++.++++++.|   +....+++....+.+.+...-.-++              
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r---~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~   76 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAR---EVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFN   76 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-c-CCeEEEccHHHH---HHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcC
Confidence            36799999999999999999988 7 999999999999   6666665555555544321111011              


Q ss_pred             ---------HHHHHHHHHHHhccccCC-CcEEEEeCCCCCHHHHHHHHhhcCC--CCCEEEecCChhhhh---ccCCCCC
Q psy11031        291 ---------DVVLDIVYAEMKKTKYTE-ADGIVIDGFPREMSQLIDFENKYQI--HPPMILIDCSKLVLH---KGQIDNS  355 (520)
Q Consensus       291 ---------~lv~~ll~~~l~~~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~--p~~VI~Ld~~~~~~~---r~R~dD~  355 (520)
                               .++..++...+. ..... ..+|++-       .+..|.+..+.  .+.||.++||+++.-   ..|..++
T Consensus        77 ~~~~~~~Le~i~hPli~~~~~-~~~~~~~~~~~~~-------eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~  148 (201)
T COG0237          77 DPEARLKLEKILHPLIRAEIK-VVIDGARSPYVVL-------EIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLD  148 (201)
T ss_pred             CHHHHHHHHHhhhHHHHHHHH-HHHHHhhCCceEE-------EchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCC
Confidence                     122222233321 01111 1223332       23334444332  467999999998632   2555677


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      .+.+..|+......    .+-+...+  ..+|++.+++...++|...+.......
T Consensus       149 ~e~~~~~~~~Q~~~----~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~~~~  197 (201)
T COG0237         149 EEDAEARLASQRDL----EEKLALAD--VVIDNDGSIENLLEQIEKLLKELLGLV  197 (201)
T ss_pred             HHHHHHHHHhcCCH----HHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHHhhh
Confidence            77777777643332    22233223  357999999998888888777765544

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.57  E-value=4.8e-07  Score=86.36  Aligned_cols=28  Identities=21%  Similarity=0.452  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      +|+|.|++||||||+|+.|++.+ |+..+
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~-~~~~~   28 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHL-GYEVV   28 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-CCccc
Confidence            48999999999999999999875 76443

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.54  E-value=1.1e-06  Score=80.39  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc----hHHHHHHHHHHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN----RDVVLDIVYAEMK  302 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP----d~lv~~ll~~~l~  302 (520)
                      +|+|.|+|||||||+|+.|++.+ ++.+++.+++..   ...          ...+..|...+    ......+......
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLHP---PAN----------IAKMAAGIPLNDEDRWPWLQALTDALLA   66 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCccccc---HHH----------HHHHHcCCCCCccchhhHHHHHHHHHHH
Confidence            47999999999999999999997 999999877654   211          00111121111    1222222222222


Q ss_pred             cccc-CCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhh
Q psy11031        303 KTKY-TEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVL  347 (520)
Q Consensus       303 ~~~~-~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~  347 (520)
                        .. ..+.++|+|.--........+.... +.+..+|+++|+.+..
T Consensus        67 --~l~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~  111 (150)
T cd02021          67 --KLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVL  111 (150)
T ss_pred             --HHHhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHH
Confidence              11 2355788885334445555555543 2334589999998764

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.52  E-value=8.9e-07  Score=82.27  Aligned_cols=146  Identities=18%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             CCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccccCCCcEE
Q psy11031        234 PGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTKYTEADGI  312 (520)
Q Consensus       234 PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~~~~~~G~  312 (520)
                      |||||||+++.||+.+ |+..+++++++.   +.      .|..+.+++. .|+.-=-+.-.+++.+-+.      ..+.
T Consensus         1 ~GsGKStvg~~lA~~L-~~~fiD~D~~i~---~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~------~~~~   64 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRL-GRPFIDLDDEIE---ER------TGMSISEIFAEEGEEAFRELESEALRELLK------ENNC   64 (158)
T ss_dssp             TTSSHHHHHHHHHHHH-TSEEEEHHHHHH---HH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHC------SSSE
T ss_pred             CCCcHHHHHHHHHHHh-CCCccccCHHHH---HH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhc------cCcE
Confidence            7999999999999997 999999999998   33      2344555543 3431111222333333222      2244


Q ss_pred             EEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc------cCCCC-CHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031        313 VID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK------GQIDN-SVSAFRRRLELFRERTLPMLRAMDVETR  382 (520)
Q Consensus       313 ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r------~R~dD-~~e~~~~Rl~~f~~~~~~l~~~y~~~~~  382 (520)
                      ||.   |.+...+..+.|.+    ...||||+++.+.+.+      .|+-- .......-.+.+. ...++++.+   ..
T Consensus        65 VIa~GGG~~~~~~~~~~L~~----~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~---a~  136 (158)
T PF01202_consen   65 VIACGGGIVLKEENRELLKE----NGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-EREPLYEQA---AD  136 (158)
T ss_dssp             EEEE-TTGGGSHHHHHHHHH----HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHHHHHHHH---SS
T ss_pred             EEeCCCCCcCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHHHHHHhc---Ce
Confidence            443   47888887777773    3459999999875321      23211 1111111222222 334444433   32


Q ss_pred             EEEEECCCCH-HHHHHHHHHHHH
Q psy11031        383 LTIVDGDTQL-PQVREEFERVLK  404 (520)
Q Consensus       383 l~~IDa~~~~-e~V~~~I~~~I~  404 (520)
                       ++||.+..+ +++.++|.+.|+
T Consensus       137 -~~v~~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  137 -IVVDTDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             -EEEETSSCHHHHHHHHHHHHH-
T ss_pred             -EEEeCCCCCHHHHHHHHHHHhC
Confidence             468888777 999999887763

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.50  E-value=1.4e-06  Score=95.17  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY  263 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~  263 (520)
                      .+++|.|.||+||||||+|+.|++++ |+.+++.|+++|.
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~  321 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRA  321 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehH
Confidence            67899999999999999999999998 9999999999993

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.48  E-value=2.2e-06  Score=80.70  Aligned_cols=158  Identities=13%  Similarity=0.144  Sum_probs=79.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHH----HH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDV----VL  294 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~l----v~  294 (520)
                      ..|..|++.|+|||||||+|+.|++++.    +...++ ++-++   +.....             |.......    ..
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~-~d~~r---~~~~~~-------------~~~~~~~~~~~~~~   67 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD-GDELR---EILGHY-------------GYDKQSRIEMALKR   67 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe-cHHHH---hhcCCC-------------CCCHHHHHHHHHHH
Confidence            4577999999999999999999998761    245554 45556   322110             10001111    11


Q ss_pred             HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHH-HHHHHHHHhHHH
Q psy11031        295 DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRR-RLELFRERTLPM  373 (520)
Q Consensus       295 ~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~-Rl~~f~~~~~~l  373 (520)
                      ..+...+.    ..+..+|+||.-- ..+...+......+..+|||+|+.+.+.++-.  .. .... ..+.+.+....-
T Consensus        68 ~~l~~~l~----~~g~~VI~~~~~~-~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~--~~-l~~~~~~~~~~~~~~~~  139 (176)
T PRK05541         68 AKLAKFLA----DQGMIVIVTTISM-FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ--KG-LYTKALKGEIKNVVGVD  139 (176)
T ss_pred             HHHHHHHH----hCCCEEEEEeCCc-HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch--hh-HHHHHHcCcccccccCC
Confidence            12222222    2346788897531 22233333333344568999999876543211  00 0000 001111111111


Q ss_pred             HHHhhhCCCEEEEECC--CCHHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGD--TQLPQVREEFERVLKKI  406 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~--~~~e~V~~~I~~~I~~~  406 (520)
                      ..+|.... -++||.+  .+++++.+.|...+...
T Consensus       140 ~~~~~~~A-d~vI~~~~~~~~~~~v~~i~~~l~~~  173 (176)
T PRK05541        140 IPFDEPKA-DLVIDNSCRTSLDEKVDLILNKLKLR  173 (176)
T ss_pred             CcccCCCC-CEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            23443322 2456766  47888888777776543

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.48  E-value=9.8e-07  Score=96.41  Aligned_cols=145  Identities=12%  Similarity=0.095  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .|+|+|+|||||||+++.|++++ |+.++++++++.   +.      .|..+.+++. .|+..-.++-.+++++.+.   
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~l-g~~~id~D~~i~---~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~---   68 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVL-DLQFIDMDEEIE---RR------EGRSVRRIFEEDGEEYFRLKEKELLRELVE---   68 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc-CCeEEECcHHHH---HH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhh---
Confidence            59999999999999999999997 999999999887   32      2223334332 3442222233333333222   


Q ss_pred             cCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHHHHHHhHHHHHHhh
Q psy11031        306 YTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLELFRERTLPMLRAMD  378 (520)
Q Consensus       306 ~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~  378 (520)
                        ....+|-.|  .+.+..+.+.|.+     ..+|||+++.+.+.     ++|+--...  ..++....+   .-...|+
T Consensus        69 --~~~~Vis~Gggvv~~~~~r~~l~~-----~~vI~L~as~e~l~~Rl~~~~RPLl~~~--~e~l~~L~~---~R~~lY~  136 (488)
T PRK13951         69 --RDNVVVATGGGVVIDPENRELLKK-----EKTLFLYAPPEVLMERVTTENRPLLREG--KERIREIWE---RRKQFYT  136 (488)
T ss_pred             --cCCEEEECCCccccChHHHHHHhc-----CeEEEEECCHHHHHHHhccCCCCCcccc--HHHHHHHHH---HHHHHHh
Confidence              112222233  2334455555543     34999999987642     234311110  122222222   2234554


Q ss_pred             hCCCEEEEECCC-CHHHHHHHH
Q psy11031        379 VETRLTIVDGDT-QLPQVREEF  399 (520)
Q Consensus       379 ~~~~l~~IDa~~-~~e~V~~~I  399 (520)
                      +   +..||.+. +++++.++|
T Consensus       137 ~---~~~IDt~~~s~~e~~~~i  155 (488)
T PRK13951        137 E---FRGIDTSKLNEWETTALV  155 (488)
T ss_pred             c---ccEEECCCCCHHHHHHHH
Confidence            3   24688764 466665544

>TIGR00017 cmk cytidylate kinase

Probab=98.48  E-value=6.5e-07  Score=87.81  Aligned_cols=37  Identities=19%  Similarity=0.457  Sum_probs=34.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +.+|.|.||+||||||+++.|++++ |+.+++.|+++|
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~-~~~~~~~g~~~r   38 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKL-GYAYLDSGAMYR   38 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-CCceeeCchHHH
Confidence            3679999999999999999999998 999999999987

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13973 thymidylate kinase; Provisional

Probab=98.47  E-value=1.7e-06  Score=84.45  Aligned_cols=143  Identities=11%  Similarity=0.077  Sum_probs=95.8

Q ss_pred             ccCcccCcHHHHHHHHHHccCCCCCC-----------CCHHHHHHHHHHHHhcCCC--CCcEE-----EeCCCCCHH--h
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEVKDFSF-----------LSSKTVTEVLMLEMKMSPA--AKAFL-----ISGYPRNMR--D   71 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~~~g~l-----------VPdelv~~ll~~~l~~~~~--~~G~I-----LDGFPRt~~--Q   71 (520)
                      ...|.....|+.++.++..+... .+           .+.+.+.++|...+....-  ...|+     .+|+++...  +
T Consensus        37 ~~~p~~~~~g~~ir~~l~~~~~~-~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~  115 (213)
T PRK13973         37 TREPGGSPGAEAIRHVLLSGAAE-LYGPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPAL  115 (213)
T ss_pred             EECCCCCchHHHHHHHHcCCCcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHH
Confidence            34566677899999988764210 01           1224445556666653221  34455     788888654  5


Q ss_pred             HHHHHHh---cCCcCEEEEEEcCHHHHHHHh-hhCccC--Cccc---hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeC
Q psy11031         72 VVEYSDK---IKTINGVILIAWRQSLLERQI-DYGAKL--GHVI---LSLARMELANFYQNVTPVTDFFDQRGMLIAVNG  142 (520)
Q Consensus        72 A~~~~~~---~~~pd~VI~L~~pd~~l~~Rl-~rg~~~--~r~d---~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida  142 (520)
                      +..+...   ...||+||+|+||.+++.+|+ .|+...  .|.+   .+..+++.+.|.+..    +.|.  +.++.|||
T Consensus       116 ~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida  189 (213)
T PRK13973        116 LAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDA  189 (213)
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcC
Confidence            5444432   257999999999999999999 454321  3443   456677888888733    4454  34899999


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q psy11031        143 ERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       143 ~~~~eeV~~~i~~~l~~~~  161 (520)
                      ++++++|+.+|..++...+
T Consensus       190 ~~~~e~V~~~I~~~i~~~~  208 (213)
T PRK13973        190 TASPEAVAAEIWAAVDQRL  208 (213)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998765

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.47  E-value=3.4e-06  Score=80.82  Aligned_cols=162  Identities=16%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchHH---
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRDV---  292 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~l---  292 (520)
                      .++.|+|+||+||||+|++++|.+.++++ +.++..--|   . ...+..-        -+.....+..|+.+--..   
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR---~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g   77 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTR---A-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD   77 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCC---C-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence            47889999999999999999999987554 455544444   1 1122111        123444444444332210   


Q ss_pred             -----HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hh-hh--ccCCCCCHHHHHHHH
Q psy11031        293 -----VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LV-LH--KGQIDNSVSAFRRRL  363 (520)
Q Consensus       293 -----v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~-~~--r~R~dD~~e~~~~Rl  363 (520)
                           -.+-+...+.     .++.+|+|--+..   +..+.+.+.....+||+.+|. +. ..  +.|..++.+.+++|+
T Consensus        78 ~~YGt~~~~i~~~~~-----~g~~~i~d~~~~g---~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl  149 (186)
T PRK14737         78 NYYGTPKAFIEDAFK-----EGRSAIMDIDVQG---AKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRI  149 (186)
T ss_pred             eeecCcHHHHHHHHH-----cCCeEEEEcCHHH---HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence                 0122233333     4677899975444   444444433222578888865 32 22  356666888999999


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +......    + +...-.. +|+.+ +.++..+++.+.|..
T Consensus       150 ~~~~~e~----~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~  184 (186)
T PRK14737        150 ENGIIEL----D-EANEFDY-KIIND-DLEDAIADLEAIICG  184 (186)
T ss_pred             HHHHHHH----h-hhccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence            8643221    2 1111123 45556 888888888877653

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.43  E-value=3.3e-06  Score=84.22  Aligned_cols=162  Identities=15%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch---------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR---------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd---------  290 (520)
                      .+|.|.|+.||||||+++.|.+++ |++.|+++.+.+   +....+++....+.+.+.      +|. +.-         
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~-G~~viDaD~iar---~l~~~~~~~~~~i~~~Fg~~i~~~dg~-idR~~L~~~VF~   76 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEH-HIEVIDADLVVR---ELQAPNMACTRKIAARWPLCVHPETGE-LNRAELGKIIFS   76 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-CCeEEehHHHHH---HHHcCChHHHHHHHHHhchhhcCCCCc-CCHHHHHHHHhC
Confidence            479999999999999999999987 999999999999   555566555555554431      222 111         


Q ss_pred             ---------HHHHHHHH----HHHhcc-------cc-CC-CcEEEEeCCCCCHHHHHHHHhhc--CCCCCEEEecCChhh
Q psy11031        291 ---------DVVLDIVY----AEMKKT-------KY-TE-ADGIVIDGFPREMSQLIDFENKY--QIHPPMILIDCSKLV  346 (520)
Q Consensus       291 ---------~lv~~ll~----~~l~~~-------~~-~~-~~G~ILDGFPrt~~Qae~l~~~~--~~p~~VI~Ld~~~~~  346 (520)
                               .++...+.    +++.+.       .. .. ..-+|+|.       +..||..+  ..++.+++++|+.+.
T Consensus        77 d~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-------PLL~E~~~~~~~~D~iv~V~a~~e~  149 (244)
T PTZ00451         77 DAQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-------PTLFETKTFTYFVSASVVVSCSEER  149 (244)
T ss_pred             CHHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-------chhhccCchhhcCCeEEEEECCHHH
Confidence                     11111111    112100       00 01 12456664       12234322  135789999999986


Q ss_pred             hh---ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC--CCHHHHHHHHHHHHHH
Q psy11031        347 LH---KGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGD--TQLPQVREEFERVLKK  405 (520)
Q Consensus       347 ~~---r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~--~~~e~V~~~I~~~I~~  405 (520)
                      ..   ..|...+.+.+++|+..   +. +..+ ...... .+|+.+  .+.+++.+++...+..
T Consensus       150 ri~RL~~R~g~s~eea~~Ri~~---Q~-~~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        150 QIERLRKRNGFSKEEALQRIGS---QM-PLEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAW  207 (244)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHh---CC-CHHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence            42   24545577888888864   21 1222 222222 357778  8999999999887644

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.40  E-value=5.1e-06  Score=80.43  Aligned_cols=38  Identities=18%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY  263 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~  263 (520)
                      ..+|.|-||.||||||+|+.||+++ ||.|+++|.++|.
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~L-g~~yldTGamYRa   41 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKL-GFHYLDTGAMYRA   41 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHh-CCCeecccHHHHH
Confidence            3789999999999999999999998 9999999999993

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.39  E-value=7.7e-06  Score=79.23  Aligned_cols=41  Identities=17%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr  262 (520)
                      ..++.+|.|.|++||||||+|+.|++.+.  .+..++.++.+.
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            35789999999999999999999999861  345678877665

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.37  E-value=6.8e-06  Score=87.68  Aligned_cols=173  Identities=14%  Similarity=0.200  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc------CCccch---------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA------GDFVNR---------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~------G~~vPd---------  290 (520)
                      .+|.|.|++||||||+|+.|++ + |+..|+++.+.+   +....++..-..+.+.+..      |. +.-         
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~-G~~vidaD~i~~---~l~~~~~~~~~~i~~~fG~~il~~~G~-idr~~L~~~vF~   75 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-L-GAVVVDADVLAR---EVVEPGTEGLAALVAAFGDDILLADGA-LDRPALAAKAFA   75 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-CCeEEehHHHHH---HHhcCChHHHHHHHHHhChHhcCCCCc-CCHHHHHHHHhC
Confidence            3699999999999999999987 6 999999999998   5554444333333333321      21 111         


Q ss_pred             ---------HHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031        291 ---------DVVLDIVYAEMKKT-KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVS  357 (520)
Q Consensus       291 ---------~lv~~ll~~~l~~~-~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e  357 (520)
                               .++...+..++.+. ....+..+|+.+-|.=.+-  .+.   ...+.+|+++||.+.+. |  .|..-+.+
T Consensus        76 ~~~~~~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~~---~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~  150 (395)
T PRK03333         76 DDEARAVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GMA---PLFHLVVVVDADVEVRVRRLVEQRGMAEA  150 (395)
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cch---hhCCEEEEEECCHHHHHHHHHhcCCCCHH
Confidence                     12222222222210 0112345777665532111  011   12467999999998642 1  22233444


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11031        358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTAR  415 (520)
Q Consensus       358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~~~~  415 (520)
                      ....|+.....    . +...... -++|+.+.+.+++..++...+...+.....+.+
T Consensus       151 ~a~~ri~~Q~~----~-e~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~  202 (395)
T PRK03333        151 DARARIAAQAS----D-EQRRAVA-DVWLDNSGTPDELVEAVRALWADRLLPFAHNLR  202 (395)
T ss_pred             HHHHHHHhcCC----h-HHHHHhC-CEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            44555543211    1 1111111 256889999999999999888887766555444

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.33  E-value=5.8e-06  Score=91.98  Aligned_cols=164  Identities=11%  Similarity=0.072  Sum_probs=86.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCC------eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHH
Q psy11031        219 SVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW------TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDV  292 (520)
Q Consensus       219 ~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~------~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~l  292 (520)
                      +++...+..|+|+|.|||||||+|+.|++.+ +.      .+++. |.+|   +....+......-+          +..
T Consensus       386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L-~~~~g~~~~~lD~-D~vr---~~l~ge~~f~~~er----------~~~  450 (568)
T PRK05537        386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKL-MEMRGRPVTLLDG-DVVR---KHLSSELGFSKEDR----------DLN  450 (568)
T ss_pred             ccccCCCeEEEEECCCCChHHHHHHHHHHHh-hhccCceEEEeCC-cHHH---HhccCCCCCCHHHH----------HHH
Confidence            4456778899999999999999999999987 75      56655 5667   33322111110000          011


Q ss_pred             HHHHH--HHHHhccccCCCcEEEEeC-CCCCH--HHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHH-HHHHHHH
Q psy11031        293 VLDIV--YAEMKKTKYTEADGIVIDG-FPREM--SQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAF-RRRLELF  366 (520)
Q Consensus       293 v~~ll--~~~l~~~~~~~~~G~ILDG-FPrt~--~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~-~~Rl~~f  366 (520)
                      +..+.  ...+    ...+.++|+|- ||...  .....+-+..+ ...+|||+++.+.+.++....   .+ +.+....
T Consensus       451 ~~~l~~~a~~v----~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr~---Ll~~~~~~~i  522 (568)
T PRK05537        451 ILRIGFVASEI----TKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRKG---LYAKAREGKI  522 (568)
T ss_pred             HHHHHHHHHHH----HhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcccc---ccccchhchh
Confidence            11111  1112    23567888885 55442  22222222111 124799999987653321110   11 1111222


Q ss_pred             HHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        367 RERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       367 ~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      +.....-..||....--++||.+ .+++++.+.|...|..
T Consensus       523 ~~l~~~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        523 KGFTGISDPYEPPANPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             hccccccccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            22211223466422223578877 5899999988877753

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.30  E-value=1.2e-05  Score=77.37  Aligned_cols=159  Identities=14%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc---hHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN---RDVVL  294 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP---d~lv~  294 (520)
                      ..+|.+|+|+|.+||||||+++.|+..+.    +..+++. +-++   ......  .          | +.+   .+.+.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~-d~~~---~~~~~~--~----------~-~~~~~~~~~~~   83 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG-DNVR---HGLCSD--L----------G-FSDADRKENIR   83 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC-EeHH---hhhhhc--C----------C-cCcccHHHHHH
Confidence            35688999999999999999999998641    3444544 3333   111110  0          0 111   12222


Q ss_pred             HHHHHHHhccccCCCcEEEEeCCCC-CHHHHHHHHhhcCCCCC-EEEecCChhhhhccCCCCCHHHHH-HHHHHHHHHhH
Q psy11031        295 DIVYAEMKKTKYTEADGIVIDGFPR-EMSQLIDFENKYQIHPP-MILIDCSKLVLHKGQIDNSVSAFR-RRLELFRERTL  371 (520)
Q Consensus       295 ~ll~~~l~~~~~~~~~G~ILDGFPr-t~~Qae~l~~~~~~p~~-VI~Ld~~~~~~~r~R~dD~~e~~~-~Rl~~f~~~~~  371 (520)
                      .+... ..  ........||..|.. ...+.+.+.+.+..... +|||+|+.+.+.++  +. ...+. .|...+.. ..
T Consensus        84 ~l~~~-a~--~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R--~~-r~l~~~~~~~~~~~-l~  156 (198)
T PRK03846         84 RVGEV-AK--LMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR--DP-KGLYKKARAGEIRN-FT  156 (198)
T ss_pred             HHHHH-HH--HHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc--Cc-hhHHHHhhcCCccC-cc
Confidence            22111 11  111223456667765 34555666666655454 79999999876443  11 11111 11111111 11


Q ss_pred             HHHHHhh--hCCCEEEEEC-CCCHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMD--VETRLTIVDG-DTQLPQVREEFERVLKK  405 (520)
Q Consensus       372 ~l~~~y~--~~~~l~~IDa-~~~~e~V~~~I~~~I~~  405 (520)
                      .....|+  .... ++||. +.+++++.++|...|.+
T Consensus       157 ~~r~~Y~~p~~ad-~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        157 GIDSVYEAPESPE-IHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             cccccCCCCCCCC-EEEECCCCCHHHHHHHHHHHHHH
Confidence            1222355  2222 56884 67899999988887753

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.29  E-value=6.5e-06  Score=77.41  Aligned_cols=160  Identities=10%  Similarity=0.082  Sum_probs=78.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH--HH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD--IV  297 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~--ll  297 (520)
                      .+.+|+|.|.|||||||+|+.|+..+.    ++.+++.+.+ +   +....+.....        ..  .+..+..  .+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~---~~~~~~~~~~~--------~~--r~~~~~~~~~~   68 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-R---TNLSKGLGFSK--------ED--RDTNIRRIGFV   68 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-H---HHHhcCCCCCh--------hh--HHHHHHHHHHH
Confidence            467899999999999999999998641    2455665433 4   22111110000        00  0011111  11


Q ss_pred             HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHH-HHHHHHHHHhHHHHHH
Q psy11031        298 YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFR-RRLELFRERTLPMLRA  376 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~-~Rl~~f~~~~~~l~~~  376 (520)
                      ...+.    ..+..+|+|+.-......+.+.... ....+|+|+|+.+.+.++.   ....++ .|.+........-..+
T Consensus        69 a~~~~----~~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~~e~~~~R~---~~~l~~~~~~~~i~~~~~~~~~~  140 (175)
T PRK00889         69 ANLLT----RHGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAPLEVCEQRD---VKGLYAKARAGEIKHFTGIDDPY  140 (175)
T ss_pred             HHHHH----hCCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCCHHHHHHhC---cccHHHHHHcCCCCCCcccCCCC
Confidence            22122    2345677776422234444444433 2345899999988654332   111111 1111111000111234


Q ss_pred             hhh-CCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        377 MDV-ETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       377 y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      |.. ...+.......+++++.++|...|..
T Consensus       141 ~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        141 EPPLNPEVECRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            432 12344334556899998888887753

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.28  E-value=1.2e-05  Score=75.35  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             EcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHHHHHHHHHhccccC
Q psy11031        231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVLDIVYAEMKKTKYT  307 (520)
Q Consensus       231 lG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~~ll~~~l~~~~~~  307 (520)
                      +|++||||||+++.|++.+ |..+++.+.+..   ...         +.. +..|....+.   .....+..........
T Consensus         1 ~G~sGsGKSTla~~la~~l-~~~~~~~d~~~~---~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   66 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-HAAFLDGDFLHP---RRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRT   66 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-CCeEEeCccCCc---hhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHc
Confidence            5999999999999999997 999998854421   000         000 0111111110   1111111111100111


Q ss_pred             CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHHHHHHhHHHHHHhh-hCCCE
Q psy11031        308 EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLELFRERTLPMLRAMD-VETRL  383 (520)
Q Consensus       308 ~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~-~~~~l  383 (520)
                      ...++|+-.|.+ ..+.+.+.+ ...+..+|+|+|+.+.+.   +.|..+ .    .+.+.+..+...+ +-+. ....+
T Consensus        67 ~~~~viv~s~~~-~~~r~~~~~-~~~~~~~v~l~a~~~~l~~Rl~~R~~~-~----a~~~vl~~Q~~~~-ep~~~~e~~~  138 (163)
T PRK11545         67 NKVSLIVCSALK-KHYRDLLRE-GNPNLSFIYLKGDFDVIESRLKARKGH-F----FKTQMLVTQFETL-QEPGADETDV  138 (163)
T ss_pred             CCceEEEEecch-HHHHHHHHc-cCCCEEEEEEECCHHHHHHHHHhccCC-C----CCHHHHHHHHHHc-CCCCCCCCCE
Confidence            234455544432 233333333 444556899999998643   234333 1    1444444443222 2221 11247


Q ss_pred             EEEECCCCHHHHHHHHHHHHH
Q psy11031        384 TIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       384 ~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      +.||++.+++++...+...+.
T Consensus       139 ~~id~~~~~~~~~~~~~~~~~  159 (163)
T PRK11545        139 LVVDIDQPLEGVVASTIEVIK  159 (163)
T ss_pred             EEEeCCCCHHHHHHHHHHHHH
Confidence            889999999988888877774

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.28  E-value=1.8e-06  Score=98.69  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY  263 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~  263 (520)
                      +|.|.|||||||||+|+.|++++ |+.++++|.++|.
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l-~~~~~~~g~~~r~   38 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYL-GYAYLDTGAMYRA   38 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCcEeecCcEeHH
Confidence            69999999999999999999998 9999999999993

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.28  E-value=7.1e-06  Score=78.22  Aligned_cols=147  Identities=14%  Similarity=0.251  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch----------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR----------  290 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd----------  290 (520)
                      +|.|.|+.||||||.|+.|++ + |+..++++++.+   +....+++....+.+.+.      +|..-..          
T Consensus         2 iIglTG~igsGKStv~~~l~~-~-G~~vidaD~i~~---~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~   76 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-L-GFPVIDADEIAH---ELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP   76 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-T-T-EEEEHHHHHH---HCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-C-CCCEECccHHHH---HHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence            689999999999999999988 6 999999999999   666666666666655432      2321111          


Q ss_pred             -------HHHHHH----HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhh-hc--cCCCCC
Q psy11031        291 -------DVVLDI----VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVL-HK--GQIDNS  355 (520)
Q Consensus       291 -------~lv~~l----l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~-~r--~R~dD~  355 (520)
                             .++..+    +..++.  ......-+|+|. |-=      |+..+ ...+.|+++.||.+.. .|  .|..-+
T Consensus        77 ~~~~~L~~iihP~I~~~~~~~~~--~~~~~~~~v~e~-pLL------~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~  147 (180)
T PF01121_consen   77 EKLKKLENIIHPLIREEIEKFIK--RNKSEKVVVVEI-PLL------FESGLEKLCDEVIVVYAPEEIRIKRLMERDGLS  147 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--HCHSTSEEEEE--TTT------TTTTGGGGSSEEEEEE--HHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHH--hccCCCEEEEEc-chh------hhhhHhhhhceEEEEECCHHHHHHHHHhhCCCc
Confidence                   122222    233333  222235566664 211      11111 2257799999998763 22  344556


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP  393 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e  393 (520)
                      .+.+.+|+..-.    +..+.-+..+  .+|+.+.+.+
T Consensus       148 ~~~~~~ri~~Q~----~~~~k~~~ad--~vI~N~g~~~  179 (180)
T PF01121_consen  148 EEEAEARIASQM----PDEEKRKRAD--FVIDNNGSLE  179 (180)
T ss_dssp             HHHHHHHHHTS------HHHHHHH-S--EEEE-SSHHH
T ss_pred             HHHHHHHHHhCC----CHHHHHHhCC--EEEECCCCCC
Confidence            777777776322    2222222222  3577777755

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00235 udk uridine kinase

Probab=98.27  E-value=9.1e-06  Score=78.77  Aligned_cols=42  Identities=19%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR  262 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr  262 (520)
                      .++.+.+|.|.|++||||||+++.|+..+.  .+..++.++.+.
T Consensus         2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~   45 (207)
T TIGR00235         2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK   45 (207)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence            456678999999999999999999998762  356777766543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.26  E-value=1.1e-05  Score=76.58  Aligned_cols=158  Identities=12%  Similarity=0.061  Sum_probs=81.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC--C--CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---HHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--N--WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---DVVLD  295 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g--~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---~lv~~  295 (520)
                      ..+.+|+|.|+|||||||+++.|+..+.  |  ..+++. +-++   .....+.             .+.+.   ..+..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~-d~~r---~~l~~~~-------------~~~~~~~~~~~~~   78 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG-DNVR---HGLNKDL-------------GFSEEDRKENIRR   78 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC-hHHH---hhhcccc-------------CCCHHHHHHHHHH
Confidence            4578999999999999999999998741  2  344544 4444   2221111             01111   11111


Q ss_pred             HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCC-CCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH-PPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p-~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      +. .... .....+..+|+|..-....+.+.+....... ..+|+|+|+.+.+.++  +...-..+.+...+... ....
T Consensus        79 ~~-~~~~-~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R--~~~~l~~~~~~~~~~~l-~~~~  153 (184)
T TIGR00455        79 IG-EVAK-LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR--DPKGLYKKARNGEIKGF-TGID  153 (184)
T ss_pred             HH-HHHH-HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh--CchhHHHHHhcCCccCc-cccc
Confidence            11 1111 0123467889997433455555555544432 3479999998865433  11110111111111111 1122


Q ss_pred             H-HhhhCCCEEEEECC-CCHHHHHHHHHHH
Q psy11031        375 R-AMDVETRLTIVDGD-TQLPQVREEFERV  402 (520)
Q Consensus       375 ~-~y~~~~~l~~IDa~-~~~e~V~~~I~~~  402 (520)
                      . ||....--++||.+ .+++++.+.|...
T Consensus       154 ~~y~~p~~adl~Idt~~~~~~~~~~~i~~~  183 (184)
T TIGR00455       154 SPYEAPENPEVVLDTDQNDREECVGQIIEK  183 (184)
T ss_pred             CCCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence            2 34323334778865 5888888877654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.21  E-value=5.2e-05  Score=72.02  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=100.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD----  291 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~----  291 (520)
                      ++..|+|.||.|+||||++++|.+..  -.++|++.-.|   . ...|..-        -+..+.+++.|+.+.=.    
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR---~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~g   76 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTR---K-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHG   76 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccC---C-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcC
Confidence            46789999999999999999999985  45566665555   2 2223222        23555666666543310    


Q ss_pred             -H---HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhh----hhccCCCCCHHHHHHHH
Q psy11031        292 -V---VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV----LHKGQIDNSVSAFRRRL  363 (520)
Q Consensus       292 -l---v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~----~~r~R~dD~~e~~~~Rl  363 (520)
                       .   -..-++..+.     .++.+|||=   ++.=|....+.++ +-..|||.+|...    +.++|..|+.+.+++|+
T Consensus        77 nyYGT~~~~ve~~~~-----~G~~vildI---d~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl  147 (191)
T COG0194          77 NYYGTSREPVEQALA-----EGKDVILDI---DVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTDSEEVIARRL  147 (191)
T ss_pred             CcccCcHHHHHHHHh-----cCCeEEEEE---ehHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHH
Confidence             0   1122233333     456677762   2444555555543 2336888887743    23478899999999999


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      ...+.......+ |+    .+.  -+.+.+..++++.+.|...
T Consensus       148 ~~a~~Ei~~~~~-fd----yvi--vNdd~e~a~~~l~~ii~ae  183 (191)
T COG0194         148 ENAKKEISHADE-FD----YVI--VNDDLEKALEELKSIILAE  183 (191)
T ss_pred             HHHHHHHHHHHh-CC----EEE--ECccHHHHHHHHHHHHHHH
Confidence            988877654433 43    222  4567778888888877654

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.21  E-value=9.8e-06  Score=91.97  Aligned_cols=172  Identities=16%  Similarity=0.216  Sum_probs=92.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhc-ccccCCcch--HHHHh-------------hhhcCC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN-IEDDGEGLN--SRIKS-------------SVSAGD  286 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~-~~~~~t~~g--~~i~~-------------~l~~G~  286 (520)
                      ...++|.|.||+||||||+|+.|++++ |+.|+++|+++|...- ..+.+-.+.  ..+.+             .+-+|+
T Consensus       440 ~~~~~i~i~g~~~~gks~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (661)
T PRK11860        440 DRVPVICIDGPTASGKGTVAARVAEAL-GYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGE  518 (661)
T ss_pred             cCcceEEeeCCCCCCHHHHHHHHHHHh-CCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCe
Confidence            335689999999999999999999998 9999999999993210 111221111  11111             111232


Q ss_pred             ccch-----------------HHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc
Q psy11031        287 FVNR-----------------DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK  349 (520)
Q Consensus       287 ~vPd-----------------~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r  349 (520)
                      .+..                 ..+.+.|.....  ...+..++|+||=  +.-..     .+...+.=|||+++.+.+.+
T Consensus       519 ~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr--~~~~~~~~v~eGR--digtv-----v~p~a~~kifl~a~~~~Ra~  589 (661)
T PRK11860        519 DVTDAIRTEAAGMGASRVSALPAVRAALLALQR--SFRRLPGLVADGR--DMGTV-----IFPDAALKVFLTASAEARAE  589 (661)
T ss_pred             EchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHH--HHhhCCCEEEECC--CCccE-----ECCCCCeEEEEECChhHHHH
Confidence            2222                 122333333333  2333457899983  11100     11112345999999988765


Q ss_pred             cCCC--------CCHHHHHHHHH--HHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        350 GQID--------NSVSAFRRRLE--LFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       350 ~R~d--------D~~e~~~~Rl~--~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      +|.+        .+.+.+.+.+.  .+......+ .-+......+.||.+ .++++|.+.|.+.|..
T Consensus       590 Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        590 RRYKQLISKGISANIADLLADLEARDARDTQRSV-APLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCC-CCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence            4422        12222222221  111111111 111122345778876 4999999999888753

>PRK06547 hypothetical protein; Provisional

Probab=98.20  E-value=3e-06  Score=80.21  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=36.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ...+.+|.|.|++||||||+|+.|++.+ ++..++++++..
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~   51 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYP   51 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceec
Confidence            3457889999999999999999999997 999999998877

>PRK01184 hypothetical protein; Provisional

Probab=98.18  E-value=6.2e-05  Score=71.28  Aligned_cols=142  Identities=11%  Similarity=0.035  Sum_probs=94.3

Q ss_pred             ccCcccCcHHHHHHHHHHc-cCCC-------------CCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH
Q psy11031         12 LDFPSHRNPLKMFNLFVSE-EVKD-------------FSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD   77 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~-G~~~-------------g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~   77 (520)
                      ++++ |+++|+.++..+.+ |...             ..+.+ .++..++..++.. .+...+|+||| |+..|+..+.+
T Consensus        24 ~g~~-~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~-~~~~~vvidg~-r~~~e~~~~~~   99 (184)
T PRK01184         24 MGIP-VVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGM-DAVAKRTVPKIRE-KGDEVVVIDGV-RGDAEVEYFRK   99 (184)
T ss_pred             cCCc-EEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHCh-HHHHHHHHHHHHh-cCCCcEEEeCC-CCHHHHHHHHH
Confidence            4677 89999999998854 3210             11222 3444555555643 35678999999 89999966655


Q ss_pred             hcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         78 KIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        78 ~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                      ......++|+++||+++..+|+. |+......+.+.+.+|+.....  .++-+.|....  +.||-+.+.++++++|..+
T Consensus       100 ~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~  175 (184)
T PRK01184        100 EFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKL  175 (184)
T ss_pred             hCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHH
Confidence            54446789999999999999994 4321111236667777765432  33555664443  4456667899999999998


Q ss_pred             HHHHh
Q psy11031        157 VLKIL  161 (520)
Q Consensus       157 l~~~~  161 (520)
                      +..++
T Consensus       176 ~~~~~  180 (184)
T PRK01184        176 LERIL  180 (184)
T ss_pred             HHHHh
Confidence            87655

>PRK08356 hypothetical protein; Provisional

Probab=98.17  E-value=2.3e-05  Score=75.25  Aligned_cols=120  Identities=13%  Similarity=0.168  Sum_probs=76.3

Q ss_pred             HHHHccCCCCCCCCH----HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-
Q psy11031         26 LFVSEEVKDFSFLSS----KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-  100 (520)
Q Consensus        26 ~~i~~G~~~g~lVPd----elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-  100 (520)
                      .+++.|.    ++|+    +++++++.+++..  +. .|+|||| |+..|+..|...   ...||+|+||.+++.+|+. 
T Consensus        66 ~~~e~g~----~~~~~yG~~~~~~~~~~~~~~--~~-~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~  134 (195)
T PRK08356         66 NLIELGR----YLKEKYGEDILIRLAVDKKRN--CK-NIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRR  134 (195)
T ss_pred             cHHHHHH----HHHHhcCcHHHHHHHHHHhcc--CC-eEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHh
Confidence            5555666    8885    8888888888842  33 5999999 999999766542   2589999999999999994 


Q ss_pred             hCccCCcc---chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031        101 YGAKLGHV---ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI  160 (520)
Q Consensus       101 rg~~~~r~---d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~  160 (520)
                      |+.. .+.   +.+.+ +|+...........++...-. ++.+| +.+.+++.++|.+++..+
T Consensus       135 R~~~-~~~~~~~~e~~-~~~~~~~~~l~~~~~~~~~aD-~vI~N-~~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        135 RGAE-KDKGIKSFEDF-LKFDEWEEKLYHTTKLKDKAD-FVIVN-EGTLEELRKKVEEILREL  193 (195)
T ss_pred             cCCc-cccccccHHHH-HHHHHHHHHhhhhhhHHHhCc-EEEEC-CCCHHHHHHHHHHHHHHh
Confidence            5432 111   23333 233222222111112222122 33355 679999999999988753

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.13  E-value=1.2e-05  Score=77.28  Aligned_cols=158  Identities=20%  Similarity=0.253  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhh-HHhhhhcccccCCcchH---HHHhhhhcCCccchHHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGK-LLRYFANIEDDGEGLNS---RIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gd-Llr~~~~~~~~~t~~g~---~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      +.|++.|+|||||||.|+.|++.+-  ++..++.+. .++   -.. ....++.   ..++.+.       +-+..++..
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~---~i~-~DEslpi~ke~yres~~-------ks~~rlldS   70 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR---GIL-WDESLPILKEVYRESFL-------KSVERLLDS   70 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh---hee-cccccchHHHHHHHHHH-------HHHHHHHHH
Confidence            4689999999999999999887531  444444443 222   111 1111111   1111111       122234444


Q ss_pred             HHhccccCCCcEEEEeC--CCCC-HHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCC-HHHHHHHHHHHHHHhHH
Q psy11031        300 EMKKTKYTEADGIVIDG--FPRE-MSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNS-VSAFRRRLELFRERTLP  372 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDG--FPrt-~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~-~e~~~~Rl~~f~~~~~~  372 (520)
                      +++      +.-+|.|.  |=.. ..|..........+.+||++.|+.+++-+   .|..-- +|.+++-++.|.+- .+
T Consensus        71 alk------n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEeP-n~  143 (261)
T COG4088          71 ALK------NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEP-NP  143 (261)
T ss_pred             Hhc------ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCC-CC
Confidence            443      45567773  3222 33444444445566789999999986532   233322 44444434443322 11


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .. .++  .-+.+||......++.+.|++.+.
T Consensus       144 ~~-rWD--spll~id~~d~~t~~IDfiesvl~  172 (261)
T COG4088         144 DR-RWD--SPLLVIDDSDVSTEVIDFIESVLR  172 (261)
T ss_pred             Cc-ccc--CceEEEecccccccchhHHHHHHH
Confidence            11 111  246778866666677777777665

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.12  E-value=3e-05  Score=87.66  Aligned_cols=163  Identities=12%  Similarity=0.053  Sum_probs=84.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY  298 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~  298 (520)
                      .+|.+|++.|.|||||||+|+.|++++    .++.+++. |.+|   ..+..+......-+          ...+..+..
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r---~~l~~~~~~~~~~r----------~~~~~~l~~  523 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVR---HGLNRDLGFSDADR----------VENIRRVAE  523 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhh---hccCCCCCCCHHHH----------HHHHHHHHH
Confidence            458999999999999999999999884    13456665 5566   33221111111000          112222222


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC-CCCEEEecCChhhhhccCCCCCHHHH-HHHHHHHHHHhHHHH-H
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI-HPPMILIDCSKLVLHKGQIDNSVSAF-RRRLELFRERTLPML-R  375 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~-p~~VI~Ld~~~~~~~r~R~dD~~e~~-~~Rl~~f~~~~~~l~-~  375 (520)
                      ....  ....+..+|+|..--...+.+.+.+.... +..+|||+++.+.+.++  +. ...+ +.+...+... ..+. .
T Consensus       524 ~a~~--~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R--~~-r~L~~~~~~~~l~~l-~~~r~~  597 (632)
T PRK05506        524 VARL--MADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEAR--DP-KGLYAKARAGEIKNF-TGIDSP  597 (632)
T ss_pred             HHHH--HHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhh--CC-cchhhhccccccccc-cccccC
Confidence            1111  12235668888632223333444443332 33689999998875432  11 1122 1122222211 1111 2


Q ss_pred             HhhhCCCEEEEEC-CCCHHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDG-DTQLPQVREEFERVLKK  405 (520)
Q Consensus       376 ~y~~~~~l~~IDa-~~~~e~V~~~I~~~I~~  405 (520)
                      |+....--++||. +.+++++.+.|...|..
T Consensus       598 y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        598 YEAPENPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3321223467886 67899999998887754

>PRK12338 hypothetical protein; Provisional

Probab=98.11  E-value=0.00014  Score=75.02  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=35.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY  263 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~  263 (520)
                      .|.+|+|.|+|||||||+|+.||+++ |+.|+..+|.+|+
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l-~~~~~~~tD~~r~   41 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTL-NIKHLIETDFIRE   41 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHC-CCeEEccChHHHH
Confidence            47899999999999999999999997 9999988899983

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.11  E-value=2.2e-05  Score=74.49  Aligned_cols=165  Identities=18%  Similarity=0.271  Sum_probs=89.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc----hHHHHhhhhcCCccch--------HH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL----NSRIKSSVSAGDFVNR--------DV  292 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~----g~~i~~~l~~G~~vPd--------~l  292 (520)
                      ++.|+|+||+||||+|++++|.+.+++.....+..-.|.--.....|...    -+.+...+..|+.+--        -+
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            46799999999999999999999874332222222222000111112111    1233333333332221        00


Q ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh---ccCCCCCHHHHHHHHHHHHH
Q psy11031        293 VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH---KGQIDNSVSAFRRRLELFRE  368 (520)
Q Consensus       293 v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~~Rl~~f~~  368 (520)
                      ...-+...+.     .++..|||-=   .+-+..|... ...+.+||+.++. +.+.   ++|.+++.+.+.+|+.....
T Consensus        82 ~~~~i~~~~~-----~gk~~il~~~---~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~  152 (183)
T PF00625_consen   82 SKSAIDKVLE-----EGKHCILDVD---PEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEK  152 (183)
T ss_dssp             EHHHHHHHHH-----TTTEEEEEET---HHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHH
T ss_pred             ccchhhHhhh-----cCCcEEEEcc---HHHHHHHHhc-ccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            1122233333     4667888754   4455566655 4456689998765 3322   34556667778888876654


Q ss_pred             HhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        369 RTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       369 ~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ..    ++|.. -.. +|.. .+.++.+++|.+.|..
T Consensus       153 ~~----~~~~~-fd~-vi~n-~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  153 EF----EHYNE-FDY-VIVN-DDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             HH----GGGGG-SSE-EEEC-SSHHHHHHHHHHHHHH
T ss_pred             HH----hHhhc-CCE-EEEC-cCHHHHHHHHHHHHHh
Confidence            32    33432 223 3443 4899999999888865

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK03839 putative kinase; Provisional

Probab=98.10  E-value=4.3e-05  Score=72.14  Aligned_cols=128  Identities=12%  Similarity=0.110  Sum_probs=83.7

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHH--HHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEE
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSK--TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI   88 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPde--lv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L   88 (520)
                      -++++ |+++++.++..   +  -+...+++  .....+...+.......+||+|||...          ...++.+|+|
T Consensus        23 ~~~~~-~id~d~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~----------l~~~~~vi~L   86 (180)
T PRK03839         23 KLGYE-YVDLTEFALKK---G--IGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSH----------LLPVDYVIVL   86 (180)
T ss_pred             HhCCc-EEehhhhhhhc---C--CcccCChhhhcCHHHHHHHHHHhccCCCEEEEecccc----------ccCCCEEEEE
Confidence            35677 99999887642   2  12244443  334555555543223567999998652          2368999999


Q ss_pred             EcCHHHHHHHhh-hCccCCccc-hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031         89 AWRQSLLERQID-YGAKLGHVI-LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTAVLKIL  161 (520)
Q Consensus        89 ~~pd~~l~~Rl~-rg~~~~r~d-~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~~  161 (520)
                      +|+.+++.+|+. |+.  .|.+ .+.+..++..     .+++++|.+.+.++.||++ +++++|+.+|.+.+....
T Consensus        87 ~~~~~~~~~Rl~~R~~--~~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~  155 (180)
T PRK03839         87 RAHPKIIKERLKERGY--SKKKILENVEAELVD-----VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSGK  155 (180)
T ss_pred             ECCHHHHHHHHHHcCC--CHHHHHHHHHHHHHH-----HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence            999999999994 431  1211 1111222211     2456788888889999997 799999999999987543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.04  E-value=2.6e-06  Score=74.79  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |+|.|+|||||||+|+.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999984

...

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.03  E-value=3.3e-05  Score=89.32  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ..+|.|-|||||||||+|++||+++ |+.++++|.++|
T Consensus        34 ~~~i~idG~~gsGKst~~~~la~~l-~~~~~~~g~~yR   70 (863)
T PRK12269         34 TVIIALDGPAGSGKSSVCRLLASRL-GAQCLNTGSFYR   70 (863)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH
Confidence            3789999999999999999999998 999999999999

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.03  E-value=1.4e-05  Score=77.07  Aligned_cols=110  Identities=13%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCcc-------chHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFV-------NRDV  292 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~v-------Pd~l  292 (520)
                      ...|..+++.|+|||||||++..+.+.+  .++.+|+.+++-.    ..    +....+...  .....       -..+
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~----~~----p~~~~~~~~--~~~~~~~~~~~~a~~~   81 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ----FH----PDYDELLKA--DPDEASELTQKEASRL   81 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG----GS----TTHHHHHHH--HCCCTHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH----hc----cchhhhhhh--hhhhhHHHHHHHHHHH
Confidence            3678899999999999999999999985  5889999866543    22    111111110  00000       0124


Q ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCC---CCEEEecCChhh
Q psy11031        293 VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH---PPMILIDCSKLV  346 (520)
Q Consensus       293 v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p---~~VI~Ld~~~~~  346 (520)
                      ...++...+.     .+..+|+||--++...+..+.+.+...   -.++++.|+++.
T Consensus        82 ~~~~~~~a~~-----~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~  133 (199)
T PF06414_consen   82 AEKLIEYAIE-----NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPEL  133 (199)
T ss_dssp             HHHHHHHHHH-----CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHH
T ss_pred             HHHHHHHHHH-----cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHH
Confidence            4445555555     567899999877767666343333322   236778887754

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.02  E-value=1.2e-05  Score=64.32  Aligned_cols=23  Identities=30%  Similarity=0.635  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|++.|+|||||||+|+.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.96  E-value=0.00011  Score=75.34  Aligned_cols=39  Identities=13%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ..|.+|+|.|++||||||+|.+|++++ |+.++-..|.+|
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l-~~~~vi~~D~~r  128 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL-GIRSVIGTDSIR  128 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHH
Confidence            467899999999999999999999998 998543356666

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.94  E-value=0.00019  Score=73.35  Aligned_cols=139  Identities=16%  Similarity=0.159  Sum_probs=74.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ..+|+|.|++||||||+++.|.+ . |+..++-                              +|..++.+++.....  
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~~-~-g~~~~d~------------------------------~~~~L~~~l~~~~~~--   51 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALED-L-GYYCVDN------------------------------LPPSLLPKLVELLAQ--   51 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH-c-CCeEECC------------------------------cCHHHHHHHHHHHHh--
Confidence            46899999999999999999864 4 7655421                              222333333332111  


Q ss_pred             c-cCCCcEEEEeCCCC-----CHHHHHHHHhhcCCCCCEEEecCChhhhhc-------cCCCCCHHHHHHHHHHHHHHhH
Q psy11031        305 K-YTEADGIVIDGFPR-----EMSQLIDFENKYQIHPPMILIDCSKLVLHK-------GQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       305 ~-~~~~~G~ILDGFPr-----t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r-------~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      . ....--+++|---+     -.+....|.+. +....+|||+++.+.+.+       .|+--....+.+.+.   +...
T Consensus        52 ~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~-g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~---~eR~  127 (288)
T PRK05416         52 SGGIRKVAVVIDVRSRPFFDDLPEALDELRER-GIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIE---LERE  127 (288)
T ss_pred             cCCCCCeEEEEccCchhhHHHHHHHHHHHHHc-CCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHH---HHHh
Confidence            1 12234577775322     12334444443 334468999999986421       222111111112222   2222


Q ss_pred             HHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGD-TQLPQVREEFERVL  403 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I  403 (520)
                      .+..+|+..+  ++||.+ .+++++.+.|...+
T Consensus       128 ~l~pl~~~AD--ivIDTs~ls~~el~e~I~~~l  158 (288)
T PRK05416        128 LLAPLRERAD--LVIDTSELSVHQLRERIRERF  158 (288)
T ss_pred             hhhhHHHhCC--EEEECCCCCHHHHHHHHHHHH
Confidence            3333444333  467876 48999888887766

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.93  E-value=0.00017  Score=77.74  Aligned_cols=39  Identities=26%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ..|.+|+|.|+|||||||+|..|++++ |+.++-..|.+|
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~l-g~~~ii~tD~iR  291 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRL-GITRIVSTDAVR  291 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc-CCcEEeehhHHH
Confidence            458999999999999999999999997 998765556666

>KOG3220|consensus

Probab=97.88  E-value=0.00027  Score=67.83  Aligned_cols=158  Identities=18%  Similarity=0.290  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH-------------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV-------------  293 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv-------------  293 (520)
                      ++-+.|+-||||||+++.+. ++ |++.|+.+.+-|   +..+.|++....|.+.+...-+.++-.+             
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~-G~~vIDaD~vaR---~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~   77 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-AL-GIPVIDADVVAR---EVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDP   77 (225)
T ss_pred             EEEeecccccChHHHHHHHH-Hc-CCcEecHHHHHH---HHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCH
Confidence            57789999999999999876 66 999999999999   8889999999988887765544443111             


Q ss_pred             ---------------HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHh-hcCCCCCEEEecCChhh-hhc--cCCCC
Q psy11031        294 ---------------LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN-KYQIHPPMILIDCSKLV-LHK--GQIDN  354 (520)
Q Consensus       294 ---------------~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~-~~~~p~~VI~Ld~~~~~-~~r--~R~dD  354 (520)
                                     .+++++-+.  ....+..||+=.-|-      .||. .......++..-|+.+. +.|  .|..-
T Consensus        78 ~~r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPL------LFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~l  149 (225)
T KOG3220|consen   78 KKRQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPL------LFEAKLLKICHKTVVVTCDEELQLERLVERDEL  149 (225)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHH--HHhcCCeEEEEechH------HHHHhHHhheeeEEEEEECcHHHHHHHHHhccc
Confidence                           111111111  111223333322222      2332 11123345666676653 222  45556


Q ss_pred             CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      +++.-+.|+..-    .|+.+--+..  -++||.+.++++..++++..+
T Consensus       150 se~dAe~Rl~sQ----mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~  192 (225)
T KOG3220|consen  150 SEEDAENRLQSQ----MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVL  192 (225)
T ss_pred             cHHHHHHHHHhc----CCHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence            777777777632    3444433332  256899999999988887664

>PHA03132 thymidine kinase; Provisional

Probab=97.87  E-value=0.0001  Score=81.52  Aligned_cols=120  Identities=9%  Similarity=0.059  Sum_probs=65.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC---CccchHHHH------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG---DFVNRDVVL------  294 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G---~~vPd~lv~------  294 (520)
                      +..+|+|.|..||||||+++.|++.+ |...+-+.+=...+..   -.+..+..+.+.+.++   +..+...+.      
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~l-g~~Vi~t~EP~~~W~~---vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F  331 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGIL-GDNVLVFPEPMRYWTE---VYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF  331 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHh-CCceEEEeCCCCchhh---ccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence            36899999999999999999999986 6554433111100000   0124567777766543   222222221      


Q ss_pred             ----HHHHHHHhc------c---ccCCCcEEEEeCCCC-CHH-H---------------HHHHHhhc-CCCCCEEEecCC
Q psy11031        295 ----DIVYAEMKK------T---KYTEADGIVIDGFPR-EMS-Q---------------LIDFENKY-QIHPPMILIDCS  343 (520)
Q Consensus       295 ----~ll~~~l~~------~---~~~~~~G~ILDGFPr-t~~-Q---------------ae~l~~~~-~~p~~VI~Ld~~  343 (520)
                          .++..++..      .   ....++.+|+|+|+- +.. +               ...+.... ..|+.+|+|+++
T Consensus       332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~  411 (580)
T PHA03132        332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN  411 (580)
T ss_pred             hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence                111122110      0   113356789999873 322 1               12222222 246789999999


Q ss_pred             hhhh
Q psy11031        344 KLVL  347 (520)
Q Consensus       344 ~~~~  347 (520)
                      .+..
T Consensus       412 pe~a  415 (580)
T PHA03132        412 SEEN  415 (580)
T ss_pred             HHHH
Confidence            8753

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.83  E-value=7.6e-05  Score=71.60  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +|.|.|++||||||+|+.|++.+.++.+|+++++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence            478999999999999999999975799999999887

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.83  E-value=0.0001  Score=81.08  Aligned_cols=93  Identities=17%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ...|..|+++|+|||||||+|+.+++.. |+.+++.+.+ .   .                       -+.+...+...|
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-g~~~vn~D~l-g---~-----------------------~~~~~~~a~~~L  417 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-GYKHVNADTL-G---S-----------------------TQNCLTACERAL  417 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHc-CCeEECcHHH-H---H-----------------------HHHHHHHHHHHH
Confidence            4568899999999999999999999987 9999999654 3   1                       011233444555


Q ss_pred             hccccCCCcEEEEeCCCCCH---HHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031        302 KKTKYTEADGIVIDGFPREM---SQLIDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~---~Qae~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                      .     .++.+|||.--.+.   .....+.+..+.+-.++++++|.+.+
T Consensus       418 ~-----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~  461 (526)
T TIGR01663       418 D-----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQA  461 (526)
T ss_pred             h-----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH
Confidence            5     56789999855554   44444445555555689999998764

Note that the EC number for the kinase function is: 2.7.1.78

>PRK06696 uridine kinase; Validated

Probab=97.79  E-value=7.6e-05  Score=73.28  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr  262 (520)
                      ...|.+|.|.|++||||||+|+.|++.+.  |.  .++++++++.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            34688999999999999999999999752  33  4566888776

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.78  E-value=0.001  Score=62.20  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ++++++.|-||+||||+++...+...++..+..|+++-+.+ .....-+..+.++       -+|.+...++...+..  
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A-~k~glve~rD~~R-------klp~e~Q~~lq~~Aa~--   73 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIA-KKKGLVEHRDEMR-------KLPLENQRELQAEAAK--   73 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHH-HHhCCcccHHHHh-------cCCHHHHHHHHHHHHH--
Confidence            58899999999999999998877643677789999987211 1112222222332       3455544444433332  


Q ss_pred             ccCC-CcEEEEe---------CC-CCCHHHHHHHHhhcCCCCCEEEecCChhhh-h-------ccCCCCCHHHHHHHHHH
Q psy11031        305 KYTE-ADGIVID---------GF-PREMSQLIDFENKYQIHPPMILIDCSKLVL-H-------KGQIDNSVSAFRRRLEL  365 (520)
Q Consensus       305 ~~~~-~~G~ILD---------GF-Prt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-~-------r~R~dD~~e~~~~Rl~~  365 (520)
                      .... ..-+|+|         || |--..|.  |+.  ..|+.+++|+.+++.. .       |.|..++.+.++.-.+.
T Consensus        74 rI~~~~~~iivDtH~~IkTP~GylpgLP~~V--l~~--l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~  149 (189)
T COG2019          74 RIAEMALEIIVDTHATIKTPAGYLPGLPSWV--LEE--LNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEM  149 (189)
T ss_pred             HHHHhhhceEEeccceecCCCccCCCCcHHH--HHh--cCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence            1111 1127887         43 4444444  222  2367788888877643 2       23344455555443322


Q ss_pred             HHHHhHHHHHHhhhCC-CEEEE-ECCCCHHHHHHHHHHHHH
Q psy11031        366 FRERTLPMLRAMDVET-RLTIV-DGDTQLPQVREEFERVLK  404 (520)
Q Consensus       366 f~~~~~~l~~~y~~~~-~l~~I-Da~~~~e~V~~~I~~~I~  404 (520)
                      -+-.+.   .|--..+ .+..| |-+.++++-..+|...|.
T Consensus       150 nR~aA~---a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~  187 (189)
T COG2019         150 NRAAAM---AYAILLGATVKIVENHEGDPEEAAEEIVELLD  187 (189)
T ss_pred             HHHHHH---HHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence            111111   1111112 23333 455678887777777665

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.78  E-value=0.00018  Score=66.24  Aligned_cols=106  Identities=15%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      +|+|.|.|||||||+|+.|++.+.  |+  .+++ ++-++   +.......        +....  ..+.+..+.. ...
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~-~d~~r---~~l~~~~~--------~~~~~--~~~~~~~~~~-~a~   65 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVR---HGLNKDLG--------FSRED--REENIRRIAE-VAK   65 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc-CHHHH---HhhhhccC--------CCcch--HHHHHHHHHH-HHH
Confidence            488999999999999999998741  43  3343 35555   22211100        00000  0111212111 111


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhhh
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVLH  348 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~~  348 (520)
                      . ....+..+|+|.--....+...+.+... .+..+++++||.+.+.
T Consensus        66 ~-l~~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~  111 (149)
T cd02027          66 L-LADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCE  111 (149)
T ss_pred             H-HHhCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHH
Confidence            0 1123567888874334444444444332 2334799999987643

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.78  E-value=0.00028  Score=67.63  Aligned_cols=36  Identities=19%  Similarity=0.450  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr  262 (520)
                      +|.|.|++||||||+|+.|++.+.  +..+++++++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            478999999999999999998751  367888887765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.78  E-value=6.1e-05  Score=71.42  Aligned_cols=160  Identities=12%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc--hH---HHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN--RD---VVLDIVYA  299 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP--d~---lv~~ll~~  299 (520)
                      .+|+|.|++-|||||+|+.|.+.+. .|.|++++.+..   .........+.    -+.-+.-.|  ..   .+...+..
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~---~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~   74 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD---MMPPGRYRPGD----GLEPAGDRPDGGPLFRRLYAAMHA   74 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH---HS-GGGGTSTT----SEEEETTSEEE-HHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh---hcCcccccCCc----cccccccCCchhHHHHHHHHHHHH
Confidence            5799999999999999999999874 457899988877   32211100000    000000000  11   22233333


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHH-HHHHHhhcCCCC-CEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQ-LIDFENKYQIHP-PMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Q-ae~l~~~~~~p~-~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      .+. +....+..+|+|+...+..+ .+.+.+.+..-+ .+|-+.||.+.+.+   .|.|-... +. +. .|. ..-.- 
T Consensus        75 ~ia-a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G-~a-~~-q~~-~Vh~~-  148 (174)
T PF07931_consen   75 AIA-AMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG-LA-AW-QAE-HVHEG-  148 (174)
T ss_dssp             HHH-HHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT-HH-HH-HTT-GGGTT-
T ss_pred             HHH-HHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH-HH-HH-HHh-hcccC-
Confidence            333 13446789999998777676 445545554333 46778999986532   33332111 11 11 111 00000 


Q ss_pred             HHhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGD-TQLPQVREEFERVL  403 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I  403 (520)
                      ..|+     +.||.+ .++++..+.|.+.+
T Consensus       149 ~~YD-----leVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  149 GRYD-----LEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             ---S-----EEEETTSS-HHHHHHHHHTT-
T ss_pred             CCCC-----EEEECCCCCHHHHHHHHHHHh
Confidence            1132     568987 58888888887654

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>KOG3354|consensus

Probab=97.77  E-value=0.00038  Score=64.23  Aligned_cols=158  Identities=15%  Similarity=0.151  Sum_probs=87.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH----HHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD----VVLDIVY  298 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~----lv~~ll~  298 (520)
                      +.+-.|+|+|..||||||+++.|++++ |+..+.-+|+=-   .+          =.+-|..|-.+.|+    ++.++-.
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l-~~~F~dgDd~Hp---~~----------NveKM~~GipLnD~DR~pWL~~i~~   75 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEEL-GLKFIDGDDLHP---PA----------NVEKMTQGIPLNDDDRWPWLKKIAV   75 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHh-CCcccccccCCC---HH----------HHHHHhcCCCCCcccccHHHHHHHH
Confidence            445689999999999999999999997 999998877744   11          12335556665553    2222221


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC------CC---CCEEEecCChhhhh-c--cCCCC--CHHHHHHHHH
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ------IH---PPMILIDCSKLVLH-K--GQIDN--SVSAFRRRLE  364 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~------~p---~~VI~Ld~~~~~~~-r--~R~dD--~~e~~~~Rl~  364 (520)
                      ....  .....+|+||----.-..-...|...+.      .+   -.+|+|..+.+++. |  .|...  -.+-++..++
T Consensus        76 ~~~~--~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~  153 (191)
T KOG3354|consen   76 ELRK--ALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFA  153 (191)
T ss_pred             HHHH--HhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHH
Confidence            1112  2335778888643222222233333222      12   13788887776532 1  23221  1222221111


Q ss_pred             HHHHHhHHHHHHh-hhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031        365 LFRERTLPMLRAM-DVETRLTIVDGD-TQLPQVREEFERVLK  404 (520)
Q Consensus       365 ~f~~~~~~l~~~y-~~~~~l~~IDa~-~~~e~V~~~I~~~I~  404 (520)
                              .++.= .+...+++|+.+ .+++++...|...+.
T Consensus       154 --------~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~  187 (191)
T KOG3354|consen  154 --------TLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVA  187 (191)
T ss_pred             --------hccCCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence                    11111 112358899988 888887777665544

>KOG3877|consensus

Probab=97.75  E-value=0.00063  Score=68.09  Aligned_cols=171  Identities=14%  Similarity=0.218  Sum_probs=89.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee---hhhHHhhhhcccc----------cCCcchHHHHhhhh--cCCc
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS---LGKLLRYFANIED----------DGEGLNSRIKSSVS--AGDF  287 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is---~gdLlr~~~~~~~----------~~t~~g~~i~~~l~--~G~~  287 (520)
                      ...++|+|.|+-|||||++|+.||+++ |+.|+-   +++++-   ..-.          ..+...-.++.+..  +|+ 
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~L-gf~hfP~~~~d~iyv---dsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-  143 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQL-GFVHFPEFRMDDIYV---DSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-  143 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHh-CCcccccccccceee---cccCccchhccccCCcccCchhHHHhccCCCcc-
Confidence            346899999999999999999999997 999874   444432   1110          00111112222222  122 


Q ss_pred             cchHHHHHHHH-------HHHhccccCCCcEEEEeCCCCC-HHHHHHHHhh---------------------cCCCCCEE
Q psy11031        288 VNRDVVLDIVY-------AEMKKTKYTEADGIVIDGFPRE-MSQLIDFENK---------------------YQIHPPMI  338 (520)
Q Consensus       288 vPd~lv~~ll~-------~~l~~~~~~~~~G~ILDGFPrt-~~Qae~l~~~---------------------~~~p~~VI  338 (520)
                      ....+...+..       ++|+ +-+..++|+||+.-|-+ .-.++++...                     +..|-.||
T Consensus       144 lsa~~Q~r~y~~R~~QY~dAL~-HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLVi  222 (393)
T KOG3877|consen  144 LSAAMQDRIYNCRFDQYLDALA-HILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVI  222 (393)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH-HHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEE
Confidence            11122222211       1222 12346899999998843 4445544432                     12345699


Q ss_pred             EecCChhhhh---ccCC-CCCH-----HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC--CCHHHHHHHHHHH
Q psy11031        339 LIDCSKLVLH---KGQI-DNSV-----SAFRRRLELFRERTLPMLRAMDVETRLTIVDGD--TQLPQVREEFERV  402 (520)
Q Consensus       339 ~Ld~~~~~~~---r~R~-dD~~-----e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~--~~~e~V~~~I~~~  402 (520)
                      +||.|-....   ++|. ++..     ..++.--+.|+++   .+.-|+....++.-|..  ++.+.|.++|+.+
T Consensus       223 Yld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl  294 (393)
T KOG3877|consen  223 YLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIERL  294 (393)
T ss_pred             EEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence            9999875322   1222 2211     1222222233322   23445544455666755  5677788888765

>COG4639 Predicted kinase [General function prediction only]

Probab=97.74  E-value=0.00012  Score=67.59  Aligned_cols=106  Identities=22%  Similarity=0.316  Sum_probs=68.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      +..++++|+|||||||.|+..   ++....+|++++-+   ..       |....+....|   .+..+.+++...+++ 
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n---~~~~~~lsld~~r~---~l-------g~~~~~e~sqk---~~~~~~~~l~~~l~q-   64 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN---FLQNYVLSLDDLRL---LL-------GVSASKENSQK---NDELVWDILYKQLEQ-   64 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh---CCCcceecHHHHHH---Hh-------hhchhhhhccc---cHHHHHHHHHHHHHH-
Confidence            356899999999999999864   34678899877765   11       11111111111   234444455444442 


Q ss_pred             ccCCCcEEEEeCCC---CCHHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031        305 KYTEADGIVIDGFP---REMSQLIDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       305 ~~~~~~G~ILDGFP---rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                      ....++..|+|.+=   +++.+...|....+-...+|++|.|.+.+
T Consensus        65 rl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c  110 (168)
T COG4639          65 RLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELC  110 (168)
T ss_pred             HHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH
Confidence            23357889999985   66666667777776666689999998764

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.00029  Score=68.28  Aligned_cols=30  Identities=20%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      .++|+|.|+=|+||||+|+.|++++ |..++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l-~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHL-GFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHh-CCcee
Confidence            4679999999999999999999998 76555

>COG0645 Predicted kinase [General function prediction only]

Probab=97.72  E-value=0.00017  Score=67.56  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---HHHHHHHHHHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---DVVLDIVYAEMK  302 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---~lv~~ll~~~l~  302 (520)
                      ..+++.|.|||||||+|+.|++.+ |..+|+.+.+-+    .+.. -+..    .-...|-+-|.   .....++.....
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~l-gA~~lrsD~irk----~L~g-~p~~----~r~~~g~ys~~~~~~vy~~l~~~A~l   71 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELL-GAIRLRSDVIRK----RLFG-VPEE----TRGPAGLYSPAATAAVYDELLGRAEL   71 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhc-CceEEehHHHHH----HhcC-Cccc----ccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999997 999999966655    2211 0000    00112333332   222233322222


Q ss_pred             ccccCCCcEEEEeCCCCC---HHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031        303 KTKYTEADGIVIDGFPRE---MSQLIDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt---~~Qae~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                        ....+..+|||+-.-.   .+-+..+.+..+.+...|.++++.+++
T Consensus        72 --~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~  117 (170)
T COG0645          72 --LLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVL  117 (170)
T ss_pred             --HHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHH
Confidence              3446788999984333   333333333333334457777777764

>KOG3327|consensus

Probab=97.67  E-value=0.00045  Score=65.43  Aligned_cols=143  Identities=13%  Similarity=0.196  Sum_probs=97.2

Q ss_pred             ccccccccCc-ccCcHHHHHHHHHHccCCCCCCCCHHHH-----------HHHHHHHHhcCCCCCcEEEeCCCCCH---H
Q psy11031          6 LYATSLLDFP-SHRNPLKMFNLFVSEEVKDFSFLSSKTV-----------TEVLMLEMKMSPAAKAFLISGYPRNM---R   70 (520)
Q Consensus         6 ~~~~~~~~~~-~h~s~G~~l~~~i~~G~~~g~lVPdelv-----------~~ll~~~l~~~~~~~G~ILDGFPRt~---~   70 (520)
                      +-++.++.|| --+++|+++..|+.+-.    -+||+++           +.+|.+.+.+   ....|+|=|=-+=   .
T Consensus        33 ~~~~~l~~FP~Rst~iGk~i~~YL~k~~----dl~d~~iHLlFSAnRwe~~~~i~e~l~k---g~~~ivDRY~~SGvAyS  105 (208)
T KOG3327|consen   33 LDPAELLRFPERSTSIGKLIDGYLRKKS----DLPDHTIHLLFSANRWEHVSLIKEKLAK---GTTLIVDRYSFSGVAYS  105 (208)
T ss_pred             cChHHhhhcchhcccccHHHHHHHHhcc----CCcHHHHHHHhccchhhHHHHHHHHHhc---CCeEEEecceecchhhh
Confidence            3456788888 45678999999999998    8999875           3455565543   3346777665321   1


Q ss_pred             hHHHH--------HHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhC-CcEEEEe
Q psy11031         71 DVVEY--------SDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR-GMLIAVN  141 (520)
Q Consensus        71 QA~~~--------~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Id  141 (520)
                      -|+.+        ..-..+||+|++|+++.+.+.+|-+.|..  |.+..++.+|...|.+...      ++. -.++.||
T Consensus       106 ~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~E--rye~v~fqekv~~~~q~l~------r~e~~~~~~vD  177 (208)
T KOG3327|consen  106 AAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEE--RYETVAFQEKVLVFFQKLL------RKEDLNWHVVD  177 (208)
T ss_pred             hhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchh--HHHHHHHHHHHHHHHHHHH------hccCCCeEEEe
Confidence            11111        11224899999999999998887666543  3344455666555554433      322 2489999


Q ss_pred             CCCChHHHHHHHHHHHHHHhcc
Q psy11031        142 GERNPVEVYADFRTAVLKILNK  163 (520)
Q Consensus       142 a~~~~eeV~~~i~~~l~~~~~~  163 (520)
                      |.++.++|.++|..+++..+..
T Consensus       178 As~sve~V~~~V~~i~e~~~~~  199 (208)
T KOG3327|consen  178 ASKSVEKVHQQVRSLVENVLSE  199 (208)
T ss_pred             cCccHHHHHHHHHHHHHHhccC
Confidence            9999999999999999987733

>PRK07667 uridine kinase; Provisional

Probab=97.67  E-value=0.00012  Score=70.45  Aligned_cols=38  Identities=8%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      ..+|.|.|+|||||||+|+.|++.+    .+...+++++.+.
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~   58 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV   58 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence            4789999999999999999999864    1355889988776

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00016  Score=77.20  Aligned_cols=96  Identities=20%  Similarity=0.258  Sum_probs=59.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC---C-CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP---N-WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIV  297 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~---g-~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll  297 (520)
                      .+.+|+|+||+||||||+|.+|+..+.   | -+++...|..|   ...      ...++.+.+....  .+...+. .+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R---~aA------~eQLk~yAe~lgvp~~~~~~~~-~l  291 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR---IAA------IEQLKRYADTMGMPFYPVKDIK-KF  291 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh---hhH------HHHHHHHHHhcCCCeeehHHHH-HH
Confidence            457899999999999999999997541   2 25566667777   211      1234443333211  1111122 23


Q ss_pred             HHHHhccccCCCcEEEEe--CCC-CCHHHHHHHHhhcC
Q psy11031        298 YAEMKKTKYTEADGIVID--GFP-REMSQLIDFENKYQ  332 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILD--GFP-rt~~Qae~l~~~~~  332 (520)
                      ...+.  . .....+|||  |++ ++..|++.|.+.+.
T Consensus       292 ~~~l~--~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~  326 (432)
T PRK12724        292 KETLA--R-DGSELILIDTAGYSHRNLEQLERMQSFYS  326 (432)
T ss_pred             HHHHH--h-CCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence            33444  1 234679999  985 89999999887653

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.63  E-value=0.00018  Score=66.93  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr  262 (520)
                      +|.+|||.|.|||||||+|+.|.+++.  |.  .+++. |-+|
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR   42 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLR   42 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchh
Confidence            367899999999999999999988641  33  33443 6666

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.62  E-value=0.00016  Score=71.14  Aligned_cols=155  Identities=15%  Similarity=0.305  Sum_probs=82.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC-----eeeehhhHHhhhhccccc---------CCcchHHHHhhhhcCCcc
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-----TQISLGKLLRYFANIEDD---------GEGLNSRIKSSVSAGDFV  288 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-----~~is~gdLlr~~~~~~~~---------~t~~g~~i~~~l~~G~~v  288 (520)
                      ....+|+++|.|+.|||++|++|++.+ .|     ..+++|+.=|+   ....         .++.+..+++        
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL-~w~g~~~~vFn~g~yRR~---~~~~~~~~~ff~p~n~~~~~~R~--------   77 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYL-NWLGVKTKVFNVGDYRRK---LSGAPQDAEFFDPDNEEAKKLRE--------   77 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHH-HHTT--EEEEEHHHHHHH---HHSS-S-GGGGSTT-HHHHHHHH--------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCcceeecccceec---ccccccccccCCCCChHHHHHHH--------
Confidence            346789999999999999999999743 33     66789988883   2221         1122222222        


Q ss_pred             chHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecC--Chh-hhh------ccC-CC----
Q psy11031        289 NRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDC--SKL-VLH------KGQ-ID----  353 (520)
Q Consensus       289 Pd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~--~~~-~~~------r~R-~d----  353 (520)
                        ++....|.+-+.-.....+.--|+|+-=.|.+.-+.+.+.+.... .|+||++  ++. ++.      ... +|    
T Consensus        78 --~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~  155 (222)
T PF01591_consen   78 --QIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM  155 (222)
T ss_dssp             --HHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS
T ss_pred             --HHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC
Confidence              223233332222101234566899999999888887777665444 4888885  443 221      111 22    


Q ss_pred             ---CCHHHHHHHHHHHHHHhHHHHHHhhhC-CCEEEEECCCC
Q psy11031        354 ---NSVSAFRRRLELFRERTLPMLRAMDVE-TRLTIVDGDTQ  391 (520)
Q Consensus       354 ---D~~e~~~~Rl~~f~~~~~~l~~~y~~~-~~l~~IDa~~~  391 (520)
                         ...+.|.+|++.|.+...|+-+-.+.. ..+..||+...
T Consensus       156 ~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~~  197 (222)
T PF01591_consen  156 DPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGEK  197 (222)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTE
T ss_pred             CHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCCce
Confidence               124457889999999998886222221 23455665443

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.61  E-value=5.1e-05  Score=71.69  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr  262 (520)
                      +|+|+|+|||||||+|..++..+ +  +.+++++....
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~-~~~~~~iat~~~~~   39 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS-GLQVLYIATAQPFD   39 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc-CCCcEeCcCCCCCh
Confidence            69999999999999999999986 5  67888876665

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.61  E-value=0.00012  Score=76.48  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCC------CeeeehhhHHh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPN------WTQISLGKLLR  262 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g------~~~is~gdLlr  262 (520)
                      ++++|+|||||||+++.|++.+ .      +.+++.+|++.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l-~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATL-RRERGWAVAVITYDDIIP   41 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHH-HhccCCeEEEEccccccc
Confidence            6899999999999999998764 3      45899999984

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PTZ00301 uridine kinase; Provisional

Probab=97.57  E-value=0.0011  Score=64.91  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC---C---CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP---N---WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~---g---~~~is~gdLlr  262 (520)
                      ..+|.|.|+|||||||+|+.|++++.   |   ...++.++..+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            47899999999999999998876530   2   23667777665

>PRK08233 hypothetical protein; Provisional

Probab=97.55  E-value=0.0006  Score=63.85  Aligned_cols=125  Identities=13%  Similarity=0.117  Sum_probs=81.2

Q ss_pred             HHHHHHccCCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-h
Q psy11031         24 FNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-D  100 (520)
Q Consensus        24 l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~  100 (520)
                      +..++..|.    .+ +.+..+.+.+.+...  .....|||.+||+..... .+.   ..+|.+|+|++|.+++.+|+ .
T Consensus        47 ~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~~vivd~~~~~~~~-~~~---~~~d~~i~l~~~~~~~~~R~~~  117 (182)
T PRK08233         47 ICKWIDKGA----NY-SEWVLTPLIKDIQELIAKSNVDYIIVDYPFAYLNS-EMR---QFIDVTIFIDTPLDIAMARRIL  117 (182)
T ss_pred             hhhhhhccC----Ch-hhhhhHHHHHHHHHHHcCCCceEEEEeeehhhccH-HHH---HHcCEEEEEcCCHHHHHHHHHH
Confidence            445555554    44 555555666666432  223478887788865554 222   24799999999999977765 4


Q ss_pred             hCccCCccchHHHHHHHHHHHhccchHHHHhhh---CCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        101 YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ---RGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       101 rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~---~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      |...  +.+.+.+.+++..|...+.|...-+.+   ....+.||++.++++++++|.+.+..
T Consensus       118 R~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        118 RDFK--EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             HHhh--hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence            5321  112334677899999888876322111   23457799999999999999998864

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.54  E-value=0.00039  Score=70.93  Aligned_cols=91  Identities=11%  Similarity=0.035  Sum_probs=70.5

Q ss_pred             CCCcEEEeCCCCCHHhHHHHHHhc--CCcC-EEEEEEcCHHHHHHHh-hhCccCCcc-chHHHH---HHHHHHHhccchH
Q psy11031         56 AAKAFLISGYPRNMRDVVEYSDKI--KTIN-GVILIAWRQSLLERQI-DYGAKLGHV-ILSLAR---MELANFYQNVTPV  127 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~~~~~~--~~pd-~VI~L~~pd~~l~~Rl-~rg~~~~r~-d~e~i~---~Rl~~Y~~~t~pv  127 (520)
                      ...++|||+++++..|...|.+..  .... .+|+|++|.+++.+|+ .|+   +|. ..+.+.   +|++.|...|.|+
T Consensus        74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~~~~~p~  150 (300)
T PHA02530         74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG---ERAVPEDVLRSMFKQMKEYRGLVWPV  150 (300)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC---cCCCCHHHHHHHHHHHHHhcCCCCce
Confidence            357899999999999997665422  1222 2689999999999999 453   333 355555   9999999999999


Q ss_pred             HHHhhhCCcEEEEeCCCChHHH
Q psy11031        128 TDFFDQRGMLIAVNGERNPVEV  149 (520)
Q Consensus       128 i~~Y~~~~~l~~Ida~~~~eeV  149 (520)
                      +..|..+..++.+|.+.+..++
T Consensus       151 ~~~~~~~~~~~~~D~dgtl~~~  172 (300)
T PHA02530        151 YTADPGLPKAVIFDIDGTLAKM  172 (300)
T ss_pred             eccCCCCCCEEEEECCCcCcCC
Confidence            9999887788999999887764

>PLN02772 guanylate kinase

Probab=97.54  E-value=0.0015  Score=69.16  Aligned_cols=161  Identities=12%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch--------HHHHhhhhcCCccchHH---
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN--------SRIKSSVSAGDFVNRDV---  292 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g--------~~i~~~l~~G~~vPd~l---  292 (520)
                      ..+.|+|+||.||||+|++++|.+.++....+++..--|   .. ..+..-|        +.+...+.+|..+--..   
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR---~p-R~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~G  209 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---AP-REMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHG  209 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCC---CC-cccccCCceEeeCCHHHHHHHHHhCccceeeeecC
Confidence            446899999999999999999988763333334433444   11 1111111        23444444444322110   


Q ss_pred             -----HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC--hhhh-h--ccCCCCCHHHHHHH
Q psy11031        293 -----VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS--KLVL-H--KGQIDNSVSAFRRR  362 (520)
Q Consensus       293 -----v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~--~~~~-~--r~R~dD~~e~~~~R  362 (520)
                           -.+-+...+.     .++.+|||=   +..-+..+.+...  ..++++-++  .+.+ .  +.|...+++.+++|
T Consensus       210 n~YGTsk~~V~~vl~-----~Gk~vILdL---D~qGar~Lr~~~l--~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kR  279 (398)
T PLN02772        210 NLYGTSIEAVEVVTD-----SGKRCILDI---DVQGARSVRASSL--EAIFIFICPPSMEELEKRLRARGTETEEQIQKR  279 (398)
T ss_pred             ccccccHHHHHHHHH-----hCCcEEEeC---CHHHHHHHHHhcC--CeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHH
Confidence                 1222233233     356678773   3444555554432  334444444  2322 2  35666788999999


Q ss_pred             HHHHHHHhHHHH--HHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        363 LELFRERTLPML--RAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       363 l~~f~~~~~~l~--~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      +..+........  .+|+    .+ |..+ +.++-++++.++|.
T Consensus       280 L~~A~~Ei~~~~~~~~fD----~v-IvND-dLe~A~~~L~~iL~  317 (398)
T PLN02772        280 LRNAEAELEQGKSSGIFD----HI-LYND-NLEECYKNLKKLLG  317 (398)
T ss_pred             HHHHHHHHhhccccCCCC----EE-EECC-CHHHHHHHHHHHHh
Confidence            998865432110  1232    23 4444 78888888877763

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.51  E-value=0.00086  Score=68.03  Aligned_cols=104  Identities=14%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      |.|+|+|.|||||||.|+.|++.+    ....+++-.++.-.  ...=..+...+.++..           +...++..+
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~--~~~y~~~~~Ek~~R~~-----------l~s~v~r~l   68 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID--RNDYADSKKEKEARGS-----------LKSAVERAL   68 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T--TSSS--GGGHHHHHHH-----------HHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc--hhhhhchhhhHHHHHH-----------HHHHHHHhh
Confidence            469999999999999999999852    14455664444320  1100011111222221           222233333


Q ss_pred             hccccCCCcEEEEeC--CCCC-HHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031        302 KKTKYTEADGIVIDG--FPRE-MSQLIDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       302 ~~~~~~~~~G~ILDG--FPrt-~~Qae~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                      .     ...-+|+|+  |=+. .-+.-.+-+..+...++|+++|+.+.+
T Consensus        69 s-----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~  112 (270)
T PF08433_consen   69 S-----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC  112 (270)
T ss_dssp             T-----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred             c-----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence            3     357899997  3233 334555556666667899999998764

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.0007  Score=63.91  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCC--CC-eeeehhhHHhhhhcccccCCcch--HHHHhhhhcCCccchHHHHH
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NW-TQISLGKLLRYFANIEDDGEGLN--SRIKSSVSAGDFVNRDVVLD  295 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~-~~is~gdLlr~~~~~~~~~t~~g--~~i~~~l~~G~~vPd~lv~~  295 (520)
                      ...++.+||+.|.+||||||+|..|.+++.  |. .++=-||-+|   +.+..+-...  ........          +.
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR---~gL~~dLgFs~edR~eniRR----------va   85 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR---HGLNRDLGFSREDRIENIRR----------VA   85 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh---hcccCCCCCChHHHHHHHHH----------HH
Confidence            456788999999999999999999988752  32 3334457777   4432211111  11111111          01


Q ss_pred             HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhh-cCCC-CCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHH-
Q psy11031        296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENK-YQIH-PPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP-  372 (520)
Q Consensus       296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~-~~~p-~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~-  372 (520)
                      -+.+.|.     ....+||--|-.-......+-.. ++.. ..=||++||.+++.++-+.          -.|.+.... 
T Consensus        86 evAkll~-----daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpK----------GLYkKAr~Ge  150 (197)
T COG0529          86 EVAKLLA-----DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPK----------GLYKKARAGE  150 (197)
T ss_pred             HHHHHHH-----HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCch----------HHHHHHHcCC
Confidence            1112222     23457777774433332222222 2222 3358999999876543221          123333222 


Q ss_pred             ------HHHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        373 ------MLRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       373 ------l~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                            +-.-|+. .+--+.+|.+ .++++-.+.|...+..
T Consensus       151 I~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~  191 (197)
T COG0529         151 IKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE  191 (197)
T ss_pred             CCCCcCCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence                  2234543 3445678864 7788877777766643

>PRK13975 thymidylate kinase; Provisional

Probab=97.49  E-value=0.0026  Score=60.59  Aligned_cols=139  Identities=9%  Similarity=0.082  Sum_probs=82.9

Q ss_pred             cccCcHHHHHHHHHHccCCCCCCCCHHHHHHHH-HHHHh------cCCCCCcEEEeCCCCCH--Hh--------H-HHHH
Q psy11031         15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL-MLEMK------MSPAAKAFLISGYPRNM--RD--------V-VEYS   76 (520)
Q Consensus        15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll-~~~l~------~~~~~~G~ILDGFPRt~--~Q--------A-~~~~   76 (520)
                      |....+|+.++.++..+.    +-| ..+..+. .++..      ..-....+|+|.|..+-  -|        . ..+.
T Consensus        34 ~~~~~~g~~ir~~~~~~~----~~~-~~~~~~f~~~r~~~~~~i~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~  108 (196)
T PRK13975         34 PTDGKIGKLIREILSGSK----CDK-ETLALLFAADRVEHVKEIEEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSIN  108 (196)
T ss_pred             CCCChHHHHHHHHHccCC----CCH-HHHHHHHHHHHHHHHHHHHHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHH
Confidence            444567899999887653    333 2222222 22221      11123678999887541  11        0 0111


Q ss_pred             HhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHH
Q psy11031         77 DKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFR  154 (520)
Q Consensus        77 ~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~  154 (520)
                      .....||++|+|++|.+++.+|+. |+.... ...+...++...|.+...  .++|......+.||++ +++++|+++|.
T Consensus       109 ~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~-~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~  185 (196)
T PRK13975        109 RYAKKPDLVFLLDVDIEEALKRMETRDKEIF-EKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEIL  185 (196)
T ss_pred             hCCCCCCEEEEEcCCHHHHHHHHhccCcccc-chHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHH
Confidence            123479999999999999999994 431100 113344555566655444  3334334458999996 89999999999


Q ss_pred             HHHHHHh
Q psy11031        155 TAVLKIL  161 (520)
Q Consensus       155 ~~l~~~~  161 (520)
                      +.+...+
T Consensus       186 ~~i~~~~  192 (196)
T PRK13975        186 NKIKDKI  192 (196)
T ss_pred             HHHHHhC
Confidence            9998765

>PRK07429 phosphoribulokinase; Provisional

Probab=97.48  E-value=0.0012  Score=68.69  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCC---CeeeehhhHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN---WTQISLGKLL  261 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g---~~~is~gdLl  261 (520)
                      ..++.+|.|.|++||||||+|+.|++.+ +   ...++.+++.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll-~~~~~~vi~~Dd~~   46 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLL-GEELVTVICTDDYH   46 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHh-ccCceEEEEecccc
Confidence            4568899999999999999999999886 5   5677887764

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.41  E-value=0.00073  Score=66.57  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|.|++||||||+++.|+..+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999998865

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.39  E-value=0.0026  Score=68.07  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      .+-...+|+|+|++||||||+++.|++.| |...+
T Consensus       215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~-g~~~v  248 (399)
T PRK08099        215 RPFFVRTVAILGGESSGKSTLVNKLANIF-NTTSA  248 (399)
T ss_pred             hhCCCcEEEEEcCCCCCHHHHHHHHHHHh-CCCee
Confidence            46678899999999999999999999997 77654

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.35  E-value=0.00069  Score=66.22  Aligned_cols=145  Identities=16%  Similarity=0.208  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC---eeeehhhHHhhhhcccc-cC---------Cc-------chHHHHhhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW---TQISLGKLLRYFANIED-DG---------EG-------LNSRIKSSV  282 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~---~~is~gdLlr~~~~~~~-~~---------t~-------~g~~i~~~l  282 (520)
                      .++.+|-|-|++||||||+|+.|++.+ +.   ..||.++..+   .... ..         .+       +.+.+.. +
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~-~~~~~~~I~~D~YYk---~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L   80 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQL-GVEKVVVISLDDYYK---DQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-L   80 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHh-CcCcceEeecccccc---chhhcCHhhcCCcCccChhhhcHHHHHHHHHH-H
Confidence            345789999999999999999999997 63   4778877776   1110 00         00       1111211 2


Q ss_pred             hcCCccchHHHHHHHHHHHhc-cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCC-CCC---HH
Q psy11031        283 SAGDFVNRDVVLDIVYAEMKK-TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQI-DNS---VS  357 (520)
Q Consensus       283 ~~G~~vPd~lv~~ll~~~l~~-~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~-dD~---~e  357 (520)
                      .+|+.+......=.-..+... .......-+||+|+--=.+  +.+...   .+.-||++++.+.+..+|- .|.   -.
T Consensus        81 ~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~---~d~kIfvdtd~D~RliRri~RD~~~rg~  155 (218)
T COG0572          81 KQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDL---MDLKIFVDTDADVRLIRRIKRDVQERGR  155 (218)
T ss_pred             HcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhh---cCEEEEEeCCccHHHHHHHHHHHHHhCC
Confidence            233332221111110111100 0112356789999632211  222222   3567999999876421110 010   11


Q ss_pred             HHHHHHHHHHHHhHHHHHHh
Q psy11031        358 AFRRRLELFRERTLPMLRAM  377 (520)
Q Consensus       358 ~~~~Rl~~f~~~~~~l~~~y  377 (520)
                      .+...++.|.....|+.+.|
T Consensus       156 ~~e~vi~qy~~~vkp~~~~f  175 (218)
T COG0572         156 DLESVIEQYVKTVRPMYEQF  175 (218)
T ss_pred             CHHHHHHHHHHhhChhhhhc
Confidence            24456778888888887766

>PRK06217 hypothetical protein; Validated

Probab=97.30  E-value=0.0016  Score=61.83  Aligned_cols=138  Identities=11%  Similarity=0.126  Sum_probs=86.4

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEc
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW   90 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~   90 (520)
                      .++++ |++++..+..  ..+..-+.-.|++....++.+.+..   ..+|||||+|.....  .+   ...+|.+|+|++
T Consensus        24 ~l~~~-~~~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~G~~~~~~~--~~---~~~~d~~i~Ld~   92 (183)
T PRK06217         24 RLDIP-HLDTDDYFWL--PTDPPFTTKRPPEERLRLLLEDLRP---REGWVLSGSALGWGD--PL---EPLFDLVVFLTI   92 (183)
T ss_pred             HcCCc-EEEcCceeec--cCCCCccccCCHHHHHHHHHHHHhc---CCCEEEEccHHHHHH--HH---HhhCCEEEEEEC
Confidence            34666 7777776542  2222223456787777777777642   468999999975322  11   235889999999


Q ss_pred             CHHHHHHHhh-hCc-cCCc-----cc----hHHHHHHHHHHHhcc---chHHH---Hhhh-CCcEEEEeCCCChHHHHHH
Q psy11031         91 RQSLLERQID-YGA-KLGH-----VI----LSLARMELANFYQNV---TPVTD---FFDQ-RGMLIAVNGERNPVEVYAD  152 (520)
Q Consensus        91 pd~~l~~Rl~-rg~-~~~r-----~d----~e~i~~Rl~~Y~~~t---~pvi~---~Y~~-~~~l~~Ida~~~~eeV~~~  152 (520)
                      |.+++.+|+. |.. ..++     .+    ...+.++...|....   ..+..   ++.. .+.++.+++.++++++.++
T Consensus        93 ~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~  172 (183)
T PRK06217         93 PPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDE  172 (183)
T ss_pred             CHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHH
Confidence            9999999994 321 1122     11    122445555555422   12222   2222 2568889999999999999


Q ss_pred             HHHHHHH
Q psy11031        153 FRTAVLK  159 (520)
Q Consensus       153 i~~~l~~  159 (520)
                      |...|.+
T Consensus       173 i~~~~~~  179 (183)
T PRK06217        173 VLDHLAS  179 (183)
T ss_pred             HHHHHhc
Confidence            9998854

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0057  Score=56.23  Aligned_cols=151  Identities=16%  Similarity=0.116  Sum_probs=82.5

Q ss_pred             EcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---HHHHHHHHhccccC
Q psy11031        231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---LDIVYAEMKKTKYT  307 (520)
Q Consensus       231 lG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~~ll~~~l~~~~~~  307 (520)
                      +|-.||||||+++.|++++ |+..|.-++|=-   .+         -| +-|..|.++.|+--   ++.+..++.+ ...
T Consensus         1 MGVsG~GKStvg~~lA~~l-g~~fidGDdlHp---~a---------Ni-~KM~~GiPL~DdDR~pWL~~l~~~~~~-~~~   65 (161)
T COG3265           1 MGVSGSGKSTVGSALAERL-GAKFIDGDDLHP---PA---------NI-EKMSAGIPLNDDDRWPWLEALGDAAAS-LAQ   65 (161)
T ss_pred             CCCCccCHHHHHHHHHHHc-CCceecccccCC---HH---------HH-HHHhCCCCCCcchhhHHHHHHHHHHHH-hhc
Confidence            4889999999999999997 999998876643   11         11 23667777776432   2333444441 222


Q ss_pred             CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCC--CCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031        308 EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQID--NSVSAFRRRLELFRERTLPMLRAMDVETR  382 (520)
Q Consensus       308 ~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~d--D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~  382 (520)
                      .++..||----. ..+-..+-......-.+|||+.+.+... |  .|..  ...+-++..++       .+ +-=.....
T Consensus        66 ~~~~~vi~CSAL-Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa-------~L-E~P~~de~  136 (161)
T COG3265          66 KNKHVVIACSAL-KRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFA-------TL-EEPGADED  136 (161)
T ss_pred             CCCceEEecHHH-HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHH-------Hh-cCCCCCCC
Confidence            333333322111 1122222222121234788998887532 1  2322  22332222111       11 11111125


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHH
Q psy11031        383 LTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       383 l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +++||.++++++|.+++...|..
T Consensus       137 vi~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         137 VLTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             EEEeeCCCCHHHHHHHHHHHHhc
Confidence            88999999999999998887754

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.29  E-value=0.00089  Score=65.12  Aligned_cols=113  Identities=18%  Similarity=0.282  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCC--cchHHH---------HhhhhcCCccchHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGE--GLNSRI---------KSSVSAGDFVNRDVVL  294 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t--~~g~~i---------~~~l~~G~~vPd~lv~  294 (520)
                      .+++|.||+|+|||.+|-.||+++ |++.|+.+.+...  .....+|  +.-..+         ...+..|. ++.+-..
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~-g~pvI~~Driq~y--~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~   77 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKT-GAPVISLDRIQCY--PELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAH   77 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH---EEEEE-SGGG---GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHh-CCCEEEecceecc--cccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHH
Confidence            468999999999999999999998 9999999876552  2332222  111111         22355676 4444466


Q ss_pred             HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCC--CEEEecCChh
Q psy11031        295 DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHP--PMILIDCSKL  345 (520)
Q Consensus       295 ~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~--~VI~Ld~~~~  345 (520)
                      +.+..++.  ....+.|+||+|=--++-.+-. ..... .+.  .|..+.+++.
T Consensus        78 ~~Li~~v~--~~~~~~~~IlEGGSISLl~~m~-~~~~w~~~f~w~i~rl~l~d~  128 (233)
T PF01745_consen   78 ERLISEVN--SYSAHGGLILEGGSISLLNCMA-QDPYWSLDFRWHIRRLRLPDE  128 (233)
T ss_dssp             HHHHHHHH--TTTTSSEEEEEE--HHHHHHHH-H-TTTSSSSEEEEEE-----H
T ss_pred             HHHHHHHH--hccccCceEEeCchHHHHHHHH-hcccccCCCeEEEEEEECCCh
Confidence            66667777  4455899999996444333321 11222 222  3677777764

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.28  E-value=0.011  Score=56.33  Aligned_cols=141  Identities=6%  Similarity=-0.024  Sum_probs=80.2

Q ss_pred             cCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhc--------CCCCCcEEEeCCCCCH------------HhH
Q psy11031         13 DFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKM--------SPAAKAFLISGYPRNM------------RDV   72 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~--------~~~~~G~ILDGFPRt~------------~QA   72 (520)
                      ..|.....|..++.++...  .....+.....-.+..+...        ......+|+|-|+-+.            ...
T Consensus        38 ~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~  115 (205)
T PRK00698         38 REPGGTPLGEKLRELLLDP--NEEMDDKTELLLFYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLL  115 (205)
T ss_pred             eCCCCChHHHHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHH
Confidence            3454556889999988741  12244444332222222111        0124568999555331            111


Q ss_pred             HH---HHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccch--HHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031         73 VE---YSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVIL--SLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP  146 (520)
Q Consensus        73 ~~---~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~--e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~  146 (520)
                      ..   +......||++|+|++|.+++.+|+. |+.. .+.+.  ....+|+..+++.   +.+.+.  ..++.||+++++
T Consensus       116 ~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~~~~y~~---~~~~~~--~~~~~Id~~~~~  189 (205)
T PRK00698        116 LALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL-DRIEQEGLDFFERVREGYLE---LAEKEP--ERIVVIDASQSL  189 (205)
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc-chhhhhhHHHHHHHHHHHHH---HHHhCC--CeEEEEeCCCCH
Confidence            11   11222579999999999999999994 5421 12211  1334455433332   222332  347899999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy11031        147 VEVYADFRTAVLKIL  161 (520)
Q Consensus       147 eeV~~~i~~~l~~~~  161 (520)
                      ++|+++|.+++...+
T Consensus       190 e~v~~~i~~~i~~~~  204 (205)
T PRK00698        190 EEVHEDILAVIKAWL  204 (205)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987654

>PLN02348 phosphoribulokinase

Probab=97.23  E-value=0.0015  Score=69.18  Aligned_cols=28  Identities=14%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...|.+|-|.|++||||||+|+.|++.+
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~L   73 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVF   73 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999986

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.18  E-value=0.0034  Score=63.05  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+++.||||+||||+|+.+++.
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHH
Confidence            3566999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.18  E-value=0.00036  Score=61.34  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=27.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      |+|.||||+||||+|+.+++.+ +...  ++.+++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~   36 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELIS   36 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc-cccccccccccccc
Confidence            6899999999999999999997 8654  55555553

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.14  E-value=0.0072  Score=57.46  Aligned_cols=133  Identities=14%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             CcccCcHHHHHHHHHHccCCCCCCCCHHHHH--------HHHHHHHhcC-CCCCcEEEe----------CCCCCHHhH--
Q psy11031         14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT--------EVLMLEMKMS-PAAKAFLIS----------GYPRNMRDV--   72 (520)
Q Consensus        14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~--------~ll~~~l~~~-~~~~G~ILD----------GFPRt~~QA--   72 (520)
                      .|.....|..++.++..+.  ...+.+....        +.+.+.+... ....-+|+|          |++++....  
T Consensus        39 ~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~~r~~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~  116 (195)
T TIGR00041        39 EPGGTPIGEKIRELLLNEN--DEPLTDKAEALLFAADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLV  116 (195)
T ss_pred             CCCCChHHHHHHHHHcCCC--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHH
Confidence            4444568899999876443  1123322111        1111212110 112335677          567665543  


Q ss_pred             HHHHHhcCC--cCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHH
Q psy11031         73 VEYSDKIKT--INGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEV  149 (520)
Q Consensus        73 ~~~~~~~~~--pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV  149 (520)
                      ..+......  ||++|+|++|.+++.+|+. |+..    +.+.. .....+......-.+++.+...++.|||++++++|
T Consensus       117 ~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~----~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v  191 (195)
T TIGR00041       117 LELNEDALGDMPDLTIYLDIDPEVALERLRKRGEL----DREEF-EKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEV  191 (195)
T ss_pred             HHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCc----chHHH-HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHH
Confidence            222333333  9999999999999999984 4332    11111 11122222222223344434468999999999999


Q ss_pred             HHHH
Q psy11031        150 YADF  153 (520)
Q Consensus       150 ~~~i  153 (520)
                      .++|
T Consensus       192 ~~~i  195 (195)
T TIGR00041       192 EQDI  195 (195)
T ss_pred             HhhC
Confidence            8764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.12  E-value=0.0035  Score=63.74  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr  262 (520)
                      +|.|.|++||||||+++.|++.+.  +...++.+++.+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~   38 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS   38 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc
Confidence            378999999999999999997642  456788876643

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.03  E-value=0.002  Score=58.45  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |+|+||+||||||+++.|++.+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            7899999999999999999876

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF05729 NACHT: NACHT domain

Probab=96.89  E-value=0.0016  Score=59.41  Aligned_cols=23  Identities=43%  Similarity=0.863  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++|.|+|||||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            58999999999999999998754

>PLN02165 adenylate isopentenyltransferase

Probab=96.79  E-value=0.0013  Score=68.43  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      .....+|+|+||+||||||+|..|++.+ +...+|++.+
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l-~~eIIsaDs~   77 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRF-PSEIINSDKM   77 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHc-CCceecCChh
Confidence            3456689999999999999999999997 9999999876

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.78  E-value=0.0011  Score=57.42  Aligned_cols=25  Identities=28%  Similarity=0.581  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++|+|||||||||+++.|+..+
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcc
Confidence            4579999999999999999999886

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN02924 thymidylate kinase

Probab=96.78  E-value=0.053  Score=53.38  Aligned_cols=137  Identities=12%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             ccCcc-cCcHHHHHHHHHHccCCCCCCCCHHHHH-HHHHHHHhc-------CCCCCcEEEeCCCCCH-----------Hh
Q psy11031         12 LDFPS-HRNPLKMFNLFVSEEVKDFSFLSSKTVT-EVLMLEMKM-------SPAAKAFLISGYPRNM-----------RD   71 (520)
Q Consensus        12 ~~~~~-h~s~G~~l~~~i~~G~~~g~lVPdelv~-~ll~~~l~~-------~~~~~G~ILDGFPRt~-----------~Q   71 (520)
                      +..|. .+.+|+.++.++..+.    .+...... =....|...       ......+|+|-|.-+-           +-
T Consensus        50 ~~ep~~~~~~g~~ir~~l~~~~----~~~~~~~~llf~adR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~  125 (220)
T PLN02924         50 WRFPDRTTSVGQMISAYLSNKS----QLDDRAIHLLFSANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEW  125 (220)
T ss_pred             eeCCCCCChHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHH
Confidence            33453 4778999999998764    44333221 111112110       0134568999888632           11


Q ss_pred             HHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHH
Q psy11031         72 VVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYA  151 (520)
Q Consensus        72 A~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~  151 (520)
                      ...+......||++|+|++|.+++.+|...+.  .|.+.....+|+...+...       .+ ..++.|||++++++|++
T Consensus       126 ~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~--~~~E~~~~~~rv~~~Y~~l-------a~-~~~~vIDa~~sieeV~~  195 (220)
T PLN02924        126 CKAPEVGLPAPDLVLYLDISPEEAAERGGYGG--ERYEKLEFQKKVAKRFQTL-------RD-SSWKIIDASQSIEEVEK  195 (220)
T ss_pred             HHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc--cccccHHHHHHHHHHHHHH-------hh-cCEEEECCCCCHHHHHH
Confidence            11122223479999999999999999974221  1211112223332222222       11 34788999999999999


Q ss_pred             HHHHHHHHHhc
Q psy11031        152 DFRTAVLKILN  162 (520)
Q Consensus       152 ~i~~~l~~~~~  162 (520)
                      +|.+.|...+.
T Consensus       196 ~I~~~I~~~l~  206 (220)
T PLN02924        196 KIREVVLDTVQ  206 (220)
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.77  E-value=0.0014  Score=67.77  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=32.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      .+++|+|+||+|||||++|..|++++ +...||++.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~-~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRL-NGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhC-CCcEEecccc
Confidence            35789999999999999999999997 9999999873

>PLN02748 tRNA dimethylallyltransferase

Probab=96.75  E-value=0.0017  Score=70.49  Aligned_cols=41  Identities=22%  Similarity=0.341  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh--HHh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK--LLR  262 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd--Llr  262 (520)
                      ...++++|+|+||+|||||++|..|++++ +...||.+.  +++
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~-~~eii~~DsmQVYr   60 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHF-PVEIINADSMQVYS   60 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhc-CeeEEcCchheeeC
Confidence            45677899999999999999999999998 999999973  555

>PHA00729 NTP-binding motif containing protein

Probab=96.73  E-value=0.0055  Score=60.46  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..|+|+|+||+||||+|..|+++.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999985

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.72  E-value=0.0012  Score=62.64  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      +|.|.|++||||||+|+.|++.+    .+...|++++..+
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            48899999999999999999874    2568899999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.71  E-value=0.0093  Score=59.67  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      |+.|++.||||.|||.+|+.||.+. ..+.+.+
T Consensus       151 PknVLFyGppGTGKTm~Akalane~-kvp~l~v  182 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEA-KVPLLLV  182 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhccc-CCceEEe
Confidence            6789999999999999999999986 7777665

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.69  E-value=0.0027  Score=59.95  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +++|+|++|||||+.|..++...
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~   23 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAEL   23 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc
Confidence            37999999999999999998764

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=96.63  E-value=0.048  Score=55.47  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=53.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|.|..||||||-.+.|- .. ||..++                              .+|..++.++++....+..
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lE-D~-Gy~cvD------------------------------NlP~~Ll~~l~~~~~~~~~   49 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALE-DL-GYYCVD------------------------------NLPPSLLPQLIELLAQSNS   49 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHH-hc-CeeEEc------------------------------CCcHHHHHHHHHHHHhcCC
Confidence            468999999999999998764 44 655441                              3455666666654332101


Q ss_pred             cCCCcEEEEe----CCCCCHHHH-HHHHhhcCCCCCEEEecCChhhh
Q psy11031        306 YTEADGIVID----GFPREMSQL-IDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       306 ~~~~~G~ILD----GFPrt~~Qa-e~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                      ....-.++||    +|...+.++ ..+.+. +....++||+|+++++
T Consensus        50 ~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~-~~~~~ilFLdA~d~~L   95 (284)
T PF03668_consen   50 KIEKVAIVIDIRSREFFEDLFEALDELRKK-GIDVRILFLDASDEVL   95 (284)
T ss_pred             CCceEEEEEeCCChHHHHHHHHHHHHHHhc-CCceEEEEEECChHHH
Confidence            1112357788    343333332 233332 4445699999999875

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.60  E-value=0.0038  Score=55.02  Aligned_cols=97  Identities=11%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC---------CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP---------NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVV  293 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~---------g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv  293 (520)
                      ...++|.|++|||||++++.+++.+.         .+.++.+....        ....+...+...+.....  ...+-+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~l~~~~~~~~~~~~l   75 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR--------TPRDFAQEILEALGLPLKSRQTSDEL   75 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS--------SHHHHHHHHHHHHT-SSSSTS-HHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC--------CHHHHHHHHHHHhCccccccCCHHHH
Confidence            45699999999999999999998641         22333332111        111233334333332211  123333


Q ss_pred             HHHHHHHHhccccCCCcEEEEeCCCC--CHHHHHHHHhhcC
Q psy11031        294 LDIVYAEMKKTKYTEADGIVIDGFPR--EMSQLIDFENKYQ  332 (520)
Q Consensus       294 ~~ll~~~l~~~~~~~~~G~ILDGFPr--t~~Qae~l~~~~~  332 (520)
                      .+.+.+.+.+  .. ..-+|||.+=.  +....+.|.....
T Consensus        76 ~~~~~~~l~~--~~-~~~lviDe~~~l~~~~~l~~l~~l~~  113 (131)
T PF13401_consen   76 RSLLIDALDR--RR-VVLLVIDEADHLFSDEFLEFLRSLLN  113 (131)
T ss_dssp             HHHHHHHHHH--CT-EEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHh--cC-CeEEEEeChHhcCCHHHHHHHHHHHh
Confidence            4666666662  11 14689998622  3444555544444

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.59  E-value=0.0032  Score=66.24  Aligned_cols=40  Identities=30%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLlr  262 (520)
                      .+.|..+.|.||||+|||.+|+.|+++. |+.  ++|.++|+.
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~s  186 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELES  186 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhc
Confidence            4567888999999999999999999996 775  567778887

>PRK15453 phosphoribulokinase; Provisional

Probab=96.56  E-value=0.0037  Score=63.60  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr  262 (520)
                      .++++|.|.|++||||||+|+.|++.+.    +...++.++..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            5678999999999999999999998651    134566655543

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.51  E-value=0.0018  Score=60.14  Aligned_cols=32  Identities=16%  Similarity=0.436  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +|+|.|+|||||||+++.|++.  |+..+  .+..|
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~--g~~~v--~E~ar   32 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR--GYPVV--PEYAR   32 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH--T-EEE----TTH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc--CCeEE--eecHH
Confidence            5999999999999999999986  88876  55555

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.51  E-value=0.0019  Score=60.20  Aligned_cols=38  Identities=16%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .+.+|+|.|+||+||||+|.+|++++ .-.-+.+|-++.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~kvgGf~t   41 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKL-REKGYKVGGFIT   41 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHH-HhcCceeeeEEe
Confidence            46789999999999999999999875 444355555555

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.031  Score=55.75  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY  263 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~  263 (520)
                      ...|.+|++=|++|.||||+|.-||.++ |+.++=..|.+|+
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rL-gI~~visTD~IRE  126 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRL-GIRSVISTDSIRE  126 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHc-CCceeecchHHHH
Confidence            3457888888899999999999999997 9999866677773

>KOG3308|consensus

Probab=96.47  E-value=0.0068  Score=58.36  Aligned_cols=39  Identities=18%  Similarity=0.364  Sum_probs=35.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +..+|-|-|...|||||+|+.|.+.|+|+..|+-+|.++
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK   41 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK   41 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence            346788889999999999999999999999999999987

>PRK05439 pantothenate kinase; Provisional

Probab=96.46  E-value=0.0031  Score=65.18  Aligned_cols=41  Identities=12%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLlr  262 (520)
                      ...|.+|.|.|+|||||||+|+.|++.+.      ....|++++.+.
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            45688999999999999999999988541      246788888876

>PLN02840 tRNA dimethylallyltransferase

Probab=96.42  E-value=0.003  Score=67.63  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      .+.++|+|.||+||||||+|..|++++ +...||++.
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~-~~~iis~Ds   54 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRL-NGEIISADS   54 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHC-CCCeEeccc
Confidence            445689999999999999999999998 888888875

>KOG0738|consensus

Probab=96.41  E-value=0.018  Score=60.48  Aligned_cols=129  Identities=20%  Similarity=0.251  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      +=|+++||||+|||.+|+.++.+. |-..+  |...|..+   -                .|+   .+-++.+|.+ |. 
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc-~tTFFNVSsstltSK---w----------------RGe---SEKlvRlLFe-mA-  300 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATEC-GTTFFNVSSSTLTSK---W----------------RGE---SEKLVRLLFE-MA-  300 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhh-cCeEEEechhhhhhh---h----------------ccc---hHHHHHHHHH-HH-
Confidence            459999999999999999999987 76554  55455441   1                122   1222223221 11 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecC-ChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDC-SKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETR  382 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~-~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~  382 (520)
                                                 -...|.+||||= +..+..|++..+ -|+.++--.++.-+...+-..+.....
T Consensus       301 ---------------------------RfyAPStIFiDEIDslcs~RG~s~E-HEaSRRvKsELLvQmDG~~~t~e~~k~  352 (491)
T KOG0738|consen  301 ---------------------------RFYAPSTIFIDEIDSLCSQRGGSSE-HEASRRVKSELLVQMDGVQGTLENSKV  352 (491)
T ss_pred             ---------------------------HHhCCceeehhhHHHHHhcCCCccc-hhHHHHHHHHHHHHhhcccccccccee
Confidence                                       111355777763 333333444322 333333335666666676666655445


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        383 LTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       383 l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      +.++-|+.=|+++=+.+...|+.+|
T Consensus       353 VmVLAATN~PWdiDEAlrRRlEKRI  377 (491)
T KOG0738|consen  353 VMVLAATNFPWDIDEALRRRLEKRI  377 (491)
T ss_pred             EEEEeccCCCcchHHHHHHHHhhhe
Confidence            6677788888877777776666544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=96.38  E-value=0.0094  Score=67.95  Aligned_cols=32  Identities=25%  Similarity=0.619  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ....|+++|.||+||||+|++|++.+ +|..++
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l-~~~~~~  245 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYF-QWNGLQ  245 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHH-HhcCCC
Confidence            35689999999999999999999875 655443

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.35  E-value=0.0029  Score=60.67  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|.|.|++||||||+|+.|++.+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L   23 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQIL   23 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999876

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=96.33  E-value=0.0042  Score=61.03  Aligned_cols=35  Identities=11%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCee-eehhhHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQ-ISLGKLLRY  263 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~-is~gdLlr~  263 (520)
                      +|.|.|.|||||||.|+.+.++  |..+ +++++-+|+
T Consensus         2 iI~i~G~~gsGKstva~~~~~~--g~~~~~~~~d~ik~   37 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIEN--YNAVKYQLADPIKE   37 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhc--CCcEEEehhHHHHH
Confidence            6999999999999999988765  5666 999999993

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.29  E-value=0.0033  Score=64.26  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      +|+|+||+|||||++|..|++.+ +...||++.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~-~~~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKL-NAEIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC-CCcEEEech
Confidence            38999999999999999999998 999999986

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.27  E-value=0.028  Score=54.90  Aligned_cols=142  Identities=10%  Similarity=0.026  Sum_probs=82.9

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh---c---CC--CCCcEEEeCCCCCHHhHH--------H
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK---M---SP--AAKAFLISGYPRNMRDVV--------E   74 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~---~---~~--~~~G~ILDGFPRt~~QA~--------~   74 (520)
                      +...|..+.+|..+++++.++.  ..+=|-....=...+|..   +   +.  ...-+|.|-|=-+.-=.+        .
T Consensus        36 ~trEP~~~~ige~iR~~ll~~~--~~~~~~~e~lLfaadR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~  113 (208)
T COG0125          36 LTREPGGTPIGEKIRELLLNGE--EKLSPKAEALLFAADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLD  113 (208)
T ss_pred             EEeCCCCChHHHHHHHHHcCCc--cCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHH
Confidence            4557888999999999998873  112232222212222221   0   11  134457776653322111        1


Q ss_pred             HHH----h---cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccc----hHHHHhhhCCcEEEEeC
Q psy11031         75 YSD----K---IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVT----PVTDFFDQRGMLIAVNG  142 (520)
Q Consensus        75 ~~~----~---~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~----pvi~~Y~~~~~l~~Ida  142 (520)
                      |..    .   +..||++|+|++|-++..+|+. ++....|.+.+.     ..|++.+.    .+.+.+.+  .+++|||
T Consensus       114 ~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~-----~~f~~kvr~~Y~~la~~~~~--r~~vIda  186 (208)
T COG0125         114 WVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKED-----DEFLEKVREGYLELAAKFPE--RIIVIDA  186 (208)
T ss_pred             HHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHH-----HHHHHHHHHHHHHHHhhCCC--eEEEEEC
Confidence            111    1   2379999999999999999995 433223333221     12222222    23333433  4999999


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q psy11031        143 ERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       143 ~~~~eeV~~~i~~~l~~~~  161 (520)
                      ++++++|..+|...|...+
T Consensus       187 ~~~~e~v~~~i~~~l~~~l  205 (208)
T COG0125         187 SRPLEEVHEEILKILKERL  205 (208)
T ss_pred             CCCHHHHHHHHHHHHHHhh
Confidence            9999999999999998766

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.27  E-value=0.0033  Score=56.48  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      |+|.|+||+|||++++.+++.+ +...+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~-~~~~~   28 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL-GRPVI   28 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH-TCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-hcceE
Confidence            7899999999999999999987 76654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK06761 hypothetical protein; Provisional

Probab=96.24  E-value=0.0037  Score=63.72  Aligned_cols=28  Identities=18%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      .++|+|.|+|||||||+++.|++++ +..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L-~~~   30 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDIL-SQN   30 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc-CcC
Confidence            4689999999999999999999986 643

>KOG0744|consensus

Probab=96.24  E-value=0.0032  Score=64.56  Aligned_cols=25  Identities=24%  Similarity=0.615  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -..|++.||||.|||++|+.||+++
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkL  201 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKL  201 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhh
Confidence            4579999999999999999999986

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.23  E-value=0.0039  Score=66.64  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      .|..|+|+||||||||++|+.|++.+ +++++.++.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA   80 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeec
Confidence            45789999999999999999999997 998888763

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK08118 topology modulation protein; Reviewed

Probab=96.17  E-value=0.027  Score=52.84  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             ccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeC-CCCCHHhHHHHHHhcCCcCEEEEEEc
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISG-YPRNMRDVVEYSDKIKTINGVILIAW   90 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDG-FPRt~~QA~~~~~~~~~pd~VI~L~~   90 (520)
                      ++++ |++++..+..      ..+..++++.+..++.+.++.    .+||||| |+++.+..  +    ..+|.||+|++
T Consensus        25 l~~~-~~~lD~l~~~------~~w~~~~~~~~~~~~~~~~~~----~~wVidG~~~~~~~~~--l----~~~d~vi~Ld~   87 (167)
T PRK08118         25 LNIP-VHHLDALFWK------PNWEGVPKEEQITVQNELVKE----DEWIIDGNYGGTMDIR--L----NAADTIIFLDI   87 (167)
T ss_pred             hCCC-ceecchhhcc------cCCcCCCHHHHHHHHHHHhcC----CCEEEeCCcchHHHHH--H----HhCCEEEEEeC
Confidence            4455 5666655431      123478998888887776643    5799999 77777544  2    25899999999


Q ss_pred             CHHHHHHHh
Q psy11031         91 RQSLLERQI   99 (520)
Q Consensus        91 pd~~l~~Rl   99 (520)
                      |..++..|+
T Consensus        88 p~~~~~~R~   96 (167)
T PRK08118         88 PRTICLYRA   96 (167)
T ss_pred             CHHHHHHHH
Confidence            999887776

>KOG0739|consensus

Probab=96.03  E-value=0.069  Score=54.55  Aligned_cols=124  Identities=19%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .=|++.||||.|||.+|+.+|..- +-.  .+|..||+.+|.                   |+  .+.+|.+|++.+-+ 
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEA-nSTFFSvSSSDLvSKWm-------------------GE--SEkLVknLFemARe-  223 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVSKWM-------------------GE--SEKLVKNLFEMARE-  223 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhc-CCceEEeehHHHHHHHh-------------------cc--HHHHHHHHHHHHHh-
Confidence            449999999999999999999874 544  456668877321                   11  12334444332222 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCE
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRL  383 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l  383 (520)
                                                   ..+.+||+|-=+.+.+ .|.+...++.++--.+|.-+++.+-.   +..-+
T Consensus       224 -----------------------------~kPSIIFiDEiDslcg-~r~enEseasRRIKTEfLVQMqGVG~---d~~gv  270 (439)
T KOG0739|consen  224 -----------------------------NKPSIIFIDEIDSLCG-SRSENESEASRRIKTEFLVQMQGVGN---DNDGV  270 (439)
T ss_pred             -----------------------------cCCcEEEeehhhhhcc-CCCCCchHHHHHHHHHHHHhhhcccc---CCCce
Confidence                                         2355777764333333 33444344444333556666555432   22235


Q ss_pred             EEEECCCCHHHHHHHHHHHHHH
Q psy11031        384 TIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       384 ~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +++-|..-|+.+=..|.+.+..
T Consensus       271 LVLgATNiPw~LDsAIRRRFek  292 (439)
T KOG0739|consen  271 LVLGATNIPWVLDSAIRRRFEK  292 (439)
T ss_pred             EEEecCCCchhHHHHHHHHhhc
Confidence            6677887777655555554444

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.01  E-value=0.032  Score=52.52  Aligned_cols=139  Identities=12%  Similarity=0.017  Sum_probs=75.5

Q ss_pred             CcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH-------HHHHHhc-CCCCCcEEEeCCCCCH---------------H
Q psy11031         14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV-------LMLEMKM-SPAAKAFLISGYPRNM---------------R   70 (520)
Q Consensus        14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l-------l~~~l~~-~~~~~G~ILDGFPRt~---------------~   70 (520)
                      .|.....|..++.++..+. ...+-|.....-.       +.+.+.. ......+|+|-|+-+-               .
T Consensus        36 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~  114 (200)
T cd01672          36 EPGGTPIGEAIRELLLDPE-DEKMDPRAELLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIE  114 (200)
T ss_pred             CCCCCchHHHHHHHHhccC-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHH
Confidence            3444456888888877653 1223333221111       1111111 1235678888555221               1


Q ss_pred             hHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCc-cchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHH
Q psy11031         71 DVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGH-VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVE  148 (520)
Q Consensus        71 QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r-~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ee  148 (520)
                      +...+......|+.+|+|++|.+++.+|+. |+..... .......+++..+.+.   +...|.  ..++.||++.++++
T Consensus       115 ~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~--~~~~~id~~~~~e~  189 (200)
T cd01672         115 ALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVREGYLE---LAAQEP--ERIIVIDASQPLEE  189 (200)
T ss_pred             HHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHH---HHHhCC--CeEEEEeCCCCHHH
Confidence            221222233479999999999999999994 4432111 1112233333333222   222221  34789999999999


Q ss_pred             HHHHHHHHHH
Q psy11031        149 VYADFRTAVL  158 (520)
Q Consensus       149 V~~~i~~~l~  158 (520)
                      |+++|...|.
T Consensus       190 i~~~i~~~i~  199 (200)
T cd01672         190 VLAEILKAIL  199 (200)
T ss_pred             HHHHHHHHHh
Confidence            9999998774

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>CHL00181 cbbX CbbX; Provisional

Probab=95.99  E-value=0.016  Score=59.35  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC--C------CeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--N------WTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g------~~~is~gdLlr  262 (520)
                      .+..+++.|+||+||||+|+.+++.+.  |      +..++..+++.
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~  104 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG  104 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence            355699999999999999999987531  1      34556666654

>KOG0736|consensus

Probab=95.99  E-value=0.025  Score=63.86  Aligned_cols=95  Identities=20%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      -=|++.||||+|||.+|+.+|.++ .+..+|+.  +||.   ..              +...+    +-+.+        
T Consensus       706 SGILLYGPPGTGKTLlAKAVATEc-sL~FlSVKGPELLN---MY--------------VGqSE----~NVR~--------  755 (953)
T KOG0736|consen  706 SGILLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPELLN---MY--------------VGQSE----ENVRE--------  755 (953)
T ss_pred             ceeEEECCCCCchHHHHHHHHhhc-eeeEEeecCHHHHH---HH--------------hcchH----HHHHH--------
Confidence            349999999999999999999998 99999883  4443   11              11111    11222        


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhhccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLHKGQIDNSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~r~R~dD~~e~~~~Rl~~f~~~~~~  372 (520)
                                            .|+++-...|+|||+|==+ ..-.|+|..|+-..+.+-..+.......
T Consensus       756 ----------------------VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg  803 (953)
T KOG0736|consen  756 ----------------------VFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG  803 (953)
T ss_pred             ----------------------HHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence                                  2444444568899988433 3346788888766666555544444333

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.95  E-value=0.0049  Score=60.59  Aligned_cols=36  Identities=17%  Similarity=0.176  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLlr  262 (520)
                      +|.|.|++||||||+|+.|+..+.      ....|++++...
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~   42 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY   42 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence            377999999999999999998751      245677777754

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=95.93  E-value=0.0083  Score=59.07  Aligned_cols=31  Identities=13%  Similarity=0.173  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      ...-+++.||||+||||+|..||+.. |....
T Consensus        49 ~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~   79 (233)
T PF05496_consen   49 ALDHMLFYGPPGLGKTTLARIIANEL-GVNFK   79 (233)
T ss_dssp             ---EEEEESSTTSSHHHHHHHHHHHC-T--EE
T ss_pred             CcceEEEECCCccchhHHHHHHHhcc-CCCeE
Confidence            45679999999999999999999997 66543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.93  E-value=0.063  Score=50.11  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ++++.|+|||||||++..++..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~   23 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALY   23 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988865

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.90  E-value=0.0069  Score=67.27  Aligned_cols=58  Identities=21%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             CCCCCCcccCccccc-cccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        203 FTRPNGVVSEPYRKI-KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       203 ~~~~~~~~~~~~~~~-~~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      ...++||++.-+... .......+.+|.|.|++||||||+|+.|+..+++...|++++.
T Consensus        42 ~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         42 LSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             cccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            345667766544321 1112345789999999999999999999998756678888765

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=95.89  E-value=0.0063  Score=65.15  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      .|..|+++|||||||||+|+.|++.+ ++.++.++.
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~   83 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA   83 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-CChheeecc
Confidence            35789999999999999999999987 888877753

>smart00763 AAA_PrkA PrkA AAA domain

Probab=95.86  E-value=0.0064  Score=63.86  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.++|.|||||||||+|+.|++.+
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999886

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.82  E-value=0.0075  Score=61.82  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLlr  262 (520)
                      ...|.+|.|.|++||||||+|+.|+..+.      ....++++....
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            35678999999999999999988765431      244567766554

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=95.77  E-value=0.018  Score=57.97  Aligned_cols=28  Identities=18%  Similarity=0.311  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      .|++.|+||+|||++|+.|++.+ |...+
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~l-g~~~~   50 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKR-DRPVM   50 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh-CCCEE
Confidence            47899999999999999999876 77655

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK07933 thymidylate kinase; Validated

Probab=95.74  E-value=0.029  Score=54.85  Aligned_cols=137  Identities=12%  Similarity=0.062  Sum_probs=72.9

Q ss_pred             CcHHHHHHHHHHccCCCCCCCCHHHHHHHHH--H------HHhc-CCCCCcEEEeCCCCCH--HhH-----------HHH
Q psy11031         18 RNPLKMFNLFVSEEVKDFSFLSSKTVTEVLM--L------EMKM-SPAAKAFLISGYPRNM--RDV-----------VEY   75 (520)
Q Consensus        18 ~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~--~------~l~~-~~~~~G~ILDGFPRt~--~QA-----------~~~   75 (520)
                      +..|+.++.++....  +.++.+.....++.  +      .|.. .....-+|.|.|--+-  -|+           ..|
T Consensus        42 ~~~g~~ir~~l~~~~--~~~~~~~~~~~llf~a~R~~~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~  119 (213)
T PRK07933         42 SVHADLAAEALHGRH--GDLADSVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAW  119 (213)
T ss_pred             CCccHHHHHHHcCCC--CcccCCHHHHHHHHhhhhhhhHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHH
Confidence            557888988887432  11322222223321  1      1110 0123457889888664  122           122


Q ss_pred             HHh-------cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh---CCcEEEEeCCC
Q psy11031         76 SDK-------IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ---RGMLIAVNGER  144 (520)
Q Consensus        76 ~~~-------~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~---~~~l~~Ida~~  144 (520)
                      ...       ...||++|+|++|-+++.+|+. |+........+.+.+ -..|.+.+......+.+   ...++.|||++
T Consensus       120 ~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~  198 (213)
T PRK07933        120 VAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPDV  198 (213)
T ss_pred             HHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCC
Confidence            221       1269999999999999999994 542110000000111 11333333222221111   23588899999


Q ss_pred             ChHHHHHHHHHHH
Q psy11031        145 NPVEVYADFRTAV  157 (520)
Q Consensus       145 ~~eeV~~~i~~~l  157 (520)
                      ++++|+++|.+.|
T Consensus       199 ~~e~v~~~i~~~~  211 (213)
T PRK07933        199 DPAALAARLAAAL  211 (213)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998876

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.72  E-value=0.0089  Score=51.70  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|+|+|++||||||+.++|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            59999999999999999999865

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.71  E-value=0.0091  Score=52.28  Aligned_cols=25  Identities=20%  Similarity=0.541  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++|.|+||+|||++++.+++.+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.70  E-value=0.02  Score=56.42  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=27.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      ...|..++|.|+||+||||+|+.|+.+   ..+++.+.
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~~~---~~~~~~d~   43 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLPGK---TLVLSFDM   43 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcCCC---CEEEeccc
Confidence            345788999999999999999988643   45666643

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.67  E-value=0.0077  Score=58.21  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |.+|+++||+|+||||.+.+||.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            6889999999999999999999765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF13245 AAA_19: Part of AAA domain

Probab=95.60  E-value=0.011  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=16.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++|.||||||||+.+..++..
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            455777999999999554444433

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=95.53  E-value=0.064  Score=50.68  Aligned_cols=127  Identities=12%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             cccCcHHHHHHHHHHccCCCCCCCCHHHHHH------------HHHHHHhcCCCCCcEEEeCCC----------C--CHH
Q psy11031         15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVTE------------VLMLEMKMSPAAKAFLISGYP----------R--NMR   70 (520)
Q Consensus        15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~------------ll~~~l~~~~~~~G~ILDGFP----------R--t~~   70 (520)
                      |....+|..++.++.++.    -.......-            .+...++   ...-+|+|-|-          .  ...
T Consensus        33 ~~~~~~g~~ir~~l~~~~----~~~~~~~~~l~~a~r~~~~~~~I~~~l~---~g~~VI~DRy~~S~lay~~~~~~~~~~  105 (186)
T PF02223_consen   33 PGSTPIGELIRELLRSES----ELSPEAEALLFAADRAWHLARVIRPALK---RGKIVICDRYIYSTLAYQGAKGELDID  105 (186)
T ss_dssp             STSSHHHHHHHHHHHTSS----TCGHHHHHHHHHHHHHHHHHHTHHHHHH---TTSEEEEESEHHHHHHHHTTTTSSTHH
T ss_pred             CCCChHHHHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEechhHHHHHhCccccCCcch
Confidence            346678999999999333    222211111            1111221   23556777552          2  123


Q ss_pred             hHHHHHHhcC--CcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChH
Q psy11031         71 DVVEYSDKIK--TINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPV  147 (520)
Q Consensus        71 QA~~~~~~~~--~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~e  147 (520)
                      ....+.....  .||++|+|+++.++..+|+. ++. ..+...+. ...+..+++.-..+.+   ..+.++.|||+.+++
T Consensus       106 ~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~-~~~~~~~~-~~~~~~~~~~y~~l~~---~~~~~~iid~~~~~e  180 (186)
T PF02223_consen  106 WIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE-KDDEEEED-LEYLRRVREAYLELAK---DPNNWVIIDASRSIE  180 (186)
T ss_dssp             HHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-TTTTTTHH-HHHHHHHHHHHHHHHH---TTTTEEEEETTS-HH
T ss_pred             hhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-cchHHHHH-HHHHHHHHHHHHHHHc---CCCCEEEEECCCCHH
Confidence            3333444444  99999999999999999994 443 22322211 1122222222222333   345699999999999


Q ss_pred             HHHHHH
Q psy11031        148 EVYADF  153 (520)
Q Consensus       148 eV~~~i  153 (520)
                      +|.++|
T Consensus       181 ~v~~~I  186 (186)
T PF02223_consen  181 EVHEQI  186 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            999886

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=95.53  E-value=0.063  Score=58.17  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..|.+|+++|++||||||.|.+|+..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999999998754

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=95.52  E-value=0.011  Score=62.96  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr  262 (520)
                      ..|+-|+|.||||+|||++|+.++... +.  ..++..+++.
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~-~~~~i~v~~~~l~~  203 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSELVQ  203 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHh-CCCEEEeehHHHhH
Confidence            446779999999999999999999975 54  4456666665

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.52  E-value=0.0098  Score=61.79  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ...|+|.|+||+||||+++.|++.+ |+.++.
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l-~~~~~r   94 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARL-NWPCVR   94 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHH-CCCeEE
Confidence            3459999999999999999999997 887763

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.49  E-value=0.012  Score=61.24  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      ...+|+|+|++||||||+++.|++.| |...+
T Consensus       161 ~~~~~~~~G~~~~gkstl~~~l~~~~-~~~~v  191 (325)
T TIGR01526       161 FVKTVAILGGESTGKSTLVNKLAAVF-NTTSA  191 (325)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhh-CCCEE
Confidence            35789999999999999999999987 87764

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.48  E-value=0.0091  Score=56.27  Aligned_cols=23  Identities=26%  Similarity=0.690  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|+|.|+||+||||+++++.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999998875

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13173 AAA_14: AAA domain

Probab=95.47  E-value=0.015  Score=51.77  Aligned_cols=37  Identities=16%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLL  261 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLl  261 (520)
                      .++++|.|+.||||||+++.+++.+.   .+.++++.+.-
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR   41 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence            36799999999999999999998762   36666665443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.44  E-value=0.0068  Score=60.35  Aligned_cols=20  Identities=30%  Similarity=0.589  Sum_probs=17.8

Q ss_pred             EEcCCCCChhHHHHHHHhhC
Q psy11031        230 VVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       230 vlG~PGSGKsT~a~~La~k~  249 (520)
                      |+|||||||||.|+.+.+.+
T Consensus         1 ViGpaGSGKTT~~~~~~~~~   20 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWL   20 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999875

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0733|consensus

Probab=95.44  E-value=0.017  Score=63.74  Aligned_cols=37  Identities=19%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr  262 (520)
                      |.=+++.||||||||.+|+.||..+ |++.+++.  +++.
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel-~vPf~~isApeivS  261 (802)
T KOG0733|consen  223 PRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSISAPEIVS  261 (802)
T ss_pred             CCceeeeCCCCccHHHHHHHHhhhc-CCceEeecchhhhc
Confidence            4458999999999999999999997 99988764  4444

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.43  E-value=0.013  Score=64.33  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ..|+-|++.||||||||++|+.||..+ |++.+  +++.++.
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~l~~  297 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGKLFG  297 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHHhcc
Confidence            456779999999999999999999996 87655  4455544

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.41  E-value=0.19  Score=47.05  Aligned_cols=88  Identities=9%  Similarity=0.016  Sum_probs=59.6

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      ....|+||-..   -...+.... .-..+|+|+++.+++.+|+..+   +|.+++.+.+|+..+.....       ...-
T Consensus        90 g~~vv~~g~~~---~~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R---~~~~~~~~~~rl~~~~~~~~-------~~~~  155 (179)
T TIGR02322        90 GDVVVVNGSRA---VLPEARQRY-PNLLVVNITASPDVLAQRLAAR---GRESREEIEERLARSARFAA-------APAD  155 (179)
T ss_pred             CCEEEEECCHH---HHHHHHHHC-CCcEEEEEECCHHHHHHHHHHc---CCCCHHHHHHHHHHHhhccc-------ccCC
Confidence            35689999732   122222222 3347899999999999999422   35567778888875543322       2233


Q ss_pred             EEEEeCCCChHHHHHHHHHHHH
Q psy11031        137 LIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus       137 l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                      ++.|+.+++++++..+|.+.+.
T Consensus       156 ~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       156 VTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc
Confidence            6678999999999999998875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.41  E-value=0.017  Score=52.51  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      ...+|+|.|..||||||+++.+++.+ |+.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~l-g~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGL-GIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc-CCC
Confidence            35689999999999999999999987 763

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.40  E-value=0.014  Score=55.40  Aligned_cols=27  Identities=11%  Similarity=0.228  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..++++.|+|++||||||++++|...+
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHH
Confidence            457799999999999999999998664

>smart00072 GuKc Guanylate kinase homologues

Probab=95.38  E-value=0.059  Score=51.14  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=76.0

Q ss_pred             HHHHHHHHccCCCCCCCCHHHHHH--------HHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCH-
Q psy11031         22 KMFNLFVSEEVKDFSFLSSKTVTE--------VLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQ-   92 (520)
Q Consensus        22 ~~l~~~i~~G~~~g~lVPdelv~~--------ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd-   92 (520)
                      ..+...+++|.    +|+......        .|.+.++.   .+.+|||+.|+.+.|+...   ...| .||+|.+|+ 
T Consensus        57 ~ef~~~i~~g~----fve~~~~~g~~YGt~~~~i~~~~~~---~~~~ild~~~~~~~~l~~~---~~~~-~vIfi~~~s~  125 (184)
T smart00072       57 EEFEDDIKSGL----FLEWGEYSGNYYGTSKETIRQVAEQ---GKHCLLDIDPQGVKQLRKA---QLYP-IVIFIAPPSS  125 (184)
T ss_pred             HHHHHHHHcCC----eEEEEEEcCcCcccCHHHHHHHHHc---CCeEEEEECHHHHHHHHHh---CCCc-EEEEEeCcCH
Confidence            55666677665    766544333        45555542   5789999999999998553   1222 789998665 


Q ss_pred             HHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         93 SLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        93 ~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ++|.+|+. |+.    .+.+.+.+||.......    ++|..-  =..|+.+ +.++.+.+++++|+.
T Consensus       126 ~~l~~rl~~R~~----~~~~~i~~rl~~a~~~~----~~~~~f--d~~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      126 EELERRLRGRGT----ETAERIQKRLAAAQKEA----QEYHLF--DYVIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHHHHHHhcCC----CCHHHHHHHHHHHHHHH----hhhccC--CEEEECc-CHHHHHHHHHHHHHh
Confidence            56999994 532    24677899999765543    233111  2445555 788899999888864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02796 D-glycerate 3-kinase

Probab=95.37  E-value=0.015  Score=60.74  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr  262 (520)
                      ..|.+|.|.|++||||||+|+.|+..+.    ....||++++.-
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL  141 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL  141 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence            4578999999999999999999998752    145677777654

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=95.36  E-value=0.71  Score=46.45  Aligned_cols=143  Identities=14%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      ..|+|.|..|||||+-.+.|-. . |+..+  +                            .+|.+++-+++.-......
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lED-l-Gyycv--D----------------------------NLPp~Llp~~~~~~~~~~~   49 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLED-L-GYYCV--D----------------------------NLPPQLLPKLADLMLTLES   49 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHHh-c-Ceeee--c----------------------------CCCHHHHHHHHHHHhhccc
Confidence            3689999999999999987643 3 54433  2                            3455556555542222101


Q ss_pred             cCCCcEEEEe----CCCCCHHHHH-HHHhhcCCCCCEEEecCChhhhhc-----cCCC--CCHHHHHHHHHHHHHHhHHH
Q psy11031        306 YTEADGIVID----GFPREMSQLI-DFENKYQIHPPMILIDCSKLVLHK-----GQID--NSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       306 ~~~~~G~ILD----GFPrt~~Qae-~l~~~~~~p~~VI~Ld~~~~~~~r-----~R~d--D~~e~~~~Rl~~f~~~~~~l  373 (520)
                      ...+-.+++|    .|+.++.++. .+.........|+||+.+++.+-+     +|..  .....+..-+..=++...|+
T Consensus        50 ~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL  129 (286)
T COG1660          50 RITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL  129 (286)
T ss_pred             CCceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH
Confidence            1224468888    3555554433 233221123569999999986521     2211  11111222222223333444


Q ss_pred             HHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      .+.-+     .+||.+ .++.++.+.|.+.+..
T Consensus       130 k~~A~-----~vIDTs~ls~~~Lr~~i~~~f~~  157 (286)
T COG1660         130 REIAD-----LVIDTSELSVHELRERIRTRFLG  157 (286)
T ss_pred             HHHhh-----hEeecccCCHHHHHHHHHHHHcc
Confidence            33221     357855 6788877777766654

>PRK09087 hypothetical protein; Validated

Probab=95.36  E-value=0.017  Score=57.11  Aligned_cols=37  Identities=19%  Similarity=0.143  Sum_probs=31.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .+.++|.|++|||||++++.+++.+ +..+++.+++..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~~~~~   80 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS-DALLIHPNEIGS   80 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc-CCEEecHHHcch
Confidence            3568999999999999999999887 888888865444

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.33  E-value=0.0096  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.836  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |+|.|+||+|||++|+.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998765

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=95.29  E-value=0.018  Score=60.80  Aligned_cols=38  Identities=32%  Similarity=0.423  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      .|+-++|.||||+|||++|+.+++.. +...+  +.+++..
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l-~~~~~~v~~~~l~~  194 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSELVR  194 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhC-CCCEEecchHHHHH
Confidence            46679999999999999999999986 65544  3334444

Many proteins may score above the trusted cutoff because an internal

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=95.26  E-value=0.045  Score=55.92  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC--------CCeeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP--------NWTQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~--------g~~~is~gdLlr  262 (520)
                      .-+++.|+||+||||+|+.+++.+.        .+..++..+++.
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~  103 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG  103 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence            3599999999999999987776431        134555556654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.26  E-value=0.013  Score=53.85  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++|+|+|+.||||||+++.|....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            579999999999999999998754

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=95.24  E-value=0.02  Score=58.92  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL  261 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl  261 (520)
                      .++.|+|+||.+||||-+|-.||+++ |...||++.+.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~-~~eIIs~DSmQ   38 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRL-GGEIISLDSMQ   38 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHc-CCcEEecchhh
Confidence            46789999999999999999999998 99999998553

>KOG0733|consensus

Probab=95.23  E-value=0.018  Score=63.51  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr  262 (520)
                      ..|-=|+++||||||||.+|+.+|.+- |+..||+.  +||.
T Consensus       543 ~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVKGPELlN  583 (802)
T KOG0733|consen  543 DAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVKGPELLN  583 (802)
T ss_pred             CCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeecCHHHHH
Confidence            346679999999999999999999985 77777764  8887

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.20  E-value=0.019  Score=61.49  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh--hhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL--GKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~--gdLlr  262 (520)
                      ..|+-|+|.||||||||++|+.++... +...+.+  .+++.
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l-~~~fi~i~~s~l~~  217 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHT-TATFIRVVGSEFVQ  217 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHHH
Confidence            346779999999999999999999986 6655443  34444

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=95.15  E-value=0.023  Score=58.52  Aligned_cols=37  Identities=14%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr  262 (520)
                      .+++|+|+||.|||||.+|-.||++. | ..||++  +++|
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~~-~-eIIsaDS~QvYr   41 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKGK-A-EIINVDSIQVYK   41 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC-C-cEEeccHHHHHC
Confidence            35689999999999999999999985 5 788887  4555

>KOG0651|consensus

Probab=95.15  E-value=0.033  Score=57.07  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHhhhhcccccCCcchHHHHhhhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLRYFANIEDDGEGLNSRIKSSVS  283 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr~~~~~~~~~t~~g~~i~~~l~  283 (520)
                      .-..|+.+.+.||||.|||.||+.++... |+..  ++.+.|..   ..+   .+.+..|++.+.
T Consensus       162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~m-g~nfl~v~ss~lv~---kyi---GEsaRlIRemf~  219 (388)
T KOG0651|consen  162 GIKPPKGLLLYGPPGTGKTLLARAVAATM-GVNFLKVVSSALVD---KYI---GESARLIRDMFR  219 (388)
T ss_pred             CCCCCceeEEeCCCCCchhHHHHHHHHhc-CCceEEeeHhhhhh---hhc---ccHHHHHHHHHH
Confidence            34567888999999999999999999987 6644  47777776   322   345566666543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.11  E-value=0.36  Score=45.77  Aligned_cols=86  Identities=12%  Similarity=0.071  Sum_probs=59.5

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      +..|+||- +...  ..+.......-.||+|++|.+++.+|+. |    +|.+++.+.+|+..+.        +|.. .-
T Consensus        90 ~~VI~~G~-~~~~--~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R----~~~~~~~i~~rl~r~~--------~~~~-ad  153 (186)
T PRK10078         90 FDVLVNGS-RAHL--PQARARYQSALLPVCLQVSPEILRQRLENR----GRENASEINARLARAA--------RYQP-QD  153 (186)
T ss_pred             CEEEEeCh-HHHH--HHHHHHcCCCEEEEEEeCCHHHHHHHHHHh----CCCCHHHHHHHHHHhh--------hhcc-CC
Confidence            45888887 2221  1223333455678999999999999994 4    3445667889986532        3432 33


Q ss_pred             EEEEeCCCChHHHHHHHHHHHHH
Q psy11031        137 LIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       137 l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ++.||.+++++++.++|.+++..
T Consensus       154 ~~vi~~~~s~ee~~~~i~~~l~~  176 (186)
T PRK10078        154 CHTLNNDGSLRQSVDTLLTLLHL  176 (186)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHhh
Confidence            67889889999999999988864

>KOG0730|consensus

Probab=95.07  E-value=0.017  Score=64.16  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=32.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh--hhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL--GKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~--gdLlr  262 (520)
                      ..|+-|++.|||||||||+|+.||..- ++..+++  .+|+.
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkgpEL~s  506 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKGPELFS  506 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccCHHHHH
Confidence            457789999999999999999999986 7777666  46666

>PRK09183 transposase/IS protein; Provisional

Probab=95.06  E-value=0.14  Score=51.72  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC--CC--CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY--PN--WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~--~g--~~~is~gdLlr  262 (520)
                      ...++|+||||+|||+++..|+...  .|  ..+++..+++.
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~  143 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL  143 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence            4568999999999999999985431  12  23445555553

>PRK10867 signal recognition particle protein; Provisional

Probab=95.03  E-value=0.14  Score=55.45  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..|.+|+++|++||||||.|.+||..
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~  123 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKY  123 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence            35789999999999999988888763

>PRK06620 hypothetical protein; Validated

Probab=94.96  E-value=0.025  Score=55.38  Aligned_cols=30  Identities=17%  Similarity=0.088  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ..+++.||||||||++++.+++.. +...++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS-NAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc-CCEEcc
Confidence            569999999999999999988875 654444

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=94.95  E-value=0.021  Score=55.38  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLL  261 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLl  261 (520)
                      ..+..++|.|++|||||++|+.++...    ..+.++++.++.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            446779999999999999999998653    134556665554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK12377 putative replication protein; Provisional

Probab=94.92  E-value=0.12  Score=51.79  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr  262 (520)
                      ..++|.|+||+|||++|..|+..+.    ....+++.+++.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~  142 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS  142 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence            4589999999999999999887531    234566666666

>PRK06526 transposase; Provisional

Probab=94.90  E-value=0.06  Score=54.15  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..++|+||||+|||++|..|+..
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~  121 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIR  121 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHH
Confidence            457999999999999999988654

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.86  E-value=0.31  Score=47.20  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=61.5

Q ss_pred             cEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcC--HHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031         59 AFLISGYPRNMRDVVEYSDKIKTINGVILIAWR--QSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG  135 (520)
Q Consensus        59 G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~p--d~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~  135 (520)
                      -.|+|.=   ..-+..+.+  ..||.+++|.+|  .+++.+|+. |+.    .+.+.+.+|+..+...+...-.     .
T Consensus       105 ~vi~~~~---~~g~~~l~~--~~pd~~~if~~pps~e~l~~Rl~~R~~----~~~~~~~~Rl~~~~~e~~~~~~-----~  170 (206)
T PRK14738        105 DVIVKVD---VQGAASIKR--LVPEAVFIFLAPPSMDELTRRLELRRT----ESPEELERRLATAPLELEQLPE-----F  170 (206)
T ss_pred             cEEEEcC---HHHHHHHHH--hCCCeEEEEEeCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhcccC-----C
Confidence            3678763   333333332  358888878775  568899994 432    2456889999988776543221     1


Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        136 MLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       136 ~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      -++.||++.++++++++|.++|....
T Consensus       171 ~~~iId~~~~~e~v~~~i~~~l~~~~  196 (206)
T PRK14738        171 DYVVVNPEDRLDEAVAQIMAIISAEK  196 (206)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            37889999999999999999998653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.85  E-value=0.015  Score=60.65  Aligned_cols=113  Identities=17%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cC-----CcchHHHHhh-----------hhcC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DG-----EGLNSRIKSS-----------VSAG  285 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~-----t~~g~~i~~~-----------l~~G  285 (520)
                      ...-+++++||.||||||+.+.||    |+.-++.|+++=   .... +.     -.++...+.+           +.-|
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IA----GLe~~~~G~I~i---~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~   99 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIA----GLEEPTSGEILI---DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG   99 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh----CCCCCCCceEEE---CCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhh
Confidence            445689999999999999999997    677777777654   1110 11     0111111111           1000


Q ss_pred             ---CccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHH----HHHHHHhhcCCCCCEEEecCChhh
Q psy11031        286 ---DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMS----QLIDFENKYQIHPPMILIDCSKLV  346 (520)
Q Consensus       286 ---~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~----Qae~l~~~~~~p~~VI~Ld~~~~~  346 (520)
                         .-+|.+-+.+-+++..+    ..+=.-+||.+|+.+.    |--++-.++-..+.|++||-|...
T Consensus       100 Lk~~~~~k~ei~~rV~eva~----~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn  163 (338)
T COG3839         100 LKLRGVPKAEIDKRVKEVAK----LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSN  163 (338)
T ss_pred             hhhCCCchHHHHHHHHHHHH----HcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence               01122222222222222    1234567888997643    555677777777889999988753

>KOG0734|consensus

Probab=94.85  E-value=0.33  Score=53.22  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      .+-|+=|++.||||.|||.+|+.+|-+- |.+.+.+
T Consensus       334 GKLPKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~  368 (752)
T KOG0734|consen  334 GKLPKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYA  368 (752)
T ss_pred             CcCCCceEEeCCCCCchhHHHHHhhccc-CCCeEec
Confidence            4567789999999999999999999986 8888765

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=94.83  E-value=0.043  Score=53.58  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC-----CCCeeeehh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY-----PNWTQISLG  258 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~-----~g~~~is~g  258 (520)
                      +....++|.|+||||||++|.+++...     ....++|+.
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e   57 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE   57 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence            346789999999999999998765321     145566653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK04195 replication factor C large subunit; Provisional

Probab=94.82  E-value=0.028  Score=61.66  Aligned_cols=32  Identities=28%  Similarity=0.644  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ++.++|.||||+||||+|+.|++.+ |+.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el-~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY-GWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEE
Confidence            6679999999999999999999997 8766644

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.82  E-value=0.024  Score=49.16  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.||+||||+...|...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999864

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13949 shikimate kinase; Provisional

Probab=94.81  E-value=0.52  Score=44.26  Aligned_cols=106  Identities=9%  Similarity=0.059  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcEEEe---CCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccc----
Q psy11031         37 FLSSKTVTEVLMLEMKMSPAAKAFLIS---GYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVI----  109 (520)
Q Consensus        37 lVPdelv~~ll~~~l~~~~~~~G~ILD---GFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d----  109 (520)
                      ..-.++-.+++.+ +..   ..+||+.   |+|-+..+...+..    -+.||+|++|-+.+.+|+..... +|..    
T Consensus        54 ~~fr~~e~~~l~~-l~~---~~~~vis~Ggg~~~~~~~~~~l~~----~~~vi~L~~~~~~~~~Ri~~~~~-~RP~~~~~  124 (169)
T PRK13949         54 AVFRELERNMLHE-VAE---FEDVVISTGGGAPCFFDNMELMNA----SGTTVYLKVSPEVLFVRLRLAKQ-QRPLLKGK  124 (169)
T ss_pred             HHHHHHHHHHHHH-HHh---CCCEEEEcCCcccCCHHHHHHHHh----CCeEEEEECCHHHHHHHHhcCCC-CCCCCCCC
Confidence            4555566666655 432   3478884   88888887744432    36899999999999999953211 3431    


Q ss_pred             -hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHH
Q psy11031        110 -LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTA  156 (520)
Q Consensus       110 -~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~  156 (520)
                       .+.+...+..-++.   -..+|++..  +.||.+ .+++++.+.|.+.
T Consensus       125 ~~~~~~~~i~~l~~~---R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        125 SDEELLDFIIEALEK---RAPFYRQAK--IIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             ChHHHHHHHHHHHHH---HHHHHHhCC--EEEECCCCCHHHHHHHHHHh
Confidence             22222233333333   334566643  556765 4888888887654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.80  E-value=0.059  Score=57.51  Aligned_cols=27  Identities=26%  Similarity=0.281  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..|.+|+++|++|+||||.+.+||..|
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            347799999999999999999999764

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=94.79  E-value=0.026  Score=62.14  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ..|+-+++.||||+|||++|+.|+... +...+++
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i  119 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSI  119 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeec
Confidence            345669999999999999999999986 7666544

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.78  E-value=0.029  Score=53.01  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..++++||+|+|||.+|+.|++.+
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l   27 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELL   27 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.78  E-value=0.25  Score=45.89  Aligned_cols=79  Identities=10%  Similarity=0.086  Sum_probs=50.6

Q ss_pred             CCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccc----------hHHHHHHHHHHHhccchHHHHhhh
Q psy11031         65 YPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVI----------LSLARMELANFYQNVTPVTDFFDQ  133 (520)
Q Consensus        65 FPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d----------~e~i~~Rl~~Y~~~t~pvi~~Y~~  133 (520)
                      ++-+..+. .++.   ..+.+|+|++|.+++.+|+. +.....|..          .+.+++|...|.+..         
T Consensus        81 ~vl~~~~~-~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a---------  147 (171)
T PRK03731         81 IILTEENR-HFMR---NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVA---------  147 (171)
T ss_pred             ccCCHHHH-HHHH---hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhC---------
Confidence            45444443 3332   35679999999999999994 322112221          234444544444322         


Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        134 RGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       134 ~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                         .++||+++++++|+.+|.+.|.+
T Consensus       148 ---~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        148 ---HHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             ---CEEEcCCCCHHHHHHHHHHHHhc
Confidence               27899999999999999988754

>KOG0737|consensus

Probab=94.78  E-value=0.11  Score=54.56  Aligned_cols=128  Identities=16%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      ..|+-|++.||||+|||-+|+.++++- |...|  +++.|..+|.                   |+      -.++++ .
T Consensus       125 ~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fInv~~s~lt~KWf-------------------gE------~eKlv~-A  177 (386)
T KOG0737|consen  125 RPPKGILLYGPPGTGKTMLAKAIAKEA-GANFINVSVSNLTSKWF-------------------GE------AQKLVK-A  177 (386)
T ss_pred             cCCccceecCCCCchHHHHHHHHHHHc-CCCcceeeccccchhhH-------------------HH------HHHHHH-H
Confidence            357789999999999999999999985 66555  4444444111                   11      011111 1


Q ss_pred             HhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhC
Q psy11031        301 MKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVE  380 (520)
Q Consensus       301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~  380 (520)
                      +-                       .|-.  +..|.+||+|--+..++.++..| -|+.+.--.+|...+..+..-=  .
T Consensus       178 vF-----------------------slAs--Kl~P~iIFIDEvds~L~~R~s~d-HEa~a~mK~eFM~~WDGl~s~~--~  229 (386)
T KOG0737|consen  178 VF-----------------------SLAS--KLQPSIIFIDEVDSFLGQRRSTD-HEATAMMKNEFMALWDGLSSKD--S  229 (386)
T ss_pred             HH-----------------------hhhh--hcCcceeehhhHHHHHhhcccch-HHHHHHHHHHHHHHhccccCCC--C
Confidence            11                       0111  33577899887666555444433 3444444456776665542211  1


Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        381 TRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       381 ~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ..++++=|...|-++.+.|.+.+-.
T Consensus       230 ~rVlVlgATNRP~DlDeAiiRR~p~  254 (386)
T KOG0737|consen  230 ERVLVLGATNRPFDLDEAIIRRLPR  254 (386)
T ss_pred             ceEEEEeCCCCCccHHHHHHHhCcc
Confidence            2477788888898898888877643

>KOG0635|consensus

Probab=94.77  E-value=0.053  Score=50.14  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=61.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY  298 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~  298 (520)
                      ..+..+||+.|..||||||+|-.|.+.++   .+.++=-||=+|   .-+..  .+|-..++.-++=..+  .-|.+|+.
T Consensus        28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR---hGLN~--DL~F~a~dR~ENIRRi--geVaKLFA  100 (207)
T KOG0635|consen   28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR---HGLNK--DLGFKAEDRNENIRRI--GEVAKLFA  100 (207)
T ss_pred             cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc---ccccc--ccCcchhhhhhhHHHH--HHHHHHHh
Confidence            35678999999999999999988877542   345566667777   43322  1221111110000000  01222221


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK  349 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r  349 (520)
                      +.-.    - .-.-+|.-|-.+.+++..|....  +..=+|+|||.++...
T Consensus       101 Dag~----i-ciaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~  144 (207)
T KOG0635|consen  101 DAGV----I-CIASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEA  144 (207)
T ss_pred             ccce----e-eeehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhc
Confidence            1000    0 01123556778888888776432  2234899999987643

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=94.74  E-value=0.03  Score=60.03  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr  262 (520)
                      ..|.+|.|.|+.||||||+++.|...+.    ....||++++.-
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL  253 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL  253 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence            3578899999999999999999976431    256678887764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=94.73  E-value=0.026  Score=56.27  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +..++|.|++||||||+++.++..+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=94.71  E-value=0.76  Score=43.21  Aligned_cols=155  Identities=16%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHhhhhcccccCCcchHH-----HHhhhhc----------CC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLRYFANIEDDGEGLNSR-----IKSSVSA----------GD  286 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr~~~~~~~~~t~~g~~-----i~~~l~~----------G~  286 (520)
                      ....|+|+||.|+||-|+.......+.+-  .|+----+-|   .. ..+++-...     ....-..          |-
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITR---pa-~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL   79 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITR---PA-DAGGEDHDALSEAEFNTRAGQGAFALSWQAHGL   79 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecc---cC-CCCcccccccCHHHHHHHhhcCceeEEehhcCc
Confidence            36789999999999999998877765333  2222212222   11 112111110     0000001          10


Q ss_pred             --ccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHH
Q psy11031        287 --FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRR  361 (520)
Q Consensus       287 --~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~  361 (520)
                        -+|.++     ...|.     .+.-+|..|--.-+-++..   .+. .-.|+.|.++++++.+   .|...+.+.+..
T Consensus        80 ~Ygip~eI-----d~wl~-----~G~vvl~NgSRa~Lp~arr---ry~-~Llvv~ita~p~VLaqRL~~RGREs~eeI~a  145 (192)
T COG3709          80 SYGIPAEI-----DLWLA-----AGDVVLVNGSRAVLPQARR---RYP-QLLVVCITASPEVLAQRLAERGRESREEILA  145 (192)
T ss_pred             cccCchhH-----HHHHh-----CCCEEEEeccHhhhHHHHH---hhh-cceeEEEecCHHHHHHHHHHhccCCHHHHHH
Confidence              133321     22222     2334555554333334332   222 2348889998887542   455568889999


Q ss_pred             HHHHHHHHhHHHHHHhh-hCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        362 RLELFRERTLPMLRAMD-VETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       362 Rl~~f~~~~~~l~~~y~-~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      ||..-        ..|. ..+.+.+||.+...+.--+.+...+.
T Consensus       146 RL~R~--------a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~  181 (192)
T COG3709         146 RLARA--------ARYTAGPGDVTTIDNSGELEDAGERLLALLH  181 (192)
T ss_pred             HHHhh--------cccccCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence            88731        2232 23568899999998877776666554

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.71  E-value=0.022  Score=51.39  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +++|.|+|||||||+|..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            37899999999999999997653

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.039  Score=60.55  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ..+..+++.||||+|||.+|+.++... ++..+  ...+++-
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~~~l~s  314 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKGSELLS  314 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeCHHHhc
Confidence            456689999999999999999999954 55554  4456665

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.1  Score=54.53  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee--hhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS--LGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is--~gdLlr  262 (520)
                      ..|+=|++.||||+|||.+|+.+|... +...|.  -.+|++
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T-~AtFIrvvgSElVq  223 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQT-DATFIRVVGSELVQ  223 (406)
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc-CceEEEeccHHHHH
Confidence            456779999999999999999999986 666653  335555

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.69  E-value=0.079  Score=55.45  Aligned_cols=26  Identities=23%  Similarity=0.548  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..++|.|+||+|||++++.+.+.
T Consensus        38 ~~~~~i~I~G~~GtGKT~l~~~~~~~   63 (365)
T TIGR02928        38 SRPSNVFIYGKTGTGKTAVTKYVMKE   63 (365)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999998864

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=94.67  E-value=0.028  Score=58.35  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      .+..++|.||||+||||+|+.+++.+ ++..
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l-~~~~   79 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEM-GVNI   79 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHh-CCCe
Confidence            35578999999999999999999987 7643

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=94.66  E-value=0.031  Score=60.49  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      ..|.-++|.||||+|||++|+.++... +...+
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el-~~~fi  246 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANET-SATFL  246 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh-CCCEE
Confidence            456779999999999999999999986 65444

>TIGR00959 ffh signal recognition particle protein

Probab=94.65  E-value=0.21  Score=54.01  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|.+|++.|++||||||.|.+||..
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~  122 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYY  122 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence            35789999999999999998888865

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=94.65  E-value=0.029  Score=57.26  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      .+..++|.||||+|||++|+.+++.+ +..
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~-~~~   57 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEM-GVN   57 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence            34568999999999999999999986 643

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=94.63  E-value=0.025  Score=60.82  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ..|+|.||||||||++|+.|++.+ +++.+.+
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~i  139 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARIL-DVPFAIA  139 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHh-CCCceec
Confidence            459999999999999999999886 7665544

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=94.63  E-value=0.66  Score=46.04  Aligned_cols=161  Identities=16%  Similarity=0.146  Sum_probs=88.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIVYAE  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll~~~  300 (520)
                      ..|.+|+|.|..||||+...++|.+.+ +=.++.+-.+-.-..++. ...-++.--+.+=..|+.  .--.....++..+
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~l-DPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~r  106 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHL-NPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVER  106 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhc-CCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHHH
Confidence            458899999999999999999999876 444444321111000110 001111111111122321  1124455555555


Q ss_pred             HhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhhc---cCCCC-------CHH--HHHHHHH
Q psy11031        301 MKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLHK---GQIDN-------SVS--AFRRRLE  364 (520)
Q Consensus       301 l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~r---~R~dD-------~~e--~~~~Rl~  364 (520)
                      +.        |++-+ -|.+-.+++..||+.+.....+   |||.++.+...+   .|.+|       ++.  .-+++.+
T Consensus       107 v~--------~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd  178 (230)
T TIGR03707       107 VM--------GFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWD  178 (230)
T ss_pred             hc--------CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHH
Confidence            55        11111 1456678899999988765553   678998864321   12111       222  2345677


Q ss_pred             HHHHHhHHHHHHhhh-CCCEEEEECCCCHH
Q psy11031        365 LFRERTLPMLRAMDV-ETRLTIVDGDTQLP  393 (520)
Q Consensus       365 ~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e  393 (520)
                      .|......+++.=+. ..-+++|+|+....
T Consensus       179 ~y~~a~e~~l~~T~t~~APW~iI~a~dk~~  208 (230)
T TIGR03707       179 DYSRAKDEMFARTDTPEAPWTVVRSDDKKR  208 (230)
T ss_pred             HHHHHHHHHHHhcCCCCCCeEEEcCCCHHH
Confidence            777777777664332 34699999997643

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>KOG0731|consensus

Probab=94.62  E-value=0.022  Score=64.87  Aligned_cols=52  Identities=17%  Similarity=0.329  Sum_probs=38.9

Q ss_pred             cccCccccccccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031        209 VVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR  262 (520)
Q Consensus       209 ~~~~~~~~~~~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr  262 (520)
                      |+-||..|. -+....|+=++|+||||+|||.+|+.+|.+- |++.+|+.  +++.
T Consensus       329 fLKNP~~Y~-~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEFvE  382 (774)
T KOG0731|consen  329 FLKNPEQYQ-ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEFVE  382 (774)
T ss_pred             HhcCHHHHH-HcCCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHHHH
Confidence            444554331 1346678889999999999999999999986 99998774  4444

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.61  E-value=0.024  Score=51.83  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |+|.|+|+.+|||||+|+.|...+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999997754

>cd04163 Era Era subfamily

Probab=94.60  E-value=0.028  Score=50.42  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|.++|++||||||++..|...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG3062|consensus

Probab=94.60  E-value=0.062  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.|+|+|-|+|||||.|+.|.+.+
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l   25 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREAL   25 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHH
Confidence            468999999999999999988754

>PRK08181 transposase; Validated

Probab=94.57  E-value=0.17  Score=51.38  Aligned_cols=38  Identities=16%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh---C-CCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD---Y-PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k---~-~g~~~is~gdLlr  262 (520)
                      ...++|+||||+|||.+|..|+..   . ....++++.+|+.
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~  147 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ  147 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence            356999999999999999998742   1 1355677777776

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.57  E-value=0.12  Score=51.85  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|.|++|+||||+|..+++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            45788999999999999999998866

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.57  E-value=0.02  Score=57.91  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC--C--CeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYP--N--WTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~--g--~~~is~gdLlr  262 (520)
                      +|.|.|++||||||+|+.|++.+.  |  ...|+.++..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            488999999999999999987651  2  45677766665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.56  E-value=0.028  Score=58.37  Aligned_cols=27  Identities=33%  Similarity=0.577  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|+||+||||||.+.+|+..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999999998754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.56  E-value=0.023  Score=55.51  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL  261 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl  261 (520)
                      -.+.-+++|+||.||||||+.+.|.    ++.-++.|++.
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN----~LE~~~~G~I~   60 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLN----GLEEPDSGSIT   60 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHH----CCcCCCCceEE
Confidence            3457789999999999999999875    34444444443

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=94.54  E-value=0.032  Score=59.97  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      ..|+|.||||||||++|+.|++.+ ++++.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l-~~pf~  145 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARIL-NVPFA  145 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhc-CCCeE
Confidence            469999999999999999999886 76664

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PHA02244 ATPase-like protein

Probab=94.52  E-value=0.028  Score=59.32  Aligned_cols=36  Identities=17%  Similarity=0.448  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .-|+|.||||||||++|+.|+..+ +...+.+..++.
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d  155 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMD  155 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChH
Confidence            348899999999999999999986 888887765544

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.51  E-value=0.029  Score=52.26  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=18.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++.++|.|++|+|||++.+.+.+.+
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999877654

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.044  Score=61.66  Aligned_cols=41  Identities=22%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr  262 (520)
                      ..+.+++|+.||||.|||++++.||+..- .|+.+|+|-+=-
T Consensus       347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrD  388 (782)
T COG0466         347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRD  388 (782)
T ss_pred             cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcccc
Confidence            45679999999999999999999999741 467889988755

>TIGR00101 ureG urease accessory protein UreG

Probab=94.48  E-value=0.033  Score=53.90  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |.+|.|.|++||||||+++++.+.+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=94.47  E-value=0.03  Score=56.85  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.++|++|+||||.|.+||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            346789999999999999999998654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=94.47  E-value=0.04  Score=50.96  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG  258 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g  258 (520)
                      ..=++|.|++||||||+|..|.++  |+..++-+
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~--g~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR--GHRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc--CCeEEECC
Confidence            355999999999999999988875  77777554

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity

Probab=94.47  E-value=0.071  Score=50.26  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=25.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC-CCCeeeehhhHH
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY-PNWTQISLGKLL  261 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~-~g~~~is~gdLl  261 (520)
                      |+|+|+..||||..|+.++.++ ....+|.++...
T Consensus         1 ilv~GG~rSGKS~~Ae~la~~~~~~~~YiAT~~~~   35 (167)
T PF02283_consen    1 ILVTGGARSGKSSFAERLALSFGGPVTYIATARPF   35 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS--SCEEEEESSHHH
T ss_pred             CEEeCCCCcchHHHHHHHHHhcCCCcEEEeCCCCC
Confidence            7899999999999999999875 244556554444

The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=94.40  E-value=0.036  Score=58.63  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      .....-.++.||||+||||+|+.|+... +.....+
T Consensus        45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~   79 (436)
T COG2256          45 AGHLHSMILWGPPGTGKTTLARLIAGTT-NAAFEAL   79 (436)
T ss_pred             cCCCceeEEECCCCCCHHHHHHHHHHhh-CCceEEe
Confidence            4456668999999999999999999976 6655443

>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]

Probab=94.39  E-value=0.11  Score=48.66  Aligned_cols=83  Identities=14%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC-CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY-PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~-~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .|||+|+.-||||+.|++++.+. ..+.||.++.-+.         .+                       +.+||..++
T Consensus         2 ~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~D---------~E-----------------------m~~RI~~Hr   49 (175)
T COG2087           2 MILVTGGARSGKSSFAEALAGESGGQVLYVATGRAFD---------DE-----------------------MQERIAHHR   49 (175)
T ss_pred             eEEEecCccCCchHHHHHHHHhhCCceEEEEecCCCC---------HH-----------------------HHHHHHHHH
Confidence            59999999999999999999873 2444555433222         11                       234444323


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK  344 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~  344 (520)
                      ..-..+|...--|.++.-  .|.. ...+..++++||=-
T Consensus        50 ~rRp~~W~tvE~~~~l~~--~L~~-~~~~~~~VLvDcLt   85 (175)
T COG2087          50 ARRPEHWRTVEAPLDLAT--LLEA-LIEPGDVVLVDCLT   85 (175)
T ss_pred             hcCCCcceEEeccccHHH--HHHh-cccCCCEEEEEcHH
Confidence            333456755554555433  3333 23355799999954

>KOG1533|consensus

Probab=94.38  E-value=0.02  Score=56.41  Aligned_cols=20  Identities=45%  Similarity=0.710  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~  247 (520)
                      -+|+|||||||||.|.-..+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~   24 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQ   24 (290)
T ss_pred             eEEEcCCCCCccchhhhHHH
Confidence            57899999999999976554

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.35  E-value=0.18  Score=55.67  Aligned_cols=31  Identities=13%  Similarity=0.088  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      +.+.-+++.||||+||||.|+.+++.+ ++.+
T Consensus        41 ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~   71 (507)
T PRK06645         41 RLAGGYLLTGIRGVGKTTSARIIAKAV-NCSA   71 (507)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh-cCcc
Confidence            446679999999999999999999987 6644

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=94.34  E-value=0.17  Score=49.08  Aligned_cols=89  Identities=11%  Similarity=0.039  Sum_probs=64.1

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      ..+++-+-|- +-++ .+.   ..+|.||++.||.++..+|+ .|+    +.+.+.+.+|+..+..+...+ +.+     
T Consensus       115 ~~vvv~e~pL-L~e~-~~~---~~~d~ii~V~a~~e~~~~Rl~~R~----~~s~e~~~~Ri~~q~~~~~~~-~~a-----  179 (208)
T PRK14731        115 KRILVKEAAI-LFES-GGD---AGLDFIVVVAADTELRLERAVQRG----MGSREEIRRRIAAQWPQEKLI-ERA-----  179 (208)
T ss_pred             CCEEEEEeee-eeec-Cch---hcCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHHcCChHHHH-HhC-----
Confidence            3566655562 2222 111   25799999999999999999 453    336788899999887776665 221     


Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        137 LIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       137 l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      -+.|+.+.+.+++++++..+++.++
T Consensus       180 d~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        180 DYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHH
Confidence            3568889999999999999987765

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.33  E-value=0.026  Score=59.28  Aligned_cols=116  Identities=15%  Similarity=0.167  Sum_probs=65.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh---cccccCCcchHHHHhh-----------hhc---
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA---NIEDDGEGLNSRIKSS-----------VSA---  284 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~---~~~~~~t~~g~~i~~~-----------l~~---  284 (520)
                      -...-++.++||.||||||+.+.||    |+...+.|.++-...   ......-.+|...++|           +.-   
T Consensus        28 i~~Gef~~lLGPSGcGKTTlLR~IA----Gfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk  103 (352)
T COG3842          28 IKKGEFVTLLGPSGCGKTTLLRMIA----GFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK  103 (352)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHh----CCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence            3446789999999999999999998    666666665543000   0111111222222221           111   


Q ss_pred             -CCccchHHHHHHHHHHHhccccCCCcEEEEeCCCCC----HHHHHHHHhhcCCCCCEEEecCChh
Q psy11031        285 -GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPRE----MSQLIDFENKYQIHPPMILIDCSKL  345 (520)
Q Consensus       285 -G~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt----~~Qae~l~~~~~~p~~VI~Ld~~~~  345 (520)
                       ....+++.+.+.+.+.+.  ...-..  .-+.+|..    -.|.-+|.+++...+.|++||=|..
T Consensus       104 ~~~~~~~~~i~~rv~e~L~--lV~L~~--~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS  165 (352)
T COG3842         104 VRKKLKKAEIKARVEEALE--LVGLEG--FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS  165 (352)
T ss_pred             hcCCCCHHHHHHHHHHHHH--HcCchh--hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence             222344444444455454  111111  45566755    3477788888888888999997653

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=94.33  E-value=0.053  Score=51.42  Aligned_cols=34  Identities=9%  Similarity=0.287  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      +|.|.+..|||++++|++||+++ |+.+++- +++.
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~L-g~~~~d~-~ii~   34 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKL-GYPYYDR-EIIE   34 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHC-T--EE-H-HHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHc-CCccCCH-HHHH
Confidence            58899999999999999999998 9999998 7777

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=94.31  E-value=0.7  Score=46.79  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=88.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIVYAE  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll~~~  300 (520)
                      ..|.+|+|.|..||||+...++|.+.+ +=.++.+-.+-.-..++ ....-++.--+.+=..|+.  .--....+++..+
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~l-DPRg~~V~s~~~Pt~eE-~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~r  131 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGV-NPQGCQVTSFKAPSAEE-LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVVR  131 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhc-CCCeeEEEeCCCCCHHH-HcCchHHHHHHhCCCCCeEEEEcCccccchhhhh
Confidence            468999999999999999999999875 44444332111100000 0111112211111122321  1123444555555


Q ss_pred             HhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhhc---cCCC-------CC--HHHHHHHHH
Q psy11031        301 MKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLHK---GQID-------NS--VSAFRRRLE  364 (520)
Q Consensus       301 l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~r---~R~d-------D~--~e~~~~Rl~  364 (520)
                      +.        |.+-+ -|.+.++++..||+.+.....+   |||+++.+...+   .|.+       -+  .-.-+++++
T Consensus       132 v~--------g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd  203 (264)
T TIGR03709       132 VH--------GLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWD  203 (264)
T ss_pred             hc--------CCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHH
Confidence            54        11111 2455678888999988755543   678998864321   1111       12  223355678


Q ss_pred             HHHHHhHHHHHHhhh-CCCEEEEECCCCHH
Q psy11031        365 LFRERTLPMLRAMDV-ETRLTIVDGDTQLP  393 (520)
Q Consensus       365 ~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e  393 (520)
                      .|......++..=.. ..-+++|+|+....
T Consensus       204 ~y~~a~e~~l~~T~t~~APW~iI~a~dk~~  233 (264)
T TIGR03709       204 DYMEAYEDALTATSTKHAPWYVVPADDKWF  233 (264)
T ss_pred             HHHHHHHHHHHhcCCCCCCeEEEcCCCHHH
Confidence            888877777765332 35699999997644

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>COG3911 Predicted ATPase [General function prediction only]

Probab=94.29  E-value=0.054  Score=50.02  Aligned_cols=30  Identities=17%  Similarity=0.428  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      +-+++++.|+||+||||+...|++.  |+..+
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~--Gfatv   37 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARA--GFATV   37 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHc--Cceee
Confidence            3478999999999999999999986  55444

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=94.27  E-value=0.039  Score=53.70  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      --+++.|+||||||++|++|..-++.+
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lLP~l   49 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLLPPL   49 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence            469999999999999999999866433

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.16  E-value=0.038  Score=53.26  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .|+|.||+||||||++..|...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999887765

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14974 cell division protein FtsY; Provisional

Probab=94.16  E-value=0.037  Score=57.98  Aligned_cols=40  Identities=25%  Similarity=0.405  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC--CC-eeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NW-TQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~-~~is~gdLlr  262 (520)
                      .+|.+|+|+|+|||||||.+.+|+..+.  |. +.+..+|.+|
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R  180 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR  180 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence            3578999999999999998888876431  33 2234446555

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=94.15  E-value=0.65  Score=51.04  Aligned_cols=174  Identities=11%  Similarity=0.141  Sum_probs=93.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIV  297 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll  297 (520)
                      ...|.+|+|.|..||||+++.++|.+.+-  |+...+++.=-.   ++ ....-++.--+.+=..|+.  .--.....++
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~---eE-~~~~flwRfw~~lP~~G~I~IFdRSWY~~vl  112 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSD---EE-RERPPMWRFWRRLPPKGKIGIFFGSWYTRPL  112 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCH---HH-hcCcHHHHHHHhCCCCCeEEEEcCcccchhh
Confidence            45688999999999999999999998751  333333321111   00 0111111111111122321  1123445555


Q ss_pred             HHHHhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhh-c--cCCCC-------CHHH--HHH
Q psy11031        298 YAEMKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLH-K--GQIDN-------SVSA--FRR  361 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~-r--~R~dD-------~~e~--~~~  361 (520)
                      ..++.        |++=+ -+.+-.+++..||+.+.....+   |||+++.+... |  .|.+|       +++-  -++
T Consensus       113 verv~--------g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~  184 (493)
T TIGR03708       113 IERLE--------GRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLK  184 (493)
T ss_pred             HHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHH
Confidence            55544        11111 1345577888999988755543   67999886432 1  12211       2222  345


Q ss_pred             HHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHH---HHHHHHHHHHHHH
Q psy11031        362 RLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQ---VREEFERVLKKII  407 (520)
Q Consensus       362 Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~---V~~~I~~~I~~~i  407 (520)
                      +...|......++..=.. ..-+++|+|+.-...   |.+.|...|...+
T Consensus       185 ~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~l  234 (493)
T TIGR03708       185 VYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRARL  234 (493)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            577888777777664332 246999999976433   4444444444443

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=94.12  E-value=0.039  Score=57.69  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+.+|.|.|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999876643

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.09  E-value=0.25  Score=54.03  Aligned_cols=29  Identities=14%  Similarity=0.173  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      .+.-+++.||||+||||+|+.+++.+ ++.
T Consensus        39 i~ha~Lf~GP~GtGKTTlAriLAk~L-nce   67 (484)
T PRK14956         39 IGHAYIFFGPRGVGKTTIARILAKRL-NCE   67 (484)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc-Ccc
Confidence            34568999999999999999999986 664

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=94.05  E-value=0.036  Score=51.98  Aligned_cols=33  Identities=9%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCC-CeeeehhhHH
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPN-WTQISLGKLL  261 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g-~~~is~gdLl  261 (520)
                      |+=++.+||||||+|..|++-| | |.|+--+++-
T Consensus         2 lvPIAtiGCGKTTva~aL~~LF-g~wgHvQnDnI~   35 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLF-GEWGHVQNDNIT   35 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHc-CCCCccccCCCC
Confidence            4557899999999999999987 8 9998776663

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR03689 pup_AAA proteasome ATPase

Probab=94.02  E-value=0.039  Score=60.85  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..|+-|+|.||||+|||++|+.+++.+
T Consensus       214 ~~p~GILLyGPPGTGKT~LAKAlA~eL  240 (512)
T TIGR03689       214 KPPKGVLLYGPPGCGKTLIAKAVANSL  240 (512)
T ss_pred             CCCcceEEECCCCCcHHHHHHHHHHhh
Confidence            346679999999999999999999975

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=94.02  E-value=0.049  Score=58.54  Aligned_cols=32  Identities=13%  Similarity=0.158  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      .+..++|.||||+||||+|+.|++.. +...+.
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~-~~~~~~   66 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGAT-DAPFEA   66 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEE
Confidence            34568889999999999999999875 554443

>cd04155 Arl3 Arl3 subfamily

Probab=94.01  E-value=0.048  Score=50.24  Aligned_cols=25  Identities=8%  Similarity=0.240  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|++||||||+.+.|...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            3678999999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK04040 adenylate kinase; Provisional

Probab=94.00  E-value=0.63  Score=44.58  Aligned_cols=141  Identities=8%  Similarity=-0.067  Sum_probs=73.1

Q ss_pred             cCcccCcHHHHHHHHHHccC-----CCCCCCCHH---HHHHHHHHHHhcCCCCCcEEEeCCCC--CHH------hHHHHH
Q psy11031         13 DFPSHRNPLKMFNLFVSEEV-----KDFSFLSSK---TVTEVLMLEMKMSPAAKAFLISGYPR--NMR------DVVEYS   76 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G~-----~~g~lVPde---lv~~ll~~~l~~~~~~~G~ILDGFPR--t~~------QA~~~~   76 (520)
                      ++. +++.|+.++.......     +.-.-+|.+   -+..+..+++.+......+||||..-  |..      ....+ 
T Consensus        29 ~~~-~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~-  106 (188)
T PRK04040         29 DYK-IVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVL-  106 (188)
T ss_pred             CCe-EEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHH-
Confidence            455 7888998776654432     000001111   12223344444323344589998321  111      22122 


Q ss_pred             HhcCCcCEEEEEEcCHHHHHHHhhhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031         77 DKIKTINGVILIAWRQSLLERQIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR  154 (520)
Q Consensus        77 ~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~  154 (520)
                      . ...||++|+|.++-+++.+|..+...-+|.  +.+.+..|++.-.....- ..+|...-.++.+|-+...++-+.++.
T Consensus       107 ~-~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~  184 (188)
T PRK04040        107 E-ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIV  184 (188)
T ss_pred             h-hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence            2 248999999999977655444221111232  466777776654442221 223333334566776666888888887


Q ss_pred             HHH
Q psy11031        155 TAV  157 (520)
Q Consensus       155 ~~l  157 (520)
                      ++|
T Consensus       185 ~ii  187 (188)
T PRK04040        185 EVL  187 (188)
T ss_pred             HHh
Confidence            765

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=93.99  E-value=0.1  Score=51.59  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=19.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVL  246 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La  246 (520)
                      ....++|.|+|||||||+|.+++
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~   45 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLA   45 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34589999999999999986554

>PRK13976 thymidylate kinase; Provisional

Probab=93.96  E-value=2.3  Score=41.39  Aligned_cols=141  Identities=8%  Similarity=-0.042  Sum_probs=75.2

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh---c---C--CCCCcEEEeCCCCCHH------------
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK---M---S--PAAKAFLISGYPRNMR------------   70 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~---~---~--~~~~G~ILDGFPRt~~------------   70 (520)
                      +...|.++.+|+.++.++....   .+=|-....=....|..   +   +  ...+-+|.|-|--+--            
T Consensus        35 ~~~eP~~~~~g~~ir~~l~~~~---~~~~~~~~llf~a~R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~  111 (209)
T PRK13976         35 LTREPGGTSFNELVRGLLLSLK---NLDKISELLLFIAMRREHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLS  111 (209)
T ss_pred             EeeCCCCCHHHHHHHHHHcCCc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHH
Confidence            3346677889999999887522   12222221111111111   0   0  1234467777764421            


Q ss_pred             hHHHHHH--hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeC---CCC
Q psy11031         71 DVVEYSD--KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNG---ERN  145 (520)
Q Consensus        71 QA~~~~~--~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida---~~~  145 (520)
                      -...+..  ....||++|+|++|-+++.+|+..... ...+.+-..+--+.|.+-    .+.|.  ..++.||+   .++
T Consensus       112 ~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~-e~~~~~~l~~v~~~Y~~l----~~~~~--~~~~~id~~~~~~~  184 (209)
T PRK13976        112 LIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGY-EFMDLEFYDKVRKGFREI----VIKNP--HRCHVITCIDAKDN  184 (209)
T ss_pred             HHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccch-hcccHHHHHHHHHHHHHH----HHhCC--CCeEEEECCCCccC
Confidence            1111111  123699999999999999999842111 011122222222233222    11122  24778898   456


Q ss_pred             ---hHHHHHHHHHHHHHHh
Q psy11031        146 ---PVEVYADFRTAVLKIL  161 (520)
Q Consensus       146 ---~eeV~~~i~~~l~~~~  161 (520)
                         +++|.++|.+.+...+
T Consensus       185 ~~~~e~v~~~i~~~i~~~~  203 (209)
T PRK13976        185 IEDINSVHLEIVKLLHAVT  203 (209)
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence               9999999999998776

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=93.95  E-value=0.056  Score=59.80  Aligned_cols=31  Identities=10%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ..+++|.|||||||||..+.||+.+ |+..+.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~el-g~~v~E   75 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKEL-GFEVQE   75 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh-CCeeEE
Confidence            4578889999999999999999997 886653

>PRK04328 hypothetical protein; Provisional

Probab=93.94  E-value=0.12  Score=51.72  Aligned_cols=24  Identities=42%  Similarity=0.587  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ....++|.|+||||||++|..++.
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~   45 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLW   45 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999987654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.89  E-value=0.13  Score=51.10  Aligned_cols=121  Identities=13%  Similarity=0.229  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHHhhhhc---cccc-------C----C--cchHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLLRYFAN---IEDD-------G----E--GLNSRIKSS  281 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLlr~~~~---~~~~-------~----t--~~g~~i~~~  281 (520)
                      .-.+..+..|+||.||||||+.+.|.-...   |-..+.-.++-.-...   ++..       +    +  ...+-+.=.
T Consensus        30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp  109 (263)
T COG1127          30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP  109 (263)
T ss_pred             eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence            345678899999999999999998864321   2222222222110000   0000       0    0  011111112


Q ss_pred             hhcCCccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHH----HHHHHHhhcCCCCCEEEecCCh
Q psy11031        282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMS----QLIDFENKYQIHPPMILIDCSK  344 (520)
Q Consensus       282 l~~G~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~----Qae~l~~~~~~p~~VI~Ld~~~  344 (520)
                      +.+-..+|..++.+++...|+   ...-++-+.|-||..+.    ---.|.+++...|.++++|=|.
T Consensus       110 lre~~~lp~~~i~~lv~~KL~---~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt  173 (263)
T COG1127         110 LREHTKLPESLIRELVLMKLE---LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT  173 (263)
T ss_pred             hHhhccCCHHHHHHHHHHHHH---hcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC
Confidence            223335788889999888888   22346778999998743    3345556666667888888654

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=93.87  E-value=0.036  Score=53.93  Aligned_cols=21  Identities=48%  Similarity=0.726  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |+|.|+|||||||..+.+.+.
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~   21 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKD   21 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHh
Confidence            689999999999999999987

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=93.85  E-value=0.055  Score=62.46  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee--hhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS--LGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is--~gdLlr  262 (520)
                      ..|.-|++.||||||||++|+.|+... +...++  ..+++.
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~l~~  525 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPEILS  525 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHhh
Confidence            345669999999999999999999986 666554  445555

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK06921 hypothetical protein; Provisional

Probab=93.80  E-value=0.1  Score=52.77  Aligned_cols=38  Identities=13%  Similarity=0.162  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC-----CCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP-----NWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~-----g~~~is~gdLlr  262 (520)
                      ...++|.|+||+|||+++..|+....     ...+++..+++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~  159 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG  159 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence            35699999999999999999887531     224556656655

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=93.80  E-value=0.037  Score=59.20  Aligned_cols=33  Identities=30%  Similarity=0.554  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ..=|+|-|+||+||||.|+.||+-|     .+.|.+.+
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy-----~~~GkiVK  295 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFY-----ASQGKIVK  295 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHH-----HhcCcEEe
Confidence            3449999999999999999999977     55666665

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=93.79  E-value=0.088  Score=57.04  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...|++.|+||+|||++|++|+..+
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l  218 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLL  218 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999875

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.79  E-value=0.054  Score=47.71  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+++|.+||||||+...|...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999998764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=93.78  E-value=0.044  Score=60.88  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++++++||||+||||+|+.|++.+
T Consensus       103 ~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        103 KQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHH
Confidence            4689999999999999999999854

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.77  E-value=0.12  Score=55.24  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .|.+|+|+|++||||||.+.+|+..+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999998654

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=93.77  E-value=0.16  Score=50.30  Aligned_cols=157  Identities=15%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee---ehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI---SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIVY  298 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i---s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll~  298 (520)
                      .|.+|+|.|..||||+...+.|.+.+ .=.++   +.+.=-.   ++ ....-++.--+.+=..|+.  .-......++.
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~l-DPR~~~v~~~~~pt~---eE-~~~p~lwRfw~~lP~~G~I~if~rSWY~~~l~  104 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWL-DPRGFRVHAFGKPTD---EE-LRRPFLWRFWRALPARGQIGIFDRSWYEDVLV  104 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS--GGGEEEEE-SS--H---HH-HTS-TTHHHHTTS--TT-EEEEES-GGGGGTH
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhC-CCCeeEEEeCCCCCh---hH-cCCCcHHHHHHhCCCCCEEEEEecchhhHHHH
Confidence            46889999999999999999999875 33333   3321111   11 0111111111111112221  11123333334


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhhc----------cCCCCCHHHH--HHHH
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLHK----------GQIDNSVSAF--RRRL  363 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~r----------~R~dD~~e~~--~~Rl  363 (520)
                      .++.  .. +..    ..|.+.++++..||+.+.....+   |||.++.+...+          ++-.-++.-+  .+.+
T Consensus       105 ~rv~--~~-~~~----~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~y  177 (228)
T PF03976_consen  105 ERVE--GF-IDE----AEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSPEDWEQRKHY  177 (228)
T ss_dssp             HHHT--TS-STH----HHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--HHHHHHHCCH
T ss_pred             HHHh--cC-CCH----HHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCHHHHHHHhhH
Confidence            4444  11 100    11455678889999988755543   678888864321          1111133333  3457


Q ss_pred             HHHHHHhHHHHHHhhh-CCCEEEEECCCCH
Q psy11031        364 ELFRERTLPMLRAMDV-ETRLTIVDGDTQL  392 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~  392 (520)
                      ..|.+....+++.=+. ..-+++|+|+...
T Consensus       178 d~y~~a~~~~l~~T~t~~APW~iI~a~dk~  207 (228)
T PF03976_consen  178 DRYQKAYEEMLERTDTPYAPWHIIPADDKR  207 (228)
T ss_dssp             HHHHHHHHHHHHHH-BSSS-EEEEE-SSHH
T ss_pred             HHHHHHHHHHHhccCCCCCCeEEEeCCCHH
Confidence            7888877777764432 3569999999764

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>KOG1969|consensus

Probab=93.76  E-value=0.067  Score=60.30  Aligned_cols=36  Identities=14%  Similarity=0.427  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ..+.-++.+++||||-||||+|.-||+.- |+..+.+
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqa-GYsVvEI  357 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEI  357 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhc-CceEEEe
Confidence            34455788899999999999999999986 9988866

>CHL00176 ftsH cell division protein; Validated

Probab=93.72  E-value=0.062  Score=60.93  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ..|+-|++.||||+|||++|+.|+... +.+.+++
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~i  247 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSI  247 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh-CCCeeec
Confidence            446679999999999999999999986 7666544

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=93.72  E-value=0.055  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|++||||||+++++...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.71  E-value=0.039  Score=54.97  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      -...-++.|+||.||||||+.+.|+    |+..-+.|.+.-
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiA----GL~~p~~G~V~~   62 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIA----GLEKPTSGEVLL   62 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHh----CCCCCCCceEEE
Confidence            3456789999999999999999987    566666666443

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.66  E-value=0.058  Score=48.01  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++.|+|+.||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            45689999999999999999997654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=93.66  E-value=0.069  Score=52.19  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      ...++|.|++|||||++|+.++...    ..+.++++.++..
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~   83 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL   83 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence            4568999999999999999998752    1445566655443

>PRK06893 DNA replication initiation factor; Validated

Probab=93.65  E-value=0.054  Score=53.42  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+.+++.|+||+|||+++..++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~   62 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNH   62 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999865

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=93.64  E-value=0.052  Score=55.37  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|+|+||.||||||.+.+|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998754

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=93.64  E-value=0.054  Score=58.43  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..|.+|+++|++||||||.|.+||..
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~  123 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYY  123 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999854

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK08116 hypothetical protein; Validated

Probab=93.63  E-value=0.14  Score=51.81  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      -++|.|++|+|||.+|..|+..+    ..+.+++..+++.
T Consensus       116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~  155 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN  155 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            48999999999999999998752    1445667777776

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=93.59  E-value=0.068  Score=46.68  Aligned_cols=36  Identities=14%  Similarity=0.246  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ....+.|.|++||||||+++.+. .  |-..+.-.++..
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~-~--G~i~~~g~di~~   49 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI-K--RKHRLVGDDNVE   49 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh-C--CeEEEeeEeHHH
Confidence            35789999999999999999987 2  334444444433

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=93.58  E-value=0.049  Score=51.07  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~  247 (520)
                      ++|.|+||||||++|.+++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~   21 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLY   21 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999988764

A related protein is found in archaea.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=93.58  E-value=0.06  Score=48.49  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+||||++.++...
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=93.56  E-value=0.059  Score=55.57  Aligned_cols=36  Identities=22%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLL  261 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLl  261 (520)
                      +.++|.||||+||||+|+.+++.+.      .+.++++.++.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~   78 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF   78 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence            4589999999999999999988752      13456665554

>cd00876 Ras Ras family

Probab=93.53  E-value=0.052  Score=48.79  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|++||||||+..++...
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=93.49  E-value=0.066  Score=50.94  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++|.|++||||||+.+.|+..+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35689999999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>smart00175 RAB Rab subfamily of small GTPases

Probab=93.46  E-value=0.062  Score=48.67  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.|||||||+++++...
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999754

Rab GTPases are implicated in vesicle trafficking.

>PF13479 AAA_24: AAA domain

Probab=93.45  E-value=0.065  Score=52.23  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG  258 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g  258 (520)
                      .+.+++|.|+||+||||+|..+    ++..+|+++
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E   32 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTE   32 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC----CCeEEEEeC
Confidence            4678999999999999999976    355677764

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=93.45  E-value=0.046  Score=49.32  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      +++.|+||.||||+++.||+.. |...
T Consensus         2 vLleg~PG~GKT~la~~lA~~~-~~~f   27 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSL-GLSF   27 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHT-T--E
T ss_pred             EeeECCCccHHHHHHHHHHHHc-CCce
Confidence            7899999999999999999986 6644

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=93.45  E-value=0.1  Score=49.57  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh-----hCCCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ-----DYPNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~-----k~~g~~~is~gdLlr  262 (520)
                      ...-+++.|+||+|||.+|..|+.     .+ ...++++.+|+.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~~~~L~~   88 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFITASDLLD   88 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEeecCceec
Confidence            346799999999999999998875     23 456778888887

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=93.43  E-value=0.068  Score=53.32  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..|-+++|+|++||||||++..|...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999988887653

This is thought to be an ATPase involved in viral DNA packaging [].

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=93.40  E-value=0.066  Score=48.52  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+||||++.++...
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999999865

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=93.38  E-value=0.089  Score=47.13  Aligned_cols=30  Identities=13%  Similarity=0.240  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      +...+|++.|.-||||||+++.|++.+ |..
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l-g~~   42 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARAL-GID   42 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHT-T--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHc-CCC
Confidence            346789999999999999999999987 764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=93.34  E-value=0.17  Score=49.78  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      +..-.++|.|+||||||++|..++.
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~   47 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVY   47 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHH
Confidence            3467899999999999999999864

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=93.32  E-value=0.067  Score=56.35  Aligned_cols=38  Identities=16%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCC----CeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN----WTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g----~~~is~gdLlr  262 (520)
                      ...-|++.||||||||.+|-.|++.+ |    |.+++-.+++.
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSEiyS   90 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSEIYS   90 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGGG-B
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccceeee
Confidence            35789999999999999999999985 5    67788888877

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=93.31  E-value=0.061  Score=51.76  Aligned_cols=38  Identities=34%  Similarity=0.560  Sum_probs=26.4

Q ss_pred             CCC-eEEEEEcCCCCChhHHHHHHHh----hCCCCeeeehhhHHh
Q psy11031        223 NTP-LVVWVVGGPGSSKSEMCQKVLQ----DYPNWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p-~~I~vlG~PGSGKsT~a~~La~----k~~g~~~is~gdLlr  262 (520)
                      .+| .+|-|.||||||||++..++.+    +| .+..|.- |++.
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~-~~aVI~~-Di~t   52 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEY-KIAVITG-DIYT   52 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhhC-CeEEEec-eeec
Confidence            445 7899999999999999776554    44 5555543 4443

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=93.30  E-value=0.068  Score=56.61  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+|.+|+|+|.+||||||++++|..++
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l   29 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRL   29 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999876

>TIGR00750 lao LAO/AO transport system ATPase

Probab=93.30  E-value=0.07  Score=54.88  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+.+|.|.|+|||||||++..|+..
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~   57 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGME   57 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd00154 Rab Rab family

Probab=93.29  E-value=0.07  Score=47.42  Aligned_cols=22  Identities=14%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+++|+|||||||++..+...
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998654

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=93.28  E-value=0.21  Score=52.88  Aligned_cols=26  Identities=35%  Similarity=0.698  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..++|.|+||+|||++++.+++.
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~   78 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEE   78 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999864

>TIGR00763 lon ATP-dependent protease La

Probab=93.27  E-value=0.074  Score=61.82  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGK  259 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gd  259 (520)
                      ..+.+++.||||+|||++|+.|++.+ +...  ++++.
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l-~~~~~~i~~~~  382 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKAL-NRKFVRFSLGG  382 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-cCCeEEEeCCC
Confidence            45689999999999999999999986 6544  44443

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=93.27  E-value=0.077  Score=61.27  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ..|.-|+|.|||||||||+|+.|+..+ +...+  +..+++.
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~-~~~~i~i~~~~i~~  250 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEA-GAYFISINGPEIMS  250 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEecHHHhc
Confidence            446679999999999999999999986 66554  4444444

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=93.26  E-value=0.079  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      +....+.|.|+||||||++|..++.
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~   34 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAV   34 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998875

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PTZ00202 tuzin; Provisional

Probab=93.26  E-value=0.4  Score=51.94  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      ...|.++.|.|++|+||||+|+.+..+. +..
T Consensus       283 ~~~privvLtG~~G~GKTTLlR~~~~~l-~~~  313 (550)
T PTZ00202        283 TAHPRIVVFTGFRGCGKSSLCRSAVRKE-GMP  313 (550)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhcC-Cce
Confidence            3346699999999999999999999876 543

>PRK13695 putative NTPase; Provisional

Probab=93.23  E-value=0.073  Score=49.87  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|.|++||||||+++.|+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999997654

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=93.22  E-value=0.15  Score=56.02  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...-.++|.|+||+||||+|.+++..
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~  286 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLEN  286 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988763

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd04136 Rap_like Rap-like subfamily

Probab=93.21  E-value=0.074  Score=48.22  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.||+||||++.++...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998854

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=93.16  E-value=0.096  Score=47.07  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|.++.+.|++|+||+.+++.||+.+
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            57789999999999999999999999973

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>cd04113 Rab4 Rab4 subfamily

Probab=93.15  E-value=0.075  Score=48.29  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|++|+||||++.+|...
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=93.15  E-value=0.75  Score=45.11  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC-----CCCeeeehh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY-----PNWTQISLG  258 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~-----~g~~~is~g  258 (520)
                      +...++|.|+||+|||++|..++-..     ....++|+.
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E   51 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE   51 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence            45689999999999999988775431     145566653

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=93.13  E-value=1.2  Score=44.35  Aligned_cols=95  Identities=7%  Similarity=-0.014  Sum_probs=61.1

Q ss_pred             CcEEEeCCCCCHHhHH---HHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh
Q psy11031         58 KAFLISGYPRNMRDVV---EYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ  133 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~---~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~  133 (520)
                      ..+|+||.........   ++......+.++|+|+||.+.+.+|.. |+.   ....+.+.+.+..|..-   ...|+ .
T Consensus        69 ~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~~~~~i~~l~~r~e~p---~~~~~-w  141 (249)
T TIGR03574        69 YSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KIPNEVIKDMYEKFDEP---GTKYS-W  141 (249)
T ss_pred             CeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CCCHHHHHHHHHhhCCC---CCCCC-c
Confidence            4589999765543332   223344567789999999999999984 432   22355666655555432   22332 2


Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHHH
Q psy11031        134 RGMLIAVNGER--NPVEVYADFRTAVLK  159 (520)
Q Consensus       134 ~~~l~~Ida~~--~~eeV~~~i~~~l~~  159 (520)
                      ...+++||++.  +.+++++.|...+..
T Consensus       142 d~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       142 DLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             cCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            22578899876  678999999887754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>KOG1532|consensus

Probab=93.13  E-value=0.08  Score=53.47  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR  262 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr  262 (520)
                      ...+|++|+|+|..||||||.+++|.....    ..-.|.++--++
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~   60 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVR   60 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHh
Confidence            356789999999999999999999866431    123455555555

>PRK08084 DNA replication initiation factor; Provisional

Probab=93.11  E-value=0.082  Score=52.37  Aligned_cols=25  Identities=8%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+++.||+|||||+++..++...
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999888653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.10  E-value=0.08  Score=51.06  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998643

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=93.09  E-value=0.061  Score=49.99  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|.|+|++||||||++.+|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998863

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=93.08  E-value=0.072  Score=49.77  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++|.|+|++||||||++++|...+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999999874

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd01862 Rab7 Rab7 subfamily

Probab=93.07  E-value=0.076  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|++||||||++.++...
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999988754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.07  E-value=0.083  Score=50.14  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+++.|+..
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PLN03025 replication factor C subunit; Provisional

Probab=93.06  E-value=0.075  Score=55.05  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.+++.||||+||||+|..+++.+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            458899999999999999999875

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=93.06  E-value=0.083  Score=61.35  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGK  259 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gd  259 (520)
                      .+.++++++||||+||||+++.|++.+ +...  ++++.
T Consensus       347 ~~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~~~  384 (784)
T PRK10787        347 IKGPILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMALGG  384 (784)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEcCC
Confidence            356789999999999999999999886 7655  44444

>cd01394 radB RadB

Probab=93.06  E-value=0.089  Score=51.01  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+++|.|+|||||||+|..++..
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~   42 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVE   42 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999998854

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK13768 GTPase; Provisional

Probab=93.02  E-value=0.07  Score=53.57  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +..|+|.|++||||||+|..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4679999999999999999888654

>COG4240 Predicted kinase [General function prediction only]

Probab=93.02  E-value=0.11  Score=51.13  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHH----HhhC-CCCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKV----LQDY-PNWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~L----a~k~-~g~~~is~gdLlr  262 (520)
                      ..|.++.|+||-||||||++..|    ++++ .....+|++|++.
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl   92 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL   92 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence            45899999999999999999765    4443 1457789999987

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=93.02  E-value=0.088  Score=50.93  Aligned_cols=28  Identities=21%  Similarity=0.502  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+++|.|.|++||||||+.+++.+.+
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999998874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.01  E-value=0.085  Score=51.12  Aligned_cols=27  Identities=26%  Similarity=0.155  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            456789999999999999999998643

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0735|consensus

Probab=92.98  E-value=0.11  Score=58.43  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=34.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr  262 (520)
                      +.+.-|++.||||||||.+|..++..+ ++..||+.  +||.
T Consensus       699 r~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPElL~  739 (952)
T KOG0735|consen  699 RLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPELLS  739 (952)
T ss_pred             ccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHHHH
Confidence            445669999999999999999999997 99999986  7777

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=92.97  E-value=0.074  Score=56.45  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+++|+||+|+||||.+.+|+..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999875

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=92.95  E-value=0.099  Score=53.65  Aligned_cols=29  Identities=14%  Similarity=0.302  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      ..|..+++.|+||+||||+++.+++.. +.
T Consensus        41 ~~~~~lll~G~~G~GKT~la~~l~~~~-~~   69 (316)
T PHA02544         41 RIPNMLLHSPSPGTGKTTVAKALCNEV-GA   69 (316)
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHh-Cc
Confidence            345667778999999999999999875 53

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=92.92  E-value=0.2  Score=55.14  Aligned_cols=35  Identities=14%  Similarity=0.189  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh----hC-CCCeeeehh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ----DY-PNWTQISLG  258 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~----k~-~g~~~is~g  258 (520)
                      +...++|.|+|||||||+|.+++-    ++ -...+++..
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            467799999999999999998733    21 145566654

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=92.92  E-value=0.087  Score=53.05  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .-+...++.|+||.||||||+.+.|+.-
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3455789999999999999999999874

>PRK08939 primosomal protein DnaI; Reviewed

Probab=92.89  E-value=0.37  Score=49.81  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      .+-++|.|++|+|||.++..|+..+    .....+++.++++
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~  197 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR  197 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence            4569999999999999999998753    1334567777776

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=92.88  E-value=0.071  Score=55.69  Aligned_cols=38  Identities=18%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCC----CeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN----WTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g----~~~is~gdLlr  262 (520)
                      ..+-|++.||||+|||-+|--|++.+ |    |+-+|-++++.
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEiYS  105 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEIYS  105 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccceeee
Confidence            45779999999999999999999986 6    67778778877

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.87  E-value=0.097  Score=57.33  Aligned_cols=28  Identities=14%  Similarity=0.233  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      .|..+++.||||+||||+|+.+++.+ +.
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~   62 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSL-NC   62 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-cc
Confidence            45568999999999999999999986 54

>cd01895 EngA2 EngA2 subfamily

Probab=92.87  E-value=0.09  Score=47.65  Aligned_cols=24  Identities=25%  Similarity=0.602  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.+|+++|.+|+||||+...|...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc
Confidence            568999999999999999999765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.86  E-value=0.09  Score=50.90  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+.+.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998643

>KOG1534|consensus

Probab=92.83  E-value=0.07  Score=51.96  Aligned_cols=46  Identities=11%  Similarity=0.017  Sum_probs=30.1

Q ss_pred             HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        365 LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       365 ~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      .|++..+.+...-++-+.+..+.-+.+-++-.+.|.+.|...++.-
T Consensus       208 Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~  253 (273)
T KOG1534|consen  208 KFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYG  253 (273)
T ss_pred             HHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence            5666666666666665656666666666666777777777766543

>cd00157 Rho Rho (Ras homology) family

Probab=92.83  E-value=0.09  Score=48.05  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+||||||++.+|...
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999865

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=92.82  E-value=0.097  Score=53.62  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ......|.|+|+|||||||+.+.+...+
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999888764

>CHL00206 ycf2 Ycf2; Provisional

Probab=92.81  E-value=0.1  Score=64.69  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=32.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      ...|+=|+++||||+|||.+|+.||... +++.  ++..+++.
T Consensus      1627 l~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1627 LSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhh
Confidence            3557789999999999999999999985 6654  56668875

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.80  E-value=0.088  Score=54.25  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      .|+++||.|||||.+|+-||+.+ +.+.-
T Consensus        99 NILLiGPTGsGKTlLAqTLAk~L-nVPFa  126 (408)
T COG1219          99 NILLIGPTGSGKTLLAQTLAKIL-NVPFA  126 (408)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHh-CCCee
Confidence            49999999999999999999986 76653

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=92.79  E-value=0.096  Score=51.75  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      -...-++.|+||.||||||+...|+-
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999998863

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=92.78  E-value=0.097  Score=50.51  Aligned_cols=27  Identities=15%  Similarity=0.115  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998643

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=92.78  E-value=0.091  Score=47.49  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+++|+|||||||+..++...
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=92.76  E-value=0.097  Score=57.24  Aligned_cols=27  Identities=33%  Similarity=0.717  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.|.++.|+||||+||||+.+.|.++|
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~   93 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRF   93 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence            334455599999999999999999886

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=92.74  E-value=0.097  Score=50.56  Aligned_cols=27  Identities=11%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            446789999999999999999998643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.73  E-value=0.66  Score=52.57  Aligned_cols=29  Identities=14%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      +.+.-++|.|++|+||||+|+.|++.+ ++
T Consensus        36 RLpHA~LFtGP~GvGKTTLAriLAkaL-nC   64 (700)
T PRK12323         36 RLHHAYLFTGTRGVGKTTLSRILAKSL-NC   64 (700)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh-cC
Confidence            345568999999999999999999987 55

>cd03112 CobW_like The function of this protein family is unkown

Probab=92.72  E-value=0.11  Score=48.11  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      |+++|.|..||||||+.+.+.+..
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcc
Confidence            478999999999999999988764

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.72  E-value=0.1  Score=49.90  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999754

>cd01860 Rab5_related Rab5-related subfamily

Probab=92.69  E-value=0.095  Score=47.55  Aligned_cols=23  Identities=13%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|++||||||+++++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=92.68  E-value=0.093  Score=51.50  Aligned_cols=27  Identities=11%  Similarity=0.112  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            345678999999999999999999754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=92.68  E-value=0.12  Score=40.68  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|.|+.||||||+...+.--
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999877543

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=92.67  E-value=0.31  Score=48.99  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr  262 (520)
                      .+.-+++.|+||+|||.+|..|+.+..  |+  ..+++.++++
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~  146 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS  146 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            466799999999999999987766421  33  4567778887

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.66  E-value=0.082  Score=43.14  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|++.|.+|+||||+|..|+..+
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l   23 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAAL   23 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999998865

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=92.64  E-value=0.1  Score=50.08  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+.+.|+..+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            346789999999999999999998643

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=92.63  E-value=0.1  Score=50.24  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999854

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=92.63  E-value=0.09  Score=55.10  Aligned_cols=26  Identities=15%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .-.+++++||+|+||||++++|.+.+
T Consensus        87 ~krIl~L~GPvg~GKSsl~~~Lk~~l  112 (358)
T PF08298_consen   87 RKRILLLLGPVGGGKSSLAELLKRGL  112 (358)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34789999999999999999998754

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.62  E-value=0.1  Score=50.22  Aligned_cols=26  Identities=15%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999854

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.59  E-value=0.099  Score=52.04  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      -.....++|+|++||||||+.+.|+-
T Consensus        27 i~~Ge~~~i~G~nGsGKSTL~~~l~G   52 (235)
T COG1122          27 IEKGERVLLIGPNGSGKSTLLKLLNG   52 (235)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            34567899999999999999999875

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.59  E-value=0.11  Score=50.15  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.58  E-value=0.11  Score=50.81  Aligned_cols=28  Identities=14%  Similarity=0.124  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3456789999999999999999998643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.57  E-value=0.11  Score=50.51  Aligned_cols=26  Identities=12%  Similarity=0.185  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...-++.|+|+.||||||+.+.|+..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44678999999999999999999854

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=92.57  E-value=0.11  Score=50.55  Aligned_cols=28  Identities=25%  Similarity=0.181  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+.+.|+..+
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998643

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=92.56  E-value=0.11  Score=51.19  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=92.53  E-value=0.11  Score=51.14  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            446789999999999999999998643

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.53  E-value=0.11  Score=50.50  Aligned_cols=27  Identities=15%  Similarity=0.252  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999998754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=92.51  E-value=0.11  Score=48.81  Aligned_cols=26  Identities=15%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+|+++|++||||||+.++|...
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~   37 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNG   37 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhc
Confidence            55688999999999999999999754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=92.50  E-value=0.11  Score=48.78  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            345678999999999999999999754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG2004|consensus

Probab=92.48  E-value=0.099  Score=58.87  Aligned_cols=41  Identities=17%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr  262 (520)
                      ....+++++.||||.|||++++.||+.+- .|..+|+|-+-.
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD  476 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD  476 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence            35689999999999999999999999751 467889998876

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=92.47  E-value=0.11  Score=51.25  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+++.|+..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999854

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.45  E-value=0.11  Score=53.93  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      -.|+.|+++||.|.|||.+|++||+-- |.+.+.+
T Consensus        48 V~PKNILMIGpTGVGKTEIARRLAkl~-~aPFiKV   81 (444)
T COG1220          48 VTPKNILMIGPTGVGKTEIARRLAKLA-GAPFIKV   81 (444)
T ss_pred             cCccceEEECCCCCcHHHHHHHHHHHh-CCCeEEE
Confidence            458999999999999999999999875 8887766

>cd04123 Rab21 Rab21 subfamily

Probab=92.45  E-value=0.11  Score=46.78  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|++|+||||++.++...
T Consensus         2 ki~i~G~~~~GKStli~~l~~~   23 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVEN   23 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998864

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=92.44  E-value=0.11  Score=50.09  Aligned_cols=27  Identities=11%  Similarity=0.140  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999854

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.44  E-value=0.11  Score=51.40  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            446789999999999999999998643

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=92.40  E-value=0.11  Score=50.56  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+.+.|+..+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          28 IKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457789999999999999999998543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=92.40  E-value=0.51  Score=54.24  Aligned_cols=29  Identities=14%  Similarity=0.168  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      .+..++|.|++|+||||+++.|++.+ ++.
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaL-nCe   65 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKAL-NCE   65 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-cCc
Confidence            45567899999999999999999987 653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=92.39  E-value=0.12  Score=49.01  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ...-+|.+.||.||||||+.+.++.    +.....|.++.
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~----Lisp~~G~l~f   62 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVAS----LISPTSGTLLF   62 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHh----ccCCCCceEEE
Confidence            4567899999999999999999885    23345556655

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=92.38  E-value=0.11  Score=47.03  Aligned_cols=22  Identities=23%  Similarity=0.518  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+||||||++.++...
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=92.38  E-value=0.11  Score=50.27  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            45678999999999999999999754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.36  E-value=0.11  Score=49.80  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=92.35  E-value=0.12  Score=48.15  Aligned_cols=27  Identities=15%  Similarity=0.166  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=92.35  E-value=0.12  Score=51.07  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+..
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=92.33  E-value=0.11  Score=51.62  Aligned_cols=28  Identities=25%  Similarity=0.208  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|++||||||+++.|+..+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        26 LYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=92.33  E-value=0.54  Score=53.83  Aligned_cols=120  Identities=14%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCC---CCeee--------ehhhHHhhhhcccccCCc-chHHHHhhhhcCCcc
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQI--------SLGKLLRYFANIEDDGEG-LNSRIKSSVSAGDFV  288 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~i--------s~gdLlr~~~~~~~~~t~-~g~~i~~~l~~G~~v  288 (520)
                      .-++..++.|+|+.||||||+++.|+.-|.   |-..+        +..+ +|+.......+.. ....+++-+.-|...
T Consensus       475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~-lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~  553 (686)
T TIGR03797       475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA-VRRQLGVVLQNGRLMSGSIFENIAGGAPL  553 (686)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH-HHhccEEEccCCccCcccHHHHHhcCCCC
Confidence            345678999999999999999999987652   21221        1111 2311111111111 222445555445445


Q ss_pred             chHHHHHHHHH-----HHhccccCCC-cEEEEeC---CCCCHHHHHHHHhhcCCCCCEEEecCC
Q psy11031        289 NRDVVLDIVYA-----EMKKTKYTEA-DGIVIDG---FPREMSQLIDFENKYQIHPPMILIDCS  343 (520)
Q Consensus       289 Pd~lv~~ll~~-----~l~~~~~~~~-~G~ILDG---FPrt~~Qae~l~~~~~~p~~VI~Ld~~  343 (520)
                      +++-+.+.++.     .+.  ....+ ...|-++   +.---.|.-.+-+++...+.+++||=+
T Consensus       554 ~~e~i~~al~~a~l~~~i~--~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp  615 (686)
T TIGR03797       554 TLDEAWEAARMAGLAEDIR--AMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA  615 (686)
T ss_pred             CHHHHHHHHHHcCcHHHHH--hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            66655555542     222  11111 1222222   222245666677777777888888744

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=92.33  E-value=0.12  Score=47.45  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|+||+||||++.++...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            467999999999999999999754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=92.32  E-value=0.12  Score=52.66  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCe-eeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT-QISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~-~is~gdLlr  262 (520)
                      .=-+++.||||-||||+|..+|... |.. ++..|-.+.
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~le   89 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALE   89 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEeccccccc
Confidence            4459999999999999999999987 653 334444443

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=92.31  E-value=0.12  Score=50.61  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44678999999999999999999854

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd01861 Rab6 Rab6 subfamily

Probab=92.30  E-value=0.11  Score=46.93  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+||||||+..++...
T Consensus         2 ki~liG~~~~GKSsli~~l~~~   23 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYD   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999988653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd00879 Sar1 Sar1 subfamily

Probab=92.29  E-value=0.12  Score=48.46  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|++||||||+..++...
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4577899999999999999999753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=92.29  E-value=0.12  Score=50.86  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3456789999999999999999998543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=92.28  E-value=0.12  Score=50.17  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44678999999999999999999854

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04296 thymidine kinase; Provisional

Probab=92.27  E-value=0.099  Score=50.05  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++++.|+|||||||.+..++.++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
Confidence            578999999999999998888764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=92.27  E-value=0.13  Score=48.49  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+++.|+..
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.27  E-value=0.12  Score=50.63  Aligned_cols=28  Identities=14%  Similarity=0.126  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|+..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=92.26  E-value=0.1  Score=50.41  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      . ++.|+|+.||||||+.+.|+..
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCC
Confidence            5 8999999999999999999854

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=92.25  E-value=0.12  Score=50.80  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999854

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=92.24  E-value=0.12  Score=50.48  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+.-
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            345678999999999999999999753

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.23  E-value=0.13  Score=49.39  Aligned_cols=27  Identities=11%  Similarity=0.135  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            445788999999999999999999754

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=92.22  E-value=0.11  Score=49.90  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+|+|+|++||||||++.++.+..
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~   29 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE   29 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc
Confidence            689999999999999999998765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.20  E-value=0.12  Score=49.08  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcC
Confidence            34678999999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd04159 Arl10_like Arl10-like subfamily

Probab=92.19  E-value=0.1  Score=46.42  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |.|+|++||||||+.++|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999764

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=92.17  E-value=0.12  Score=50.64  Aligned_cols=27  Identities=33%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            346789999999999999999998653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=92.17  E-value=0.12  Score=50.80  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+..
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999854

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=92.17  E-value=0.092  Score=48.32  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|.++|++||||||++..++..+
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~   23 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHH
Confidence            37899999999999999998753

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=92.16  E-value=0.12  Score=46.02  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+++|++||||||+...|...
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            36999999999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=92.16  E-value=0.12  Score=47.94  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.||+||||+..++...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998854

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=92.16  E-value=0.13  Score=51.07  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998643

>cd04154 Arl2 Arl2 subfamily

Probab=92.14  E-value=0.13  Score=47.70  Aligned_cols=25  Identities=16%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+++|++||||||+..+|...
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC
Confidence            4567999999999999999998754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=92.14  E-value=0.12  Score=51.85  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      ....|+|.|++||||||+...|.+..+..
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             cceEEEEECCCccccchHHHHHhhhcccc
Confidence            46789999999999999999999876444

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=92.14  E-value=0.12  Score=51.30  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+..
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345678999999999999999999854

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=92.14  E-value=0.13  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      +...++.|.|+||||||++|..++-
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~   41 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAV   41 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999974

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=92.14  E-value=0.13  Score=48.41  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+++.|+..
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=92.13  E-value=0.12  Score=52.11  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      +....++|.|+||||||++|.+++.
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~   58 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAV   58 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999998765

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=92.13  E-value=0.12  Score=50.19  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+..
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44678999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=92.12  E-value=0.12  Score=50.00  Aligned_cols=23  Identities=17%  Similarity=0.118  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ..+++|+||.||||||+++.|+.
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            37899999999999999999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=92.12  E-value=0.11  Score=47.50  Aligned_cols=23  Identities=13%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .|+|+|.+||||||+..+|...+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~   23 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLF   23 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhc
Confidence            38899999999999999998654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=92.12  E-value=0.13  Score=50.42  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...-++.|+|+.||||||+++.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456789999999999999999998653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=92.12  E-value=0.13  Score=50.35  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++.|+|+.||||||+++.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            35789999999999999999998643

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	520
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		1e-11
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		2e-11
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		4e-11
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		2e-10
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		2e-09
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		2e-07
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		3e-07
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		4e-06
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		1e-05
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		3e-04
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		4e-04
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		6e-04
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		6e-04
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		6e-04

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 12/187 (6%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           V++V+GGPG+ K   C+K+++DY ++  +S G LLR  A     G      IK+ +  G 
Sbjct: 17  VIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR--AEQGRAGSQYGELIKNCIKEGQ 73
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346
            V +++ L ++   +           +IDGFPR+M Q I FE        ++  DC + +
Sbjct: 74  IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDI 133
Query: 347 L---------HKGQIDNSVSAXXXXXXXXXXXTLPMLRAMDVETRLTIVDGDTQLPQVRE 397
           +           G+ D+++ +           ++P++   + ++++  V  D  +  V +
Sbjct: 134 MLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYK 193
Query: 398 EFERVLK 404
           + +  ++
Sbjct: 194 DVQDAIR 200

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           +++VVGGPGS K   C+K++Q Y  +T +S G LLR   +    G     ++   +  G 
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLRSEVS---SGSARGKKLSEIMEKGQ 66
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI 340
            V  + VLD++   M   K   + G +IDG+PRE+ Q  +FE +  I  P +L+
Sbjct: 67  LVPLETVLDMLRDAM-VAKVNTSKGFLIDGYPREVQQGEEFERR--IGQPTLLL 117

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           +++VVGGPGS K   C+K++Q Y  +T +S G LLR  A +   G      +   +  G 
Sbjct: 11  IIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR--AEV-SSGSARGKMLSEIMEKGQ 66
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI------ 340
            V  + VLD++   M   K   + G +IDG+PRE+ Q  +FE K  I  P +L+      
Sbjct: 67  LVPLETVLDMLRDAM-VAKVDTSKGFLIDGYPREVKQGEEFERK--IGQPTLLLYVDAGP 123
Query: 341 -DCSKLVLHKGQIDNSV 356
              +K +L +G+    V
Sbjct: 124 ETMTKRLLKRGETSGRV 140

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 208 GVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI 267
           G   E  RK K        +++++GGPGS K   C+K+++ Y  +T +S G+LLR     
Sbjct: 3   GGFMEDLRKCK--------IIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLREELAS 53
Query: 268 EDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDF 327
           E +   L   I+  +  GD V   +VL+++   M  +   +  G +IDG+PRE+ Q  +F
Sbjct: 54  ESERSKL---IRDIMERGDLVPSGIVLELLKEAMVAS-LGDTRGFLIDGYPREVKQGEEF 109
Query: 328 ENKYQIHPPMILIDCS 343
             +      +I +DCS
Sbjct: 110 GRRIGDPQLVICMDCS 125

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           V++V+GGPGS K   C+K++Q + ++  +S G LLR  A ++  G      +K+ +  G+
Sbjct: 31  VIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGDLLR--AEVQ-SGSPKGKELKAMMERGE 86
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI--DCSK 344
            V  +VVL ++   M K         +IDG+PRE+ Q I FE   ++ P + +I  D S+
Sbjct: 87  LVPLEVVLALLKEAMIKLVDKNCH-FLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSE 143
Query: 345 LVLHK 349
            V+ K
Sbjct: 144 EVMRK 148

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
           PLVV+V+GGPG+ K   C ++++ Y  +T +S G+LLR      D   G    I+  +  
Sbjct: 3   PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLRDERKNPDSQYG--ELIEKYIKE 59
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEA--DGIVIDGFPREMSQL 324
           G  V  ++ + ++  EM +T    A  +  +IDGFPR    L
Sbjct: 60  GKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNL 101

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI-EDDGEGLNSRI 278
           +E++ P VV+V+GGPGS K   C  +++D+  W  +S G LLR        DGE + + I
Sbjct: 1   MEKSKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLRQEQQSGSKDGEMIATMI 59
Query: 279 KSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADG--IVIDGFPR 319
           K         N ++V  IV  ++ K       G   ++DGFPR
Sbjct: 60  K---------NGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPR 93

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
           PL V + G P S K   C+ +   Y     IS G LLR  A I    E    R K  +  
Sbjct: 5   PLKVMISGAPASGKGTQCELIKTKY-QLAHISAGDLLR--AEIAAGSEN-GKRAKEFMEK 60
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDC 342
           G  V  ++V+++V   +++    E +G ++DG+PR  SQ +  E   +I P   IL+D 
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQE-NGWLLDGYPRSYSQAMALET-LEIRPDTFILLDV 117

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PGS K   C+ + ++Y     +S G +LR       +G  +    KS + +G+FV 
Sbjct: 10  LIGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLREAIK---NGTKIGLEAKSIIESGNFVG 65
Query: 290 RDVVLDIVYAEMKKTKY---TEADGIVIDGFPREMSQ 323
            ++VL +V     K K+      +G V+DGFPR + Q
Sbjct: 66  DEIVLGLV-----KEKFDLGVCVNGFVLDGFPRTIPQ 97

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR-YFANIEDDGEGLNSRIKSSVSAG 285
            V  +G PG+ K     ++ Q+   + ++S G +LR + A     G  L  R++  +  G
Sbjct: 6   AVIFLGPPGAGKGTQASRLAQEL-GFKKLSTGDILRDHVAR----GTPLGERVRPIMERG 60
Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           D V  D++L+++  E+       A+ ++ DGFPR ++Q
Sbjct: 61  DLVPDDLILELIREEL-------AERVIFDGFPRTLAQ 91

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIK 279
           V R + + V ++G PG+ K     K L +     QIS G+L R   NIE+ G  L    K
Sbjct: 15  VPRGSHMRVLLLGPPGAGKGTQAVK-LAEKLGIPQISTGELFRR--NIEE-GTKLGVEAK 70
Query: 280 SSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
             + AGD V  D+  ++V   +       A+G ++DG+PR + Q
Sbjct: 71  RYLDAGDLVPSDLTNELVDDRLNNPD--AANGFILDGYPRSVEQ 112

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
           + ++G PG+ K    Q +++ Y    QIS G +LR        G  L  + K  + AG  
Sbjct: 3   IILLGAPGAGKGTQAQFIMEKY-GIPQISTGDMLRAAVK---SGSELGKQAKDIMDAGKL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           V  ++V+ +V   + +      +G ++DGFPR + Q
Sbjct: 59  VTDELVIALVKERIAQEDCR--NGFLLDGFPRTIPQ 92

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
           + ++G PG+ K    Q +++ Y    QIS G +LR        G  L  + K  + AG  
Sbjct: 3   IILLGAPGAGKGTQAQFIMEKY-GIPQISTGDMLRAAVK---SGSELGKQAKDIMDAGKL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           V  ++V+ +V   + +      +G ++DGFPR + Q
Sbjct: 59  VTDELVIALVKERIAQEDCR--NGFLLDGFPRTIPQ 92

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PG+ K     K+ +++     ++ G +LR        G  L  ++K+++ AG  V+
Sbjct: 21  LLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLRAMVA---SGSELGKKLKATMDAGKLVS 76
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
            ++VL+++   ++       +G ++DGFPR + Q
Sbjct: 77  DEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQ 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	1e-26
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	8e-06
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	5e-26
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	4e-08
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	1e-25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	2e-05
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	3e-25
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	1e-08
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	4e-25
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	2e-12
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	3e-12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	4e-10
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	1e-09
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	2e-09
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	4e-09
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	4e-09
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	5e-09
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	9e-09
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	8e-08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	8e-08
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	1e-07
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	3e-07
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	4e-07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	4e-07
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	7e-07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	6e-04

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  106 bits (266), Expect = 1e-26
 Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)

Query: 211 SEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD 270
           +       +   +   V++V+GGPG+ K   C+K+++DY ++  +S G LLR  A     
Sbjct: 1   TAATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR--AEQGRA 57

Query: 271 GEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENK 330
           G      IK+ +  G  V +++ L ++   +           +IDGFPR+M Q I FE  
Sbjct: 58  GSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERD 117

Query: 331 YQIHPPMILIDCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVET 381
                 ++  DC + ++ +         G+ D+++ + ++R   F+E ++P++   + ++
Sbjct: 118 IVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKS 177

Query: 382 RLTIVDGDTQLPQVREEFERVLKKII 407
           ++  V  D  +  V ++ +  ++  +
Sbjct: 178 KVVRVRCDRSVEDVYKDVQDAIRDSL 203

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 29/132 (21%)

Query: 48  MLEMKMSPAAKA----FLISGYPRNMRDVVEYSDKIKTINGVILI-----AWRQSLLERQ 98
           +L   +S   KA    FLI G+PR M   + +   I     ++          + LLER 
Sbjct: 83  LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG 142

Query: 99  IDYG---------AKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEV 149
              G          K         R     F +   PV ++F+ +  ++ V  +R+  +V
Sbjct: 143 KTSGRSDDNIESIKK---------RFNT--FKETSMPVIEYFETKSKVVRVRCDRSVEDV 191

Query: 150 YADFRTAVLKIL 161
           Y D + A+   L
Sbjct: 192 YKDVQDAIRDSL 203

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  104 bits (261), Expect = 5e-26
 Identities = 47/196 (23%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV 282
               +++++GGPGS K   C+K+++ Y  +T +S G+LLR    +  + E  +  I+  +
Sbjct: 10  RKCKIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLR--EELASESE-RSKLIRDIM 65

Query: 283 SAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP--MILI 340
             GD V   +VL+++   M      +  G +IDG+PRE+ Q  +F    +I  P  +I +
Sbjct: 66  ERGDLVPSGIVLELLKEAMVA-SLGDTRGFLIDGYPREVKQGEEFGR--RIGDPQLVICM 122

Query: 341 DCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQ 391
           DCS   +             +D++     +RLE +   ++P++   + +T+L  ++ +  
Sbjct: 123 DCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGT 182

Query: 392 LPQVREEFERVLKKII 407
              V  +    +  I 
Sbjct: 183 PEDVFLQLCTAIDSIF 198

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 48  MLEMKMS---PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGA 103
           +L+  M       + FLI GYPR ++   E+  +I     VI +     ++  R +    
Sbjct: 79  LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138

Query: 104 KLGH------VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
                      I       L  +Y+   PV  +++ +  L  +N E  P +V+    TA+
Sbjct: 139 SSLPVDDTTKTI----AKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAI 194

Query: 158 LKIL 161
             I 
Sbjct: 195 DSIF 198

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  102 bits (257), Expect = 1e-25
 Identities = 41/199 (20%), Positives = 90/199 (45%), Gaps = 19/199 (9%)

Query: 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIK 279
           +E++ P VV+V+GGPGS K   C  +++D+  W  +S G LLR     +   +     I 
Sbjct: 1   MEKSKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLR--QEQQSGSK-DGEMIA 56

Query: 280 SSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP--- 336
           + +  G+ V   V + ++   +   +       ++DGFPR       +E   +       
Sbjct: 57  TMIKNGEIVPSIVTVKLLKNAIDANQ---GKNFLVDGFPRNEENNNSWEENMKDFVDTKF 113

Query: 337 MILIDCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVD 387
           ++  DC + V+ +         G+ D+++ + ++R   F  +T  ++   +   ++ I+ 
Sbjct: 114 VLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP 173

Query: 388 GDTQLPQVREEFERVLKKI 406
            +  + +V  + E + K +
Sbjct: 174 ANRDVNEVYNDVENLFKSM 192

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 48  MLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKT---INGVILI-AWRQSLLERQIDYG 102
           +L+  +     K FL+ G+PRN  +   + + +K       V+      + + +R +  G
Sbjct: 73  LLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132

Query: 103 AKLG------HVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156
              G        I    R     F      V D +++   +  +   R+  EVY D    
Sbjct: 133 ESSGRSDDNIESIKK--RFNT--FNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENL 188

Query: 157 VLKI 160
              +
Sbjct: 189 FKSM 192

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  102 bits (256), Expect = 3e-25
 Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 18/195 (9%)

Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
             +++VVGGPGS K   C+K++Q Y  +T +S G LLR  + +         ++   +  
Sbjct: 9   TNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR--SEVSSGSA-RGKKLSEIMEK 64

Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP--MILIDC 342
           G  V  + VLD++   M   K   + G +IDG+PRE+ Q  +FE   +I  P  ++ +D 
Sbjct: 65  GQLVPLETVLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFER--RIGQPTLLLYVDA 121

Query: 343 SKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
               + +         G++D++    ++RLE + + T P++   +    +  V+ +  + 
Sbjct: 122 GPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVD 181

Query: 394 QVREEFERVLKKIID 408
            V  +    L  +++
Sbjct: 182 SVFSQVCTHLDALLN 196

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 14/125 (11%)

Query: 48  MLEMKMS---PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGA 103
           ML   M      +K FLI GYPR ++   E+  +I     ++ + A  +++ +R +  G 
Sbjct: 76  MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE 135

Query: 104 KLGH------VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
             G        I    +  L  +Y+   PV  F+++RG++  VN E +   V++   T +
Sbjct: 136 TSGRVDDNEETI----KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHL 191

Query: 158 LKILN 162
             +LN
Sbjct: 192 DALLN 196

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  101 bits (255), Expect = 4e-25
 Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS 283
            PLVV+V+GGPG+ K   C ++++ Y  +T +S G+LLR     ++        I+  + 
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLR--DERKNPDSQYGELIEKYIK 58

Query: 284 AGDFVNRDVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKYQIHPP---MI 338
            G  V  ++ + ++  EM +T     + +  +IDGFPR    L  +            ++
Sbjct: 59  EGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 118

Query: 339 LIDCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGD 389
             DC+  +  +         G+ D++  +  +R++ + + T P++   +   ++  +D  
Sbjct: 119 FFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS 178

Query: 390 TQLPQVREEFERVLKK 405
             + +V +E  ++  K
Sbjct: 179 KSVDEVFDEVVQIFDK 194

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 18/131 (13%)

Query: 43  VTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT---INGVILI-AWRQSLLERQ 98
           +   +   M  +     FLI G+PRN  ++  ++  +     ++ V+      +  +ER 
Sbjct: 72  LKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC 131

Query: 99  IDYGAKLG------HVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD 152
           ++ G   G        +    R++   + Q+  P+ D +++ G +  ++  ++  EV+ +
Sbjct: 132 LERGKSSGRSDDNRESLEK--RIQT--YLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDE 187

Query: 153 FRTAVLKILNK 163
               V++I +K
Sbjct: 188 ----VVQIFDK 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 1e-12
 Identities = 51/371 (13%), Positives = 103/371 (27%), Gaps = 119/371 (32%)

Query: 143 ERNPVEVYADFRTAVLK-----ILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVH 197
                E+   F   VL+     +++          ++    I   + L    Q       
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----- 126

Query: 198 SPPKHFTRPNGVVSEPYRKIKSV---ERNTPLVVWVVGGPGSSKSEMCQKVLQDY----- 249
               + +R      +PY K++      R    V+ + G  GS K+ +   V   Y     
Sbjct: 127 -AKYNVSRL-----QPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 250 -PN---WTQISLGK------------------------LLRYFANIEDDGEGLNSRIKSS 281
                 W  ++L                             + +NI+     + + ++  
Sbjct: 180 MDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGF---------PREMSQLIDF-ENKY 331
           + +  + N  +VL  V            +    + F          R   Q+ DF     
Sbjct: 238 LKSKPYENCLLVLLNVQ-----------NAKAWNAFNLSCKILLTTRF-KQVTDFLSAAT 285

Query: 332 QIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP------------MLRAMDV 379
             H  +   D   + L     D   S   + L+  R + LP            ++     
Sbjct: 286 TTHISL---DHHSMTLTP---DEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIR 338

Query: 380 ETRLTIVDGDTQLPQVR-EEFERVLKKIIDDLENTARPRDKRNH-TALSLDNDNTVVHDL 437
           +   T          V  ++   +++  ++ LE    P + R     LS+   +      
Sbjct: 339 DGLATW----DNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPS------ 384

Query: 438 EGGAGEPVNIP 448
                   +IP
Sbjct: 385 -------AHIP 388

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 73/550 (13%), Positives = 161/550 (29%), Gaps = 172/550 (31%)

Query: 18  RNPLKMFNLFVSEEV-KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYS 76
               +M   FV E +  ++ FL S   TE     M      + + I    R   D   ++
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT----RMY-IEQRDRLYNDNQVFA 127

Query: 77  D-----------------KIKTINGVIL-------------IAWRQSLLERQIDYGA--- 103
                             +++    V++                    ++ ++D+     
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 104 KLGHVILSLARME-LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA------ 156
            L +       +E L      + P    +  R    + N +     + A+ R        
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN---WTSRS-DHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 157 -----VL------KILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTR 205
                VL      K  N  N+    K L+      V + L     +  +  H      T 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTP 300

Query: 206 PNG------VVSEPYRKI-KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPN-WTQISL 257
                     +    + + + V    P  + ++            + ++D    W     
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-----------ESIRDGLATWD---- 345

Query: 258 GKLLRYFANIEDDGEGLNSRIKSSVSA----------GDFV--NRDV-----VLDIVYAE 300
                 + ++  D   L + I+SS++                          +L +++ +
Sbjct: 346 -----NWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 301 MKKTKYTEADGIV--------IDGFPREM-----SQLIDF----ENKYQIHPPMI----- 338
           +     ++   +V        ++  P+E      S  ++     EN+Y +H  ++     
Sbjct: 399 VI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 339 -----LIDCSKLVL----------HKGQIDNS--VSAFRRR-LEL-FRERTLPMLRAMDV 379
                  D     L          H   I++   ++ FR   L+  F E+ +   R    
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDST 512

Query: 380 ETRLTIVDGDTQLPQVR----------EEFERVLKKIIDDLENTARPRDKRNHTAL---S 426
               +    +T L Q++           ++ER++  I+D L           +T L   +
Sbjct: 513 AWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 427 LDNDNTVVHD 436
           L  ++  + +
Sbjct: 572 LMAEDEAIFE 581

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 21/206 (10%)

Query: 211 SEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD 270
              +     V R + + V ++G PG+ K     K+ +      QIS G+L R   NIE+ 
Sbjct: 6   HHHHHSSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFR--RNIEEG 62

Query: 271 GEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDF 327
            + L    K  + AGD V  D+  ++V   +       A+G ++DG+PR + Q   L + 
Sbjct: 63  TK-LGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA--ANGFILDGYPRSVEQAKALHEM 119

Query: 328 --ENKYQIHPPMILIDCSKLVLHK-----GQIDNSVSAFRRRLELFRERTLPMLRAMDV- 379
                  I   ++    S+ VL +     G+ D++      R++++R+ T P+L   +  
Sbjct: 120 LERRGTDIDA-VLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLL---EYY 175

Query: 380 ETRLTIVDGDTQLPQVREEFERVLKK 405
             +L  VD    + +V     R L K
Sbjct: 176 RDQLKTVDAVGTMDEVFARALRALGK 201

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 64.1 bits (156), Expect = 3e-12
 Identities = 29/188 (15%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG 285
            V+ + G PGS KSE   K+L++      I +  ++R       + +     +  +    
Sbjct: 2   KVILITGMPGSGKSEFA-KLLKER-GAKVIVMSDVVR--KRYSIEAKPGERLMDFAKRLR 57

Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL 345
           +     VV  +   E+  +     D +V DG  R ++++ +F+        ++ +     
Sbjct: 58  EIYGDGVVARLCVEELGTSN---HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPK 113

Query: 346 VLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTI------VDGDTQLPQVREEF 399
           + +K  I+   S   + +     R       + +     I      +  D+   + +   
Sbjct: 114 IRYKRMIERLRSDDSKEISELIRR---DREELKLGIGEVIAMADYIITNDSNYEEFKRRC 170

Query: 400 ERVLKKII 407
           E V  +++
Sbjct: 171 EEVTDRVL 178

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 43/219 (19%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PGS K  +CQ++ Q++     +S G  LR   NI+   E +    K  +     V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNF-GLQHLSSGHFLR--ENIKASTE-VGEMAKQYIEKSLLVPD 88

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH-------PPMILID-- 341
            V+  ++ +E++          ++DGFPR + Q    +   ++        P   L D  
Sbjct: 89  HVITRLMMSELENR---RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRL 145

Query: 342 -----C--SKLVLHKG-------------------QIDNSVSAFRRRLELFRERTLPMLR 375
                   S  V +                     Q D+   A   RL  +++   P++ 
Sbjct: 146 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIE 205

Query: 376 AMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTA 414
                  L    G T+  ++      +    I  +++  
Sbjct: 206 LYKSRGVLHQFSG-TETNKIWPYVYTLFSNKITPIQSKE 243

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 43/215 (20%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PGS K  +  ++   +     +S G LLR   N+    E +    K+ +  G  +  
Sbjct: 13  MGAPGSGKGTVSSRITTHF-ELKHLSSGDLLR--DNMLRGTE-IGVLAKAFIDQGKLIPD 68

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH-------PPMILID-- 341
           DV+  +   E+K          ++DGFPR + Q    +  YQI        P  ++    
Sbjct: 69  DVMTRLALHELKNLT---QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRL 125

Query: 342 -----C--SKLVLHKG-------------------QIDNSVSAFRRRLELFRERTLPMLR 375
                   S  V +                     + D+      +RL+ + ++T P+L 
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185

Query: 376 AMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410
               +  L    G T+  ++       L+  +   
Sbjct: 186 YYQKKGVLETFSG-TETNKIWPYVYAFLQTKVPQR 219

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 26/186 (13%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G PG+ K     ++ Q+   + ++S G +LR   ++      L  R++  +  GD V  D
Sbjct: 11  GPPGAGKGTQASRLAQEL-GFKKLSTGDILR--DHVARGTP-LGERVRPIMERGDLVPDD 66

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDF--ENKYQIHPPMILIDCSKLV 346
           ++L+++  E+ +        ++ DGFPR ++Q   L     E   ++   ++L++  +  
Sbjct: 67  LILELIREELAE-------RVIFDGFPRTLAQAEALDRLLSETGTRLLG-VVLVEVPEEE 118

Query: 347 LHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVRE 397
           L +         G+ D++    RRRLE++RE+T P++   +    L  VDG     +V  
Sbjct: 119 LVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYA 178

Query: 398 EFERVL 403
                L
Sbjct: 179 RIRAAL 184

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 47/219 (21%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G P S K   C+ +   Y     IS G LLR  A I    E    R K  +  G  V  +
Sbjct: 12  GAPASGKGTQCELIKTKY-QLAHISAGDLLR--AEIAAGSE-NGKRAKEFMEKGQLVPDE 67

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ-------------LIDFE---------- 328
           +V+++V   +++    E +G ++DG+PR  SQ              I  +          
Sbjct: 68  IVVNMVKERLRQPDAQE-NGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126

Query: 329 ----------NKYQI--HPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRA 376
                       Y +   PP      S+L       D++    + RLE + +    +L  
Sbjct: 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRF---DDTEEKVKLRLETYYQNIESLL-- 181

Query: 377 MDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTA 414
               E  +  V GD  +  V  + + +L  I++      
Sbjct: 182 -STYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMV 219

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 42/208 (20%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K    +++ ++   +  IS G +LR    ++     L  + K  +  G+ V  
Sbjct: 6   LGPPGAGKGTQAKRLAKEK-GFVHISTGDILR--EAVQKGTP-LGKKAKEYMERGELVPD 61

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDFENKYQIH---------PPMI 338
           D+++ ++     +  + +   ++ DGFPR + Q   L +   K  +          P  +
Sbjct: 62  DLIIALI-----EEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEV 116

Query: 339 LID-------C--SKLVLHK------------GQIDNSVSAFRRRLELFRERTLPMLRAM 377
           +I+          +  V H              + D+     ++RLE++RE+T P++   
Sbjct: 117 VIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYY 176

Query: 378 DVETRLTIVDGDTQLPQVREEFERVLKK 405
             +  L I+D    + +V  +   V+  
Sbjct: 177 KKKGILRIIDASKPVEEVYRQVLEVIGD 204

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 47/236 (19%)

Query: 209 VVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE 268
           +++E  R+   + +     +  +G PGS K      + + +  +  +S G LLR     E
Sbjct: 14  LLNELKRRYACLSKPDGRYI-FLGAPGSGKGTQSLNLKKSH-CYCHLSTGDLLR--EAAE 69

Query: 269 DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LI 325
              E L  +IK+ ++ G  V+  +VL +V  ++K  +     G ++DG+PR + Q   L 
Sbjct: 70  KKTE-LGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC--KKGFILDGYPRNVKQAEDLN 126

Query: 326 DFENKYQIHPPMIL---IDCSKLV-------LHK--GQI--------------------- 352
               K Q     +    +    LV       +HK  G+I                     
Sbjct: 127 KLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL 186

Query: 353 ----DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404
               D++    ++RL +F+  T P++     +  L  +D       + ++  + + 
Sbjct: 187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 65/222 (29%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G P + K    Q +++ Y    QIS G +LR  A ++   E L  + K  + AG  V  +
Sbjct: 7   GAPVAGKGTQAQFIMEKY-GIPQISTGDMLR--AAVKSGSE-LGKQAKDIMDAGKLVTDE 62

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPR---------EMSQLIDFENKYQIHPPMILIDC 342
           +V+ +V   + +      +G ++DGFPR         E    +D+         ++  D 
Sbjct: 63  LVIALVKERIAQEDC--RNGFLLDGFPRTIPQADAMKEAGINVDY---------VLEFDV 111

Query: 343 SKLVL---------HK--GQI-------------------------DNSVSAFRRRLELF 366
              ++         H   G++                         D+     R+RL  +
Sbjct: 112 PDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEY 171

Query: 367 RERTLPML-----RAMDVETRLTIVDGDTQLPQVREEFERVL 403
            + T P++      A    T+   VDG   + +VR + E++L
Sbjct: 172 HQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G PG+ K      + + +    QIS G +LR  A ++     L    K+ +  G  V   
Sbjct: 15  GAPGAGKGTQANFIKEKF-GIPQISTGDMLR--AAVKAGTP-LGVEAKTYMDEGKLVPDS 70

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           +++ +V   +K+     A+G + DGFPR ++Q
Sbjct: 71  LIIGLVKERLKEADC--ANGYLFDGFPRTIAQ 100

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PGS K   C+ + ++Y     +S G +LR    I++  + +    KS + +G+FV  
Sbjct: 11  IGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLR--EAIKNGTK-IGLEAKSIIESGNFVGD 66

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           ++VL +V  +         +G V+DGFPR + Q
Sbjct: 67  EIVLGLVKEKFDLGVC--VNGFVLDGFPRTIPQ 97

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K      + + + +   ++ G +LR  + I    + L    K  +  G  V+ 
Sbjct: 10  IGPPGAGKGTQAPNLQERF-HAAHLATGDMLR--SQIAKGTQ-LGLEAKKIMDQGGLVSD 65

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           D++++++  E+        +G ++DGFPR + Q
Sbjct: 66  DIMVNMIKDELTNNPAC-KNGFILDGFPRTIPQ 97

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K    +++++ Y     IS G + R  A I++  E L  + KS +  G+ V  
Sbjct: 6   MGLPGAGKGTQAEQIIEKY-EIPHISTGDMFR--AAIKNGTE-LGLKAKSFMDQGNLVPD 61

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           +V + IV+  + K       G ++DGFPR ++Q
Sbjct: 62  EVTIGIVHERLSKDDC--QKGFLLDGFPRTVAQ 92

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G  GS K      V   Y +   I  G + R   +I    E L  + K  +  GD V  D
Sbjct: 7   GPNGSGKGTQGNLVKDKY-SLAHIESGGIFR--EHIGGGTE-LGKKAKEFIDRGDLVPDD 62

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           + + +V   ++       DG ++DGFPR   Q
Sbjct: 63  ITIPMVLETLESK---GKDGWLLDGFPRNTVQ 91

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
           G PG+ K     K+ +++     ++ G +LR  A +    E L  ++K+++ AG  V+ +
Sbjct: 23  GPPGAGKGTQAPKLAKNF-CVCHLATGDMLR--AMVASGSE-LGKKLKATMDAGKLVSDE 78

Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           +VL+++   ++       +G ++DGFPR + Q
Sbjct: 79  MVLELIEKNLETPPC--KNGFLLDGFPRTVRQ 108

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
           +G PG+ K    +++++ Y     IS G + R  A ++++   L    KS +  G+ V  
Sbjct: 6   MGLPGAGKGTQGERIVEKY-GIPHISTGDMFR--AAMKEETP-LGLEAKSYIDKGELVPD 61

Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
           +V + IV   + K       G ++DGFPR ++Q
Sbjct: 62  EVTIGIVKERLGKDDC--ERGFLLDGFPRTVAQ 92

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 19/129 (14%)

Query: 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKS 280
           +     ++ + G PG+ K+ M + +  +   +  + +GKL++      +    L++ I  
Sbjct: 7   QPKGINIL-ITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII- 64

Query: 281 SVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI 340
                +  + D +LD +   M           V+D    E+     F         ++++
Sbjct: 65  -----EEKDEDRLLDFMEPIMVS-----RGNHVVDYHSSELFPERWFHM-------VVVL 107

Query: 341 DCSKLVLHK 349
             S  VL +
Sbjct: 108 HTSTEVLFE 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.96
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.96
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.96
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.94
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.94
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.94
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.94
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.94
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.94
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.93
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.92
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.92
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.92
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.92
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.91
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.9
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.9
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.9
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.89
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.81
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.8
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.75
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.73
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.73
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.69
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.68
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.66
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.66
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.64
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.57
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.56
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.55
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.55
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.55
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.53
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.53
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.52
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.51
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.51
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.5
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.5
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.49
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.48
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.48
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.48
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.47
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.47
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.45
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.44
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.43
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.43
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.42
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.41
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.41
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.4
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.37
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.37
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.35
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.32
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.31
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.27
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.27
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.25
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.24
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.24
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.24
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.23
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.23
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.22
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.21
1via_A	175	Shikimate kinase; structural genomics, transferase	99.2
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.19
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.18
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.15
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.14
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.12
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.12
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.09
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.09
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.09
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.08
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.06
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.05
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.04
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.0
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.99
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.95
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.91
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.88
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.88
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.88
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.79
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.76
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.73
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.71
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.66
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.63
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.62
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.61
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.59
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.55
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.53
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.51
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.51
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.45
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.43
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.37
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.33
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.28
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.22
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.16
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.09
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.05
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.05
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.04
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.02
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.98
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.94
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.92
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.92
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.91
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.86
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.83
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.82
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.81
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.81
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.8
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	97.77
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.71
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.66
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.65
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	97.57
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.53
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.45
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	97.44
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	97.43
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	97.42
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.38
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.37
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.35
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.31
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.3
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.24
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.16
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.11
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.08
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.04
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.04
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.03
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.95
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.94
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.93
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	96.93
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.89
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.85
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.84
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.73
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.7
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.67
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.58
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.52
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.5
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.41
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.35
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.31
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.25
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.25
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.23
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.22
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.17
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.14
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.11
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.08
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.06
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.04
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.01
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.99
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.95
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.93
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.91
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.87
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.86
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.86
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.85
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.85
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.83
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.8
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.8
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.8
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.79
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.77
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.75
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.75
3bos_A	242	Putative DNA replication factor; P-loop containing	95.64
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.63
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.57
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.57
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.56
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.56
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.55
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.53
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.52
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.46
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	95.41
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.39
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.36
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.35
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.32
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.3
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.17
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.16
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.15
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.14
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.13
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.13
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.07
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.02
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.01
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.97
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.93
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.92
3co5_A	143	Putative two-component system transcriptional RES	94.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.87
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.83
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.81
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.76
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.75
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.75
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.73
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.72
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.71
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.66
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.65
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.65
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.63
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.63
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.6
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.57
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.52
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.51
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.46
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.42
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.4
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.37
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.26
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.25
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	94.22
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.19
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.14
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.11
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.1
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.09
3pvs_A	447	Replication-associated recombination protein A; ma	94.05
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.04
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.95
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.92
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	93.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.9
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.87
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.84
2r44_A	331	Uncharacterized protein; putative ATPase, structur	93.82
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.81
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.81
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.8
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.78
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.77
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.75
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.73
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	93.72
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.69
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.64
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.61
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.6
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.6
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.6
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	93.58
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	93.56
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.52
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.52
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.5
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.49
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.47
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.45
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.4
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.39
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.37
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.35
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.33
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.33
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.33
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.3
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.29
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.29
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.28
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.28
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.25
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.21
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.2
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.19
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.15
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.14
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.14
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.13
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.11
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.1
2og2_A	359	Putative signal recognition particle receptor; nuc	93.09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.07
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.06
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.06
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.05
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.04
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.04
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.01
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.98
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	92.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.92
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.89
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	92.89
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.88
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	92.87
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.83
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.82
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.82
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.77
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	92.74
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.72
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.72
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.71
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.71
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.68
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.66
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.66
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.65
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.64
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	92.64
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.63
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.61
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.6
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.6
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	92.59
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	92.56
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.56
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	92.56
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.54
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.53
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.52
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.51
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.5
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.49
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	92.48
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	92.48
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.47
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.45
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.45
1g6h_A	257	High-affinity branched-chain amino acid transport	92.43
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.42
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.41
1via_A	175	Shikimate kinase; structural genomics, transferase	92.4
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.39
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	92.38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.38
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.37
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.36
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.35
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.33
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.3
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.3
2qgz_A	308	Helicase loader, putative primosome component; str	92.27
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	92.24
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.24
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.23
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.2
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.2
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.19
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.19
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.16
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.1
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.1
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	92.06
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.05
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	92.04
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.03
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.01
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	91.98
2chq_A	319	Replication factor C small subunit; DNA-binding pr	91.94
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	91.82
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.81
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.8
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	91.8
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.8
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.79
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	91.78
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	91.78
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.77
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	91.75
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.69
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.65
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.61
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.61
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	91.58
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.57
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	91.54
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	91.53
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.5
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.49
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.49
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.44
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	91.42
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.39
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	91.37
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.36
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.36
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	91.33
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	91.3
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.29
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.25
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	91.21
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.16
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	91.15
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	91.15
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.13
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.09
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	91.08
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.06
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.03
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.03
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.99
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	90.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	90.93
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	90.87
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.79
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.76
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	90.75
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	90.74
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.73
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	90.72
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.68
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	90.67
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	90.66
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	90.64
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.63
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.62
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.54
3kta_A	182	Chromosome segregation protein SMC; structural mai	90.53
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.51
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	90.5
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.5
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	90.48
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	90.43
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	90.39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.28
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.27
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.26
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.26
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	90.22

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=6.7e-39  Score=311.63  Aligned_cols=180  Identities=27%  Similarity=0.490  Sum_probs=165.0

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      ...++++|+|+|||||||||||++|+++| |+.|||+|++||   ++++.+|++|..++.++++|++||++++.+++.++
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstGdllR---~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~  100 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGDLLR---AEVQSGSPKGKELKAMMERGELVPLEVVLALLKEA  100 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHHHHHH---HHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHHHHHH---HHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999998 999999999999   88889999999999999999999999999999999


Q ss_pred             HhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHhH
Q psy11031        301 MKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      |.+ ...+.+||||||||||..||+.|++.+..++.||+|+|+++.+     +|    +|.||+++.+++|++.|++++.
T Consensus       101 l~~-~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~  179 (217)
T 3umf_A          101 MIK-LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTK  179 (217)
T ss_dssp             HHH-HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTH
T ss_pred             Hhh-ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            982 3445789999999999999999999998888999999999753     22    6889999999999999999999


Q ss_pred             HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      |+++||++++.++.|||++++++||++|.+.|..
T Consensus       180 pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          180 PVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988763

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=5.4e-37  Score=296.09  Aligned_cols=169  Identities=21%  Similarity=0.456  Sum_probs=154.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|||||||||||++|+++| |++|||+|+|||   ++++.+|++|..++.++.+|++||++++.+++.+++.    
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGdllR---~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~----   73 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGDILR---EAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFP----   73 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCC----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHHHHH---HHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhc----
Confidence            69999999999999999999998 999999999999   8888999999999999999999999999999999887    


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc------------------------cCCC
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK------------------------GQID  353 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r------------------------~R~d  353 (520)
                       ...||||||||||..||+.|+..+    ..++.||+|+|+++.+     +|                        +|.|
T Consensus        74 -~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~D  152 (206)
T 3sr0_A           74 -KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQRED  152 (206)
T ss_dssp             -SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGG
T ss_pred             -cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCC
Confidence             246899999999999999997654    3466799999999753     22                        4789


Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       354 D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      |+++.+++|++.|++++.|+++||++++.++.|||++++++||++|.+.|.
T Consensus       153 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~  203 (206)
T 3sr0_A          153 DKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG  203 (206)
T ss_dssp             GSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=2.5e-34  Score=281.06  Aligned_cols=176  Identities=20%  Similarity=0.354  Sum_probs=145.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ...++-|+|+|||||||||++|+++| |+.|||+|+++|   ++.+.++++|+.+++++.+|+++|++++.+++.++|. 
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gdllR---~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~-   81 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKF-GIPQISTGDMLR---AAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLK-   81 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHH-TCCEECHHHHHH---HHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH-
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHh-CCCeeechHHHH---HhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHh-
Confidence            34678999999999999999999998 999999999999   7778899999999999999999999999999999999 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc-----------------------------
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK-----------------------------  349 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r-----------------------------  349 (520)
                       +.++.+||||||||||..||+.|++....++.||+|+||++.+     +|                             
T Consensus        82 -~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~  160 (230)
T 3gmt_A           82 -EADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEP  160 (230)
T ss_dssp             -SGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred             -CcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCc
Confidence             6778889999999999999999998777788899999999752     11                             


Q ss_pred             --cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhC-----------CCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        350 --GQIDNSVSAFRRRLELFRERTLPMLRAMDVE-----------TRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       350 --~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~-----------~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                        +|.||+++.+++|++.|++++.|+++||++.           +.++.|||++++++|++.|.+.|.+
T Consensus       161 L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          161 LVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence              3889999999999999999999999999873           7899999999999999999988754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.96  E-value=5.1e-30  Score=249.12  Aligned_cols=150  Identities=15%  Similarity=0.251  Sum_probs=128.6

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHh
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDK   78 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~   78 (520)
                      +-++++ |+|+|+++++.+.++          +++|.+|||++++++|.++|.+. .+.+||||||||||..||+.|.+.
T Consensus        51 ~~~g~~-hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~  129 (217)
T 3umf_A           51 QKFHFN-HLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKE  129 (217)
T ss_dssp             HHHCCE-EECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHH
T ss_pred             HHHCCc-eEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHh
Confidence            345788 999999888765544          23556999999999999999763 467899999999999999999988


Q ss_pred             cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHH
Q psy11031         79 IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT  155 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~  155 (520)
                      +..+++||+|+||++++.+|+ .|+..++|.|  ++++++||+.|+++|.||++||++++++++|||++++++||++|.+
T Consensus       130 ~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~  209 (217)
T 3umf_A          130 VCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNH  209 (217)
T ss_dssp             TCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHH
T ss_pred             CCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH
Confidence            999999999999999999999 5776678885  8899999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy11031        156 AVLKI  160 (520)
Q Consensus       156 ~l~~~  160 (520)
                      .|+..
T Consensus       210 ~l~k~  214 (217)
T 3umf_A          210 ELQKF  214 (217)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            99753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.96  E-value=1.9e-28  Score=241.34  Aligned_cols=176  Identities=20%  Similarity=0.385  Sum_probs=159.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..|.+|+|+|+|||||||+|++|+++| |+.|+|+++++|   +....+++.|..+++++.+|..+|++++..++..++.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~  102 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDLLR---EAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLK  102 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHHHH---HHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            467899999999999999999999998 999999999999   7777899999999999999999999999999999998


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc------------------------
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK------------------------  349 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r------------------------  349 (520)
                        ...+.++|||||||++..|++.|++.+    ..++.||+|+||++.+     +|                        
T Consensus       103 --~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~  180 (243)
T 3tlx_A          103 --TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDD  180 (243)
T ss_dssp             --SGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCT
T ss_pred             --cccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccc
Confidence              667789999999999999999987653    4567899999999753     12                        


Q ss_pred             -------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        350 -------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       350 -------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                             +|.||+++.+++|+..|++++.++.+||...+.++.|||+.++++|++.|.+.|.
T Consensus       181 ~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          181 VTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             TTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                   2667899999999999999999999999999999999999999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.96  E-value=1.1e-28  Score=238.07  Aligned_cols=146  Identities=12%  Similarity=0.266  Sum_probs=123.3

Q ss_pred             ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD--   77 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~--   77 (520)
                      +-++++ |+|+|+++|+.+.++          +++|.+|||++++++|.++|.+   ..||||||||||..||+.|..  
T Consensus        22 ~~~g~~-~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~---~~~~ilDGfPRt~~Qa~~l~~~l   97 (206)
T 3sr0_A           22 KEKGFV-HISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEML   97 (206)
T ss_dssp             HHHCCE-EEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS---SSCEEEESCCCSHHHHHHHHHHH
T ss_pred             HHHCCe-EEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc---CCceEecCCchhHHHHHHHHhhH
Confidence            446788 999999988766554          2466699999999999999964   468999999999999977643  


Q ss_pred             --hcCCcCEEEEEEcCHHHHHHHh-hh------Ccc--------------CCccc--hHHHHHHHHHHHhccchHHHHhh
Q psy11031         78 --KIKTINGVILIAWRQSLLERQI-DY------GAK--------------LGHVI--LSLARMELANFYQNVTPVTDFFD  132 (520)
Q Consensus        78 --~~~~pd~VI~L~~pd~~l~~Rl-~r------g~~--------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~  132 (520)
                        .+..+++||+|+||++++.+|+ +|      |..              ..|.|  ++++++||+.|+++|.||++||+
T Consensus        98 ~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~  177 (206)
T 3sr0_A           98 EKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYK  177 (206)
T ss_dssp             HHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3568999999999999999999 33      221              23443  89999999999999999999999


Q ss_pred             hCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        133 QRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       133 ~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ++++++.|||++++++||++|+++|..
T Consensus       178 ~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          178 KKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             TTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            999999999999999999999998853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.94  E-value=1.4e-26  Score=222.39  Aligned_cols=172  Identities=26%  Similarity=0.416  Sum_probs=155.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|++++ |+.++++++++|   +....+++.|..+++++..|..+|++++.+++..++.  ..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~r---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~--~~   75 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDMFR---AAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLG--KD   75 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHHHH---HHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHT--SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cc
Confidence            58999999999999999999998 999999999999   7777889999999999999999999999999999998  56


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hc----------------------------
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HK----------------------------  349 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r----------------------------  349 (520)
                      .++.+|||||||++..|++.|.+.+.    .++.||+|+||++.+     .|                            
T Consensus        76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  155 (216)
T 3dl0_A           76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG  155 (216)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccc
Confidence            67889999999999999998887542    456799999999753     22                            


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        350 ---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       350 ---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                         +|.+|+++.+++|++.|++.+.++.+||...+.++.||+++++++|+++|.+.|.
T Consensus       156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (216)
T 3dl0_A          156 ELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG  213 (216)
T ss_dssp             BEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence               3478999999999999999999999999988889999999999999999998875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.94  E-value=3.8e-26  Score=222.86  Aligned_cols=179  Identities=20%  Similarity=0.376  Sum_probs=155.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ...+.+|+|+|+|||||||+|+.|++++ |+.+++++++++   +....+++.|+.+++++..|..+|++++.+++..++
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~li~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l   88 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLR---AMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNL   88 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHHHH---HHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            3456789999999999999999999998 999999999999   666677889999999999999999999999999999


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc-----------------------
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK-----------------------  349 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r-----------------------  349 (520)
                      .  ...++.|||+||||++..|++.|.+.+    ..++.||+|+|+++.+     .|                       
T Consensus        89 ~--~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~  166 (233)
T 1ak2_A           89 E--TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKD  166 (233)
T ss_dssp             T--SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBC
T ss_pred             h--cccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccc
Confidence            8  555678999999999999999876543    3467899999998753     12                       


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        350 --------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       350 --------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                              .|.+|+.+.+++|+..|++.+.+++++|...+.++.|||++++++|++.|.+.|...
T Consensus       167 ~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          167 DITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             TTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence                    145678899999999999999999999987778999999999999999999888653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=1.9e-26  Score=222.69  Aligned_cols=172  Identities=23%  Similarity=0.442  Sum_probs=149.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ..+|+|+|+|||||||+|+.|++++ |+.|++++++++   +....+++.|..+++++..|+.+|++++.+++..++.  
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~li~---~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~--   78 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLR---EAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFD--   78 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHH--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHHHH---HHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHh--
Confidence            3579999999999999999999998 999999999999   6777888999999999999999999999999999998  


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhh----cCCCCCEEEecCChhhhh-----c--------------------------
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENK----YQIHPPMILIDCSKLVLH-----K--------------------------  349 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~----~~~p~~VI~Ld~~~~~~~-----r--------------------------  349 (520)
                      ...++.|||+||||++..|++.|.+.    ...++.||+|+|+++.+.     |                          
T Consensus        79 ~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~  158 (217)
T 3be4_A           79 LGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVT  158 (217)
T ss_dssp             TTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTT
T ss_pred             ccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccc
Confidence            56678899999999999999988742    235678999999997531     1                          


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHH
Q psy11031        350 -----GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERV  402 (520)
Q Consensus       350 -----~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~  402 (520)
                           +|.+|+.+.+++|+..|++.+.+++++|...+.++.|||++++++|++.|.+.
T Consensus       159 ~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~  216 (217)
T 3be4_A          159 GEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI  216 (217)
T ss_dssp             CCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence                 13457889999999999999999999998777899999999999999999765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.94  E-value=5.1e-27  Score=229.38  Aligned_cols=147  Identities=14%  Similarity=0.197  Sum_probs=110.5

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      ++++ |+++|+++++.+.+|          +.+|.+|||++++++|.++|.+.++.+||||||||||..||+.|.+.+..
T Consensus        32 ~g~~-~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~  110 (230)
T 3gmt_A           32 FGIP-QISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVA  110 (230)
T ss_dssp             HTCC-EECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCC
T ss_pred             hCCC-eeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCC
Confidence            5677 888888887765444          23566999999999999999876788899999999999999888877789


Q ss_pred             cCEEEEEEcCHHHHHHHhh-hCc--cC-------------------------Cccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031         82 INGVILIAWRQSLLERQID-YGA--KL-------------------------GHVI--LSLARMELANFYQNVTPVTDFF  131 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-rg~--~~-------------------------~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y  131 (520)
                      +|+||+|+||++++.+|+. |+.  .+                         .|.|  ++++++||+.|+++|.||++||
T Consensus       111 ~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y  190 (230)
T 3gmt_A          111 IDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY  190 (230)
T ss_dssp             CSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999993 321  11                         2554  8999999999999999999999


Q ss_pred             hhC-----------CcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        132 DQR-----------GMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       132 ~~~-----------~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ++.           |++++|||++++++||++|++++.+
T Consensus       191 ~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          191 GDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             HHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             HhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            973           8999999999999999999988753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.94  E-value=3.6e-26  Score=219.85  Aligned_cols=171  Identities=25%  Similarity=0.446  Sum_probs=151.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|++++ |+.++++++++|   +....+++.|..+++++..|..+|++++.+++..++.  ..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~--~~   75 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLR---AAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIA--QE   75 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHT--SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHH---HHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHh--cc
Confidence            59999999999999999999998 999999999999   6667788999999999999999999999999999998  45


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc-------------------------------c
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK-------------------------------G  350 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r-------------------------------~  350 (520)
                      .+..+||+||||++..|+..|......++.||+|+|+.+.+     .|                               +
T Consensus        76 ~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~  155 (214)
T 1e4v_A           76 DCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTT  155 (214)
T ss_dssp             GGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred             ccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCcccccccccccccc
Confidence            55679999999999999999987655677899999998742     11                               2


Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHhhhC-----CCEEEEECCCCHHHHHHHHHHHH
Q psy11031        351 QIDNSVSAFRRRLELFRERTLPMLRAMDVE-----TRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       351 R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~-----~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      |.+|+.+.+++|++.|++.+.+++++|.+.     +.++.|||++++++|++.|.+.|
T Consensus       156 r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          156 RKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             CTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            667889999999999999999999999864     57899999999999999998765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.94  E-value=5e-26  Score=218.33  Aligned_cols=173  Identities=23%  Similarity=0.411  Sum_probs=155.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|++++ |+.++++++++|   +....+++.|..+++++..|..+|++++.+++..++.  ..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~r---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~--~~   75 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDMFR---AAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLS--KD   75 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT--SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cc
Confidence            68999999999999999999998 999999999999   7777888999999999999999999999999999998  55


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhhh-----c----------------------------
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVLH-----K----------------------------  349 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~~-----r----------------------------  349 (520)
                      .++.+||+||||++..|++.|.+.+.    .++.||+|+||++.+.     |                            
T Consensus        76 ~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  155 (216)
T 3fb4_A           76 DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGG  155 (216)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccC
Confidence            66889999999999999998887542    3567999999987532     2                            


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        350 ---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       350 ---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                         +|.+|+++.+++|+..|++.+.++.+||...+.++.||+++++++|++.|.+.|..
T Consensus       156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          156 ELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             BEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence               24688999999999999999999999999988999999999999999999988753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.93  E-value=1.4e-25  Score=216.38  Aligned_cols=176  Identities=19%  Similarity=0.360  Sum_probs=151.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ++.+|+|+|+|||||||+|+.|++++ |+.+++++++++   +....+++.|..+++++..|..+|++.+..++..++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~~~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~   78 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLR---SQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN   78 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHHHH---HHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHh
Confidence            35789999999999999999999997 999999999999   66677889999999999999999999999999988862


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhh----cCCCCCEEEecCChhhh-----hc-------------------------
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENK----YQIHPPMILIDCSKLVL-----HK-------------------------  349 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~----~~~p~~VI~Ld~~~~~~-----~r-------------------------  349 (520)
                       ...++.|||+||||++..|++.|...    ...++.+|+|+|+.+.+     .|                         
T Consensus        79 -~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~  157 (220)
T 1aky_A           79 -NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV  157 (220)
T ss_dssp             -CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTT
T ss_pred             -ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccc
Confidence             23456799999999999999877653    23466799999998752     11                         


Q ss_pred             ------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        350 ------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       350 ------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                            +|.+|+.+.+++|++.|++.+.+++++|.+.+.++.|||++++++|++.|.+.|.
T Consensus       158 ~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          158 TGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             TCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                  1456788999999999999999999999877789999999999999999988764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.92  E-value=1e-24  Score=211.70  Aligned_cols=170  Identities=21%  Similarity=0.313  Sum_probs=147.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|+|||||||+|+.|++++ |+.++++++++|   +....+++.|+.+++++.+|+.+|++++.+++..++.  ..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~--~~   75 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGIFR---EHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLE--SK   75 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH---HHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH--HH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHHHH---HHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHh--cc
Confidence            69999999999999999999997 999999999999   6666788899999999999999999999999999988  33


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhh----cCCCCCEEEecCChhhhh-----cc---------------------------
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENK----YQIHPPMILIDCSKLVLH-----KG---------------------------  350 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~----~~~p~~VI~Ld~~~~~~~-----r~---------------------------  350 (520)
                      . +.+||+||||++..|++.|.+.    ...++.||+|+|+++.+.     |+                           
T Consensus        76 ~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~  154 (223)
T 2xb4_A           76 G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVC  154 (223)
T ss_dssp             C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTT
T ss_pred             c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccc
Confidence            3 7899999999999999998764    235678999999997531     21                           


Q ss_pred             ------CCCCCHH-HHHHHHHHHHHHhHHHHH---Hhhh-----CCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        351 ------QIDNSVS-AFRRRLELFRERTLPMLR---AMDV-----ETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       351 ------R~dD~~e-~~~~Rl~~f~~~~~~l~~---~y~~-----~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                            |.+|+.+ .+++|+..|++.+.|+.+   +|..     .+.++.|||++++++|++.|.+.|
T Consensus       155 ~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          155 GGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             CCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                  2345577 999999999999999999   9976     567899999999999999998765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.92  E-value=1.5e-24  Score=209.51  Aligned_cols=181  Identities=25%  Similarity=0.453  Sum_probs=154.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+.+|+|+|+|||||||+|+.|++++ |+.|++++++++   .....++..|..+++++.+|+.+|++.+..++..++. 
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~~~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~-   78 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY-QLAHISAGDLLR---AEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLR-   78 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH-CCEECCHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHHHH---HHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHh-
Confidence            45789999999999999999999997 999999999999   6666788899999999999999999999998888887 


Q ss_pred             cccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c---------------------------c
Q psy11031        304 TKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K---------------------------G  350 (520)
Q Consensus       304 ~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r---------------------------~  350 (520)
                       ...+ ..||||||||++.+|++.|.+....++.||+|+|+.+.+.     |                           +
T Consensus        79 -~~~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~  157 (222)
T 1zak_A           79 -QPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQ  157 (222)
T ss_dssp             -SHHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBC
T ss_pred             -hccccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCccccccccccc
Confidence             3333 5689999999999999999876656788999999987531     1                           1


Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11031        351 QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLEN  412 (520)
Q Consensus       351 R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~  412 (520)
                      |.+|..+.+++|+..|+....++.++|..  .++.||++.++++|++.|.+.|...+....+
T Consensus       158 r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~~  217 (222)
T 1zak_A          158 RFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSILEKKNE  217 (222)
T ss_dssp             CTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhcccccc
Confidence            23567888999999999999999999964  4889999999999999999999887765544

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.92  E-value=2e-23  Score=198.27  Aligned_cols=180  Identities=24%  Similarity=0.579  Sum_probs=152.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcc-cccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI-EDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~-~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      +..+.+|+|+|+|||||||+|+.|++++ |+.+++++++++   .. ...++..++.++.++.+|+..|++++..++.+.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~~~---~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~   87 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR---AEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA   87 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHHHH---HHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHHHH---HHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            4557899999999999999999999998 999999999999   44 236788899999999999999998888888777


Q ss_pred             HhccccCCC-cEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHh
Q psy11031        301 MKKTKYTEA-DGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERT  370 (520)
Q Consensus       301 l~~~~~~~~-~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~  370 (520)
                      +.. ....+ .+||+||||++.+++..|+..+..++.+|+|+||.+.+.     |    +|.+++.+.+++|+..|.+..
T Consensus        88 i~~-~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~  166 (203)
T 1ukz_A           88 ISD-NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETS  166 (203)
T ss_dssp             HHH-HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTT
T ss_pred             HHh-hhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhh
Confidence            652 12233 689999999999999999987777778999999997532     1    345678999999999999999


Q ss_pred             HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      .++.++|...+.++.||++.++++|+++|.+.|...
T Consensus       167 ~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          167 MPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            999999987778888999999999999999888653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.92  E-value=6.4e-24  Score=205.93  Aligned_cols=173  Identities=21%  Similarity=0.373  Sum_probs=149.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ++.+|+|+|+|||||||+|+.|++++ |+.+++++++++   .....+++.|..+++++..|..+|++....++.+++. 
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~~~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~-   80 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDLLR---DNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELK-   80 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHHHH---HHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH-
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHHHH---HhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHh-
Confidence            46789999999999999999999998 999999999999   6666788899999999999999999999888888887 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c------c----------------------
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K------G----------------------  350 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r------~----------------------  350 (520)
                       .. .+.+||+||||++..|++.|... ..++.+|+|+|+.+.+.     |      +                      
T Consensus        81 -~~-~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~  157 (227)
T 1zd8_A           81 -NL-TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEP  157 (227)
T ss_dssp             -TC-TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred             -cc-cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCccccccccccc
Confidence             32 46789999999999999888765 44678999999987531     1      1                      


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        351 ---QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       351 ---R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                         |.+++.+.+++|+..|++.+.+++++|+..+.++.|||+ ++++|++.|.+.|..
T Consensus       158 l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~  214 (227)
T 1zd8_A          158 LIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQT  214 (227)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHh
Confidence               345688999999999999999999999877889999999 999999999887754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.91  E-value=1.3e-23  Score=197.56  Aligned_cols=178  Identities=26%  Similarity=0.522  Sum_probs=153.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ++.+|+|+|+|||||||+|+.|++++ |+.+++++++++   .....+++.|..+++++..|+.++.+.+..++...+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~   83 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR---SEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVA   83 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHHHH---HHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence            56799999999999999999999997 999999999999   65667788999999999999999999998888888772


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                       ....+.+||+||||++..|++.|...+..++.+|+|+|+.+.+.     |    .|.+++.+.+.+|+..|.....++.
T Consensus        84 -~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  162 (196)
T 2c95_A           84 -KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVI  162 (196)
T ss_dssp             -HTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHH
T ss_pred             -ccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             23356899999999999999998887777778999999997632     1    2335678899999999999999999


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      ++|...+.++.||++.+++++++.|.+.|...
T Consensus       163 ~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          163 AFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            99987777888999999999999998887653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.90  E-value=2.3e-23  Score=197.97  Aligned_cols=174  Identities=26%  Similarity=0.444  Sum_probs=149.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ...|.+|+|+|+|||||||+|+.|++++ |+.+++++++++   +....++..|..+++++..|+.+|++.+..++..++
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~   92 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFR---RNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRL   92 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHHHH---HHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            4557799999999999999999999997 999999999999   666677889999999999999999999999998888


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~  372 (520)
                      .  ...++.+||+||||++..|++.|...+.    .++.+|+|+|+.+.+     .|+|.+++.+.+++|++.|.....+
T Consensus        93 ~--~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~  170 (201)
T 2cdn_A           93 N--NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAP  170 (201)
T ss_dssp             T--SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTT
T ss_pred             h--cccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHH
Confidence            7  4456778999999999999988765442    356799999999764     2457778899999999999999999


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      +.++|  ...++.||++.++++|+++|...|
T Consensus       171 ~~~~~--~~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          171 LLEYY--RDQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             HHHHT--TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred             HHHHh--cCcEEEEeCCCCHHHHHHHHHHHH
Confidence            99988  346889999999999999998765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.90  E-value=1.1e-22  Score=190.05  Aligned_cols=176  Identities=23%  Similarity=0.538  Sum_probs=151.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..+++|+|+|+|||||||+|+.|++++ |+.+++++++++   .....+++.+..+++++..|...++++...++...+.
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   79 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLR---QEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID   79 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence            346799999999999999999999997 999999999999   6665778899999999999999999999999988887


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHh
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERT  370 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~  370 (520)
                        .. .+.+||+||||++..+++.+...+.   .++.+|+|+||.+.+.     |    .|.+++.+.+.+|+..|.+..
T Consensus        80 --~~-~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~  156 (194)
T 1qf9_A           80 --AN-QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQT  156 (194)
T ss_dssp             --TS-TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTH
T ss_pred             --hc-CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhH
Confidence              32 5678999999999999988876554   4567999999997532     2    355677899999999999999


Q ss_pred             HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .++.++|...+.++.||++.+++++++.|...+..
T Consensus       157 ~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          157 KLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            99999998777788999999999999999887754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.90  E-value=6.1e-23  Score=193.36  Aligned_cols=178  Identities=25%  Similarity=0.505  Sum_probs=150.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+.+|+|+|+|||||||+|+.|++++ |+.+++++++++   .....+++.|..+++++..|..++++.+..++.+.+..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~   86 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLR---EELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVA   86 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHHHH---HHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence            36789999999999999999999997 999999999999   66556788899999999999999999999998888772


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cC------CCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQ------IDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R------~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                       ....+.+||+||||++..|++.|.+.+..++.+|+|+|+.+.+.+   .|      .+++.+.+.+|+..|.....++.
T Consensus        87 -~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  165 (199)
T 2bwj_A           87 -SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVI  165 (199)
T ss_dssp             -HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             223468899999999999999888776667789999999976421   12      22346788999999999999999


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      ++|...+.++.||++.+++++++.|.+.|...
T Consensus       166 ~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          166 AYYETKTQLHKINAEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            99987666788999999999999999888654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.90  E-value=2.6e-22  Score=187.84  Aligned_cols=178  Identities=24%  Similarity=0.545  Sum_probs=146.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      +|.+|+|+|+|||||||+|+.|++++ |+.|++++++++   ... ..++..+..+++++..|..+++++...++..++.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~   77 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLR---DERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMD   77 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHH---HHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHH
Confidence            36789999999999999999999997 999999999998   433 3567789999999999999999888777766654


Q ss_pred             cc--ccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHH
Q psy11031        303 KT--KYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRE  368 (520)
Q Consensus       303 ~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~  368 (520)
                      ..  ....+.+||+||||++..+.+.+...+.   .++.+|+|+||++.+.     |    +|.+++.+.+++|+..|.+
T Consensus        78 ~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~  157 (196)
T 1tev_A           78 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQ  157 (196)
T ss_dssp             HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHH
T ss_pred             hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence            21  1224678999999999998877765443   2456999999997531     2    5677889999999999999


Q ss_pred             HhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        369 RTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       369 ~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ...+++++|...+.++.||++.++++|++.|.+.|..
T Consensus       158 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          158 STKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            9999999998777788999999999999999887754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.89  E-value=2e-22  Score=188.22  Aligned_cols=169  Identities=26%  Similarity=0.501  Sum_probs=143.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+.+|+|+|+|||||||+|+.|++++ |+.+++++++++   .....+++.|..+++++.+|..++++.+.+++...+. 
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~-   77 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL-GFKKLSTGDILR---DHVARGTPLGERVRPIMERGDLVPDDLILELIREELA-   77 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH-TCEEECHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-CCeEecHHHHHH---HHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-
Confidence            35789999999999999999999997 999999999999   6556678889999999999999999988888776655 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHh
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERT  370 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~  370 (520)
                            .+||+||||++..|+..+...+.    .++.+|+|+||.+.+     .|    +|.+++.+.+++|+..|.+..
T Consensus        78 ------~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~  151 (186)
T 3cm0_A           78 ------ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKT  151 (186)
T ss_dssp             ------SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             ------CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHH
Confidence                  25999999999998877664332    256799999998753     22    366788999999999999999


Q ss_pred             HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      .++.++|...+.++.||++.++++|+++|.+.+
T Consensus       152 ~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          152 EPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             HHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            999999987777889999999999999998765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.81  E-value=4.8e-19  Score=173.72  Aligned_cols=173  Identities=20%  Similarity=0.348  Sum_probs=143.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      +|.+|+|+|++||||||+++.|++++ |+.+++.|++++   .....++..+..+..++..+..+|+..+.+.+...+. 
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l-g~~~~~~G~i~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~-  100 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF-GLQHLSSGHFLR---ENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELE-  100 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH-CCCCEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-CCeEecHHHHHH---HHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Confidence            57899999999999999999999998 999999999998   4444455678888888888999999998888887776 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c------c----------------------
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K------G----------------------  350 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r------~----------------------  350 (520)
                       .. .+.+||+||||++..+++.+... ..++.+|+|+|+.+.+.     +      +                      
T Consensus       101 -~~-~~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP  177 (246)
T 2bbw_A          101 -NR-RGQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP  177 (246)
T ss_dssp             -TC-TTSCEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCB
T ss_pred             -hc-CCCeEEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccc
Confidence             22 45789999999998888877653 34668999999886421     1      1                      


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        351 ---QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       351 ---R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                         +.+++.+.+.+++..|.+...+++++|.+.+.++.|||+.+ ++|++.|.+.|.+
T Consensus       178 ~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~  234 (246)
T 2bbw_A          178 LVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSN  234 (246)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHT
T ss_pred             cccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHh
Confidence               12357788999999999999999999998888999999998 9999999887764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.80  E-value=7.7e-19  Score=172.68  Aligned_cols=134  Identities=14%  Similarity=0.303  Sum_probs=112.6

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh----cCCcCEEEEEEcCHHHHH
Q psy11031         21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK----IKTINGVILIAWRQSLLE   96 (520)
Q Consensus        21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~----~~~pd~VI~L~~pd~~l~   96 (520)
                      |..++.++.+|.    ++||+++..++.+++...++.+|||||||||+..|+..|.+.    +..||.||+|+||.+++.
T Consensus        75 g~~i~~~~~~g~----~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~  150 (243)
T 3tlx_A           75 GLKIKNIINEGK----LVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLV  150 (243)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred             HHHHHHHHhcCC----CCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHH
Confidence            333444555555    999999999999999876678999999999999999776542    357999999999999999


Q ss_pred             HHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031         97 RQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP  146 (520)
Q Consensus        97 ~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~  146 (520)
                      +|+. |+.                           ...|.|  ++.+++||..|++++.|+++||++.++++.|||++++
T Consensus       151 ~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~  230 (243)
T 3tlx_A          151 NRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPA  230 (243)
T ss_dssp             HHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCH
T ss_pred             HHHHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCH
Confidence            9994 431                           112443  7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11031        147 VEVYADFRTAVL  158 (520)
Q Consensus       147 eeV~~~i~~~l~  158 (520)
                      ++|+++|.++|.
T Consensus       231 ~~v~~~i~~~l~  242 (243)
T 3tlx_A          231 NDLEKKISQHID  242 (243)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999998875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.75  E-value=1.4e-17  Score=159.50  Aligned_cols=147  Identities=22%  Similarity=0.388  Sum_probs=121.8

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---   78 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---   78 (520)
                      ++++ |+++|+.++..+..|          ...|.++|++++.+++.+++....+..||||||||++..|+..+...   
T Consensus        24 ~~~~-~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~  102 (216)
T 3dl0_A           24 YGIP-HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE  102 (216)
T ss_dssp             SSCC-EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             hCCc-EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHH
Confidence            4566 788877777655544          13556999999999999999865678899999999999999776653   


Q ss_pred             -cCCcCEEEEEEcCHHHHHHHhh-h---------------------------CccCCcc--chHHHHHHHHHHHhccchH
Q psy11031         79 -IKTINGVILIAWRQSLLERQID-Y---------------------------GAKLGHV--ILSLARMELANFYQNVTPV  127 (520)
Q Consensus        79 -~~~pd~VI~L~~pd~~l~~Rl~-r---------------------------g~~~~r~--d~e~i~~Rl~~Y~~~t~pv  127 (520)
                       +..+|.||+|+||.+++.+|+. |                           +...+|.  +++.+++|+..|++++.++
T Consensus       103 ~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~  182 (216)
T 3dl0_A          103 MGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPL  182 (216)
T ss_dssp             TTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence             3469999999999999999994 4                           1112343  3789999999999999999


Q ss_pred             HHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        128 TDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       128 i~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      .+||.+.+.++.|||++++++|+++|.++|+.
T Consensus       183 ~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          183 LDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             HHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.73  E-value=5.9e-17  Score=154.97  Aligned_cols=146  Identities=18%  Similarity=0.334  Sum_probs=118.6

Q ss_pred             cCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh----
Q psy11031         13 DFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK----   78 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~----   78 (520)
                      +++ |+++++.++..+..|.          ..|.++|++++.+++.+++....+..||||||||++..|+..+...    
T Consensus        25 ~~~-~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~  103 (216)
T 3fb4_A           25 EIP-HISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDL  103 (216)
T ss_dssp             CCC-EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHT
T ss_pred             CCc-EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence            455 6766666665443331          1344999999999999999865668899999999999999776653    


Q ss_pred             cCCcCEEEEEEcCHHHHHHHhh-h---------------------------CccCCccc--hHHHHHHHHHHHhccchHH
Q psy11031         79 IKTINGVILIAWRQSLLERQID-Y---------------------------GAKLGHVI--LSLARMELANFYQNVTPVT  128 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~Rl~-r---------------------------g~~~~r~d--~e~i~~Rl~~Y~~~t~pvi  128 (520)
                      +..+|.||+|+||.+++.+|+. |                           +...+|.+  ++.+++|+..|++++.++.
T Consensus       104 ~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~  183 (216)
T 3fb4_A          104 GKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLL  183 (216)
T ss_dssp             TCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHH
Confidence            3469999999999999999994 4                           11123433  7889999999999999999


Q ss_pred             HHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        129 DFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       129 ~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      +||.+.+.++.||+++++++|+++|.++|..
T Consensus       184 ~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          184 DFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             HHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.73  E-value=5.6e-17  Score=156.15  Aligned_cols=141  Identities=16%  Similarity=0.313  Sum_probs=114.3

Q ss_pred             ccCcccCcHHHHHH--------------HHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH
Q psy11031         12 LDFPSHRNPLKMFN--------------LFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD   77 (520)
Q Consensus        12 ~~~~~h~s~G~~l~--------------~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~   77 (520)
                      ++++ |+++++.++              +++.+|.    ++|++++.+++..+|....+..|||+|||||+..|+..+..
T Consensus        29 l~~~-~i~~d~li~~~~~~~t~~g~~i~~~~~~g~----~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~  103 (217)
T 3be4_A           29 YGLA-HLSTGDMLREAIKNGTKIGLEAKSIIESGN----FVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAK  103 (217)
T ss_dssp             HCCE-EEEHHHHHHHHHHTC--CCHHHHHHHHHTC----CCCHHHHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHH
T ss_pred             hCce-EEehhHHHHHHHHcCCHHHHHHHHHHHCCC----cCCHHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHH
Confidence            4555 777665554              4455555    99999999999999976567889999999999999966552


Q ss_pred             ----hcCCcCEEEEEEcCHHHHHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhc
Q psy11031         78 ----KIKTINGVILIAWRQSLLERQID-YGA---------------------------KLGHVI--LSLARMELANFYQN  123 (520)
Q Consensus        78 ----~~~~pd~VI~L~~pd~~l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~  123 (520)
                          .+..||.||+|+||.+++.+|+. |+.                           ...|.+  .+.+++|+..|+++
T Consensus       104 ~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~  183 (217)
T 3be4_A          104 ILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQ  183 (217)
T ss_dssp             HHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHH
Confidence                34689999999999999999994 321                           112332  67889999999999


Q ss_pred             cchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031        124 VTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       124 t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +.|+++||++.+.++.|||++++++|+++|.+.|
T Consensus       184 ~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          184 TAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             TTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence            9999999998888999999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.69  E-value=3.4e-16  Score=152.25  Aligned_cols=136  Identities=22%  Similarity=0.397  Sum_probs=110.6

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHHH
Q psy11031         21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLLE   96 (520)
Q Consensus        21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l~   96 (520)
                      |..++.++.+|.    ++||+++.+++..++....+..|||+|||||+..|+..|.+    .+..+++||+|+||.+++.
T Consensus        62 g~~i~~~~~~g~----~~~~~~~~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~  137 (233)
T 1ak2_A           62 GKKLKATMDAGK----LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI  137 (233)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHH
T ss_pred             HHHHHHHHHCCC----cCCHHHHHHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHH
Confidence            333444555555    99999999999999976556789999999999999965533    2347999999999999999


Q ss_pred             HHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031         97 RQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP  146 (520)
Q Consensus        97 ~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~  146 (520)
                      +|+. |+.                           ...|.+  .+.+++|+..|++++.|++++|.+.+.++.|||++++
T Consensus       138 ~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~  217 (233)
T 1ak2_A          138 RRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTP  217 (233)
T ss_dssp             HHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCH
T ss_pred             HHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCH
Confidence            9984 321                           012332  6788999999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy11031        147 VEVYADFRTAVLKI  160 (520)
Q Consensus       147 eeV~~~i~~~l~~~  160 (520)
                      ++|+++|.+.|...
T Consensus       218 ~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          218 DVVFASILAAFSKA  231 (233)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.69  E-value=7.2e-16  Score=140.63  Aligned_cols=165  Identities=19%  Similarity=0.276  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccccc----CCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD----GEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~----~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ++|+|+|+|||||||+|+.| +++ |+.+++++++++   +....    ....+..+..+...   .+++.+.+++...+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l   73 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVR---KRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEEL   73 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHH---HHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHH---HHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHH
Confidence            57999999999999999999 887 999999999999   43221    12233344443332   23355666666666


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCCC--CCHHHHHHHHHHHHHHhHHHH
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQID--NSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~d--D~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      .  . ..+.+||+||| ++..+++.|.+.+..+..+|+|+||.+.+.     |+|.+  .+.+.+.+|+.....  .+..
T Consensus        74 ~--~-~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~--~~~~  147 (179)
T 3lw7_A           74 G--T-SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELK--LGIG  147 (179)
T ss_dssp             C--S-CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHH--HTHH
T ss_pred             H--h-cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhc--cChH
Confidence            4  2 35788999999 999999999998877778999999998642     33332  466777777643222  2233


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      .++...+  ++||++.+++++.++|...+...
T Consensus       148 ~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          148 EVIAMAD--YIITNDSNYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             HHHHTCS--EEEECCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence            3443333  46888889999999999888764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.68  E-value=2.9e-16  Score=150.56  Aligned_cols=145  Identities=15%  Similarity=0.238  Sum_probs=118.6

Q ss_pred             ccCcccCcHHHHHHHHHHccCC----------CCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEVK----------DFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~~----------~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      ++++ |+++|+.+++.+..|..          +|.++|++++.+++..+|....+..|||+|||||+..|+..|...+..
T Consensus        24 ~g~~-~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~~~~  102 (214)
T 1e4v_A           24 YGIP-QISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN  102 (214)
T ss_dssp             HCCC-EEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCC
T ss_pred             hCCe-EEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHhcCCC
Confidence            4566 88888888775544321          245999999999999999764456799999999999999777766678


Q ss_pred             cCEEEEEEcCHHHHHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031         82 INGVILIAWRQSLLERQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFF  131 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y  131 (520)
                      ||.||+|+||.+++.+|+. |+.                           ...|.+  .+.+++|+..|++++.|+++||
T Consensus       103 ~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~  182 (214)
T 1e4v_A          103 VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY  182 (214)
T ss_dssp             CSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999983 321                           012443  6789999999999999999999


Q ss_pred             hhC-----CcEEEEeCCCChHHHHHHHHHHH
Q psy11031        132 DQR-----GMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       132 ~~~-----~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      .+.     +.++.|||++++++|+++|.+.|
T Consensus       183 ~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          183 SKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             HHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            875     57999999999999999998876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.66  E-value=1.2e-15  Score=147.54  Aligned_cols=133  Identities=14%  Similarity=0.192  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLL   95 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l   95 (520)
                      .|..+++++.+|.    ++|++++.+++..+|.... ..+||+|||||+..|+..+.+    .+..||.||+|+||.+++
T Consensus        45 ~g~~i~~~~~~g~----~~~~~~~~~~i~~~l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~  119 (223)
T 2xb4_A           45 LGKKAKEFIDRGD----LVPDDITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVA  119 (223)
T ss_dssp             HHHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             HHHHHHHHHHcCC----cCcHHHHHHHHHHHHhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence            4555555565555    9999999999999987533 679999999999999966643    245899999999999999


Q ss_pred             HHHh-hhCc--c-C--------------------------Cccc--hH-HHHHHHHHHHhccchHHH---Hhhh-----C
Q psy11031         96 ERQI-DYGA--K-L--------------------------GHVI--LS-LARMELANFYQNVTPVTD---FFDQ-----R  134 (520)
Q Consensus        96 ~~Rl-~rg~--~-~--------------------------~r~d--~e-~i~~Rl~~Y~~~t~pvi~---~Y~~-----~  134 (520)
                      .+|+ .|+.  . +                          .|.|  .+ .+++||..|++++.||++   +|.+     .
T Consensus       120 ~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~  199 (223)
T 2xb4_A          120 KNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEG  199 (223)
T ss_dssp             HHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHT
T ss_pred             HHHHHcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccC
Confidence            9999 4431  1 1                          1222  56 899999999999999999   9987     6


Q ss_pred             CcEEEEeCCCChHHHHHHHHHHH
Q psy11031        135 GMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       135 ~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +.++.|||++++++|+++|.+.|
T Consensus       200 ~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          200 FVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             CEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHh
Confidence            78999999999999999998876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.66  E-value=1.2e-15  Score=146.74  Aligned_cols=135  Identities=16%  Similarity=0.279  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh-cCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK-MSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSL   94 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~-~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~   94 (520)
                      .|..+++++.+|.    ++|++++..++.+++. ...+..|||+|||||+..|+..+..    .+..||.||+|+||.++
T Consensus        49 ~g~~i~~~~~~g~----~~~~~~~~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~  124 (220)
T 1aky_A           49 LGLEAKKIMDQGG----LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL  124 (220)
T ss_dssp             HHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred             HHHHHHHHHHCCC----cCCHHHHHHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            3444555566666    9999999999999987 3335679999999999999865432    34689999999999999


Q ss_pred             HHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCC
Q psy11031         95 LERQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGER  144 (520)
Q Consensus        95 l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~  144 (520)
                      +.+|+. |+.                           ...|.+  .+.+++|+..|++.+.|++++|++.+.++.|||++
T Consensus       125 ~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~  204 (220)
T 1aky_A          125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQ  204 (220)
T ss_dssp             HHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTS
T ss_pred             HHHHHhCCCccCccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            999984 321                           012433  67889999999999999999998878899999999


Q ss_pred             ChHHHHHHHHHHHH
Q psy11031        145 NPVEVYADFRTAVL  158 (520)
Q Consensus       145 ~~eeV~~~i~~~l~  158 (520)
                      ++++|+++|.+.|.
T Consensus       205 ~~~~v~~~i~~~l~  218 (220)
T 1aky_A          205 PPATVWADILNKLG  218 (220)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.64  E-value=6e-15  Score=139.18  Aligned_cols=170  Identities=11%  Similarity=0.217  Sum_probs=110.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH--HH-
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY--AE-  300 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~--~~-  300 (520)
                      ++.+|+|+|+|||||||+|+.|++++.|+.++++..        ...++..|+.+++++..+..+..... .++.  .+ 
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~--------~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~   73 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF--------PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRW   73 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES--------SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec--------CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHH
Confidence            467899999999999999999999863577777522        22245678889988876654443322 2221  11 


Q ss_pred             -----HhccccCCCcEEEEeCCCCC-----------HHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHH--HHHHH
Q psy11031        301 -----MKKTKYTEADGIVIDGFPRE-----------MSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVS--AFRRR  362 (520)
Q Consensus       301 -----l~~~~~~~~~G~ILDGFPrt-----------~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e--~~~~R  362 (520)
                           +.. ....+..+|+|+||.+           .++...+......++.+|+|+||++.+.++|.+|..+  .+.+|
T Consensus        74 ~~~~~i~~-~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~r  152 (204)
T 2v54_A           74 EFASFIQE-QLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQK  152 (204)
T ss_dssp             TTHHHHHH-HHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHH
T ss_pred             HHHHHHHH-HHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHH
Confidence                 110 1123567999999865           2333444433345778999999998654455444333  45555


Q ss_pred             HHH-HHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        363 LEL-FRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       363 l~~-f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      +.. |.+..    +.|  ...+++||++.++++|++.|.+.|...+..
T Consensus       153 l~~~y~~~~----~~~--~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~  194 (204)
T 2v54_A          153 VLQEYKKMI----EEG--DIHWQIISSEFEEDVKKELIKNIVIEAIHT  194 (204)
T ss_dssp             HHHHHHHHH----TTC--SSCEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HhC--CCcEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            544 33221    122  245789999999999999999998876653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.57  E-value=2.8e-14  Score=139.13  Aligned_cols=172  Identities=16%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH-HHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV-LDIVYAEM  301 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv-~~ll~~~l  301 (520)
                      ..+.+|+|+|+|||||||||++|++.+ +. ++   +++.   ...+.+++.|+.+++++.+|....+... .-....+.
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l-~~-~~---~~~~---~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~   95 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRL-VK-DY---DVIM---TREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR   95 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH-TT-TS---CEEE---ECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH-hc-CC---Ccee---ecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999987 53 22   2223   3345678899999999998875333322 22222333


Q ss_pred             hcc------ccCCCcEEEEe----------CCCCCHHHHH--H---HHhhcCCCCCEEEecCChhhhh-----ccCC---
Q psy11031        302 KKT------KYTEADGIVID----------GFPREMSQLI--D---FENKYQIHPPMILIDCSKLVLH-----KGQI---  352 (520)
Q Consensus       302 ~~~------~~~~~~G~ILD----------GFPrt~~Qae--~---l~~~~~~p~~VI~Ld~~~~~~~-----r~R~---  352 (520)
                      ...      ....++.+|+|          ||||++.++.  .   +......|+.+|+|+|+++.+.     |++.   
T Consensus        96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr  175 (229)
T 4eaq_A           96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR  175 (229)
T ss_dssp             HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred             HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence            200      01245689999          9998876543  3   3333456788999999997642     2222   


Q ss_pred             -CCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        353 -DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       353 -dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                       ++....+.+|+..++..   +.+.|  .+.+++||+++++++|+++|.+.|...+
T Consensus       176 ~e~~~~~~~~rv~~~y~~---l~~~~--~~~~~vIDa~~s~eev~~~I~~~l~~~l  226 (229)
T 4eaq_A          176 LDQEDLKFHEKVIEGYQE---IIHNE--SQRFKSVNADQPLENVVEDTYQTIIKYL  226 (229)
T ss_dssp             CCHHHHHHHHHHHHHHHH---HTTTC--TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHH---HHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence             22233455555443322   22233  2468899999999999999999888765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.56  E-value=2.6e-14  Score=137.55  Aligned_cols=137  Identities=18%  Similarity=0.308  Sum_probs=109.9

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCC-CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh
Q psy11031         21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPA-AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI   99 (520)
Q Consensus        21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~-~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl   99 (520)
                      |..+++++.+|.    ++|++++..++.+++....+ ..|||||||||+.+|+..+...+..|++||+|++|.+++.+|+
T Consensus        51 g~~i~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~  126 (222)
T 1zak_A           51 GKRAKEFMEKGQ----LVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV  126 (222)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHHHHHHSHHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHH
T ss_pred             hHHHHHHHHcCC----cCCHHHHHHHHHHHHhhccccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence            344444555555    99999999999888864322 5799999999999999777666668999999999999999998


Q ss_pred             h-hCc-----------------------cCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031        100 D-YGA-----------------------KLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF  153 (520)
Q Consensus       100 ~-rg~-----------------------~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i  153 (520)
                      . |+.                       ...|.  ..+.+++|+..|++++.++.++|...  ++.||+++++++|+++|
T Consensus       127 ~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~--~~~Id~~~~~~ev~~~I  204 (222)
T 1zak_A          127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENI--IVKVQGDATVDAVFAKI  204 (222)
T ss_dssp             TTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCC--EEEEECSSCHHHHHHHH
T ss_pred             HcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--EEEEECCCCHHHHHHHH
Confidence            4 321                       11122  26789999999999999999999764  88999999999999999


Q ss_pred             HHHHHHHhcc
Q psy11031        154 RTAVLKILNK  163 (520)
Q Consensus       154 ~~~l~~~~~~  163 (520)
                      .+.+...+.+
T Consensus       205 ~~~l~~~l~~  214 (222)
T 1zak_A          205 DELLGSILEK  214 (222)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhccc
Confidence            9999877643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.55  E-value=1.1e-13  Score=130.93  Aligned_cols=134  Identities=16%  Similarity=0.389  Sum_probs=109.0

Q ss_pred             HHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-
Q psy11031         23 MFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-   99 (520)
Q Consensus        23 ~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-   99 (520)
                      .++.++.+|.    ++|++++..++.+.+...  .+..+||+|||||+.+++..|......++.+|+|+||.+++.+|+ 
T Consensus        64 ~i~~~~~~g~----~~~~~~~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~  139 (203)
T 1ukz_A           64 LIKNCIKEGQ----IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLL  139 (203)
T ss_dssp             HHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHcCC----cCCHHHHHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            3344444444    999999999888877532  233689999999999999777666667999999999999999998 


Q ss_pred             hhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031        100 DYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI  160 (520)
Q Consensus       100 ~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~  160 (520)
                      .|+...+|.  +.+.+.+|+..|.+...|+.++|+..+.++.||+++++++|+++|.+.+...
T Consensus       140 ~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             hccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            454333454  3778899999999999999999988888899999999999999999998754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.55  E-value=8.9e-14  Score=134.34  Aligned_cols=146  Identities=13%  Similarity=0.293  Sum_probs=113.2

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      ++++ |+++|+.++..+..|          ..+|..+|++++..++.+++... ...+||+||||++..|+..+ .....
T Consensus        31 l~~~-~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~vid~~~~~~~~~~~l-~~~~~  107 (227)
T 1zd8_A           31 FELK-HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-TQYSWLLDGFPRTLPQAEAL-DRAYQ  107 (227)
T ss_dssp             SSSE-EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-TTSCEEEESCCCSHHHHHHH-HTTSC
T ss_pred             cCCe-EEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-cCCCEEEeCCCCCHHHHHHH-HHhcC
Confidence            3455 666655555433221          11344999999999998888753 56789999999999998544 44467


Q ss_pred             cCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCcc--chHHHHHHHHHHHhccchHHHHh
Q psy11031         82 INGVILIAWRQSLLERQID-Y------GAK---------------------LGHV--ILSLARMELANFYQNVTPVTDFF  131 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y  131 (520)
                      ++.||+|+||.+++.+|+. |      |..                     ..|.  ..+.+++|+..|++.+.|+++||
T Consensus       108 ~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y  187 (227)
T 1zd8_A          108 IDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYY  187 (227)
T ss_dssp             CCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999983 3      210                     0133  26789999999999999999999


Q ss_pred             hhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        132 DQRGMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       132 ~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      ++.+.++.|||+ ++++|+++|.+++...+
T Consensus       188 ~~~~~~~~id~~-~~~~v~~~i~~~l~~~~  216 (227)
T 1zd8_A          188 QKKGVLETFSGT-ETNKIWPYVYAFLQTKV  216 (227)
T ss_dssp             HHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred             HccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence            988889999999 99999999999997655

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.55  E-value=2.4e-14  Score=139.69  Aligned_cols=171  Identities=18%  Similarity=0.161  Sum_probs=107.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh---hHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG---KLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g---dLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      .++.+|+|.|++||||||||++|++++ +..|+|.|   .++|    + ..++++|+.+++++.+|...|.....-+..+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l-~~~~~~~g~~v~~~r----e-p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~   96 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRL-QERLGPAGRHVVVTR----E-PGGTRLGETLREILLNQPMDLETEALLMFAG   96 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHH-HHHHGGGTCCEEEEE----S-SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH-Hhhccccceeeeeec----C-CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            357899999999999999999999986 55544433   2334    2 3688999999999998876666543333333


Q ss_pred             HHhc------cccCCCcEEEEeCCCC------------CHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC-CC
Q psy11031        300 EMKK------TKYTEADGIVIDGFPR------------EMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI-DN  354 (520)
Q Consensus       300 ~l~~------~~~~~~~G~ILDGFPr------------t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~-dD  354 (520)
                      |...      .....++.+|+|+|..            +.++...++..   +..|+.+|+||++++... |  .|. .|
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~d  176 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPD  176 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCcc
Confidence            3220      0112456789998842            34566666654   356888999999997642 2  232 11


Q ss_pred             ---C-HHHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        355 ---S-VSAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       355 ---~-~e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                         . ...+.+|+ +.|.    .+.+.|  .+.+++|||++++++|++.|.+.|..
T Consensus       177 r~E~~~~ef~~rv~~~Y~----~la~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          177 KFESESDAFFARTRAEYL----RRAQEA--PHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             --CCHHHHHHHHHHHHHH----HHHHHC--TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHH----HHHHHh--cCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence               1 12232332 2222    222333  24689999999999999999988764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.53  E-value=3.3e-13  Score=126.17  Aligned_cols=138  Identities=22%  Similarity=0.389  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQ   98 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~R   98 (520)
                      .|..+++++.+|.    .++++++..++.+.+... ....+||+||||++..|+..|......++.+|+|+||.+++.+|
T Consensus        54 ~~~~i~~~~~~g~----~~~~~~~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R  129 (196)
T 2c95_A           54 RGKKLSEIMEKGQ----LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQR  129 (196)
T ss_dssp             HHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHcCC----cCCHHHHHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            3444444555555    999999999988887642 24679999999999999977766667899999999999999999


Q ss_pred             h-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031         99 I-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus        99 l-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      + .|+....|.+  .+.+.+|+..|.+...|++++|+..+.++.||+++++++++++|.+.+...+
T Consensus       130 ~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~  195 (196)
T 2c95_A          130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL  195 (196)
T ss_dssp             HHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             HHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            9 4543335543  6788999999999999999999887778899999999999999999987654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.53  E-value=6.9e-14  Score=134.26  Aligned_cols=168  Identities=17%  Similarity=0.201  Sum_probs=106.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH---------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL---------  294 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~---------  294 (520)
                      .++|+|.|+.||||||||++|++++. |+..+.         ...+.+++.|+.+++++.++..++.....         
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~---------~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~   72 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM---------TREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   72 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE---------EESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE---------eeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999998751 222222         22356889999999999888766654322         


Q ss_pred             ---HHHHHHHhccccCCCcEEEEeCCC----------C--CHHHHHHHHhh---cCCCCCEEEecCChhhhh-----ccC
Q psy11031        295 ---DIVYAEMKKTKYTEADGIVIDGFP----------R--EMSQLIDFENK---YQIHPPMILIDCSKLVLH-----KGQ  351 (520)
Q Consensus       295 ---~ll~~~l~~~~~~~~~G~ILDGFP----------r--t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-----r~R  351 (520)
                         +.+...+.     .++.+|+|+|.          +  ..++...+...   ...|+.+|+||++++...     |++
T Consensus        73 ~~~~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~  147 (205)
T 4hlc_A           73 HLVLKVIPALK-----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR  147 (205)
T ss_dssp             HHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred             HHHHHHHHHHH-----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence               22222233     45678889874          2  34555555543   346788999999998642     222


Q ss_pred             CCCCHHHHHHHHHHHHHHhHHH-HHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        352 IDNSVSAFRRRLELFRERTLPM-LRAMDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       352 ~dD~~e~~~~Rl~~f~~~~~~l-~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      ..|   .++..-..|++.+... .+.++. .+++++|||++++++|+++|.+.|...+++
T Consensus       148 ~~d---r~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~  204 (205)
T 4hlc_A          148 DQN---RLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK  204 (205)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred             ccc---chhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            222   2222222343333222 222222 246999999999999999999999887754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.52  E-value=2.9e-14  Score=135.24  Aligned_cols=168  Identities=10%  Similarity=0.071  Sum_probs=107.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA----  299 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~----  299 (520)
                      .+.+|+|+|+|||||||+|+.|++++ +..++++ ++++   + ...+++.|+.++.++..+..++......++..    
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l-~~~~~~~-~~~~---~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~   82 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYL-KNNNVEV-KHLY---F-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWE   82 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHH-HHTTCCE-EEEE---S-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHH-HHcCCcE-EEEe---c-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999997 8888888 5666   2 23467888899998887777776544333321    


Q ss_pred             ---HHhccccCCCcEEEEeCCCCCH--HH-H------HHH---HhhcCCCCCEEEecCChhhhhcc---CCC-CCHHHHH
Q psy11031        300 ---EMKKTKYTEADGIVIDGFPREM--SQ-L------IDF---ENKYQIHPPMILIDCSKLVLHKG---QID-NSVSAFR  360 (520)
Q Consensus       300 ---~l~~~~~~~~~G~ILDGFPrt~--~Q-a------e~l---~~~~~~p~~VI~Ld~~~~~~~r~---R~d-D~~e~~~  360 (520)
                         .+.. ....+..+|+|+|+.+.  -+ +      ..+   +..+..++.+|+|+||.+.+.++   |.+ ...+.+.
T Consensus        83 ~~~~i~~-~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~  161 (212)
T 2wwf_A           83 HMNEIKS-LLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQ  161 (212)
T ss_dssp             THHHHHH-HHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHH
T ss_pred             HHHHHHH-HHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHH
Confidence               1220 11235689999998651  11 1      122   22234567799999998764321   111 1113344


Q ss_pred             HHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        361 RRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       361 ~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +|+...+...      .. ...+++||++.+++++++.|.+.+..
T Consensus       162 ~~~~~~~~~~------~~-~~~~~~Id~~~~~~~~~~~i~~~l~~  199 (212)
T 2wwf_A          162 KKIYETYKHF------AH-EDYWINIDATRKIEDIHNDIVKEVTK  199 (212)
T ss_dssp             HHHHHHGGGG------TT-CTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH------hc-cCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            4443211111      11 34578899999999999999887754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.51  E-value=2.2e-13  Score=126.90  Aligned_cols=157  Identities=13%  Similarity=0.223  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH----------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL----------  294 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~----------  294 (520)
                      +|+|+|+|||||||+|+.|++++  .|+.++++.+         ..++..|..+++++.+|...+.....          
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~---------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l   72 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE---------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLI   72 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES---------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC---------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            69999999999999999999974  2889998732         23456788888888888777764321          


Q ss_pred             -HHHHHHHhccccCCCcEEEEe----------CCCCCH--HHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC-CC
Q psy11031        295 -DIVYAEMKKTKYTEADGIVID----------GFPREM--SQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI-DN  354 (520)
Q Consensus       295 -~ll~~~l~~~~~~~~~G~ILD----------GFPrt~--~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~-dD  354 (520)
                       +++...+.     .+..+|+|          |||+..  .++..+...   ...++.+|+|+||++.+. |  +|. .+
T Consensus        73 ~~~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~  147 (195)
T 2pbr_A           73 EEKIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFE  147 (195)
T ss_dssp             HHTHHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccc
Confidence             12222222     35568888          777754  355544322   225778999999997642 1  222 22


Q ss_pred             CHHHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        355 SVSAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       355 ~~e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ..+ +.+|+ ..|.+..    +.|   +.+++||++.++++++++|.+.+..
T Consensus       148 ~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~  191 (195)
T 2pbr_A          148 NKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSG  191 (195)
T ss_dssp             CHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             hHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            344 44444 4454432    234   3578999999999999999887754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.51  E-value=2.8e-13  Score=130.77  Aligned_cols=174  Identities=17%  Similarity=0.213  Sum_probs=110.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC---ccchHHHHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD---FVNRDVVLDIVYAE  300 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~---~vPd~lv~~ll~~~  300 (520)
                      ++.+|+|.|++|||||||+++|++++ +-..+++ .++|    + +.++++|+.+++++.++.   +-|.....-....|
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l-~~~~~~v-~~~~----~-p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R   77 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERL-RERGIEV-QLTR----E-PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR   77 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH-HTTTCCE-EEEE----S-SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHH-HHcCCCc-cccc----C-CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            46889999999999999999999875 3222222 1223    2 368899999999998774   23322221111122


Q ss_pred             Hhc------cccCCCcEEEEeCCC------------CCHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC--CC
Q psy11031        301 MKK------TKYTEADGIVIDGFP------------REMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI--DN  354 (520)
Q Consensus       301 l~~------~~~~~~~G~ILDGFP------------rt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~--dD  354 (520)
                      ...      .....+..+|+|.|.            .+.++...+...   +..|+.+|+|+|+++... |  .|.  |.
T Consensus        78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr  157 (213)
T 4edh_A           78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDR  157 (213)
T ss_dssp             HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCT
T ss_pred             HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCc
Confidence            110      011246788999873            234666666653   356888999999998642 1  221  21


Q ss_pred             C---HHHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        355 S---VSAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       355 ~---~e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      .   ...+.+|+ +.|..    +.+.|.  +.+++|||++++++|++.|.+.|...+..+
T Consensus       158 ~E~~~~~~~~rv~~~y~~----l~~~~~--~~~~vIDa~~s~eeV~~~I~~~l~~~l~~~  211 (213)
T 4edh_A          158 FEQEDRRFFEAVRQTYLQ----RAAQAP--ERYQVLDAGLPLAEVQAGLDRLLPNLLERL  211 (213)
T ss_dssp             TTTSCHHHHHHHHHHHHH----HHHHCT--TTEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHH----HHHHCC--CcEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence            1   12333443 33432    333443  468999999999999999999998887654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.50  E-value=1.4e-13  Score=133.02  Aligned_cols=166  Identities=14%  Similarity=0.164  Sum_probs=106.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC------CccchHH------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG------DFVNRDV------  292 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G------~~vPd~l------  292 (520)
                      +.+|+|.|++|||||||++.|++++ .-..++...+.|     .+.++++|+.|++++..+      ..-|...      
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l-~~~~~~~v~~~r-----ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A   76 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETL-EQLGIRDMVFTR-----EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   76 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH-HHTTCCCEEEEE-----SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH-HHcCCCcceeee-----CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHH
Confidence            5789999999999999999999875 333331113334     347899999999999732      2233211      


Q ss_pred             -----HHHHHHHHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhh---cCCCCCEEEecCChhhhh----
Q psy11031        293 -----VLDIVYAEMKKTKYTEADGIVIDGFP------------REMSQLIDFENK---YQIHPPMILIDCSKLVLH----  348 (520)
Q Consensus       293 -----v~~ll~~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~----  348 (520)
                           +.+.+...+.     .+..+|+|+|.            .+.++...++..   +..|+.+|+|||+++...    
T Consensus        77 ~R~~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~  151 (213)
T 4tmk_A           77 ARVQLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR  151 (213)
T ss_dssp             HHHHHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHH
Confidence                 1223333343     46789999873            235666655543   356888999999998632    


Q ss_pred             -ccCCCCCH---HHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        349 -KGQIDNSV---SAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       349 -r~R~dD~~---e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                       |++.|..+   ..+.+|+ +.|.+.    .   +..+.+++|||++++++|++.|.+.|...+.
T Consensus       152 ~R~~~dr~E~~~~~f~~rv~~~y~~l----a---~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4tmk_A          152 ARGELDRIEQESFDFFNRTRARYLEL----A---AQDKSIHTIDATQPLEAVMDAIRTTVTHWVK  209 (213)
T ss_dssp             HHSSCCTTTTSCHHHHHHHHHHHHHH----H---HTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCccchhhhHHHHHHHHHHHHHHH----H---HHCCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence             23222211   1233333 233322    1   1225689999999999999999999988764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.50  E-value=8.9e-14  Score=128.09  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=90.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHh-hCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQ-DYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~-k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      |.+|+|.|+|||||||+|+.|++ .+ |+.+++. |.+|   ......+. +. +..+...++....+++.+++...+. 
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~-d~~r---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~-   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINR-DDYR---QSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILY-   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECH-HHHH---HHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcC-CcEEecH-HHHH---HHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHh-
Confidence            57899999999999999999998 66 9999998 5555   32222111 10 0111111222223445555666553 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhhh---ccCC--CCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVLH---KGQI--DNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~---r~R~--dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                       ....+.+||+||++.+..+.+.+.+..   +.+..+|+|+|+.+.+.   ..|.  ..+.+.++++++.|....     
T Consensus        74 -~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~-----  147 (181)
T 1ly1_A           74 -GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL-----  147 (181)
T ss_dssp             -SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHH-----
T ss_pred             -hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccC-----
Confidence             224678999999999988877776432   23346899999987642   1232  557888899888887651     


Q ss_pred             HhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .++   . ++||++.+ +.|...|...+..
T Consensus       148 ~~~---~-~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          148 GLP---V-YNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             TCC---C-C---------------------
T ss_pred             CCC---c-cccCCCCC-ceeeehhhhhhhc
Confidence            222   1 23788774 6777777665543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.49  E-value=5.5e-13  Score=124.14  Aligned_cols=135  Identities=16%  Similarity=0.345  Sum_probs=108.3

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhc----CCCCCcEEEeCCCCCHHhHHHHHHhc---CCcCEEEEEEcCHH
Q psy11031         21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKM----SPAAKAFLISGYPRNMRDVVEYSDKI---KTINGVILIAWRQS   93 (520)
Q Consensus        21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~----~~~~~G~ILDGFPRt~~QA~~~~~~~---~~pd~VI~L~~pd~   93 (520)
                      |..++.++.+|.    ++|++++..++..++..    .....+||+||||++..|+..|....   ..++.+|+|+||.+
T Consensus        50 ~~~~~~~~~~g~----~~~~~~~~~~l~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e  125 (196)
T 1tev_A           50 GELIEKYIKEGK----IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNE  125 (196)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHH
T ss_pred             HHHHHHHHHCCC----cCCHHHHHHHHHHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHH
Confidence            333444455455    99999988888776643    12367999999999999886665533   25889999999999


Q ss_pred             HHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         94 LLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        94 ~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ++.+|+ .|+...+|.+  .+.+.+|+..|.+...|++++|.+.+.++.||+++++++|+++|.+.+..
T Consensus       126 ~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          126 ICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            999999 4554445654  67889999999999999999999888888999999999999999998865

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.48  E-value=1.6e-13  Score=134.59  Aligned_cols=169  Identities=15%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC---CccchH-HH------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG---DFVNRD-VV------  293 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G---~~vPd~-lv------  293 (520)
                      ++.+|+|.|++||||||||+.|++.+ +..++++..++|    + +.++++|+.+++++..+   ..+... ..      
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l-~~~~~~~~~~~r----e-p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~   99 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL-QQNGIDHITRTR----E-PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAA   99 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH-HHTTCCCEEEEE----S-SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCCeeeeec----C-CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHH
Confidence            57899999999999999999999986 666666445566    2 36899999999998632   223322 11      


Q ss_pred             -----HHHHHHHHhccccCCCcEEEEeCCC----------C--CHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--c
Q psy11031        294 -----LDIVYAEMKKTKYTEADGIVIDGFP----------R--EMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--G  350 (520)
Q Consensus       294 -----~~ll~~~l~~~~~~~~~G~ILDGFP----------r--t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~  350 (520)
                           .+.+...+.     .++.+|+|.|.          +  +.++...+...   +..|+.+|+|+|+++... |  +
T Consensus       100 R~~~~~~~I~paL~-----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~  174 (236)
T 3lv8_A          100 RVQLVENVIKPALA-----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARG  174 (236)
T ss_dssp             HHHHHHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC---
T ss_pred             HHHHHHHHHHHHHH-----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHh
Confidence                 122233333     46789999773          2  24455555442   356788999999998642 2  2


Q ss_pred             CC--CCC---HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        351 QI--DNS---VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       351 R~--dD~---~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      |.  |..   ...+.+|+...+      .++++....+++|||++++++|+++|.+.|...+..
T Consensus       175 R~~~dr~E~~~~~~~~rv~~~y------~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~  232 (236)
T 3lv8_A          175 RGELDRIEKMDISFFERARERY------LELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ  232 (236)
T ss_dssp             --CCCTTTTSCHHHHHHHHHHH------HHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCcchhhhhHHHHHHHHHHHH------HHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            21  111   123333332211      122222223899999999999999999999876643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.48  E-value=9.2e-13  Score=123.46  Aligned_cols=137  Identities=23%  Similarity=0.364  Sum_probs=111.4

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh
Q psy11031         21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI   99 (520)
Q Consensus        21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl   99 (520)
                      |..+++++.+|.    .+|++++..++.+.+... ....+||+||||++..|+..|......++++|+|+||.+++.+|+
T Consensus        58 ~~~i~~~~~~g~----~~~~~~~~~~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~  133 (199)
T 2bwj_A           58 SKLIRDIMERGD----LVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRL  133 (199)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHcCC----cCCHHHHHHHHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            344444555555    999999999998887542 246799999999999999777665557999999999999999999


Q ss_pred             -hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        100 -DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       100 -~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                       .|+....|.+  .+.+.+|+..|.....|+.++|...+.++.||+++++++++++|.+.+...+
T Consensus       134 ~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~  198 (199)
T 2bwj_A          134 LQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF  198 (199)
T ss_dssp             HHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence             4543234543  5788999999999999999999887777999999999999999999988654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.48  E-value=3.1e-13  Score=128.30  Aligned_cols=175  Identities=13%  Similarity=0.125  Sum_probs=105.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH---
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY---  298 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~---  298 (520)
                      ..++.+|+|+|+|||||||+|+.|++++ +..++++ +.++   + ...+++.|..++.++..+..++......++.   
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~~~v-~~~~---~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r   79 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL-CAAGHRA-ELLR---F-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANR   79 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH-HHTTCCE-EEEE---S-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH-HHcCCcE-EEee---C-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999999986 7666666 3344   2 2224677888888887766666543321110   


Q ss_pred             ----HHHhccccCCCcEEEEeCCC-----C-------CHHHHHHHHhhcCCCCCEEEecCChhhhh-c-cCCCCC--HHH
Q psy11031        299 ----AEMKKTKYTEADGIVIDGFP-----R-------EMSQLIDFENKYQIHPPMILIDCSKLVLH-K-GQIDNS--VSA  358 (520)
Q Consensus       299 ----~~l~~~~~~~~~G~ILDGFP-----r-------t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-~R~dD~--~e~  358 (520)
                          ..+.. ....+..+|+|+|.     +       ..++...++.....++.+|+|+||.+.+. | .|..+.  ...
T Consensus        80 ~~~~~~i~~-~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~  158 (215)
T 1nn5_A           80 WEQVPLIKE-KLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGA  158 (215)
T ss_dssp             HTTHHHHHH-HHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHH
T ss_pred             HHHHHHHHH-HHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHH
Confidence                11220 11235679999542     2       23444444444445678999999987642 2 111111  112


Q ss_pred             HHHHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        359 FRRRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       359 ~~~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      +..|+...      ..++... ...+++||++.+++++++.|.+.|...+..
T Consensus       159 ~~~~~~~~------~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~  204 (215)
T 1nn5_A          159 FQERALRC------FHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT  204 (215)
T ss_dssp             HHHHHHHH------HHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH------HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            22232211      1111111 235789999999999999999998877654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.47  E-value=4.1e-13  Score=124.80  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccch--HHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVNR--DVVLDIV  297 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vPd--~lv~~ll  297 (520)
                      ++|+|+|+|||||||+|+.|++++ +     +.+++.+++++   +.. ......+.     -..+...+.  ..+...+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~   72 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEIL-DNQGINNKIINYGDFML---ATALKLGYAKDR-----DEMRKLSVEKQKKLQIDA   72 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH-HTTTCCEEEEEHHHHHH---HHHHTTTSCSSH-----HHHTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH-HhcCceEEEEECChHHH---HHHHhcccccch-----hhhhcCCHHHHHHHHHHH
Confidence            479999999999999999999987 7     89999999987   332 11111110     011234444  3334444


Q ss_pred             HHHHhcccc--CCCcEEEEeCCCCCHHH--------HHHHHhhcCCCCCEEEecCChhhhh-c---c--CC--C-CCHHH
Q psy11031        298 YAEMKKTKY--TEADGIVIDGFPREMSQ--------LIDFENKYQIHPPMILIDCSKLVLH-K---G--QI--D-NSVSA  358 (520)
Q Consensus       298 ~~~l~~~~~--~~~~G~ILDGFPrt~~Q--------ae~l~~~~~~p~~VI~Ld~~~~~~~-r---~--R~--d-D~~e~  358 (520)
                      ..++.. ..  ..+..||+|||+....|        ...+...  .++.+|+|+|+++... |   .  |.  + ...+.
T Consensus        73 ~~~i~~-~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~  149 (194)
T 1nks_A           73 AKGIAE-EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESV  149 (194)
T ss_dssp             HHHHHH-HHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHH
T ss_pred             HHHHHH-HhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHH
Confidence            444441 11  35678999998653333        2333332  3677999999986522 2   2  32  1 23343


Q ss_pred             HHHHHHHHHHHhHHHHHHhhhCCCEEEE-ECCCCHHHHHHHHHHHH
Q psy11031        359 FRRRLELFRERTLPMLRAMDVETRLTIV-DGDTQLPQVREEFERVL  403 (520)
Q Consensus       359 ~~~Rl~~f~~~~~~l~~~y~~~~~l~~I-Da~~~~e~V~~~I~~~I  403 (520)
                      +..+ ...++........|.. ..+++| |++.++++++++|.+.|
T Consensus       150 ~~~~-~~~~~~~~~~~~~~~~-~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          150 ILET-INFARYAATASAVLAG-STVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHT-CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence            3211 1122222333344422 347889 99999999999998765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.47  E-value=1.3e-12  Score=121.31  Aligned_cols=135  Identities=16%  Similarity=0.318  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC---CcCEEEEEEcCHHHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK---TINGVILIAWRQSLLE   96 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~---~pd~VI~L~~pd~~l~   96 (520)
                      .|..+++++.+|.    ++|++++..++.+.+... ...++|+||||++..|+..|.....   .++.||+|+||.+++.
T Consensus        51 ~~~~i~~~~~~g~----~~~~~~~~~~l~~~i~~~-~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~  125 (194)
T 1qf9_A           51 DGEMIATMIKNGE----IVPSIVTVKLLKNAIDAN-QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT  125 (194)
T ss_dssp             THHHHHHHHHTTC----CCCHHHHHHHHHHHHHTS-TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHH
T ss_pred             HHHHHHHHHHCCC----CCCHHHHHHHHHHHHHhc-CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHH
Confidence            3444445555555    999999999999888653 5678999999999999877754433   6899999999999999


Q ss_pred             HHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         97 RQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        97 ~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      +|+ .|+..++|.+  .+.+.+|+..|.++..++.++|...+.++.||+++++++++++|.+.+..
T Consensus       126 ~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            999 4544335553  77899999999999999999998877789999999999999999999875

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.45  E-value=3.2e-12  Score=123.65  Aligned_cols=169  Identities=12%  Similarity=0.218  Sum_probs=108.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC--ccchHHHH-------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD--FVNRDVVL-------  294 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~--~vPd~lv~-------  294 (520)
                      ++..|+|.|++||||||+++.|++++ +..    +.+++    +...++++|+.|++++..+.  .-|.....       
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l-~~~----~~~~~----ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~   74 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKL-QPN----CKLLK----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRW   74 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHH-CSS----EEEEE----SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-ccc----ceEEE----ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999997 652    24445    33458999999999997654  22221111       


Q ss_pred             ---HHHHHHHhccccCCCcEEEEeCCC--------------CCHHHHHHHHhhcCCCCCEEEe-cCChhhhhcc---CCC
Q psy11031        295 ---DIVYAEMKKTKYTEADGIVIDGFP--------------REMSQLIDFENKYQIHPPMILI-DCSKLVLHKG---QID  353 (520)
Q Consensus       295 ---~ll~~~l~~~~~~~~~G~ILDGFP--------------rt~~Qae~l~~~~~~p~~VI~L-d~~~~~~~r~---R~d  353 (520)
                         +.+...+.     .++.+|+|.|.              ..+++...+...+..|+.+|+| |++.+...++   +.+
T Consensus        75 ~~~~~I~paL~-----~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~d  149 (216)
T 3tmk_A           75 EIVDKIKKDLL-----EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE  149 (216)
T ss_dssp             TTHHHHHHHHH-----TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCC
T ss_pred             HHHHHHHHHHH-----cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcc
Confidence               12222233     46778999883              2455555554455568889999 9999864321   111


Q ss_pred             --CCHHHHHHHHHH-HHHHhHHHHHHhhhCCCEEEEE-CCCCHHHHHHHHHHHHHHHHHH
Q psy11031        354 --NSVSAFRRRLEL-FRERTLPMLRAMDVETRLTIVD-GDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       354 --D~~e~~~~Rl~~-f~~~~~~l~~~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~~~i~~  409 (520)
                        +. ..+.+|+.. |.+....... | ....+++|| |++++++|++.|.+.|...+..
T Consensus       150 r~E~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~  206 (216)
T 3tmk_A          150 RYET-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALIWQIVEPVLST  206 (216)
T ss_dssp             TTCC-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             cccH-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence              12 233334333 2222211111 1 235799999 9999999999999999887643

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.44  E-value=4.7e-13  Score=130.16  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=102.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCC-eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH----
Q psy11031        219 SVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV----  293 (520)
Q Consensus       219 ~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv----  293 (520)
                      ++...++..|+|.|++||||||+++.|++++ +. ..+++--+.|     .+.++++|+.|++++...........    
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l-~~~~g~~v~~~tr-----eP~~t~~g~~ir~~l~~~~~~~~~~e~llf   88 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYL-SEIYGVNNVVLTR-----EPGGTLLNESVRNLLFKAQGLDSLSELLFF   88 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCGGGEEEEE-----SSCSSHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHH-hhccCceeeEeee-----CCCCChHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            4456678999999999999999999999986 44 3333321123     34678999999999875322332221    


Q ss_pred             --------HHHHHHHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhhcC--CCCCEEEecCChhhhhccC
Q psy11031        294 --------LDIVYAEMKKTKYTEADGIVIDGFP------------REMSQLIDFENKYQ--IHPPMILIDCSKLVLHKGQ  351 (520)
Q Consensus       294 --------~~ll~~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~~~--~p~~VI~Ld~~~~~~~r~R  351 (520)
                              .+++...+.     .++.+|+|+|.            .+.++...+.....  .|+.+|+|+++++...++.
T Consensus        89 ~a~R~~~~~~~I~paL~-----~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri  163 (223)
T 3ld9_A           89 IAMRREHFVKIIKPSLM-----QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS  163 (223)
T ss_dssp             HHHHHHHHHHTHHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------
T ss_pred             HHHHHHHHHHHHHHHHh-----cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh
Confidence                    111222222     45678999884            34666677766553  6788999999998643221


Q ss_pred             CCCCH----HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        352 IDNSV----SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       352 ~dD~~----e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      ..|.-    ..+.+|+...   ...+.+.|  .+.+++|||++++++| ++|.+.|...+.
T Consensus       164 ~rdr~E~~~~e~~~rv~~~---y~~la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~lg  218 (223)
T 3ld9_A          164 CKNGYEFADMEFYYRVRDG---FYDIAKKN--PHRCHVITDKSETYDI-DDINFVHLEVIK  218 (223)
T ss_dssp             --------CHHHHHHHHHH---HHHHHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred             ccCccccchHHHHHHHHHH---HHHHHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence            11111    1222222211   12222333  2468999999999999 999999887764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.43  E-value=1.8e-12  Score=122.63  Aligned_cols=158  Identities=17%  Similarity=0.135  Sum_probs=103.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+.+|+|+|+|||||||+|+.|++.+ |+.+++.+++..   ...          ...+..|....+......+. .+..
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~~~---~~~----------~~~~~~g~~~~~~~~~~~~~-~l~~   81 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDALHP---PEN----------IRKMSEGIPLTDDDRWPWLA-AIGE   81 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGGCC---HHH----------HHHHHHTCCCCHHHHHHHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcCcc---hhh----------HHHHhcCCCCCchhhHHHHH-HHHH
Confidence            46789999999999999999999997 999999987764   111          11122233333322222222 1220


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cC--CCCCHHHHHHHHHHHHHHhHHHHHHhh
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQ--IDNSVSAFRRRLELFRERTLPMLRAMD  378 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R--~dD~~e~~~~Rl~~f~~~~~~l~~~y~  378 (520)
                       ....+.+||+|+......+.+.+......+..+|+|+|+.+.+.+   .|  .....+.+++.++.+.    +   .|.
T Consensus        82 -~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~----~---~~~  153 (202)
T 3t61_A           82 -RLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLE----D---PRG  153 (202)
T ss_dssp             -HHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCC----C---CTT
T ss_pred             -HHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcC----C---CCC
Confidence             123567899999888888888888877656679999999876421   22  1123444433333221    1   122


Q ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        379 VETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       379 ~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                       ....++||++.+++++.+.|...|..
T Consensus       154 -~~~~~~Id~~~~~~e~~~~I~~~l~~  179 (202)
T 3t61_A          154 -EVRTVAVDVAQPLAEIVREALAGLAR  179 (202)
T ss_dssp             -STTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             -CCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence             22467899999999999999988865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.43  E-value=4.1e-13  Score=126.85  Aligned_cols=162  Identities=7%  Similarity=0.059  Sum_probs=92.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHH--
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIV--  297 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll--  297 (520)
                      ++.+|+|+|+|||||||+|+.|++++ +..  .+.+    +         .+.|+.+++++..+..  .++.....++  
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~----~---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   68 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWI-ELKRDVYLT----E---------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHA   68 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH-TTTSCEEEE----E---------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH-hhcCCEEEe----c---------CCcHHHHHHHHhccccccCCCHHHHHHHHH
Confidence            36789999999999999999999987 653  2221    1         1133445555543321  1222211111  


Q ss_pred             HH-------HHhccccCCCcEEEEeCCCCCH-----------HHHHHHHhhcCCCCCEEEecCChhhhh-c---cCCC-C
Q psy11031        298 YA-------EMKKTKYTEADGIVIDGFPREM-----------SQLIDFENKYQIHPPMILIDCSKLVLH-K---GQID-N  354 (520)
Q Consensus       298 ~~-------~l~~~~~~~~~G~ILDGFPrt~-----------~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r---~R~d-D  354 (520)
                      ..       .+.. ....+..+|+||||.+.           +++..+...+..++.+|+|+|+.+.+. |   +|.. +
T Consensus        69 ~~r~~~~~~~i~~-~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~  147 (213)
T 2plr_A           69 TDFSDRYERYILP-MLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIK  147 (213)
T ss_dssp             HHHHHHHHHTHHH-HHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHH-HHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccc
Confidence            11       1110 11245689999999763           334455555555778999999987532 1   2321 1


Q ss_pred             C-------------H---HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        355 S-------------V---SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       355 ~-------------~---e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      .             .   +.+.+|+..++..      +... ..+++||++.++++|++.|.+.|...+
T Consensus       148 ~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~------~~~~-~~~~~Id~~~~~e~v~~~I~~~l~~~~  209 (213)
T 2plr_A          148 PQEAGADIFPGLSPEEGFLKYQGLITEVYDK------LVKD-ENFIVIDGTKTPKEIQIQIRKFVGELI  209 (213)
T ss_dssp             TTTTTTTTCTTSCHHHHHHHHHHHHHHHHHH------HTTT-TTCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHHHH------HHhh-CCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            1             1   1233333322221      1111 147889999999999999998887543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.42  E-value=6.7e-13  Score=123.34  Aligned_cols=164  Identities=13%  Similarity=0.161  Sum_probs=94.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcCCccc--hHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAGDFVN--RDVVLDI  296 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G~~vP--d~lv~~l  296 (520)
                      +.+|+|.|+|||||||+|+.|++++ +     +.++++++++|   +... .+..  ....++.   ...+  ...+...
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~i~~~~~~r---~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~   73 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL-RKEGVNYKMVSFGSVMF---EVAKEENLV--SDRDQMR---KMDPETQKRIQKM   73 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH-HTTTCCCEEEEHHHHHH---HHHHHTTSC--SSGGGGS---SCCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH-HhcCcceEEEehHHHHH---HHHhccCCC--CCHHHHh---cCCHHHHHHHHHH
Confidence            4689999999999999999999987 8     99999999998   3321 1110  0011111   1111  1222333


Q ss_pred             HHHHHhccccCCCcEEEEeCCCCCHHHH--------HHHHhhcCCCCCEEEecCChhhhh--------ccCCCCCHHHHH
Q psy11031        297 VYAEMKKTKYTEADGIVIDGFPREMSQL--------IDFENKYQIHPPMILIDCSKLVLH--------KGQIDNSVSAFR  360 (520)
Q Consensus       297 l~~~l~~~~~~~~~G~ILDGFPrt~~Qa--------e~l~~~~~~p~~VI~Ld~~~~~~~--------r~R~dD~~e~~~  360 (520)
                      +.+.+.  ......+||+||++....++        ..+...  .++.+|||+||.+.+.        |+|...+.+.+.
T Consensus        74 ~~~~i~--~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~  149 (192)
T 1kht_A           74 AGRKIA--EMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIE  149 (192)
T ss_dssp             HHHHHH--HHHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHH
T ss_pred             HHHHHH--hhccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHH
Confidence            333343  22235689999986421111        122222  2567999999987642        233444555554


Q ss_pred             HHHHHHHHHhHHHHHHhhhCCCEEEE-ECCCCHHHHHHHHHHHH
Q psy11031        361 RRLELFRERTLPMLRAMDVETRLTIV-DGDTQLPQVREEFERVL  403 (520)
Q Consensus       361 ~Rl~~f~~~~~~l~~~y~~~~~l~~I-Da~~~~e~V~~~I~~~I  403 (520)
                      .+... +.........|.. ..++.| |++.+++++++.|.+.|
T Consensus       150 ~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          150 QHQFM-NRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHH-HHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence            44332 2233333344433 234455 55567999999998765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.41  E-value=3.1e-12  Score=120.91  Aligned_cols=130  Identities=15%  Similarity=0.253  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLL   95 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l   95 (520)
                      .|..+++++.+|.    ++|++.+..++.+++....+..|||+||||++..|+..|..    .+..|+.||+|+||.+++
T Consensus        65 ~g~~i~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~  140 (201)
T 2cdn_A           65 LGVEAKRYLDAGD----LVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL  140 (201)
T ss_dssp             HHHHHHHHHHHTC----CCCHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             HHHHHHHHHHcCC----cccHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence            3444455555565    99999999999988865345679999999999999865443    234689999999999999


Q ss_pred             HHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         96 ERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        96 ~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      .+|+ .|+..  ..+++.+.+|+..|.+...|+.++|.  ..++.||+++++++|+++|.+.+
T Consensus       141 ~~Rl~~R~r~--~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          141 LERLKGRGRA--DDTDDVILNRMKVYRDETAPLLEYYR--DQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             HHHHHHHCCT--TCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEEEECCSCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCC--CCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHH
Confidence            9999 45311  12477889999999999999999994  35899999999999999998876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=9.5e-13  Score=124.65  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l  301 (520)
                      ....+|+|+|+|||||||+++.|++++ |+.+++.++++.   ...      |..+.+++. .|.    .....+....+
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~~~---~~~------g~~i~~~~~~~~~----~~~~~~e~~~l   88 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWYIE---ERF------HKTVGELFTERGE----AGFRELERNML   88 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHHHH---HHH------TSCHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHHHH---HHh------CCcHHHHHHhcCh----HHHHHHHHHHH
Confidence            345789999999999999999999997 999999999887   321      222333332 222    11222222222


Q ss_pred             hccccCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh------c-cCC---CCCHHHHHHHHHHHHH
Q psy11031        302 KKTKYTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH------K-GQI---DNSVSAFRRRLELFRE  368 (520)
Q Consensus       302 ~~~~~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~------r-~R~---dD~~e~~~~Rl~~f~~  368 (520)
                      .  ......+|||+   |.+...+..+.+..    +..+|||+|+.+.+.      + .|+   +++.+.+..++..+..
T Consensus        89 ~--~l~~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~  162 (199)
T 3vaa_A           89 H--EVAEFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALE  162 (199)
T ss_dssp             H--HHTTCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHH
T ss_pred             H--HHhhcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHH
Confidence            2  22245678998   77877777776654    467999999997532      1 232   3456666777766665


Q ss_pred             HhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHHH
Q psy11031        369 RTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKII  407 (520)
Q Consensus       369 ~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~i  407 (520)
                      ...+   +|...  -++||++. +++++.+.|.+.|...+
T Consensus       163 ~r~~---~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          163 KRAP---FYTQA--QYIFNADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             HHHH---HHTTS--SEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred             HHHH---HHhhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            5544   45542  35688887 99999999998887654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.37  E-value=3e-12  Score=121.96  Aligned_cols=164  Identities=17%  Similarity=0.210  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHH------H
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIV------Y  298 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll------~  298 (520)
                      .|+|.|+.||||||||++|++++  .|..++.+    |     .+.+++.++.++.++..+...|.....-..      .
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t----r-----eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~   72 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK----R-----EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLV   72 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE----E-----SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE----E-----CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Confidence            68999999999999999998864  14444433    2     357889999999988877766654332111      1


Q ss_pred             HHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhh---cCCCCCEEEecCChhhhh-ccCCC---CCHHHH
Q psy11031        299 AEMKKTKYTEADGIVIDGFP------------REMSQLIDFENK---YQIHPPMILIDCSKLVLH-KGQID---NSVSAF  359 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r~R~d---D~~e~~  359 (520)
                      ..+.. ....++.+|+|+|-            ...++...+...   ...|+.+|+||++++... |....   .+.+ +
T Consensus        73 ~~I~~-~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~e-f  150 (197)
T 3hjn_A           73 TEIKQ-YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKRE-F  150 (197)
T ss_dssp             HHHHH-HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHH-H
T ss_pred             HHHHH-HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHH-H
Confidence            22220 23356778999884            223444444332   345788999999998643 22111   1222 2


Q ss_pred             HHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        360 RRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       360 ~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      .+|. +.|.+    +.+.+  ..++++|||++++++|+++|.+.|.+.+
T Consensus       151 ~~rv~~~y~~----la~~~--~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          151 LERVREGYLV----LAREH--PERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             HHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHH----HHHhC--CCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            2222 22222    22222  2468999999999999999998887654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.37  E-value=3.7e-12  Score=118.32  Aligned_cols=128  Identities=21%  Similarity=0.376  Sum_probs=101.5

Q ss_pred             HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHHH
Q psy11031         21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLLE   96 (520)
Q Consensus        21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l~   96 (520)
                      |..+++++.+|.    .+|++.+..++.+++.     .|||+||||++..|+..+..    .+..++.||+|+||.+++.
T Consensus        50 ~~~i~~~~~~g~----~~~~~~~~~~~~~~l~-----~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~  120 (186)
T 3cm0_A           50 GERVRPIMERGD----LVPDDLILELIREELA-----ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELV  120 (186)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHHHHCC-----SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHH
T ss_pred             HHHHHHHHHcCC----cCCHHHHHHHHHHHhc-----CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH
Confidence            333444455555    9999999998887764     25999999999999855432    2225899999999999999


Q ss_pred             HHh-hhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         97 RQI-DYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        97 ~Rl-~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +|+ .|+...+|.  ..+.+.+|+..|.+.+.|+.++|.+.+.++.||+++++++|+++|.+.+
T Consensus       121 ~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          121 RRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            999 453212343  3678899999999999999999998888999999999999999998876

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.35  E-value=1.8e-12  Score=124.30  Aligned_cols=167  Identities=16%  Similarity=0.268  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc----ccCCcch--HHHHhh-----------------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE----DDGEGLN--SRIKSS-----------------  281 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~----~~~t~~g--~~i~~~-----------------  281 (520)
                      +.+|.|+|++||||||+|+.|++.| |+.+++.|++++   ...    ..+..+.  ..+...                 
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~-g~~~~d~g~i~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL-QWHLLDSGAIYR---VLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEV   80 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-CCCcccCcceee---hhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceE
Confidence            4689999999999999999999998 999999999998   321    1222221  111111                 


Q ss_pred             hhcCCccchHHHH-------------HHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031        282 VSAGDFVNRDVVL-------------DIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV  346 (520)
Q Consensus       282 l~~G~~vPd~lv~-------------~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~  346 (520)
                      +..|..+++.+..             +.+...+...  ......|||+||+...  +     ..+..++.+|||+|+.+.
T Consensus        81 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~-----~~~~~~d~~i~l~~~~e~  153 (227)
T 1cke_A           81 ILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--T-----VVFPDAPVKIFLDASSEE  153 (227)
T ss_dssp             EETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--C-----CCCTTCSEEEEEECCHHH
T ss_pred             EECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--c-----eEecCCCEEEEEeCCHHH
Confidence            1234444333211             2233333210  2235679999998432  1     233456779999999875


Q ss_pred             hh-c------cCC-CCCHHH----HHHHHH-HHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031        347 LH-K------GQI-DNSVSA----FRRRLE-LFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKI  406 (520)
Q Consensus       347 ~~-r------~R~-dD~~e~----~~~Rl~-~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~  406 (520)
                      +. |      .|. ..+.+.    +.+|+. .|.....++..+++    .++||++ .++++|+++|.+.+...
T Consensus       154 ~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~----~~~Id~~~~~~~ev~~~I~~~l~~~  223 (227)
T 1cke_A          154 RAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAAD----ALVLDSTTLSIEQVIEKALQYARQK  223 (227)
T ss_dssp             HHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTT----CEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCC----EEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            32 2      111 112222    333322 23333334333222    2689999 89999999999888654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.32  E-value=1.1e-12  Score=131.68  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=101.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      |.+|+|.|+|||||||+|+.|++++.|+.+++.+ .+|   ......+. |.. ..+...++..+.+++.+++...+.  
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r---~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~--   73 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYR---QSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILY--   73 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHH---HHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTT--
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHH---HHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHh--
Confidence            4689999999999999999999975599999998 555   22221111 110 111111222233444445554442  


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLELFRERTLPMLRA  376 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~f~~~~~~l~~~  376 (520)
                      ....+.+||+||++.+..+.+.+.+..   +.+..+|+|+|+.+.+.     |.......+.++++++.|....... .|
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~~~~~-~~  152 (301)
T 1ltq_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLP-VY  152 (301)
T ss_dssp             SCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHTCC-CC
T ss_pred             hccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhcccCCc-ce
Confidence            114578999999999988877776432   23346899999987642     2223457888999998887654321 01


Q ss_pred             -hhh-CCCEEEEECCCCHHHHHH
Q psy11031        377 -MDV-ETRLTIVDGDTQLPQVRE  397 (520)
Q Consensus       377 -y~~-~~~l~~IDa~~~~e~V~~  397 (520)
                       +.. ....+.+|.+.+++++..
T Consensus       153 ~~~~~~~~~i~iD~dgtl~~~~~  175 (301)
T 1ltq_A          153 NGTPGKPKAVIFDVDGTLAKMNG  175 (301)
T ss_dssp             CCCTTSCEEEEEETBTTTBCCSS
T ss_pred             eccccccceEEEeCCCCcccccC
Confidence             111 224566888877555433

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.31  E-value=3.6e-11  Score=109.66  Aligned_cols=145  Identities=13%  Similarity=0.163  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|+|+|||||||+|+.|++++ |+.+++.+.+..   ...        .+..++            +. ...+.   
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~~~---~~~--------~~~~~~------------~~-~~~l~---   53 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSFEL---AKS--------GNEKLF------------EH-FNKLA---   53 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCHHH---HTT--------CHHHHH------------HH-HHHHT---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCccccc---chh--------HHHHHH------------HH-HHHHH---
Confidence            379999999999999999999997 999999988776   221        011111            01 01122   


Q ss_pred             cCCCcEEEEeCCC---------------CCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHH
Q psy11031        306 YTEADGIVIDGFP---------------REMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLEL  365 (520)
Q Consensus       306 ~~~~~G~ILDGFP---------------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~  365 (520)
                        .+..+|+|.|.               ....+...+...+..++.+|||+++.+.+.     |+|.....+.+++..+.
T Consensus        54 --~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~  131 (173)
T 3kb2_A           54 --DEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILEL  131 (173)
T ss_dssp             --TCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred             --hCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence              24456666331               245566777776667788999999987542     33443343333333333


Q ss_pred             HHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031        366 FRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKI  406 (520)
Q Consensus       366 f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~  406 (520)
                      |    ......|.  ...++||++ .++++|.++|...+...
T Consensus       132 ~----~~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~  167 (173)
T 3kb2_A          132 Y----REVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE  167 (173)
T ss_dssp             H----HHHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred             H----HHHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            3    33445554  357889999 59999999998887663

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.27  E-value=2.6e-11  Score=112.66  Aligned_cols=162  Identities=14%  Similarity=0.114  Sum_probs=95.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ++.|+|+|+|||||||+|+.|++++ |+.+++.+++++   +..  +..    +.+.+. .|+..-.++..+++..... 
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~~~---~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~-   73 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKEIE---KRT--GAD----IAWIFEMEGEAGFRRREREMIEALCK-   73 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHH--TSC----HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHHHH---HHc--CCC----hhhHHHHhCHHHHHHHHHHHHHHHHh-
Confidence            5689999999999999999999997 999999999987   322  112    222221 1221111233333333222 


Q ss_pred             cccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-------cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        304 TKYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-------GQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       304 ~~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-------~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                          ....+|..|  .+.+....+.+...    ..+|||+|+.+.+. |       .|+.........+++.......++
T Consensus        74 ----~~~~vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~  145 (185)
T 3trf_A           74 ----LDNIILATGGGVVLDEKNRQQISET----GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPL  145 (185)
T ss_dssp             ----SSSCEEECCTTGGGSHHHHHHHHHH----EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ----cCCcEEecCCceecCHHHHHHHHhC----CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence                123344444  56666666666553    26899999987532 1       233333333344555444444444


Q ss_pred             HHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDT-QLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~i~~  409 (520)
                      ...+.   . ++||++. +++++.+.|.+.|...+..
T Consensus       146 y~~~a---d-~~Idt~~~~~~e~~~~I~~~l~~~~~~  178 (185)
T 3trf_A          146 YQAMA---D-LVYPTDDLNPRQLATQILVDIKQTYSD  178 (185)
T ss_dssp             HHHHC---S-EEEECTTCCHHHHHHHHHHHSCC----
T ss_pred             HhhcC---C-EEEECCCCCHHHHHHHHHHHHHHHhhh
Confidence            33222   2 5689887 8999999999888776654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.27  E-value=2.2e-11  Score=113.46  Aligned_cols=168  Identities=12%  Similarity=0.052  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .+.+|+|+|+|||||||+|+.|++++ |+.+++.+.+..   .........+......+..   .--+.+.+.+...+. 
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-   75 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAFKE---VMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ-   75 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHHHH---HHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh-
Confidence            46899999999999999999999997 999999866544   1111000000000000000   000111222233333 


Q ss_pred             cccCCCcEEEEeCCCCCHHH---HHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCH-HHHHHHHHHHHH--HhHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQ---LIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSV-SAFRRRLELFRE--RTLP  372 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Q---ae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~-e~~~~Rl~~f~~--~~~~  372 (520)
                          .+.++|+||+++...+   ...+......+..+|+|+|+.+.+.     |++..+.. ....   ..|..  ....
T Consensus        76 ----~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~---~~~~~~~~~~~  148 (193)
T 2rhm_A           76 ----SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCD---DRSPADLELVR  148 (193)
T ss_dssp             ----TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC-----------CHHHHHHHH
T ss_pred             ----CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCccccc---CccCcchhhHH
Confidence                4678999999843222   2224444445567999999987642     21111111 0000   11111  0111


Q ss_pred             HHH----HhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        373 MLR----AMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       373 l~~----~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      +.+    +|. ....++||++...+++.++|...|...+
T Consensus       149 ~~~~~~~~~~-~~~~~~Idt~~~~~~~~~~i~~~i~~~l  186 (193)
T 2rhm_A          149 SRGDIPPLPL-GGPLLTVDTTFPEQIDMNAIVQWVRQHL  186 (193)
T ss_dssp             HSCCCCCCCC-CSCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred             HHhcCCCccC-CCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence            111    221 1357889999876666666666665544

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.25  E-value=4.9e-11  Score=109.26  Aligned_cols=153  Identities=8%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ++|+|.|+|||||||+|+.|++++ |+.+++.+++++   ..  .+....    +++. .|...    ...+....+.  
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~~~---~~--~g~~~~----~~~~~~~~~~----~~~~~~~~~~--   66 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIFMQ---HT--SGMTVA----DVVAAEGWPG----FRRRESEALQ--   66 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HH--HCSCHH----HHHHHHHHHH----HHHHHHHHHH--
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHHHH---HH--hCCCHH----HHHHHcCHHH----HHHHHHHHHH--
Confidence            469999999999999999999997 999999999988   33  222222    2221 12211    1122112222  


Q ss_pred             ccCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---c--c----CCCCCHHHHHHHHHHHHHHhHH
Q psy11031        305 KYTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH---K--G----QIDNSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       305 ~~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r--~----R~dD~~e~~~~Rl~~f~~~~~~  372 (520)
                      ... ..++||+ |  ++........|..    ++.+|+|+||.+.+.   .  .    |+....+...+++..+.....+
T Consensus        67 ~l~-~~~~vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~  141 (173)
T 1e6c_A           67 AVA-TPNRVVATGGGMVLLEQNRQFMRA----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREA  141 (173)
T ss_dssp             HHC-CSSEEEECCTTGGGSHHHHHHHHH----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             Hhh-cCCeEEECCCcEEeCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHH
Confidence            222 3456665 5  4444444555543    357999999987531   1  2    2333334555666665544433


Q ss_pred             HHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGD-TQLPQVREEFERVLK  404 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~  404 (520)
                         +|...  .++||++ .+++++.+.|...+.
T Consensus       142 ---~~~~~--~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          142 ---LYQDV--AHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             ---HHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred             ---HHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence               34432  2478988 899999998877653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.24  E-value=7.1e-11  Score=112.93  Aligned_cols=168  Identities=14%  Similarity=0.192  Sum_probs=98.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-----h-cCCccch-------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-----S-AGDFVNR-------  290 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-----~-~G~~vPd-------  290 (520)
                      .+.+|+|.|++||||||+|+.|++ + |+.+++.+++.+   .....+......+.+.+     . .|..-..       
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f   77 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIAR---QVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIF   77 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHH---HTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHH---HHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHh
Confidence            467899999999999999999998 6 999999999998   44333333333333322     1 1211111       


Q ss_pred             ----------HHHHHHHHHHHhccccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCH
Q psy11031        291 ----------DVVLDIVYAEMKKTKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSV  356 (520)
Q Consensus       291 ----------~lv~~ll~~~l~~~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~  356 (520)
                                .++...+...+.. ..+. ..++++.++|...+..  +.   ..++.+|||+|+.+.+.+   .|...+.
T Consensus        78 ~~~~~~~~l~~~~~p~v~~~~~~-~~~~~~~~~vi~~~~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~~~~~  151 (218)
T 1vht_A           78 ANPEEKNWLNALLHPLIQQETQH-QIQQATSPYVLWVVPLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRDDVTR  151 (218)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH-HHHHCCSSEEEEECTTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHHTCCH
T ss_pred             CCHHHHHHHHHhHCHHHHHHHHH-HHHhcCCCEEEEEeeeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence                      1111122111110 0011 2345555556543322  21   235789999999976432   2433455


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      +.+.+|+...    .+...++...+  ++||++.+++++.+.|...+...+.
T Consensus       152 ~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          152 EHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             HHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHHH
Confidence            6666665531    22233333333  5789999999999999998877654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.24  E-value=1.4e-10  Score=108.43  Aligned_cols=159  Identities=16%  Similarity=0.244  Sum_probs=93.9

Q ss_pred             cCCCCCeEEEEEcCCCCChhHHHHHHHhh-CCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCcc---chHHHHH
Q psy11031        220 VERNTPLVVWVVGGPGSSKSEMCQKVLQD-YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFV---NRDVVLD  295 (520)
Q Consensus       220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k-~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~v---Pd~lv~~  295 (520)
                      +...++++|+|+|+|||||||+|+.|+++ + |+.+++++++++   +.. .....++....     ..+   +++.+.+
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-g~~~id~d~~~~---~~~-~~~~~~~~~~~-----~~~~r~~~~~~~~   74 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAELD-GFQHLEVGKLVK---ENH-FYTEYDTELDT-----HIIEEKDEDRLLD   74 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHHST-TEEEEEHHHHHH---HTT-CSCC------C-----CCCCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCEEeeHHHHHH---Hhh-hhhhHHHHhhh-----cccCCCCHHHHHH
Confidence            44556789999999999999999999999 6 999999999999   321 11122222111     122   3444455


Q ss_pred             HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHHH-H-HHHHh
Q psy11031        296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRLE-L-FRERT  370 (520)
Q Consensus       296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~-~-f~~~~  370 (520)
                      .+...+.     +..|+|+|+..+.     .|++.  ..+.||+|+|+.+.+.+   .|. .+.+.+..++. + +....
T Consensus        75 ~l~~~~~-----~~g~~vi~~~~~~-----~~~~~--~~~~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~~~~~q~~~~l~  141 (184)
T 1y63_A           75 FMEPIMV-----SRGNHVVDYHSSE-----LFPER--WFHMVVVLHTSTEVLFERLTKRQ-YSEAKRAENMEAEIQCICE  141 (184)
T ss_dssp             HHHHHHT-----SSSEEEEECSCCT-----TSCGG--GCSEEEEEECCHHHHHHHHHHTT-CCHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHh-----ccCCEEEeCchHh-----hhhhc--cCCEEEEEECCHHHHHHHHHhCC-CChhhhHhhHHHHHHHHHH
Confidence            5555443     2458999986432     12221  14579999999976432   232 23444444442 2 33333


Q ss_pred             HHHHHHhhhCCCEEEEE-CCCCHHHHHHHHHHHHH
Q psy11031        371 LPMLRAMDVETRLTIVD-GDTQLPQVREEFERVLK  404 (520)
Q Consensus       371 ~~l~~~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~  404 (520)
                      ......|.. ..  +|| .+.+++++.+.+...+.
T Consensus       142 ~~~~~~y~~-~~--vi~~n~~~~~~~~~~v~~i~~  173 (184)
T 1y63_A          142 EEARDAYED-DI--VLVRENDTLEQMAATVEEIRE  173 (184)
T ss_dssp             HHHHHHSCG-GG--EEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc-Cc--EEECCCCCHHHHHHHHHHHHH
Confidence            444556752 32  345 35789999776665543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.24  E-value=2e-10  Score=112.20  Aligned_cols=133  Identities=17%  Similarity=0.338  Sum_probs=105.4

Q ss_pred             HHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-
Q psy11031         22 KMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-  100 (520)
Q Consensus        22 ~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-  100 (520)
                      ..++.++.+|.    ++|+.++.+.+...+... ...+|++||||++..|+..+. ....++.+|+|++|.+++.+|+. 
T Consensus        74 ~~i~~~~~~~~----~~~~~~v~~~l~~~l~~~-~~~~~il~g~~~~~~~~~~l~-~~~~~~~vi~L~~~~~~~l~r~~~  147 (246)
T 2bbw_A           74 EMAKQYIEKSL----LVPDHVITRLMMSELENR-RGQHWLLDGFPRTLGQAEALD-KICEVDLVISLNIPFETLKDRLSR  147 (246)
T ss_dssp             HHHHHHHHTTC----CCCHHHHHHHHHHHHHTC-TTSCEEEESCCCSHHHHHHHH-TTCCCCEEEEEECCHHHHHHHHHT
T ss_pred             HHHHHHHHcCC----CCCHHHHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHH-hhcCCCEEEEEECCHHHHHHHHHc
Confidence            33344444555    999999999998877642 467899999999998885544 34578999999999999998873 


Q ss_pred             hC--ccCCc-------------------------c--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHH
Q psy11031        101 YG--AKLGH-------------------------V--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYA  151 (520)
Q Consensus       101 rg--~~~~r-------------------------~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~  151 (520)
                      +.  ..++|                         .  ..+.+.+|+..|.++..++++||.+.++++.|||+++ ++|++
T Consensus       148 r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~  226 (246)
T 2bbw_A          148 RWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWP  226 (246)
T ss_dssp             EEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHH
T ss_pred             CCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHH
Confidence            21  11222                         1  1567899999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHh
Q psy11031        152 DFRTAVLKIL  161 (520)
Q Consensus       152 ~i~~~l~~~~  161 (520)
                      +|.++|...+
T Consensus       227 ~i~~~l~~~~  236 (246)
T 2bbw_A          227 YVYTLFSNKI  236 (246)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhhC
Confidence            9999998755

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.23  E-value=2.1e-11  Score=113.34  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ++|+|+|+|||||||+|+.|++++ |+.+++.+++++   +..  +..    +.+++ ..|+....+...+++...+.  
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~~~---~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~--   70 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVAIE---QRT--GRS----IADIFATDGEQEFRRIEEDVVRAALA--   70 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHH--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchHHH---HHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHh--
Confidence            569999999999999999999997 999999999988   332  211    22333 24544444444444444333  


Q ss_pred             ccCCCcEEEE-eC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cC---CCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031        305 KYTEADGIVI-DG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQ---IDNSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       305 ~~~~~~G~IL-DG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R---~dD~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                          ...||+ +|  +..+......|.     .+.+|+|+||.+.+. |  .|   +....+....++..+.....   .
T Consensus        71 ----~~~~vi~~g~~~v~~~~~~~~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~---~  138 (184)
T 2iyv_A           71 ----DHDGVLSLGGGAVTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRA---P  138 (184)
T ss_dssp             ----HCCSEEECCTTGGGSHHHHHHHT-----TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHH---H
T ss_pred             ----cCCeEEecCCcEEcCHHHHHHHc-----CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHH---H
Confidence                123444 34  333322333332     457999999998643 1  12   21111112334444433323   3


Q ss_pred             HhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGD-TQLPQVREEFERVL  403 (520)
Q Consensus       376 ~y~~~~~l~~IDa~-~~~e~V~~~I~~~I  403 (520)
                      +|..... ++||++ .+++++.+.|...|
T Consensus       139 ~~~~~~~-~~Idt~~~s~ee~~~~I~~~l  166 (184)
T 2iyv_A          139 LYRRVAT-MRVDTNRRNPGAVVRHILSRL  166 (184)
T ss_dssp             HHHHHCS-EEEECSSSCHHHHHHHHHTTS
T ss_pred             HHhccCC-EEEECCCCCHHHHHHHHHHHH
Confidence            4543222 578998 79999888886654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.23  E-value=1.8e-10  Score=108.94  Aligned_cols=163  Identities=12%  Similarity=0.229  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc------CCc---------c--
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA------GDF---------V--  288 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~------G~~---------v--  288 (520)
                      .+|.|+|++||||||+++.|++ + |+.+++.+++.+   .....+......+...+..      |..         .  
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-l-g~~~id~d~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~   77 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-L-GVPLVDADVVAR---EVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH   77 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T-TCCEEEHHHHHH---HTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-C-CCcccchHHHHH---HHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence            5799999999999999999987 6 999999999988   4332332221222221110      100         0  


Q ss_pred             c------hHHHHHHHH----HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCC
Q psy11031        289 N------RDVVLDIVY----AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNS  355 (520)
Q Consensus       289 P------d~lv~~ll~----~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~  355 (520)
                      |      ..++...+.    +.+.  .. .+.++|+|| |.-.+. . +   ....+.+|+|+|+.+.+.+   .|...+
T Consensus        78 ~~~~~~l~~~~~p~v~~~~~~~~~--~~-~~~~vv~~~-~~l~e~-~-~---~~~~d~vi~l~~~~e~~~~Rl~~R~~~~  148 (206)
T 1jjv_A           78 DEDKLWLNNLLHPAIRERMKQKLA--EQ-TAPYTLFVV-PLLIEN-K-L---TALCDRILVVDVSPQTQLARSAQRDNNN  148 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--TC-CSSEEEEEC-TTTTTT-T-C---GGGCSEEEEEECCHHHHHHHHC-----C
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHH--hc-CCCEEEEEe-chhhhc-C-c---HhhCCEEEEEECCHHHHHHHHHHcCCCC
Confidence            0      111122222    2232  11 245789998 432111 1 1   1234679999999986432   343345


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHH----HHHHHHHHHHHHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP----QVREEFERVLKKIID  408 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e----~V~~~I~~~I~~~i~  408 (520)
                      .+.+.+|+..   + .+....|...+  ++||++.+++    ++.++|...+...+.
T Consensus       149 ~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~~~~  199 (206)
T 1jjv_A          149 FEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQFYLQ  199 (206)
T ss_dssp             HHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            6777777664   1 23445555444  5689988999    888888888765443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.22  E-value=8.2e-11  Score=107.36  Aligned_cols=149  Identities=15%  Similarity=0.226  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      +|+|.|+|||||||+|+.|++++ |+.+++++++.+   ...      |..+++++. .|......+..+++ ..+.   
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~~~---~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~---   67 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVDEEVQ---KRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS---   67 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHHHHHH---HHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT---
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-CCCEEECcHHHH---HHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh---
Confidence            69999999999999999999997 999999999988   322      233444432 23322222222222 1222   


Q ss_pred             cCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--c---CCCC--CHHHHHHHHHHHHHHhHHHH
Q psy11031        306 YTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--G---QIDN--SVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       306 ~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~---R~dD--~~e~~~~Rl~~f~~~~~~l~  374 (520)
                        ....|||+ |  .+....+...|..    ++.+|+|+||.+.+. |  .   |+..  ..+.++.++.   +    ..
T Consensus        68 --~~~~~Vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~---~----~~  134 (168)
T 2pt5_A           68 --EKENVVISTGGGLGANEEALNFMKS----RGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFE---E----RR  134 (168)
T ss_dssp             --TSSSEEEECCHHHHTCHHHHHHHHT----TSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHH---H----HH
T ss_pred             --ccCCeEEECCCCEeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHH---H----HH
Confidence              24467775 4  3444445555542    468999999997642 2  2   2221  1222333322   1    12


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .+|.. ..++. |++.+++++.+.|.+.+.
T Consensus       135 ~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~  162 (168)
T 2pt5_A          135 KIYSK-ADIKV-KGEKPPEEVVKEILLSLE  162 (168)
T ss_dssp             HHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred             HHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence            34554 44665 888999999999887764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.21  E-value=2.3e-11  Score=111.48  Aligned_cols=146  Identities=11%  Similarity=0.069  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      ..|+|.|+|||||||+|+.|++++ |+.+++++++++   +..      |..+++++. .|+....++..+++.....  
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~~~~---~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~--   75 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDMIIS---ERV------GLSVREIFEELGEDNFRMFEKNLIDELKT--   75 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT--
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHHHH---HHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh--
Confidence            579999999999999999999997 999999999988   332      222344443 3543333333334433222  


Q ss_pred             ccCCCcEE-EEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--c-----CCCCC-HHHHHHHHHHHHHHhH
Q psy11031        305 KYTEADGI-VID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--G-----QIDNS-VSAFRRRLELFRERTL  371 (520)
Q Consensus       305 ~~~~~~G~-ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~-----R~dD~-~e~~~~Rl~~f~~~~~  371 (520)
                          ...+ |+.   |++.. +.       +..++.+|||+||.+.+. |  .     |.... .+.++    .......
T Consensus        76 ----~~~~~Vi~~g~g~~~~-~~-------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~----~~~~~r~  139 (168)
T 1zuh_A           76 ----LKTPHVISTGGGIVMH-EN-------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAK----ELFEKRQ  139 (168)
T ss_dssp             ----CSSCCEEECCGGGGGC-GG-------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHH----HHHHHHH
T ss_pred             ----cCCCEEEECCCCEech-hH-------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHH----HHHHHHH
Confidence                2234 554   36655 22       233567999999998642 1  2     22222 22222    2222222


Q ss_pred             HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                         .+|.... -++||++.+++++.+.|...|
T Consensus       140 ---~~~~~~a-~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          140 ---ALYEKNA-SFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             ---HHHHHTC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred             ---HHHHHHC-CEEEECCCCHHHHHHHHHHHh
Confidence               3444322 246898889999999887654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.20  E-value=1.5e-11  Score=113.64  Aligned_cols=147  Identities=13%  Similarity=0.062  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      +|+|+|+|||||||+|+.|++++ |+.+++.+++++   ...      |..+.+++. .|.....+....++. .+.   
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~~~~---~~~------g~~~~~~~~~~g~~~~~~~~~~~~~-~l~---   71 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDFLIE---QKF------NQKVSEIFEQKRENFFREQEQKMAD-FFS---   71 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH---HHH------TSCHHHHHHHHCHHHHHHHHHHHHH-HHT---
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccHHHH---HHc------CCCHHHHHHHcCHHHHHHHHHHHHH-HHH---
Confidence            69999999999999999999997 999999999988   321      112222232 343322333333332 222   


Q ss_pred             cCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc--------cCCCCC-HHHHHHHHHHHHHHhHHHHH
Q psy11031        306 YTEADGIVID-GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK--------GQIDNS-VSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       306 ~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r--------~R~dD~-~e~~~~Rl~~f~~~~~~l~~  375 (520)
                        ...++||+ |++.-.. .. |.    ..+.+|||+++.+.+.+        .|+... .+.++    .   .......
T Consensus        72 --~~~~~vi~~g~~~~~~-~~-l~----~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~----~---~~~~r~~  136 (175)
T 1via_A           72 --SCEKACIATGGGFVNV-SN-LE----KAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAK----K---LYNERLS  136 (175)
T ss_dssp             --TCCSEEEECCTTGGGS-TT-GG----GGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHH----H---HHHHHHH
T ss_pred             --ccCCEEEECCCCEehh-hH-Hh----cCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHH----H---HHHHHHH
Confidence              23467777 7543222 11 22    23579999999876432        222222 22222    2   2222234


Q ss_pred             HhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVDGD-TQLPQVREEFERVL  403 (520)
Q Consensus       376 ~y~~~~~l~~IDa~-~~~e~V~~~I~~~I  403 (520)
                      +|.... .++||++ .+++++.+.|...|
T Consensus       137 ~y~~~~-~~~Idt~~~~~eev~~~I~~~l  164 (175)
T 1via_A          137 KYEQKA-NFILNIENKNIDELLSEIKKVI  164 (175)
T ss_dssp             HHHHHC-SEEEECTTCCHHHHHHHHHHHH
T ss_pred             HHHhcC-CEEEECCCCCHHHHHHHHHHHH
Confidence            554322 3679999 79999998887765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.19  E-value=1.9e-10  Score=115.24  Aligned_cols=172  Identities=14%  Similarity=0.100  Sum_probs=101.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch-----
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR-----  290 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd-----  290 (520)
                      +..+.+|+|.|++||||||+|+.|+ ++ |+.+|+++++.+   .....++.....+.+.+.      .|..-..     
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~l-g~~~id~D~~~~---~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~  146 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NL-GAYIIDSDHLGH---RAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSR  146 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HH-TCEEEEHHHHHH---HHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HC-CCcEEehhHHHH---HHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHH
Confidence            4567899999999999999999999 56 999999999988   443333333333222211      1211000     


Q ss_pred             ------------HHH----HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cC
Q psy11031        291 ------------DVV----LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQ  351 (520)
Q Consensus       291 ------------~lv----~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R  351 (520)
                                  .++    ...+..++..........||+||....  +. .+   ...++.+|||+|+.+.+.+   .|
T Consensus       147 vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~--~~-~~---~~~~d~vI~l~a~~ev~~~Rl~~R  220 (281)
T 2f6r_A          147 VFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLL--EA-GW---QSMVHEVWTVVIPETEAVRRIVER  220 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTT--TT-TG---GGGCSEEEEEECCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhh--cc-ch---HHhCCEEEEEcCCHHHHHHHHHHc
Confidence                        011    111122222100112457999996321  11 01   1225679999999986432   23


Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        352 IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       352 ~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      ...+.+.+.+|+...    .+..+++...+  ++||++.+++++.++|...+...+..+
T Consensus       221 ~g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~l~~~~  273 (281)
T 2f6r_A          221 DGLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNLLQKRL  273 (281)
T ss_dssp             HCCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence            233566666666643    22334443333  468999999999999998887655444

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.18  E-value=1.2e-10  Score=115.10  Aligned_cols=156  Identities=16%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh---CCCCeee--ehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD---YPNWTQI--SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY  298 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k---~~g~~~i--s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~  298 (520)
                      .++.|+|+|+|||||||+|+.|+++   + |+.++  +. |.++   .....-.          ..++..........+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~~-D~~~---~~l~~~~----------~~~e~~~~~~~~~~i~   67 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLGS-DLIR---ESFPVWK----------EKYEEFIKKSTYRLID   67 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECT-HHHH---TTSSSCC----------GGGHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEECc-hHHH---HHHhhhh----------HHHHHHHHHHHHHHHH
Confidence            3678999999999999999999987   6 88777  65 5555   2221101          1111111122233344


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC-CCCHHHHHHHHHHHHHHhH
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI-DNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~-dD~~e~~~~Rl~~f~~~~~  371 (520)
                      ..+.     . ..+|+||.+....+...+...   .+.+..+|+|+|+.+.+. |  .|. ....+.+++..+.|.   .
T Consensus        68 ~~l~-----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e---~  138 (260)
T 3a4m_A           68 SALK-----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFD---E  138 (260)
T ss_dssp             HHHT-----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCC---C
T ss_pred             HHhh-----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhc---C
Confidence            4333     2 789999988776666655543   344567999999987642 1  232 223444444333332   1


Q ss_pred             HHHHHhhhCCCEEEEECCC--CHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDT--QLPQVREEFERVLK  404 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~--~~e~V~~~I~~~I~  404 (520)
                      + ...|......++||++.  ++++|++.|...+.
T Consensus       139 ~-~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          139 P-GKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             T-TSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             c-cccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence            1 12232123457899987  78888777766543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.15  E-value=4.8e-10  Score=105.00  Aligned_cols=162  Identities=11%  Similarity=0.094  Sum_probs=87.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc-c
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT-K  305 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~-~  305 (520)
                      +|+|+|+|||||||+|+.|++++ ++.++...          ..+..   .++.++..+...+......++..++... .
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l-~~~~~~e~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   67 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL-GYEIFKEP----------VEENP---YFEQYYKDLKKTVFKMQIYMLTARSKQLKQ   67 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH-CCEEECCC----------GGGCT---THHHHTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEECCCccCHHHHHHHHHHhc-CCcEEccc----------ccccH---HHHHHHhCccccchhHHHHHHHHHHHHHHH
Confidence            69999999999999999999997 88766421          00111   1222221111111111122222222210 1


Q ss_pred             cCCCcEEEEeCCCCCH-HHHH------------------HHH---hhc-------CCCCCEEEecCChhhhh-----ccC
Q psy11031        306 YTEADGIVIDGFPREM-SQLI------------------DFE---NKY-------QIHPPMILIDCSKLVLH-----KGQ  351 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~-~Qae------------------~l~---~~~-------~~p~~VI~Ld~~~~~~~-----r~R  351 (520)
                      .....++|+|+++.+- ..+.                  .+.   ..+       ..++.+|+|+|+.+.+.     |+|
T Consensus        68 ~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r  147 (205)
T 2jaq_A           68 AKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR  147 (205)
T ss_dssp             -----CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC
T ss_pred             hhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            1112359999998752 1110                  111   111       34667999999987642     233


Q ss_pred             CCCCH--HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        352 IDNSV--SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       352 ~dD~~--e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +....  ..+.+++..++.   .+.+.|......++||++.++++|.+.|...+..
T Consensus       148 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~  200 (205)
T 2jaq_A          148 SEELLIGEEYWETLNKNYE---EFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS  200 (205)
T ss_dssp             HHHHHSCHHHHHHHHHHHH---HHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHHHH---HHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            21110  133344443333   3455665334578899999999999999887754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.14  E-value=8.3e-11  Score=114.27  Aligned_cols=174  Identities=13%  Similarity=0.173  Sum_probs=101.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhc-ccccCCc------chHHHH--------------h
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN-IEDDGEG------LNSRIK--------------S  280 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~-~~~~~t~------~g~~i~--------------~  280 (520)
                      ...+.+|.|+|++||||||+++.|++++ |+.+++.|++++.... ....+.+      +...+.              .
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l-g~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~   91 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF-GFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQL   91 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc-CCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccce
Confidence            4456789999999999999999999997 9999999999982100 0112222      111111              2


Q ss_pred             hhhcCCccc----hHHHH-------------HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC
Q psy11031        281 SVSAGDFVN----RDVVL-------------DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS  343 (520)
Q Consensus       281 ~l~~G~~vP----d~lv~-------------~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~  343 (520)
                      ++..|+.++    .+.+.             +.+...+.  ....+.|+|+||+....       ..+...+.+|||+|+
T Consensus        92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~--~~~~~~~~v~~g~~~~~-------~~l~~~d~vi~L~a~  162 (236)
T 1q3t_A           92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQ--EIAQQGGIVMDGRDIGT-------VVLPQAELKIFLVAS  162 (236)
T ss_dssp             EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHH--HHHTTSCEEEECSSCSS-------SSGGGCSEEEEEECC
T ss_pred             EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHH--HhcccCCEEEECCcchh-------hhccCCCEEEEEECC
Confidence            223455332    21222             12222222  22345689999997641       112234679999999


Q ss_pred             hhhhhc-------cCC-CCCHHHHHHHHHH--HHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031        344 KLVLHK-------GQI-DNSVSAFRRRLEL--FRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKI  406 (520)
Q Consensus       344 ~~~~~r-------~R~-dD~~e~~~~Rl~~--f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~  406 (520)
                      .+.+.+       .|. ..+.+.+.+++..  +......+..+|... ..++||++ .+++++.+.|...+...
T Consensus       163 ~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~-d~~vId~~~~s~eev~~~I~~~l~~~  235 (236)
T 1q3t_A          163 VDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAE-DAVYLDTTGLNIQEVVEKIKAEAEKR  235 (236)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCT-TCEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccC-CEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            976421       233 3355555555542  111111111234322 24679998 49999999999887653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.12  E-value=4.8e-10  Score=106.32  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD----  291 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~----  291 (520)
                      .+..|+|+|+|||||||+++.|++.+.+..+.+++...|   +.. .+..-        .+.+...+..|..+...    
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR---~~~-~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTR---NKR-EKETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN   86 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECS---CCC-TTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCC---CCC-CCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence            467899999999999999999999873325667766666   321 11111        12344444444433211    


Q ss_pred             ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC-CCCEEEec-CChhhhh---ccCCCCCHHHHHHH
Q psy11031        292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI-HPPMILID-CSKLVLH---KGQIDNSVSAFRRR  362 (520)
Q Consensus       292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~-p~~VI~Ld-~~~~~~~---r~R~dD~~e~~~~R  362 (520)
                          ...+.+...+.     .+.++|+|+.+....+   +.+.+.. ...+|||+ ++.+.+.   +.|..++.+.+.+|
T Consensus        87 ~~~~~~~~~i~~~l~-----~g~~vi~d~~~~~~~~---l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~r  158 (204)
T 2qor_A           87 NFYGTLKSEYDLAVG-----EGKICLFEMNINGVKQ---LKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKR  158 (204)
T ss_dssp             EEEEEEHHHHHHHHH-----TTCEEEEECCHHHHHH---HHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHH
T ss_pred             CeecCCHHHHHHHHH-----cCCeEEEEECHHHHHH---HHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence                00123333344     4678999997755444   3333321 23689998 8887643   24555678889999


Q ss_pred             HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +...+....+.  +....+ ++ |+.+ ++++++++|.+.|..
T Consensus       159 l~~~~~~~~~~--~~~~~d-~v-i~n~-~~e~~~~~i~~~i~~  196 (204)
T 2qor_A          159 MQELTREMDEA--DKVGFN-YF-IVND-DLARTYAELREYLLG  196 (204)
T ss_dssp             HHHHHHHHHHH--HHHTCS-EE-EECS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--hhccCc-EE-EECc-CHHHHHHHHHHHHHH
Confidence            88776544321  222222 34 4444 899999999888865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.12  E-value=1e-10  Score=111.64  Aligned_cols=160  Identities=9%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCC------CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH-
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN------WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL-  294 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g------~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~-  294 (520)
                      ...+.+|+|+|+|||||||+|+.|++.+ +      +.+++ ++.++   ............-      +    .+.+. 
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l-~~~~g~~~~~~~-~d~~r---~~l~~~~~~~~~~------r----~~~~~~   86 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLD-GDNIR---FGLNKDLGFSEAD------R----NENIRR   86 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCCCEEEEC-HHHHT---TTTTTTCCSSHHH------H----HHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHh-ccccCCcEEEEC-ChHHh---hhhccccCCCHHH------H----HHHHHH
Confidence            3457899999999999999999999876 5      67777 45556   3321110000000      0    01222 


Q ss_pred             --HHHHHHHhccccCCCcEEEEeCCCC----CHHHHHHHHh------hcCCCCCEEEecCChhhhhccCCCCCHHHHHHH
Q psy11031        295 --DIVYAEMKKTKYTEADGIVIDGFPR----EMSQLIDFEN------KYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRR  362 (520)
Q Consensus       295 --~ll~~~l~~~~~~~~~G~ILDGFPr----t~~Qae~l~~------~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~R  362 (520)
                        .++...+.     .+..+|+| |+.    +.++...+..      ..+.|+.+|+|+|+.+.+.++..   .+.+.+.
T Consensus        87 ~~~~~~~~l~-----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~---r~~~~~~  157 (211)
T 1m7g_A           87 IAEVAKLFAD-----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP---KGLYKKA  157 (211)
T ss_dssp             HHHHHHHHHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT---TCHHHHH
T ss_pred             HHHHHHHHHH-----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh---HHHHHHH
Confidence              22223333     35678888 653    2333444443      22345679999999987654321   1122222


Q ss_pred             HHHHHHHhHHHHHHhhh-CCCEEEEECCC-CHHHHHHHHHHHHHH
Q psy11031        363 LELFRERTLPMLRAMDV-ETRLTIVDGDT-QLPQVREEFERVLKK  405 (520)
Q Consensus       363 l~~f~~~~~~l~~~y~~-~~~l~~IDa~~-~~e~V~~~I~~~I~~  405 (520)
                      .+.|......+..+|+. ....++||++. +++++.+.|...|..
T Consensus       158 r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          158 REGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             HHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             HhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            22232222233345542 12247899998 999999999887753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.09  E-value=8.5e-10  Score=104.29  Aligned_cols=161  Identities=13%  Similarity=0.046  Sum_probs=90.9

Q ss_pred             cCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---HHH
Q psy11031        220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---LDI  296 (520)
Q Consensus       220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~~l  296 (520)
                      |....+.+|+|+|++||||||+++.|++.+ |..+++.+++.+   ...         . .....|....+...   ...
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-g~~~i~~d~~~~---~~~---------~-~~~~~g~~~~~~~~~~~~~~   89 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-GLEFAEADAFHS---PEN---------I-ATMQRGIPLTDEDRWPWLRS   89 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH-CCEEEEGGGGSC---HHH---------H-HHHHTTCCCCHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-CCeEEccccccc---HHH---------H-HHHhcCCCCCCcccccHHHH
Confidence            344567899999999999999999999997 999999877643   110         0 00111222221111   112


Q ss_pred             HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCC--CCCHHHHHHHHHHHHHHhH
Q psy11031        297 VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQI--DNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       297 l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~--dD~~e~~~~Rl~~f~~~~~  371 (520)
                      +...+.. ....+..+|+|.-.....+.+.+.+.. .+..+|+|+|+.+.+. |  .|.  ....+.++..+       .
T Consensus        90 ~~~~~~~-~~~~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~-------~  160 (200)
T 4eun_A           90 LAEWMDA-RADAGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQL-------A  160 (200)
T ss_dssp             HHHHHHH-HHHTTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHH-------H
T ss_pred             HHHHHHH-HHhcCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHH-------H
Confidence            2222220 112345788887545555555555433 3456899999987642 1  232  22222332222       2


Q ss_pred             HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      ....+|... ..++||++.+++++.+.|...|.
T Consensus       161 ~~~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          161 TLEALEPDE-SGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             HCCCCCTTS-CEEEEETTSCHHHHHHHHHHHHC
T ss_pred             HhCCCCCCC-CeEEEECCCCHHHHHHHHHHHHH
Confidence            222344332 46789999999999998887663

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.09  E-value=1.8e-10  Score=110.00  Aligned_cols=167  Identities=12%  Similarity=0.138  Sum_probs=96.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhc-ccccCCcchHHHHhh------------------hhcC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN-IEDDGEGLNSRIKSS------------------VSAG  285 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~-~~~~~t~~g~~i~~~------------------l~~G  285 (520)
                      |.+|+|.|++||||||+|+.|++++ |+.+++.+++++.... ....+.  +..+.++                  +..|
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~-g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g   79 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL-SMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN   79 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc-CCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence            5679999999999999999999998 9999999999982100 011222  2222222                  1345


Q ss_pred             CccchH----HHH-------------HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh
Q psy11031        286 DFVNRD----VVL-------------DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH  348 (520)
Q Consensus       286 ~~vPd~----lv~-------------~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~  348 (520)
                      +.+...    .+.             +.+.....  ....+.++|+||-  +..     ...+...+.+|||+|+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--~~~~~~~~vi~g~--~~~-----~~~~~~~~~vi~l~a~~e~~~  150 (219)
T 2h92_A           80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQK--ELAAEKGIVMDGR--DIG-----TVVLPDADLKVYMIASVEERA  150 (219)
T ss_dssp             EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHH--HHHTTCCEEEEES--SCC-----CCCCTTCSEEEEEECCHHHHH
T ss_pred             ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHH--HhccCCcEEEEcC--Ccc-----ceecCCCCEEEEEECCHHHHH
Confidence            433321    111             11111111  1224568999993  210     012334567999999987642


Q ss_pred             -c------cCC-CCCHHHHHHHHHHH--HHHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHH
Q psy11031        349 -K------GQI-DNSVSAFRRRLELF--RERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLK  404 (520)
Q Consensus       349 -r------~R~-dD~~e~~~~Rl~~f--~~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~  404 (520)
                       |      +|. .++.+.+.+++..-  ......+..+|.. ...++||++. +++++.+.|.+.+.
T Consensus       151 ~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          151 ERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence             2      233 23566677766422  1121222234433 2346789885 99999999988764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.09  E-value=6.5e-10  Score=102.87  Aligned_cols=156  Identities=14%  Similarity=0.241  Sum_probs=89.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..+++|+|+|+|||||||+|+.|++++ |+.+++++++++   ... .....+...     .......+.+.+.+...+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~~~---~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   78 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLAR---EEQ-LYDGYDEEY-----DCPILDEDRVVDELDNQMR   78 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHT-CEEEEETTT-----TEEEECHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHHHh---hcc-hhhhhhhhh-----cCccCChHHHHHHHHHHHh
Confidence            356789999999999999999999997 999999999998   321 001111100     1112344555666665555


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHH--HHHHHHhHHHHHHh
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRL--ELFRERTLPMLRAM  377 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl--~~f~~~~~~l~~~y  377 (520)
                        .    .|+|+|+..+..     +..  ..++.+|||+|+.+.+.+   .|.. .......+.  +.+..........|
T Consensus        79 --~----g~~vv~~~~~~~-----~~~--~~~~~vi~L~~~~e~l~~R~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~y  144 (180)
T 3iij_A           79 --E----GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETRGY-NEKKLTDNIQCEIFQVLYEEATASY  144 (180)
T ss_dssp             --H----CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTTC-CHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred             --c----CCEEEEechhhh-----cch--hcCCEEEEEECCHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              1    478888754331     111  115679999999986532   2321 222222221  22222223334455


Q ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        378 DVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       378 ~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .. +.++.++ +.++++|.+.+...+.
T Consensus       145 ~~-~~~i~~~-~~~~~ev~~~v~~i~~  169 (180)
T 3iij_A          145 KE-EIVHQLP-SNKPEELENNVDQILK  169 (180)
T ss_dssp             CG-GGEEEEE-CSSHHHHHHHHHHHHH
T ss_pred             CC-CeEEEcC-CCCHHHHHHHHHHHHH
Confidence            42 3444444 5889999655554443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.09  E-value=3.1e-10  Score=112.06  Aligned_cols=162  Identities=13%  Similarity=0.082  Sum_probs=101.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ..+|+|+|++||||||+++.|++++ |+.+++.+++++   ... .    |..+..++. .|+....++..+++...+. 
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~d~~~~---~~~-~----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~-  117 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL-GYTFFDCDTLIE---QAM-K----GTSVAEIFEHFGESVFREKETEALKKLSL-  117 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEHHHHHH---HHS-T----TSCHHHHHHHHCHHHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc-CCcEEeCcHHHH---HHh-c----CccHHHHHHHhCcHHHHHHHHHHHHHHHh-
Confidence            5679999999999999999999997 999999999998   332 1    223444443 3554444444445544333 


Q ss_pred             cccCCCcEEEEe--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhcc--------CC-------CCCHHHHHHHHHHH
Q psy11031        304 TKYTEADGIVID--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKG--------QI-------DNSVSAFRRRLELF  366 (520)
Q Consensus       304 ~~~~~~~G~ILD--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~--------R~-------dD~~e~~~~Rl~~f  366 (520)
                       .  ...++|.+  |++........|.     ...+|||+++.+.+.++        |+       +|+.+....++...
T Consensus       118 -~--~~~~Via~GgG~v~~~~~~~~l~-----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l  189 (250)
T 3nwj_A          118 -M--YHQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTI  189 (250)
T ss_dssp             -H--CSSEEEECCGGGGGSHHHHHHHT-----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHH
T ss_pred             -h--cCCcEEecCCCeecCHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHH
Confidence             1  12344444  5777777777664     25799999999764321        21       11112233445555


Q ss_pred             HHHhHHHHHHhhhCCCEEEE----------EC-CCCHHHHHHHHHHHHHHHH
Q psy11031        367 RERTLPMLRAMDVETRLTIV----------DG-DTQLPQVREEFERVLKKII  407 (520)
Q Consensus       367 ~~~~~~l~~~y~~~~~l~~I----------Da-~~~~e~V~~~I~~~I~~~i  407 (520)
                      .+...+   +|...+.++.+          |. +.+++++.+.|.+.|...+
T Consensus       190 ~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~  238 (250)
T 3nwj_A          190 WDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL  238 (250)
T ss_dssp             HHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence            555444   46554433322          43 4789999999998887764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.08  E-value=3e-10  Score=107.64  Aligned_cols=170  Identities=12%  Similarity=0.125  Sum_probs=95.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc-C--CccchHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA-G--DFVNRDVVLDIVY  298 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~-G--~~vPd~lv~~ll~  298 (520)
                      ...+.+|.|.|++||||||+|+.|++.+.++.+++.+++++   ....-  ..+   ...+.. .  ..+....+.+.+.
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~---~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~i~   89 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK---PESEI--ETD---KNGFLQYDVLEALNMEKMMSAIS   89 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC---CGGGS--CBC---TTSCBCCSSGGGBCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc---CHhHh--hcc---ccCCChhHHHHHhHHHHHHHHHH
Confidence            34567899999999999999999998754799999999887   22100  000   000000 0  0011122333333


Q ss_pred             HHHhcc----------ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHH-
Q psy11031        299 AEMKKT----------KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLE-  364 (520)
Q Consensus       299 ~~l~~~----------~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~-  364 (520)
                      ..+...          .......||+||++.-.  .   +.....++.+++++|+.+... |  .|..+. +.+..++. 
T Consensus        90 ~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~---~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-e~~~~~~~~  163 (207)
T 2qt1_A           90 CWMESARHSVVSTDQESAEEIPILIIEGFLLFN--Y---KPLDTIWNRSYFLTIPYEECKRRRSTRVYQP-PDSPGYFDG  163 (207)
T ss_dssp             HHHHHHTTSSCCC-----CCCCEEEEECTTCTT--C---GGGTTTCSEEEEEECCHHHHHHHHHHSCCSS-CCCTTHHHH
T ss_pred             HHHhCCCCCCcCCCeeecCCCCEEEEeehHHcC--c---HHHHHhcCeeEEEECCHHHHHHHHHHcCCCc-cchHHHHHH
Confidence            322200          01124689999975331  1   112234677999999987532 1  232111 11112222 


Q ss_pred             HHHHHhHHHHHHhhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        365 LFRERTLPMLRAMDVE-TRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       365 ~f~~~~~~l~~~y~~~-~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .+........+.|... +.++.||++.++++++++|...|..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          164 HVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             THHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             HHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            2222223444556543 5678899999999999999887753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.06  E-value=3.4e-10  Score=111.11  Aligned_cols=171  Identities=14%  Similarity=0.170  Sum_probs=93.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe----------eeehhhHHhhhhcccccCCcchHHHHhhhhcCCcc---
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT----------QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFV---  288 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~----------~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~v---  288 (520)
                      ..++.+|.|.|++||||||+|+.|++++ |+.          +++++++++   ...     .+ .+. ....|..+   
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~~~---~~~-----~~-~~~-~~~~g~~~f~~   87 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSFYR---VLT-----SE-QKA-KALKGQFNFDH   87 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGGBC---CCC-----HH-HHH-HHHTTCSCTTS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCcccc---ccC-----hh-hhh-hhccCCCCCCC
Confidence            4467899999999999999999999997 987          799999987   321     01 111 11122211   


Q ss_pred             ch----HHHHHHHHHHHhcc-------------------ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh
Q psy11031        289 NR----DVVLDIVYAEMKKT-------------------KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL  345 (520)
Q Consensus       289 Pd----~lv~~ll~~~l~~~-------------------~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~  345 (520)
                      |+    +.+.+.|..-....                   .......||+||++.-.+.  .+...   .+.+|||+|+.+
T Consensus        88 ~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~~---~d~vi~l~~~~e  162 (252)
T 1uj2_A           88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRDL---FQMKLFVDTDAD  162 (252)
T ss_dssp             GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHHH---CSEEEEEECCHH
T ss_pred             cchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHHh---cCeeEEEeCCHH
Confidence            22    22334443322100                   0113468999997642111  12222   367999999997


Q ss_pred             hhhc---cCC----CCCHHHHHHHHHHHHHH-hHHHH-HHhhhCCCEE--EEECCCCHHHHHHHHHHHHHHHHH
Q psy11031        346 VLHK---GQI----DNSVSAFRRRLELFRER-TLPML-RAMDVETRLT--IVDGDTQLPQVREEFERVLKKIID  408 (520)
Q Consensus       346 ~~~r---~R~----dD~~e~~~~Rl~~f~~~-~~~l~-~~y~~~~~l~--~IDa~~~~e~V~~~I~~~I~~~i~  408 (520)
                      .+.+   .|.    ..+.+.+.+++...... ....+ .++...+.++  .||++.+++++++.|...+...+.
T Consensus       163 ~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~  236 (252)
T 1uj2_A          163 TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPS  236 (252)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchh
Confidence            6421   121    23566666555432211 11111 1222233222  238888899999998887765443

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.06  E-value=5.3e-09  Score=96.12  Aligned_cols=156  Identities=16%  Similarity=0.109  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVLDIVYAE  300 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~~ll~~~  300 (520)
                      ...+|+|+|++||||||+++.|++.+ |+.+++.+++.+   ..         .+.. ...|..+.+.   .....+...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d~~~~---~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~   72 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDFLHP---RR---------NIEK-MASGEPLNDDDRKPWLQALNDA   72 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGGGCC---HH---------HHHH-HHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCccccc---hH---------HHHH-hhcCcCCCccccccHHHHHHHH
Confidence            35789999999999999999999987 999999877643   10         0000 0011111110   011122222


Q ss_pred             HhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCC-CEEEecCChhhhh-c--cCCC--CCHHHHHHHHHHHHHHhHHH
Q psy11031        301 MKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHP-PMILIDCSKLVLH-K--GQID--NSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       301 l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~-~VI~Ld~~~~~~~-r--~R~d--D~~e~~~~Rl~~f~~~~~~l  373 (520)
                      +.. ....+.+||+| |+++ ..+.+.+.+..  ++ .+|+|+||.+.+. |  .|..  ...+.+...+..|    .+.
T Consensus        73 ~~~-~~~~~~~~vi~~~~~~-~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~----~~~  144 (175)
T 1knq_A           73 AFA-MQRTNKVSLIVCSALK-KHYRDLLREGN--PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETL----QEP  144 (175)
T ss_dssp             HHH-HHHHCSEEEEECCCCS-HHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHC----CCC
T ss_pred             HHH-HHhcCCcEEEEeCchH-HHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhh----hCc
Confidence            220 11124579998 6653 34455555432  34 6999999997642 1  2321  1244343322211    111


Q ss_pred             HHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                        +|.. ...++||++.+++++.++|.+.|.
T Consensus       145 --~~~~-~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          145 --GADE-TDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             --CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence              1432 236789999999999999887663

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.05  E-value=6.5e-10  Score=102.64  Aligned_cols=154  Identities=12%  Similarity=0.094  Sum_probs=81.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh----hhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL----GKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~----gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      ++.+|+|.|+|||||||+|+.|++++ |+.+++.    |+.++   +....+...       +..-+ .-.+.+.+++..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~d~~~~g~~i~---~~~~~g~~~-------~~~~~-~~~~~~~~~i~~   71 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL-PGSFVFEPEEMGQALR---KLTPGFSGD-------PQEHP-MWIPLMLDALQY   71 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS-TTCEECCTHHHHHHHH---HTSTTCCSC-------GGGST-THHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc-CCCEEEchhhhHHHHH---HhCccccch-------hhhhH-HHHHHHHHHHHH
Confidence            46789999999999999999999997 9988832    33444   222111000       00000 000234455555


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCCC--CCHHHHHHHHHHHHHHhH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQID--NSVSAFRRRLELFRERTL  371 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~d--D~~e~~~~Rl~~f~~~~~  371 (520)
                      .+.  .  .+..+|+|+...+....+.+...   .+....+|+|+|+.+.+. |  .|..  ...+    +++.+.+...
T Consensus        72 ~l~--~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~----~~~~~~~~~~  143 (183)
T 2vli_A           72 ASR--E--AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVG----TVEDRLNELR  143 (183)
T ss_dssp             HHH--H--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHH----HHHHHHHHHT
T ss_pred             HHH--h--CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHH----HHHHHHHhhc
Confidence            454  1  24558889876654333222222   222334699999987642 2  2221  2222    3333333333


Q ss_pred             HHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGD-TQLPQVREEFERVLK  404 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~  404 (520)
                      ++ + |   . + +||++ .+++++.+.|.+.|.
T Consensus       144 ~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~  170 (183)
T 2vli_A          144 GE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVG  170 (183)
T ss_dssp             SG-G-G---C-S-EEECTTCCHHHHHHHHHHHHT
T ss_pred             cc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHH
Confidence            33 2 2   2 3 79998 899999998887764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.04  E-value=8.3e-10  Score=104.10  Aligned_cols=160  Identities=13%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCcc----------c
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFV----------N  289 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~v----------P  289 (520)
                      .+|.|+|++||||||+|+.|++ + |+.+++++++++   +....+......+.+.+.      .|...          .
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~   76 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKLIH---SFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKD   76 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHHHH---GGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHHHH---HHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCC
Confidence            3799999999999999999998 7 999999999998   443322222222222211      11110          0


Q ss_pred             -------hHHHHHHH----HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCC
Q psy11031        290 -------RDVVLDIV----YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNS  355 (520)
Q Consensus       290 -------d~lv~~ll----~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~  355 (520)
                             ..+....+    ...+.  .......+|+||--.....   +.   ..++.+|+|+|+.+.+.+   .| ..+
T Consensus        77 ~~~~~~l~~l~~~~v~~~~~~~~~--~~~~~~~vive~~~l~~~~---~~---~~~~~~i~l~~~~e~~~~Rl~~R-~~~  147 (204)
T 2if2_A           77 EEKLRKLEEITHRALYKEIEKITK--NLSEDTLFILEASLLVEKG---TY---KNYDKLIVVYAPYEVCKERAIKR-GMS  147 (204)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHH--HSCTTCCEEEECSCSTTTT---CG---GGSSEEEEECCCHHHHHHHHHHT-CCC
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHH--hccCCCEEEEEccccccCC---ch---hhCCEEEEEECCHHHHHHHHHHc-CCC
Confidence                   11111111    12222  1111267899984211000   11   125679999999976432   34 334


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .+.+..|+....    +...++...+  ++||++.+++++.++|...+..
T Consensus       148 ~~~~~~~~~~~~----~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~  191 (204)
T 2if2_A          148 EEDFERRWKKQM----PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEE  191 (204)
T ss_dssp             HHHHHHHHTTSC----CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC----ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHH
Confidence            556666665432    2334444333  4689999999999988877643

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.02  E-value=3.6e-10  Score=111.51  Aligned_cols=180  Identities=8%  Similarity=0.053  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh-hhHHhhh----------hcccccCCcchHHHHhhh-hcCCccch
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL-GKLLRYF----------ANIEDDGEGLNSRIKSSV-SAGDFVNR  290 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~-gdLlr~~----------~~~~~~~t~~g~~i~~~l-~~G~~vPd  290 (520)
                      .++.+|+|.|++||||||+|+.|++++.++.+++. .+-....          ......++.    +++.+ ..+.....
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~----~~~~~~~~~~~~~~   97 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN----VLQMMYEKPERWSF   97 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCC----HHHHHHHCHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCc----hHHHHHhCchhcch
Confidence            46789999999999999999999998645666632 1111000          000112222    33322 21110000


Q ss_pred             HHHHHHHHHHH-----------hc---cccCCCcEEEEe----------CCCCCHH-------HHHHHHhhc---CCCCC
Q psy11031        291 DVVLDIVYAEM-----------KK---TKYTEADGIVID----------GFPREMS-------QLIDFENKY---QIHPP  336 (520)
Q Consensus       291 ~lv~~ll~~~l-----------~~---~~~~~~~G~ILD----------GFPrt~~-------Qae~l~~~~---~~p~~  336 (520)
                      ..-.-++..+.           ..   .....++.+|.|          |++++..       +...+....   ..|+.
T Consensus        98 ~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~  177 (263)
T 1p5z_B           98 TFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDG  177 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhccCCCCe
Confidence            00011101111           10   000112335666          4556643       333343332   25778


Q ss_pred             EEEecCChhhh-----hccCCCC---CHH---HHHHHHHHHHHH--hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        337 MILIDCSKLVL-----HKGQIDN---SVS---AFRRRLELFRER--TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       337 VI~Ld~~~~~~-----~r~R~dD---~~e---~~~~Rl~~f~~~--~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      +|+|+++.+.+     .|+|..+   ..+   .+..+++.|.++  +.+.+.+|.. +.+++||++.++++|++.|...|
T Consensus       178 vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I~~~l  256 (263)
T 1p5z_B          178 IIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESLVEKV  256 (263)
T ss_dssp             EEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHHHHHH
Confidence            99999998753     2344321   222   222333333221  1222233333 45899999999999999999988


Q ss_pred             HHHH
Q psy11031        404 KKII  407 (520)
Q Consensus       404 ~~~i  407 (520)
                      ...+
T Consensus       257 ~~~l  260 (263)
T 1p5z_B          257 KEFL  260 (263)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7655

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.00  E-value=1.7e-09  Score=99.07  Aligned_cols=153  Identities=14%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      +.+|+|+|++||||||+++.|++.+ ++.+++.+++++   ...  +..++...+.   .|+..-.+.-..++. .+.  
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l-~~~~id~d~~~~---~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~-~l~--   71 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIE---KRT--GADVGWVFDL---EGEEGFRDREEKVIN-ELT--   71 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT-TCEEEEHHHHHH---HHH--TSCHHHHHHH---HHHHHHHHHHHHHHH-HHH--
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh-CCCEEeccHHHH---HHh--CcCHHHHHHH---HhHHHHHHHHHHHHH-HHH--
Confidence            4579999999999999999999997 999999988887   321  1222221111   121111111112222 232  


Q ss_pred             ccCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhcc------CC----CCC-HHHHHHHHHHHHHHh
Q psy11031        305 KYTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKG------QI----DNS-VSAFRRRLELFRERT  370 (520)
Q Consensus       305 ~~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~------R~----dD~-~e~~~~Rl~~f~~~~  370 (520)
                         ...++|+.   |.+......+.|...    +.+++|+|+.+.+.++      |+    ++. .+.++    .+....
T Consensus        72 ---~~~~~v~~~~~~~~~~~~~~~~l~~~----~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~----~~~~~r  140 (173)
T 1kag_A           72 ---EKQGIVLATGGGSVKSRETRNRLSAR----GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLE----ALANER  140 (173)
T ss_dssp             ---TSSSEEEECCTTGGGSHHHHHHHHHH----SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHH----HHHHHH
T ss_pred             ---hCCCeEEECCCeEEecHHHHHHHHhC----CEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHH----HHHHHH
Confidence               23456664   566665555555442    4689999998765321      21    111 33333    222222


Q ss_pred             HHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031        371 LPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLK  404 (520)
Q Consensus       371 ~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~  404 (520)
                      .+   +|.... .++||++ .+++++.+.|...+.
T Consensus       141 ~~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          141 NP---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             HH---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred             HH---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence            23   344322 2568988 799999999887764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.99  E-value=4.7e-09  Score=98.69  Aligned_cols=164  Identities=17%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcc-cccCCc------chHHHH-------------hhhhcC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI-EDDGEG------LNSRIK-------------SSVSAG  285 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~-~~~~t~------~g~~i~-------------~~l~~G  285 (520)
                      ++|+|.|++||||||+|+.|++++ |+.+++.+++.+..... ...+..      +...+.             ..+..|
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~l-g~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAAL-GVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG   81 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc-CCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECC
Confidence            389999999999999999999997 99999999999831100 001211      111111             122344


Q ss_pred             CccchH-----------------HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh
Q psy11031        286 DFVNRD-----------------VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH  348 (520)
Q Consensus       286 ~~vPd~-----------------lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~  348 (520)
                      +.+..+                 .+.+.+...+.  ...  .++|+||.-..       .......+.+|||+|+.+.+.
T Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~--~~~vi~g~~~~-------~~~~~~~d~~i~l~a~~e~~~  150 (208)
T 3ake_A           82 EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLK--EVP--PPFVAEGRDMG-------TAVFPEAAHKFYLTASPEVRA  150 (208)
T ss_dssp             EECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHH--HSC--SCEEEEESSCC-------CCCCTTCSEEEEEECCHHHHH
T ss_pred             eeCchhhChHHHHHHHHHhcccHHHHHHHHHHHH--Hhc--CCEEEEcccee-------EEEecCCcEEEEEECCHHHHH
Confidence            443321                 12222333333  233  68999997433       112233567999999998643


Q ss_pred             c---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHH
Q psy11031        349 K---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLK  404 (520)
Q Consensus       349 r---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~  404 (520)
                      +   .|...+.+.+.+++..-....   ..++......++||++. +++++.+.|.+.+.
T Consensus       151 ~R~~~r~~~~~~~~~~~~~~R~~~~---~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          151 WRRARERPQAYEEVLRDLLRRDERD---KAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HHHHHTSSSCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhhcccCHHHHHHHHHHHHHHH---hhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            2   222233444444444211110   01112223346799996 99999999987763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.95  E-value=3.1e-09  Score=99.56  Aligned_cols=161  Identities=15%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHH---HhhhhcCCccchHHH------
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRI---KSSVSAGDFVNRDVV------  293 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i---~~~l~~G~~vPd~lv------  293 (520)
                      .++.+|+|.|++||||||+|+.|++.  |+.+++.+++++   ... .+.+ ....   ..++..|. +....+      
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~---~~~-~~~~-~~i~~~~~~~~~~g~-i~~~~l~~~~~~   77 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAA---RAR-ENKE-EELKRLFPEAVVGGR-LDRRALARLVFS   77 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHH---HHH-HHTH-HHHHHHCGGGEETTE-ECHHHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHH---Hhc-CChH-HHHHHHHHHHHhCCC-cCHHHHHHHHhC
Confidence            45789999999999999999999985  999999999988   332 1211 1111   11222222 222111      


Q ss_pred             ------------HHHH-HHHHhccccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCH
Q psy11031        294 ------------LDIV-YAEMKKTKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSV  356 (520)
Q Consensus       294 ------------~~ll-~~~l~~~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~  356 (520)
                                  ..++ ...+.. ...+ ...+|+|| |.-.. . .+.   ..++.+|||+|+.+.+.+   .|...+.
T Consensus        78 ~~~~~~~l~~~~~~~i~~~~i~~-~~~~g~~~vi~d~-~~l~~-~-~~~---~~~d~~i~l~~~~e~~~~R~~~R~~~~~  150 (203)
T 1uf9_A           78 DPERLKALEAVVHPEVRRLLMEE-LSRLEAPLVFLEI-PLLFE-K-GWE---GRLHGTLLVAAPLEERVRRVMARSGLSR  150 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH-HHTCCCSEEEEEC-TTTTT-T-TCG---GGSSEEEEECCCHHHHHHHHHTTTCCTT
T ss_pred             CHHHHHHHHHHhChHHHHHHHHH-hhhcCCCEEEEEe-cceec-c-Cch---hhCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence                        1111 122221 1123 46788887 32111 0 011   224679999999876432   3433344


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      +.+..|+...    .+...++...+  ++||++.+++++.+.|...+.
T Consensus       151 ~~~~~~i~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~  192 (203)
T 1uf9_A          151 EEVLARERAQ----MPEEEKRKRAT--WVLENTGSLEDLERALKAVLA  192 (203)
T ss_dssp             HHHHHHHTTS----CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC----CChhHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence            4555555531    12223333333  368999899999888877764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.91  E-value=7.6e-09  Score=101.72  Aligned_cols=174  Identities=17%  Similarity=0.281  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCCcc-----hHHHHhh----h----------
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGEGL-----NSRIKSS----V----------  282 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t~~-----g~~i~~~----l----------  282 (520)
                      ....+|.|.|++||||||+++.|++++ |+.+++.|.++|... .....+...     -..+...    +          
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~L-g~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESL-NWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVI  103 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhc-CCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEE
Confidence            346789999999999999999999997 999999999996210 000111111     0111110    0          


Q ss_pred             hcCCccch-----------------HHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh
Q psy11031        283 SAGDFVNR-----------------DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL  345 (520)
Q Consensus       283 ~~G~~vPd-----------------~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~  345 (520)
                      ..+..+.+                 ..+.+.+.....  ......|+|+||--..  ..     .+...+.+|||+++.+
T Consensus       104 l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~--~~a~~~~~V~~gr~~~--~~-----v~~~~~~~ifl~A~~e  174 (252)
T 4e22_A          104 LEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR--AFREAPGLIADGRDMG--TI-----VFPDAPVKIFLDASSQ  174 (252)
T ss_dssp             ETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH--TTCCSSCEEEEESSCC--CC-----CSTTCSEEEEEECCHH
T ss_pred             ECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHhhCCCEEEEeceec--ee-----ecCCCCEEEEEECCHH
Confidence            01111111                 223344444444  4556778999983111  00     1122456899999998


Q ss_pred             hhhcc--------CCCCCHHHHHHHHHHHH--HHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHHH
Q psy11031        346 VLHKG--------QIDNSVSAFRRRLELFR--ERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKII  407 (520)
Q Consensus       346 ~~~r~--------R~dD~~e~~~~Rl~~f~--~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~i  407 (520)
                      .+.++        +...+.+.+.+++....  .....+ ..|......++||.+. +++++.+.|.+.+...+
T Consensus       175 ~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~-~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~  246 (252)
T 4e22_A          175 ERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSV-APLVPAADALVLDSTSMSIEQVIEQALAYAQRIL  246 (252)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccc-cchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence            75322        22334555444442211  111111 1222212246788776 89999999998887654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.88  E-value=3.2e-10  Score=107.42  Aligned_cols=163  Identities=12%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc-hHHHHhhhhc--CCccchHHHHHHHH--H--
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL-NSRIKSSVSA--GDFVNRDVVLDIVY--A--  299 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~-g~~i~~~l~~--G~~vPd~lv~~ll~--~--  299 (520)
                      +|+|.|++||||||+|++|++.+ +..++++. +++    +...+++. ++.++..+..  |...++.....++.  .  
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l-~~~g~~v~-~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~   75 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF-RAAGRSVA-TLA----FPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH-HEEEEEEE-EEE----SSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEE-EEe----ecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHh
Confidence            68999999999999999999986 65544442 222    11112333 5555555432  22222333322221  1  


Q ss_pred             ----HHhccccCCCcEEEEeCCCCCH-----------------HHHHHHHh---hcCCCCCEEEecCChhhhh-----cc
Q psy11031        300 ----EMKKTKYTEADGIVIDGFPREM-----------------SQLIDFEN---KYQIHPPMILIDCSKLVLH-----KG  350 (520)
Q Consensus       300 ----~l~~~~~~~~~G~ILDGFPrt~-----------------~Qae~l~~---~~~~p~~VI~Ld~~~~~~~-----r~  350 (520)
                          .+.. ....+..+|+|||+.+.                 +++..+..   .+..++.+|+|+++++.+.     |.
T Consensus        76 ~~~~~i~~-~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~  154 (214)
T 1gtv_A           76 GAVHTIQG-LCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA  154 (214)
T ss_dssp             EEHHHHHH-EEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred             hhHHHHHH-HhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence                1221 12234678999998653                 12222221   1124677999999987532     11


Q ss_pred             C-----CCCC---HHHHHHHHH-HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHH
Q psy11031        351 Q-----IDNS---VSAFRRRLE-LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFER  401 (520)
Q Consensus       351 R-----~dD~---~e~~~~Rl~-~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~  401 (520)
                      +     ..+.   ...+.+|+. .|.+    +.+.|. ...+++||++.++++|+++|.+
T Consensus       155 ~~~~~~~~d~~e~~~~~~~~~~~~~~~----~~~~~~-~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          155 QRDPGRARDNYERDAELQQRTGAVYAE----LAAQGW-GGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             HEBBEEEEEEEEEEHHHHHHHHHHHHH----HHHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred             ccccccccccccccHHHHHHHHHHHHH----HHHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence            1     1121   124444443 2222    223332 1347889999999999988754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.88  E-value=2.8e-08  Score=99.75  Aligned_cols=112  Identities=16%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC----CccchHHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG----DFVNRDVVLDIVY  298 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G----~~vPd~lv~~ll~  298 (520)
                      .|..|+|.|+|||||||+|+.|++++. ++.+||. |.+|   ......   ...+..+....    ......+...++.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R---~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~v~  104 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFK---QQHPNF---DELVKLYEKDVVKHVTPYSNRMTEAIIS  104 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHH---TTSTTH---HHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhH---Hhchhh---HHHHHHccchhhhhhhHHHHHHHHHHHH
Confidence            468899999999999999999999853 6788886 5566   322111   11111111100    0111122334444


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhh
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVL  347 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~  347 (520)
                      ..+.     .+..||||+.+++..+...+.+.+.   .+..++++.+|++..
T Consensus       105 ~~l~-----~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~  151 (287)
T 1gvn_B          105 RLSD-----QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS  151 (287)
T ss_dssp             HHHH-----HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred             HHHh-----cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence            4444     3578999999998776655544432   223478899998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.88  E-value=5.3e-09  Score=97.33  Aligned_cols=158  Identities=13%  Similarity=0.162  Sum_probs=84.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVL  294 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~  294 (520)
                      ..+.+|+|+|+|||||||+++.|++.+ +     +.+++ ++.++   .....+..             ..+.+   .+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l-~~~~~~~~~~~-~d~~~---~~~~~~~~-------------~~~~~r~~~~~   72 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLL-QKEGYRVEVLD-GDWAR---TTVSEGAG-------------FTREERLRHLK   72 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEE-HHHHH---TTTTTTCC-------------CCHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEee-HHHHH---HHHhhccC-------------CChhhHHHHHH
Confidence            357889999999999999999999875 3     23444 45556   33221110             11111   111


Q ss_pred             HHH--HHHHhccccCCCcEEEEeCCCCCHH---HHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHH-HHHH
Q psy11031        295 DIV--YAEMKKTKYTEADGIVIDGFPREMS---QLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLE-LFRE  368 (520)
Q Consensus       295 ~ll--~~~l~~~~~~~~~G~ILDGFPrt~~---Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~-~f~~  368 (520)
                      .+.  ...+.    ..+..+|+|++.....   +...+....+.+..+|||+|+.+.+.++-.   .. +..+.. ...+
T Consensus        73 ~~~~~~~~~~----~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~---~~-~~~~~~~~~~~  144 (186)
T 2yvu_A           73 RIAWIARLLA----RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP---KG-LYKKALKGELE  144 (186)
T ss_dssp             HHHHHHHHHH----TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH---HH-HHHHHHTTCCS
T ss_pred             HHHHHHHHHH----hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh---hh-hhhHHhhcchh
Confidence            111  11112    2344567788654433   233333333346679999999987533210   00 111110 0000


Q ss_pred             HhHHHHHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031        369 RTLPMLRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKKI  406 (520)
Q Consensus       369 ~~~~l~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~~  406 (520)
                      ....+.+.|.. ....++||++ .+++++.+.|.+.|...
T Consensus       145 ~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~  184 (186)
T 2yvu_A          145 NFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKAV  184 (186)
T ss_dssp             SCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence            11122334542 1234789998 89999999998888654

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.79  E-value=5.2e-08  Score=92.78  Aligned_cols=164  Identities=11%  Similarity=0.026  Sum_probs=92.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccc--------------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVN--------------  289 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vP--------------  289 (520)
                      .++|.|.|++||||||+++.||+++ |+.+++ +++++   ... ..+-.. ..+..   .|+..+              
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~l-g~~~~D-~~~~~---~~a~~~g~~~-~~~~~---~~e~~~~~~~~~~~~~~~~~   76 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHY-NIPLYS-KELLD---EVAKDGRYSK-EVLER---FDEKPMNFAFIPVPAGGTTI   76 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHT-TCCEEC-HHHHH---HTTCC----------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHh-CcCEEC-HHHHH---HHHHhcCCCH-HHHHH---HhhhchhHHHHHhccccccc
Confidence            4689999999999999999999997 999999 99998   322 111110 11111   111111              


Q ss_pred             --hHHHHHHHHHHHhccccC--CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhcc---CCCCCHHHHHHH
Q psy11031        290 --RDVVLDIVYAEMKKTKYT--EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKG---QIDNSVSAFRRR  362 (520)
Q Consensus       290 --d~lv~~ll~~~l~~~~~~--~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~---R~dD~~e~~~~R  362 (520)
                        .+-+.+...+.+.  ...  ...++||+|-  .-.  -.|...  ....+|||++|.+.+.++   +..-+.+...++
T Consensus        77 ~~~~~~~~~~~~~i~--~la~~~~~~~Vi~Gr--~g~--~vl~~~--~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~  148 (201)
T 3fdi_A           77 SLEQDIAIRQFNFIR--KKANEEKESFVIVGR--CAE--EILSDN--PNMISAFILGDKDTKTKRVMEREGVDEKTALNM  148 (201)
T ss_dssp             ---CHHHHHHHHHHH--HHHHTSCCCEEEEST--THH--HHTTTC--TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHH--HHHhhcCCCEEEEEC--Ccc--hhcCCC--CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHH
Confidence              1122234444444  344  4567999985  111  111110  123589999999875432   112234455555


Q ss_pred             HHHHHHHhHHHHHHhhhC------CCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        363 LELFRERTLPMLRAMDVE------TRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       363 l~~f~~~~~~l~~~y~~~------~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      +..-.+...+..++|...      ..-++||.+ .+++++.+.|...+..
T Consensus       149 i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~  198 (201)
T 3fdi_A          149 MKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS  198 (201)
T ss_dssp             HHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            555444445555544111      122568876 5899999998877653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.77  E-value=2.6e-08  Score=93.48  Aligned_cols=164  Identities=15%  Similarity=0.229  Sum_probs=75.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH---
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD---  291 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~---  291 (520)
                      ..+.+|+|+|++||||||+++.|++.+..-.+++++...+   ... .+...        ...+...+..|..+...   
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTR---QMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYV   79 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECS---CCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccC---CCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEeEC
Confidence            3467899999999999999999998752223334444433   110 00000        11222333333322211   


Q ss_pred             -----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEec--CChhhh-h--ccCCCCCHHHHHH
Q psy11031        292 -----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILID--CSKLVL-H--KGQIDNSVSAFRR  361 (520)
Q Consensus       292 -----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld--~~~~~~-~--r~R~dD~~e~~~~  361 (520)
                           ...+.+...+.     .+..+|+|+.+....+.   ...+  ++.++++.  ++.+.+ .  ..|.+++.+.+.+
T Consensus        80 ~~~~g~~~~~i~~~l~-----~g~~vv~d~~~~~~~~~---~~~~--~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~  149 (207)
T 2j41_A           80 GNYYGTPVQYVKDTMD-----EGHDVFLEIEVEGAKQV---RKKF--PDALFIFLAPPSLEHLRERLVGRGTESDEKIQS  149 (207)
T ss_dssp             TEEEEEEHHHHHHHHH-----TTCEEEEECCGGGHHHH---HHHC--TTSEEEEEECCC---------------------
T ss_pred             CeecCCCHHHHHHHHH-----cCCeEEEEECHHHHHHH---HHhc--CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence                 01123334444     35789999976654443   3333  24333333  443332 2  2455566777888


Q ss_pred             HHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        362 RLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      |+..+....    ++|...+ ++ |+.+ ++++++++|.+.|....
T Consensus       150 rl~~~~~~~----~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          150 RINEARKEV----EMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             ------CGG----GGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----hccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence            888766442    3444433 44 5555 89999999998887644

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.76  E-value=5.8e-08  Score=94.23  Aligned_cols=140  Identities=15%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             cCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH-HHHHHhcC-----C---CCCcEEEe----------CCCCCHHhHH
Q psy11031         13 DFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV-LMLEMKMS-----P---AAKAFLIS----------GYPRNMRDVV   73 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l-l~~~l~~~-----~---~~~G~ILD----------GFPRt~~QA~   73 (520)
                      ..|..+..|..+++++.+|.    .+++....-+ ...+....     +   ..+.+|+|          ||||++.|+.
T Consensus        60 ~~p~~~~~g~~i~~~~~~~~----~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~  135 (229)
T 4eaq_A           60 REPGGVPTGEEIRKIVLEGN----DMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEE  135 (229)
T ss_dssp             CTTTTCHHHHHHHHHTTC-------CCHHHHHHHHHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHH
T ss_pred             cCCCCCchHHHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHH
Confidence            45667788999999999887    5444433222 12233211     1   24568999          9999998873


Q ss_pred             -----HHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCC
Q psy11031         74 -----EYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERN  145 (520)
Q Consensus        74 -----~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~  145 (520)
                           .+......||+||+|++|.+++.+|+ .|+....|.+  ...+.+|+..+....   .+.|.  +.++.|||+++
T Consensus       136 ~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l---~~~~~--~~~~vIDa~~s  210 (229)
T 4eaq_A          136 VRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEI---IHNES--QRFKSVNADQP  210 (229)
T ss_dssp             HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH---TTTCT--TTEEEEETTSC
T ss_pred             HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHH---HHhCC--CCEEEEeCCCC
Confidence                 22334468999999999999999999 4554445654  445667776654433   23343  45899999999


Q ss_pred             hHHHHHHHHHHHHHHh
Q psy11031        146 PVEVYADFRTAVLKIL  161 (520)
Q Consensus       146 ~eeV~~~i~~~l~~~~  161 (520)
                      +++|+++|.+.|...+
T Consensus       211 ~eev~~~I~~~l~~~l  226 (229)
T 4eaq_A          211 LENVVEDTYQTIIKYL  226 (229)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.73  E-value=4.2e-08  Score=94.82  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             cCCCCCEEEecCChhhh-----hccCCCCCHH--HHHHHHHHHHHHhHHHHHHh-hhCCCEEEEECCCCHHHHHHHHHHH
Q psy11031        331 YQIHPPMILIDCSKLVL-----HKGQIDNSVS--AFRRRLELFRERTLPMLRAM-DVETRLTIVDGDTQLPQVREEFERV  402 (520)
Q Consensus       331 ~~~p~~VI~Ld~~~~~~-----~r~R~dD~~e--~~~~Rl~~f~~~~~~l~~~y-~~~~~l~~IDa~~~~e~V~~~I~~~  402 (520)
                      ...|+.+|+|+||++.+     .|+|.++..+  .+.+|+..++....  ..|| .....+++|||++++++|+++|.+.
T Consensus       144 ~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~  221 (230)
T 2vp4_A          144 HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRS  221 (230)
T ss_dssp             CCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHH--TSCCSSCCCEEEEEECCC------------
T ss_pred             cCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHH
Confidence            34577899999999763     2345434321  45666665554431  1222 3345688999999999999999988


Q ss_pred             HHHHHH
Q psy11031        403 LKKIID  408 (520)
Q Consensus       403 I~~~i~  408 (520)
                      +...+.
T Consensus       222 l~~~~~  227 (230)
T 2vp4_A          222 ESSIFD  227 (230)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            876543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.71  E-value=2.3e-08  Score=98.15  Aligned_cols=113  Identities=12%  Similarity=0.140  Sum_probs=65.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC-eeeehhhHHhhhhccccc----CCcchHHHHhhhhcCCccchHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-TQISLGKLLRYFANIEDD----GEGLNSRIKSSVSAGDFVNRDVVLDIV  297 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-~~is~gdLlr~~~~~~~~----~t~~g~~i~~~l~~G~~vPd~lv~~ll  297 (520)
                      ..|.+|+|+|+|||||||+|+.|++++ +. .++..+|.+|   .....    ....|..+.++...   ....++..++
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l-~~~~~~~~~D~~r---~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~  102 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEF-QGNIVIIDGDSFR---SQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLV  102 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHT-TTCCEEECGGGGG---TTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhc-CCCcEEEecHHHH---HhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHH
Confidence            457899999999999999999999997 53 2334456666   32211    01122212222110   0012223333


Q ss_pred             HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC---CCCEEEecCChhhh
Q psy11031        298 YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI---HPPMILIDCSKLVL  347 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~  347 (520)
                      ...+.     .+.+|||||++++..+...+...+..   .-.+++++|+.+.+
T Consensus       103 ~~~~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~  150 (253)
T 2p5t_B          103 TKLSS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS  150 (253)
T ss_dssp             HHHHH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred             HHHHh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHH
Confidence            33222     34589999999988776655544322   22356789887653

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.66  E-value=3.6e-07  Score=87.79  Aligned_cols=165  Identities=9%  Similarity=0.149  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch----------
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR----------  290 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd----------  290 (520)
                      -|-|.|+.||||||+|+.|++ + |+++++++.+.+   +....+++.-..|.+.+.      +|. +.-          
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~---~l~~~~~~~~~~i~~~fG~~~~~~dg~-ldR~~L~~~vF~d   84 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAH---RITAPAGLAMPAIEQTFGPAFVAADGS-LDRARMRALIFSD   84 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHH---HHTSTTCTTHHHHHHHHCGGGBCTTSS-BCHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHH---HHhcCCcHHHHHHHHHhChhhcCCCCC-CcHHHHHHHHhCC
Confidence            489999999999999999987 6 999999999998   555555554455544432      232 111          


Q ss_pred             --------HHHHHHHHHHHhccc-cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHH
Q psy11031        291 --------DVVLDIVYAEMKKTK-YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSA  358 (520)
Q Consensus       291 --------~lv~~ll~~~l~~~~-~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~  358 (520)
                              .++..++..++.+.- .....-+|+|. |-=.+.. .+..   ..+.||+++||++... |  .|...+.+.
T Consensus        85 ~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~~---~~D~vi~V~ap~e~r~~Rl~~Rdg~s~ee  159 (210)
T 4i1u_A           85 EDARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWKA---RCDRVLVVDCPVDTQIARVMQRNGFTREQ  159 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHHH---HCSEEEEEECCHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Cccc---cCCeEEEEECCHHHHHHHHHhcCCCCHHH
Confidence                    222233333332100 11233477886 3221101 1222   2578999999998642 2  454567888


Q ss_pred             HHHHHHHHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHHH
Q psy11031        359 FRRRLELFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKIID  408 (520)
Q Consensus       359 ~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i~  408 (520)
                      +.+|+...    .+..+.++..+  ++||.+ .+.+++.+++...+...+.
T Consensus       160 a~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          160 VEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             HHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            88877632    23344444333  467999 8999999999988876544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.63  E-value=1.1e-07  Score=92.73  Aligned_cols=173  Identities=16%  Similarity=0.171  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCCcch--HHHHhhhh----------------
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGEGLN--SRIKSSVS----------------  283 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t~~g--~~i~~~l~----------------  283 (520)
                      .++.+|+|.|++||||||+|+.|++++ |+.+++.|.++|... .....+....  ..+.+.+.                
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~l-g~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~   85 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARAL-GARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF   85 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence            357899999999999999999999997 999999999988311 0011121111  11111111                


Q ss_pred             -cCCccch-----------------HHHHHHHHHHHhccccCCC-cEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh
Q psy11031        284 -AGDFVNR-----------------DVVLDIVYAEMKKTKYTEA-DGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK  344 (520)
Q Consensus       284 -~G~~vPd-----------------~lv~~ll~~~l~~~~~~~~-~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~  344 (520)
                       .|+.+.+                 ..+.+.|.....  ..... .++|+||=...  .     -.+...+.-|||+++.
T Consensus        86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr--~~a~~~~~~V~~GRd~g--t-----~V~pda~lkifl~A~~  156 (233)
T 3r20_A           86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQR--KLATEGGRVVVEGRDIG--T-----VVLPDADVKIFLTASA  156 (233)
T ss_dssp             ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHH--HHHTSSSCEEEEESSCC--C-----CCCTTCSEEEEEECCH
T ss_pred             ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHH--HHHHhcCcEEEecccce--e-----EEcCCCCEEEEEECCH
Confidence             1222211                 112233322222  22344 78999983111  0     0112224569999999


Q ss_pred             hhhhccC--------CCCCHHHHHHHHHHHHHHhHHHHHHhhh---CCCEEEEECC-CCHHHHHHHHHHHHHHHH
Q psy11031        345 LVLHKGQ--------IDNSVSAFRRRLELFRERTLPMLRAMDV---ETRLTIVDGD-TQLPQVREEFERVLKKII  407 (520)
Q Consensus       345 ~~~~r~R--------~dD~~e~~~~Rl~~f~~~~~~l~~~y~~---~~~l~~IDa~-~~~e~V~~~I~~~I~~~i  407 (520)
                      +.+.++|        ..-+.+.+.+.+...-..-..  .+...   ....+.||.+ .+++++.+.|...+...+
T Consensus       157 e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~--r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~~  229 (233)
T 3r20_A          157 EERARRRNAQNVANGLPDDYATVLADVQRRDHLDST--RPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQA  229 (233)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH--SCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh--ccccccccccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            8754332        233555555555443322111  11111   1112678966 599999999988876544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.62  E-value=4.2e-07  Score=82.00  Aligned_cols=143  Identities=9%  Similarity=0.007  Sum_probs=98.4

Q ss_pred             ccCcccCcHHHHHHHHHHccCCC-----------CCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEVKD-----------FSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK   80 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~~~-----------g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~   80 (520)
                      ++++ ++++|+.++..+..+...           ....+++.+.+++.+.+.. ....+||+||| ++..|+..+.....
T Consensus        24 ~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vi~dg~-~~~~~~~~l~~~~~  100 (179)
T 3lw7_A           24 RGAK-VIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT-SNHDLVVFDGV-RSLAEVEEFKRLLG  100 (179)
T ss_dssp             TTCE-EEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS-CCCSCEEEECC-CCHHHHHHHHHHHC
T ss_pred             CCCc-EEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh-cCCCeEEEeCC-CCHHHHHHHHHHhC
Confidence            3566 888898888776543100           0013456666777777753 45789999999 99999977777666


Q ss_pred             CcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      .++.+|+|++|.+++.+|+. |+........+.+.+|+..+.+  .++..++....  +.||++.+++++.++|.+++..
T Consensus       101 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          101 DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDR  176 (179)
T ss_dssp             SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence            88999999999999999994 4322112346667777744332  23444554442  5678888999999999999987


Q ss_pred             Hh
Q psy11031        160 IL  161 (520)
Q Consensus       160 ~~  161 (520)
                      .+
T Consensus       177 ~l  178 (179)
T 3lw7_A          177 VL  178 (179)
T ss_dssp             HC
T ss_pred             Hh
Confidence            54

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.61  E-value=5e-07  Score=82.77  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      +..|+|.|+|||||||+|+.|++++ +...  ++.+++..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l-~~~~~~~~~D~~~~   41 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL-PEPWLAFGVDSLIE   41 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS-SSCEEEEEHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc-CCCeEEeccchHhh
Confidence            5689999999999999999999996 6554  45666554

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.59  E-value=2e-07  Score=88.26  Aligned_cols=39  Identities=21%  Similarity=0.422  Sum_probs=36.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ....+|.|.|++||||||+|+.|++.+ |+.+++++++.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~   48 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGH   48 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHH
Confidence            345789999999999999999999997 999999999988

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.55  E-value=4.6e-07  Score=87.84  Aligned_cols=73  Identities=14%  Similarity=0.235  Sum_probs=43.6

Q ss_pred             CCCCEEEecCChhhh-----hccCCCCCH--HHHHHHHHHHHHHhH-----HH-HHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031        333 IHPPMILIDCSKLVL-----HKGQIDNSV--SAFRRRLELFRERTL-----PM-LRAMDVETRLTIVDGDTQLPQVREEF  399 (520)
Q Consensus       333 ~p~~VI~Ld~~~~~~-----~r~R~dD~~--e~~~~Rl~~f~~~~~-----~l-~~~y~~~~~l~~IDa~~~~e~V~~~I  399 (520)
                      .|+.+|+|+|+.+.+     .|+|..+..  ..+..++...+....     |+ +++| ....+++|||+.++++|++.+
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~~~i  227 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEVTKQ  227 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCHHHH
Confidence            578899999998753     244544331  233333333222211     10 1123 345789999999999998888


Q ss_pred             HHHHHHH
Q psy11031        400 ERVLKKI  406 (520)
Q Consensus       400 ~~~I~~~  406 (520)
                      ...+...
T Consensus       228 ~~i~~~i  234 (241)
T 2ocp_A          228 EDLMREV  234 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.53  E-value=4.7e-07  Score=87.71  Aligned_cols=171  Identities=10%  Similarity=0.120  Sum_probs=93.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc------chHHHHh-hh---hcC--------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG------LNSRIKS-SV---SAG--------  285 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~------~g~~i~~-~l---~~G--------  285 (520)
                      ...+|.|.|++||||||+++.|++++ |+.+++ ++++++.+  ...+-.      .++.... ++   ..+        
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~l-g~~~~d-~~~~~~~a--~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~   88 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEEL-GIHFYD-DDILKLAS--EKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSK   88 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH-TCEEEC-HHHHHHHH--HCC---------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHc-CCcEEc-HHHHHHHH--HHcCCCHHHHHHHHhhccccHHHHHhcccccccccc
Confidence            35789999999999999999999997 999999 88887321  111111      1111111 00   000        


Q ss_pred             -----CccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC-C-CCEEEecCChhhhhcc---CCCCC
Q psy11031        286 -----DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI-H-PPMILIDCSKLVLHKG---QIDNS  355 (520)
Q Consensus       286 -----~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~-p-~~VI~Ld~~~~~~~r~---R~dD~  355 (520)
                           ....++-+.....+.+.  ......++||+|-=  -..  .|. .... + ..+|||++|.+.+.++   +..-.
T Consensus        89 ~~~~~~~~~~~~~f~~~~~~i~--~la~~~~~Vi~Grg--gg~--vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~  161 (223)
T 3hdt_A           89 PSPNDKLTSPENLFKFQSEVMR--ELAESEPCIFVGRA--AGY--VLD-QDEDIERLIRIFVYTDKVKKVQRVMEVDCID  161 (223)
T ss_dssp             ---------HHHHHHHHHHHHH--HHHHHSCEEEESTT--HHH--HHH-HCTTCCEEEEEEEECCHHHHHHHHHHHHTCC
T ss_pred             cccccccccHHHHHHHHHHHHH--HHHhCCCEEEEeCC--cch--hcc-cccCCCCeEEEEEECCHHHHHHHHHHhcCCC
Confidence                 11112223333334443  23234578898762  111  120 0011 2 3589999999865321   11223


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhh------CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        356 VSAFRRRLELFRERTLPMLRAMDV------ETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       356 ~e~~~~Rl~~f~~~~~~l~~~y~~------~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      .+...+++..-.+...+..++|..      ...-++||.+ .+++++.+.|...+..
T Consensus       162 ~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~  218 (223)
T 3hdt_A          162 EERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL  218 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            455566666655565666665421      1122568876 5899999998887753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.51  E-value=9.7e-07  Score=82.59  Aligned_cols=161  Identities=16%  Similarity=0.219  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch--------HHHHhhhhcCCccch-----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN--------SRIKSSVSAGDFVNR-----  290 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g--------~~i~~~l~~G~~vPd-----  290 (520)
                      .+.+|.|+||+||||||+++.|+..+ .-.+++...+.+   ... .+...+        .........+.....     
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~-~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL-AEIKISISHTTR---PKR-PGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYE   80 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS-SSEEECCCEECS---CCC-TTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC-CCeEEeceeccC---CCc-hhHhcCceEEeccHHHHHHHHhcCcEEeeeeeec
Confidence            45789999999999999999999886 455555544433   111 010000        111111111110000     


Q ss_pred             ---HHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecC-Chhhhh---ccCCCCCHHHHHHHH
Q psy11031        291 ---DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDC-SKLVLH---KGQIDNSVSAFRRRL  363 (520)
Q Consensus       291 ---~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~-~~~~~~---r~R~dD~~e~~~~Rl  363 (520)
                         ....+.+...+.     .+..+|+|+.+....++.   ..... ..+|++.. +.+.+.   ..|..++.+.+++|+
T Consensus        81 ~~~~~~~~~i~~~l~-----~g~~vi~d~~~~~~~~~~---~~~~~-~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl  151 (205)
T 3tr0_A           81 RHYGTEKDWVLRQLK-----AGRDVLLEIDWQGARQIR---ELFPP-ALSIFILPPSIEALRERLIKRRQDDTAIIEQRL  151 (205)
T ss_dssp             EEEEEEHHHHHHHHH-----TTCEEEEECCHHHHHHHH---HHCTT-CEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHH
T ss_pred             ccccchHHHHHHHHH-----cCCeEEEEECHHHHHHHH---HhCCC-cEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHH
Confidence               000112333344     356789999766655443   33332 34555554 454432   245556677788888


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ..+...    .+++...+ ++ |+.+ +.+++++++...|..
T Consensus       152 ~~~~~~----~~~~~~~d-~v-i~n~-~~~~~~~~l~~~i~~  186 (205)
T 3tr0_A          152 ALAREE----MAHYKEFD-YL-VVND-NFDQAVQNLIHIISA  186 (205)
T ss_dssp             HHHHHH----HTTGGGCS-EE-EECS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHH----HhcccCCC-EE-EECC-CHHHHHHHHHHHHHH
Confidence            876433    34454433 34 3434 899999999888865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.51  E-value=3.2e-07  Score=96.80  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ...|.+|+|+|+|||||||+|+.|++.+ |+.+|+.+++ +   .       .                ..+...+...+
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-~~~~i~~D~~-~---~-------~----------------~~~~~~~~~~l  306 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVNRDTL-G---S-------W----------------QRCVSSCQAAL  306 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG-TCEECCGGGS-C---S-------H----------------HHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc-CcEEEccchH-H---H-------H----------------HHHHHHHHHHH
Confidence            4567899999999999999999999997 9999998664 2   0       0                11222333444


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhh
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVL  347 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~  347 (520)
                      .     .+..+|||+...+..+...+....   +.+..+|+|+|+.+.+
T Consensus       307 ~-----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l  350 (416)
T 3zvl_A          307 R-----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA  350 (416)
T ss_dssp             H-----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH
T ss_pred             h-----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHH
Confidence            4     456899999988887766655432   3344689999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.51  E-value=1.3e-06  Score=83.01  Aligned_cols=165  Identities=13%  Similarity=0.191  Sum_probs=86.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc---cCCc----chHHHHhhhhcCCccchH----
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED---DGEG----LNSRIKSSVSAGDFVNRD----  291 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~---~~t~----~g~~i~~~l~~G~~vPd~----  291 (520)
                      ..+.+|+|+||+||||||+++.|++.+..-...+.....|   ....   .+..    ........+..+..+-..    
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr---~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~   82 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTR---LPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVG   82 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESS---CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccc---cCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEcc
Confidence            4577899999999999999999999873213333322222   1100   0100    011222222222211100    


Q ss_pred             ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC-hhhhh---ccCCCCCHHHHHHHH
Q psy11031        292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS-KLVLH---KGQIDNSVSAFRRRL  363 (520)
Q Consensus       292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~-~~~~~---r~R~dD~~e~~~~Rl  363 (520)
                          .-...+...+.     .++.+|+|+.+..   +..+.+.+.. ..+||+..+ .+.+.   +.|..++.+.+++|+
T Consensus        83 ~~yg~~~~~i~~~l~-----~g~~vild~~~~g---~~~~~~~~~~-~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl  153 (208)
T 3tau_A           83 NYYGTPLEYVEEKLA-----AGVDIFLEIEVQG---AMQVRKAMPE-GIFIFLTPPDLSELKNRIIGRGTESMEVVEERM  153 (208)
T ss_dssp             EEEEEEHHHHHHHHH-----TTCCEEEECCHHH---HHHHHHHCTT-SEEEEEECTTTTTSSCC-------CCHHHHHHH
T ss_pred             ccCCCcHHHHHHHHH-----cCCeEEEEeeHHH---HHHHHHhCCC-eEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence                00122333344     4678999996444   4444444432 346666654 44332   245556778899999


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      +......    .++..-+ ++.+|.  +.++.+++|.+.|...
T Consensus       154 ~~~~~e~----~~~~~~d-~vivN~--~~~~~~~~l~~~i~~~  189 (208)
T 3tau_A          154 ETAKKEI----EMMASYD-YAVVND--VVANAVQKIKGIVETE  189 (208)
T ss_dssp             HHHHHHH----HHGGGSS-EEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HhhccCC-EEEECc--CHHHHHHHHHHHHHHH
Confidence            8766432    3333222 444543  6999999998888663

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.45  E-value=7e-07  Score=82.28  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeeh-hhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISL-GKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~-gdLlr  262 (520)
                      .+.+|+|+|++||||||+++.|++.+  .|+..+.+ ++.++
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~   45 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR   45 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence            46789999999999999999999863  17666654 35565

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.43  E-value=7.4e-07  Score=97.27  Aligned_cols=164  Identities=15%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC-----eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-----TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDI  296 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-----~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~l  296 (520)
                      ...+.+|+++|++||||||+|+.|++++ +.     .+++ +|.++   +....+......-+..     .+  +.+..+
T Consensus       369 ~~~~~~I~l~G~~GsGKSTia~~La~~L-~~~G~~~~~ld-~D~ir---~~l~~~~~f~~~er~~-----~l--~~i~~~  436 (546)
T 2gks_A          369 HKQGFCVWLTGLPCAGKSTIAEILATML-QARGRKVTLLD-GDVVR---THLSRGLGFSKEDRIT-----NI--LRVGFV  436 (546)
T ss_dssp             GGCCEEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEC-HHHHH---HHTCTTCCSSHHHHHH-----HH--HHHHHH
T ss_pred             cccceEEEccCCCCCCHHHHHHHHHHHh-hhcCCeEEEEC-chHhh---hhhcccccccHHHHHH-----HH--HHHHHH
Confidence            3457889999999999999999999986 53     4555 46667   3332211111100000     00  111222


Q ss_pred             HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecCChhhhhccCCCCCH-HHHHHHHHHHHHHhHHHH
Q psy11031        297 VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDCSKLVLHKGQIDNSV-SAFRRRLELFRERTLPML  374 (520)
Q Consensus       297 l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~~~~~~~r~R~dD~~-e~~~~Rl~~f~~~~~~l~  374 (520)
                      +...+.     .+.++|+|+..-.......+.+.+..++ .+|+|+|+.+.+.++-..... .....++..+.....   
T Consensus       437 ~~~~l~-----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~---  508 (546)
T 2gks_A          437 ASEIVK-----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDD---  508 (546)
T ss_dssp             HHHHHH-----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTB---
T ss_pred             HHHHHh-----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhh---
Confidence            222222     4678999973322233334444444445 689999998865322111100 000011111110000   


Q ss_pred             HHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      .|+.....-++||++ .+++++.++|...|..
T Consensus       509 ~~e~~~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          509 PYEPPVAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             CCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            122111223679996 8999999999887753

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.37  E-value=2.6e-07  Score=100.26  Aligned_cols=141  Identities=18%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCe-----eeehhhHHhhhhcccccCCcchHHHHhhhhc-CC---ccchHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT-----QISLGKLLRYFANIEDDGEGLNSRIKSSVSA-GD---FVNRDVV  293 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~-----~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~-G~---~vPd~lv  293 (520)
                      ..+.+|+|+|.|||||||+|++|++.+ ++.     +++.+++.+   +... ...    +.+++.. ++   .+...++
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L-~~~~~d~~v~s~D~~r~---~~~~-~~~----~~~~f~~~~~~~~~~re~~~  103 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYL-NWIGVPTKVFNVGEYRR---EAVK-QYS----SYNFFRPDNEEAMKVRKQCA  103 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEHHHHHH---HHHS-CCC----CGGGGCTTCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCCCeEEecccHHHH---Hhcc-CCc----cccccCcccHHHHHHHHHHH
Confidence            456889999999999999999999875 543     467788665   2221 111    1122221 11   1112333


Q ss_pred             HHHHHHHHhcccc--CCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CE--EEecCCh-hhhh-----c--cCCC----CCH
Q psy11031        294 LDIVYAEMKKTKY--TEADGIVIDGFPREMSQLIDFENKYQIHP-PM--ILIDCSK-LVLH-----K--GQID----NSV  356 (520)
Q Consensus       294 ~~ll~~~l~~~~~--~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~V--I~Ld~~~-~~~~-----r--~R~d----D~~  356 (520)
                      ...+.....  ..  ..+..+|+|+...+..+.+.+.+.+.... .+  |.+.|++ +++.     +  .|++    +.+
T Consensus       104 ~~~l~~~~~--~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e  181 (520)
T 2axn_A          104 LAALRDVKS--YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSA  181 (520)
T ss_dssp             HHHHHHHHH--HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHH
T ss_pred             HHHHHHHHH--HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHH
Confidence            333322211  11  35678999999988877766654332112 24  4455663 3321     1  2222    222


Q ss_pred             ---HHHHHHHHHHHHHhHHHH
Q psy11031        357 ---SAFRRRLELFRERTLPML  374 (520)
Q Consensus       357 ---e~~~~Rl~~f~~~~~~l~  374 (520)
                         +.+.+|+..|.....++.
T Consensus       182 ~~~~~~~~Ri~~y~~~Yepi~  202 (520)
T 2axn_A          182 EAMDDFMKRISCYEASYQPLD  202 (520)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHhhhhhhcccC
Confidence               345677888877766654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.36  E-value=4e-06  Score=78.96  Aligned_cols=160  Identities=17%  Similarity=0.220  Sum_probs=93.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchHH-------
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRDV-------  292 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~l-------  292 (520)
                      |+|.||+||||+|++++|.+++++..++++..--|   .- ..+..-        -+.....+.+|..+--..       
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR---~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YG   79 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR---TP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS---CC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc---CC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceee
Confidence            88999999999999999998876556677765555   21 122211        235555566665433210       


Q ss_pred             -HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh---ccCCCCCHHHHHHHHHHHH
Q psy11031        293 -VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH---KGQIDNSVSAFRRRLELFR  367 (520)
Q Consensus       293 -v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~~Rl~~f~  367 (520)
                       -.+-+...+.     .++.+|+|.=+   .=+..+.+.......+||+..|. +.+.   ++|..++.+.+++|+....
T Consensus        80 t~~~~v~~~l~-----~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~  151 (186)
T 1ex7_A           80 STVASVKQVSK-----SGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ  151 (186)
T ss_dssp             EEHHHHHHHHH-----HTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             eecceeeehhh-----CCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence             1222333344     36689999864   44444444333234456665543 3332   3567788999999998766


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .....   .+...-..+.||  .+.++-+++|.+.|.
T Consensus       152 ~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~  183 (186)
T 1ex7_A          152 AELAY---AETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             HHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred             HHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence            44321   111111234444  478888888877663

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.33  E-value=3.4e-06  Score=79.35  Aligned_cols=160  Identities=12%  Similarity=0.024  Sum_probs=83.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCe--eeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---H
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWT--QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---L  294 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~--~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~  294 (520)
                      ...+.+|+|+|++||||||+++.|+..+.  |..  +++.+++ +   .....+..             ..+.+..   .
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~-~---~~~~~~~~-------------~~~~~~~~~~~   84 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV-R---HGLNRDLS-------------FKAEDRAENIR   84 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-T---TTTTTTCC-------------SSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh-h---hHhhcccC-------------cChHHHHHHHH
Confidence            45678999999999999999999998751  444  6665444 3   22211110             1111111   1


Q ss_pred             HH--HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhH
Q psy11031        295 DI--VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       295 ~l--l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      .+  +...+.    ..+..+|.++.-......+.+.+.+.... .+|||+|+.+.+.+++......  +.|-..+.. ..
T Consensus        85 ~~~~~~~~~~----~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~--~~r~~~~~~-~~  157 (200)
T 3uie_A           85 RVGEVAKLFA----DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYK--LARAGKIKG-FT  157 (200)
T ss_dssp             HHHHHHHHHH----HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHH--HHHTTSSCS-CB
T ss_pred             HHHHHHHHHH----hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHH--HHhcCCCCC-CC
Confidence            11  111122    23456666654333444555555444322 3599999998765443222000  011000000 01


Q ss_pred             HHHHHhhhC-CCEEEEECC--CCHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVE-TRLTIVDGD--TQLPQVREEFERVLKK  405 (520)
Q Consensus       372 ~l~~~y~~~-~~l~~IDa~--~~~e~V~~~I~~~I~~  405 (520)
                      .+...|... .--++||.+  .+++++.+.|.+.|..
T Consensus       158 ~~~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~  194 (200)
T 3uie_A          158 GIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN  194 (200)
T ss_dssp             TTTBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            111234321 223578977  4999999999888754

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.28  E-value=2.4e-06  Score=94.37  Aligned_cols=160  Identities=11%  Similarity=0.126  Sum_probs=83.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeeh-hhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---HHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISL-GKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---LDIV  297 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~-gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~~ll  297 (520)
                      ++.+|+|+|.|||||||+|+.|++++.  |+..+.+ ++.+|   ............-      +    .+.+   .+++
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR---~~L~~~~~fs~~d------r----ee~~r~i~eva  117 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR---QGLNKNLGFSPED------R----EENVRRIAEVA  117 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT---TTTTTTCCSSHHH------H----HHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh---hccCccccCChhh------h----HHHHHHHHHHH
Confidence            578999999999999999999998731  7776665 47777   4332111111000      0    0111   2222


Q ss_pred             HHHHhccccCCCcEEEEeCCCC----CHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        298 YAEMKKTKYTEADGIVIDGFPR----EMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       298 ~~~l~~~~~~~~~G~ILDGFPr----t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      ...+.     .+..+|.| |-.    ..+++..+....+.+..+|||+|+.+.+.++....  -.-+.|...+. ....+
T Consensus       118 ~~~l~-----~G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~--ly~~aR~~~~~-~~~~~  188 (630)
T 1x6v_B          118 KLFAD-----AGLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG--LYKKARAGEIK-GFTGI  188 (630)
T ss_dssp             HHHHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTS--HHHHHTTC-----CBTT
T ss_pred             HHHHh-----CCCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccc--cchhhhhhhHH-HHHHh
Confidence            22222     23444554 432    23444444433344567999999998754321110  00001110000 11122


Q ss_pred             HHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        374 LRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       374 ~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      ...|.. ...-++||++ .+++++.+.|.+.|..
T Consensus       189 ~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~  222 (630)
T 1x6v_B          189 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE  222 (630)
T ss_dssp             TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence            234531 1112678987 5999999999888864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.22  E-value=2.5e-05  Score=71.94  Aligned_cols=130  Identities=11%  Similarity=0.155  Sum_probs=86.3

Q ss_pred             cccCcHHHHHHHHHHccCCCCCCCCHHHHH-----------HHHHHHHhcCCCCCcEEEe----------CCCCCHH--h
Q psy11031         15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVT-----------EVLMLEMKMSPAAKAFLIS----------GYPRNMR--D   71 (520)
Q Consensus        15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~-----------~ll~~~l~~~~~~~G~ILD----------GFPRt~~--Q   71 (520)
                      |.+...|..++.++.+|.    +.|+.+..           +++...+.   ....+|+|          |||++.+  +
T Consensus        37 ~~~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~~~l~~~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~  109 (195)
T 2pbr_A           37 PGGTKVGEVLREILLTEE----LDERTELLLFEASRSKLIEEKIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEF  109 (195)
T ss_dssp             SCSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHH
T ss_pred             CCCCchHHHHHHHHcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHH
Confidence            445567889999988776    88885542           12222222   23456677          9999765  4


Q ss_pred             HHHH---HHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCCCChH
Q psy11031         72 VVEY---SDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGERNPV  147 (520)
Q Consensus        72 A~~~---~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~e  147 (520)
                      +..+   ......||++|+|+||.+++.+|+.++   +|.+.+.+.+|+ ..|.+..    ++|   +.++.||++++++
T Consensus       110 ~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r---~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~  179 (195)
T 2pbr_A          110 IKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK---NRFENKEFLEKVRKGFLELA----KEE---ENVVVIDASGEEE  179 (195)
T ss_dssp             HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT---TCCCCHHHHHHHHHHHHHHH----HHS---TTEEEEETTSCHH
T ss_pred             HHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc---CccchHHHHHHHHHHHHHHH----hhC---CCEEEEECCCCHH
Confidence            3322   233347999999999999999999531   333333345555 4565532    344   3578999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11031        148 EVYADFRTAVLKIL  161 (520)
Q Consensus       148 eV~~~i~~~l~~~~  161 (520)
                      +++++|.+.+...+
T Consensus       180 ~~~~~i~~~l~~~l  193 (195)
T 2pbr_A          180 EVFKEILRALSGVL  193 (195)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.16  E-value=3.1e-05  Score=73.78  Aligned_cols=137  Identities=14%  Similarity=0.110  Sum_probs=82.7

Q ss_pred             cCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH------------HHHHHhcCCCCCcEEEe----------CCCCCHH
Q psy11031         13 DFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV------------LMLEMKMSPAAKAFLIS----------GYPRNMR   70 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l------------l~~~l~~~~~~~G~ILD----------GFPRt~~   70 (520)
                      ..|..+..|..+++++.++.    .++.....-|            +...++   ..+-+|.|          |+.|...
T Consensus        36 ~eP~~t~~g~~ir~~l~~~~----~~~~~~~~lLf~a~R~~~~~~~i~p~l~---~g~~Vi~DRy~~S~~ayq~~~~~~~  108 (205)
T 4hlc_A           36 REPGGVPTGEEIRKIVLEGN----DMDIRTEAMLFAASRREHLVLKVIPALK---EGKVVLCDRYIDSSLAYQGYARGIG  108 (205)
T ss_dssp             ESSTTCHHHHHHHHHHHSSC----CCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTSSC
T ss_pred             eCCCCChHHHHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEecCcccchHHHHhccccch
Confidence            35778889999999999887    6665543322            122222   12223445          5566544


Q ss_pred             hH-----HHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchH--HHHHHHH-HHHhccchHHHHhhhCCcEEEEe
Q psy11031         71 DV-----VEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILS--LARMELA-NFYQNVTPVTDFFDQRGMLIAVN  141 (520)
Q Consensus        71 QA-----~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e--~i~~Rl~-~Y~~~t~pvi~~Y~~~~~l~~Id  141 (520)
                      ..     ..+......||++|+|++|.+++.+|+ .|+....|.+.+  ...+|+. .|.+    +.+.|.  +.++.||
T Consensus       109 ~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~v~~~Y~~----l~~~~~--~~~~~ID  182 (205)
T 4hlc_A          109 VEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQE----IIHNES--QRFKSVN  182 (205)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH----HHHSCC--TTEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHHHHHHHHHHH----HHHhCC--CCEEEEE
Confidence            33     112223458999999999999999999 455443454322  2233332 2322    222222  3489999


Q ss_pred             CCCChHHHHHHHHHHHHHHhc
Q psy11031        142 GERNPVEVYADFRTAVLKILN  162 (520)
Q Consensus       142 a~~~~eeV~~~i~~~l~~~~~  162 (520)
                      |++++++|+++|.+.|...+.
T Consensus       183 a~~~~e~V~~~i~~~i~~~L~  203 (205)
T 4hlc_A          183 ADQPLENVVEDTYQTIIKYLE  203 (205)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999988763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.09  E-value=6e-06  Score=90.61  Aligned_cols=163  Identities=9%  Similarity=0.032  Sum_probs=81.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCC------CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN------WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD  295 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g------~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~  295 (520)
                      ...+.+|+|.|.|||||||+|+.|++++ +      +.+++ ++.+|   .....+......-+.     +.  -..+..
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L-~~~G~~~~~~lD-~D~ir---~~l~~~~~f~~~er~-----~~--i~ri~~  460 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTL-NQQGGRSVSLLL-GDTVR---HELSSELGFTREDRH-----TN--IQRIAF  460 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCSSCEEEEE-HHHHH---HHTCTTCCCSHHHHH-----HH--HHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHh-cccCCceEEEEC-cHHHH---HHhccccCCChhHHH-----HH--HHHHHH
Confidence            4567899999999999999999999985 5      24455 46667   322111111000000     00  001122


Q ss_pred             HHHHHHhccccCCCcEEEEeCC---CCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031        296 IVYAEMKKTKYTEADGIVIDGF---PREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       296 ll~~~l~~~~~~~~~G~ILDGF---Prt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~  372 (520)
                      ++...+.     .+..+|+|.+   +...+++..+....+ +..+|||+|+.+.+.+++......  +.|..... ....
T Consensus       461 v~~~~~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~~r~l~~--~~~~~~i~-~~~~  531 (573)
T 1m8p_A          461 VATELTR-----AGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRGIYA--AARRGEIK-GFTG  531 (573)
T ss_dssp             HHHHHHH-----TTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHCSSCHHH--HHHTTSSS-SCBT
T ss_pred             HHHHHHh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHhcccchh--hhhHHHHH-HHHh
Confidence            3333222     3445666632   222334433332211 236899999998765443221100  01100000 0000


Q ss_pred             HHH-HhhhCCCEEEEECCC-CHHHHHHHHHHHHHH
Q psy11031        373 MLR-AMDVETRLTIVDGDT-QLPQVREEFERVLKK  405 (520)
Q Consensus       373 l~~-~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~  405 (520)
                      ..+ ||.....-++||++. +++++.+.|...|..
T Consensus       532 ~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          532 VDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             TTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            111 222112236789885 999999998887753

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.05  E-value=3.2e-05  Score=73.68  Aligned_cols=157  Identities=11%  Similarity=0.199  Sum_probs=87.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCC---CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc---hHHH---H
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN---WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN---RDVV---L  294 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g---~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP---d~lv---~  294 (520)
                      ...+|+|.|.|||||+|+|+.|.+.+ |   +..+++++.+++... .+.+-.....    +..+.+-.   ..+.   .
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~-g~~~~~vv~msD~iK~~~a-~~~gl~~~~~----l~~~~ykE~~R~~m~~~g~   83 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRL-GADVCAVLRLSGPLKEQYA-QEHGLNFQRL----LDTSTYKEAFRKDMIRWGE   83 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHH-CTTTEEEECTHHHHHHHHH-HTTTCCCC-----------CCSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHc-CCCCceEEEccHHHHHHHH-HHcCCCchhh----cchhhhHHHHHHHHHHHHH
Confidence            45789999999999999999998866 5   678999999993111 1111111111    11111000   0000   0


Q ss_pred             HHH-------HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-cc----C-CCCCHHHHHH
Q psy11031        295 DIV-------YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-KG----Q-IDNSVSAFRR  361 (520)
Q Consensus       295 ~ll-------~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r~----R-~dD~~e~~~~  361 (520)
                      ++.       .....  .......|||||- |...+++.|.+.++..-.+|.+.++++.+. |+    + .||.+ .   
T Consensus        84 ~~R~~d~~~~~~~~~--~~~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e-s---  156 (202)
T 3ch4_B           84 EKRQADPGFFCRKIV--EGISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE-S---  156 (202)
T ss_dssp             HHHHHCTTTTHHHHS--BTCCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH-H---
T ss_pred             HHHhcCchHHHHHHH--HhcCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc-c---
Confidence            000       11111  1122357999998 889999999987762233678888887642 22    2 22221 1   


Q ss_pred             HHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        362 RLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                              -..+ ..|. ..-+ +|+.+.+.+++.+.+...|.
T Consensus       157 --------E~gL-~~~~-~~D~-vI~Ndgt~eel~~~v~~ll~  188 (202)
T 3ch4_B          157 --------ECGL-DNFG-DFDW-VIENHGVEQRLEEQLENLIE  188 (202)
T ss_dssp             --------HHTT-TTCC-CCSE-EEEECSCHHHHHHHHHHHHH
T ss_pred             --------ccCC-CCCC-cCCE-EEEeCCCHHHHHHHHHHHHH
Confidence                    1122 2221 2223 56777798888777776553

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.02  E-value=2.2e-05  Score=73.40  Aligned_cols=131  Identities=11%  Similarity=0.056  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHccCCCCCC--CCHHHHHHHH--HHHH-------hc-CCCCCcEEEeCCCCCHH--h---------HHHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSF--LSSKTVTEVL--MLEM-------KM-SPAAKAFLISGYPRNMR--D---------VVEYS   76 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~l--VPdelv~~ll--~~~l-------~~-~~~~~G~ILDGFPRt~~--Q---------A~~~~   76 (520)
                      .|..++.++..+.    .  .++.....++  ..+.       .. ......+|+||||++..  |         +..+.
T Consensus        41 ~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~  116 (213)
T 2plr_A           41 SSDWIHDIIKEAK----KKDLLTPLTFSLIHATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLY  116 (213)
T ss_dssp             CCCHHHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHT
T ss_pred             cHHHHHHHHhccc----cccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHH
Confidence            5777888887664    2  3444333322  1111       10 01345789999998742  2         22222


Q ss_pred             HhcCCcCEEEEEEcCHHHHHHHhh-hCccCCc-------------cc-hHHHHHHHHHHHhccchHHHHhhhCCcEEEEe
Q psy11031         77 DKIKTINGVILIAWRQSLLERQID-YGAKLGH-------------VI-LSLARMELANFYQNVTPVTDFFDQRGMLIAVN  141 (520)
Q Consensus        77 ~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r-------------~d-~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Id  141 (520)
                      .....++++|+|+||.+++.+|+. .+....|             .+ .+.+.+|+..++..+.   +.|    .++.||
T Consensus       117 ~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~---~~~----~~~~Id  189 (213)
T 2plr_A          117 SFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLV---KDE----NFIVID  189 (213)
T ss_dssp             TTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHT---TTT----TCEEEE
T ss_pred             hcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHH---hhC----CEEEEE
Confidence            233469999999999999999985 3221123             11 1355666666554432   112    478999


Q ss_pred             CCCChHHHHHHHHHHHHHHh
Q psy11031        142 GERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       142 a~~~~eeV~~~i~~~l~~~~  161 (520)
                      +++++++|+++|.+.+...+
T Consensus       190 ~~~~~e~v~~~I~~~l~~~~  209 (213)
T 2plr_A          190 GTKTPKEIQIQIRKFVGELI  209 (213)
T ss_dssp             TTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999998765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.98  E-value=7.8e-05  Score=68.84  Aligned_cols=26  Identities=8%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+|+|+||+||||||+++.|+..+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35689999999999999999999876

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.96  E-value=6.1e-05  Score=72.99  Aligned_cols=138  Identities=4%  Similarity=-0.028  Sum_probs=87.7

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhc---C--C---CCCcEEEeCCCC----------CHH--
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKM---S--P---AAKAFLISGYPR----------NMR--   70 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~---~--~---~~~G~ILDGFPR----------t~~--   70 (520)
                      +...|..+.+|..+++++.+|.    +.|.....-...+|...   .  +   ..+-+|.|.|.-          .+.  
T Consensus        62 ~~rep~~t~~g~~ir~~l~~~~----~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~  137 (227)
T 3v9p_A           62 VTREPGGTRLGETLREILLNQP----MDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRD  137 (227)
T ss_dssp             EEESSSSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHH
T ss_pred             eecCCCCChHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHH
Confidence            4556777889999999999986    77776544444444321   0  1   234567896653          321  


Q ss_pred             hHHH---HHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccch--HHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCC
Q psy11031         71 DVVE---YSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVIL--SLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGE  143 (520)
Q Consensus        71 QA~~---~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~--e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~  143 (520)
                      ....   +...+..||++|+|++|.+++.+|+. |+. ..|.+.  ....+|+ +.|.+    +.+.|.  +.++.|||+
T Consensus       138 ~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~dr~E~~~~ef~~rv~~~Y~~----la~~~~--~~~~vIDa~  210 (227)
T 3v9p_A          138 KLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-PDKFESESDAFFARTRAEYLR----RAQEAP--HRFVIVDSS  210 (227)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-C---CCHHHHHHHHHHHHHHH----HHHHCT--TTEEEEETT
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-ccchhhhhHHHHHHHHHHHHH----HHHHhc--CCEEEEeCC
Confidence            1111   11224689999999999999999994 432 123332  2333444 34433    344454  349999999


Q ss_pred             CChHHHHHHHHHHHHH
Q psy11031        144 RNPVEVYADFRTAVLK  159 (520)
Q Consensus       144 ~~~eeV~~~i~~~l~~  159 (520)
                      +++++|+++|.+.|+.
T Consensus       211 ~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          211 EPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.94  E-value=2.3e-05  Score=76.88  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=32.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL  261 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl  261 (520)
                      +.|+|+|+|||||||+|+.|++++ ++.+++.+++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH-CCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC-CCeEEeccHHh
Confidence            468999999999999999999997 99999998864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.92  E-value=0.00028  Score=68.68  Aligned_cols=142  Identities=13%  Similarity=0.036  Sum_probs=84.0

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHH------------HHHHHHHhcCCCCCcEEEe----------CCCCC
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT------------EVLMLEMKMSPAAKAFLIS----------GYPRN   68 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~------------~ll~~~l~~~~~~~G~ILD----------GFPRt   68 (520)
                      ++.-|..+.+|..+++++..+.... .+......            +.|...|.   ..+-+|.|          |++|.
T Consensus        61 ~~rep~~t~~g~~ir~~l~~~~~~~-~~~~~~e~lLf~A~R~~~~~~~I~paL~---~g~~VI~DRy~~S~~AYq~~~rg  136 (236)
T 3lv8_A           61 RTREPGGTLLAEKLRALVKEEHPGE-ELQDITELLLVYAARVQLVENVIKPALA---RGEWVVGDRHDMSSQAYQGGGRQ  136 (236)
T ss_dssp             EEESSCSSHHHHHHHHHHHSCCTTS-CCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHTTTTTC
T ss_pred             eecCCCCCHHHHHHHHHHhhCCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEEeeecchHHhhhhhccC
Confidence            4456778889999999997543222 23332221            22222222   23456667          55665


Q ss_pred             HHhH-----HHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccch--HHHHHHHHHHHhccchHHHHhhhCCcEEEE
Q psy11031         69 MRDV-----VEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVIL--SLARMELANFYQNVTPVTDFFDQRGMLIAV  140 (520)
Q Consensus        69 ~~QA-----~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~--e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~I  140 (520)
                      +...     ..+...+..||++|+|+||.+++.+|+ .|+.. .|.+.  ....+|+......   +.+.|.   .++.|
T Consensus       137 l~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~-dr~E~~~~~~~~rv~~~y~~---la~~~~---~~~vI  209 (236)
T 3lv8_A          137 IAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL-DRIEKMDISFFERARERYLE---LANSDD---SVVMI  209 (236)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC-CTTTTSCHHHHHHHHHHHHH---HHHHCT---TEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc-chhhhhHHHHHHHHHHHHHH---HHHHCC---CEEEE
Confidence            5432     122223468999999999999999999 45431 23321  2344444333221   222222   38999


Q ss_pred             eCCCChHHHHHHHHHHHHHHhcc
Q psy11031        141 NGERNPVEVYADFRTAVLKILNK  163 (520)
Q Consensus       141 da~~~~eeV~~~i~~~l~~~~~~  163 (520)
                      ||++++++|+++|.+.|...+.+
T Consensus       210 Da~~sieeV~~~I~~~l~~~l~~  232 (236)
T 3lv8_A          210 DAAQSIEQVTADIRRALQDWLSQ  232 (236)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHTT
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988743

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.92  E-value=3.4e-05  Score=71.38  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .+|+|+|++||||||+++.|++.+.|..+++.+++.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence            5789999999999999999998762347787766654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.91  E-value=9.2e-05  Score=70.22  Aligned_cols=158  Identities=14%  Similarity=0.235  Sum_probs=82.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc---cCCcc----hHHHHhhhhcCCccchH----
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED---DGEGL----NSRIKSSVSAGDFVNRD----  291 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~---~~t~~----g~~i~~~l~~G~~vPd~----  291 (520)
                      ..+..|+|+||+||||||++++|++.+++....+...-.|   .-..   .+...    -..++..+..|..+...    
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR---~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~   93 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR---PPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG   93 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS---CCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeeccccc---CCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence            3567899999999999999999999874333333322222   1100   11110    12333333343322210    


Q ss_pred             ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHH
Q psy11031        292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFR  367 (520)
Q Consensus       292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~  367 (520)
                          +-..-+++.+.     .++.+|||.-+....|+.   .... .+.+||+. |+..   .|..+..+.+.+|++.-.
T Consensus        94 n~YGt~~~~v~~~l~-----~G~~vildid~qg~~~~~---~~~~-~~~~Ifi~-Pps~---~~~~e~~~~i~~r~~~~~  160 (197)
T 3ney_A           94 NMFGTKFETVHQIHK-----QNKIAILDIEPQTLKIVR---TAEL-SPFIVFIA-PTDQ---GTQTEALQQLQKDSEAIR  160 (197)
T ss_dssp             EEEEEEHHHHHHHHH-----TTCEEEEECCGGGHHHHC---STTT-CEEEEEEE-ECCB---SSCCHHHHHHHHHHHHHH
T ss_pred             eecccchhhHHHHHh-----cCCeEEEEECHHHHHHHH---hcCC-CceEEEEe-CCCc---cccchHHHHHHHHHHHHH
Confidence                00122333344     467899999877766553   2222 23567777 4433   233344566777764221


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                             .-|...-..+.||.  +.++-++++.++|..
T Consensus       161 -------~~~~~~fd~vivNd--~l~~a~~~l~~ii~~  189 (197)
T 3ney_A          161 -------SQYAHYFDLSLVNN--GVDETLKKLQEAFDQ  189 (197)
T ss_dssp             -------HHHGGGCSEEEEES--CHHHHHHHHHHHHHH
T ss_pred             -------HhhccCCCEEEECC--CHHHHHHHHHHHHHH
Confidence                   11222222455654  577777777777643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.86  E-value=0.00017  Score=67.66  Aligned_cols=39  Identities=18%  Similarity=0.423  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr  262 (520)
                      ..+.+|.|+|+.||||||+++.|+..+ +  +.+++.+..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~~v~~d~~~~   44 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYK   44 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHH-GGGEEEEEGGGCBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecCcccc
Confidence            346789999999999999999999987 7  88888877665

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.84  E-value=0.0001  Score=70.61  Aligned_cols=160  Identities=14%  Similarity=0.169  Sum_probs=66.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHH-hhCCCCeeeehhhHHhhhhcccccCCcch--------HHHHhhhhcCCcc----
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVL-QDYPNWTQISLGKLLRYFANIEDDGEGLN--------SRIKSSVSAGDFV----  288 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La-~k~~g~~~is~gdLlr~~~~~~~~~t~~g--------~~i~~~l~~G~~v----  288 (520)
                      .....+|.|+||+||||||+++.|+ ..+ .....+.....+    ....+...|        ..+......+...    
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   98 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK-NNIVKSVSVTTR----AARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE   98 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC-----CEEECCCEESS----CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC-CCcccccccCCC----CCCccccCCCeEEEecHHHhhhhhhcCceehhhh
Confidence            3456789999999999999999999 765 222222211111    111111001        1111111111111    


Q ss_pred             --------chHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEe-cCChhhhh---ccCCCCCH
Q psy11031        289 --------NRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI-DCSKLVLH---KGQIDNSV  356 (520)
Q Consensus       289 --------Pd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~L-d~~~~~~~---r~R~dD~~  356 (520)
                              +.+.    +...+.     ....+|+|.-   ...+..+.+.+.....+||+ .++.+.+.   +.|..++.
T Consensus        99 ~~~~~~~~~~~~----i~~~~~-----~~~~vild~~---~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~  166 (231)
T 3lnc_A           99 VFGNFYGVPRKN----LEDNVD-----KGVSTLLVID---WQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDS  166 (231)
T ss_dssp             ETTEEEEEECTT----HHHHHH-----HTCEEEEECC---HHHHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred             hccccCCCCHHH----HHHHHH-----cCCeEEEEcC---HHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCH
Confidence                    1111    122223     2346788754   33444455544212234444 55555432   24545677


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +.+++|+......    .+++...+ ++ |+.+ +.+++.+++...|..
T Consensus       167 ~~i~~rl~~~~~~----~~~~~~~d-~v-I~n~-~~e~~~~~l~~~i~~  208 (231)
T 3lnc_A          167 EVVEARLKGAAFE----ISHCEAYD-YV-IVNE-DIEETADRISNILRA  208 (231)
T ss_dssp             -----CHHHHHHH----HTTGGGSS-EE-EECS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HhhhcCCe-EE-EECc-CHHHHHHHHHHHHHH
Confidence            7888888755433    23333323 44 4444 788888888887765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.83  E-value=3.1e-05  Score=72.64  Aligned_cols=130  Identities=13%  Similarity=0.136  Sum_probs=85.3

Q ss_pred             CcHHHHHHHHHHccCCCCCCCCHHHHHHHHHH-------HHhcC-CCCCcEEEeCCCCCH--HhH------HHHHH----
Q psy11031         18 RNPLKMFNLFVSEEVKDFSFLSSKTVTEVLML-------EMKMS-PAAKAFLISGYPRNM--RDV------VEYSD----   77 (520)
Q Consensus        18 ~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~-------~l~~~-~~~~G~ILDGFPRt~--~QA------~~~~~----   77 (520)
                      ...|..++.++.++.    .+++..+..+...       .+... .....+|+|+||.+-  -|.      ..+..    
T Consensus        51 ~~~g~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (212)
T 2wwf_A           51 TGIGQIISKYLKMEN----SMSNETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQ  126 (212)
T ss_dssp             SHHHHHHHHHHTTSS----CCCHHHHHHHHHHHHHTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGT
T ss_pred             CcHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhh
Confidence            567888888887665    7887765544431       12110 124679999999751  221      12321    


Q ss_pred             hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         78 KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        78 ~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      ....+|.+|+|+||.+++.+|+.++  ..|.+.+.+.+|+...++....       ....+.||+++++++++++|.+.+
T Consensus       127 ~~~~~d~vi~l~~~~e~~~~Rl~~r--~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l  197 (212)
T 2wwf_A          127 GLIKPDVVFYLNVPPNYAQNRSDYG--EEIYEKVETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEV  197 (212)
T ss_dssp             TSBCCSEEEEEECCTTGGGGSTTTT--SSTTCSHHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCHHHHHHhhccC--cccccHHHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHH
Confidence            2247999999999999999998532  1334445566777554433322       234789999999999999999988


Q ss_pred             HHH
Q psy11031        158 LKI  160 (520)
Q Consensus       158 ~~~  160 (520)
                      ...
T Consensus       198 ~~~  200 (212)
T 2wwf_A          198 TKI  200 (212)
T ss_dssp             TTS
T ss_pred             HHh
Confidence            653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.82  E-value=0.00022  Score=65.37  Aligned_cols=135  Identities=8%  Similarity=-0.021  Sum_probs=80.6

Q ss_pred             cCcHHHHHHHHH-HccCCC-----CCCCCH--HHHHHHHHHHHhcC---CCCCcEEEeCCCCCHHhH-------HHHHHh
Q psy11031         17 HRNPLKMFNLFV-SEEVKD-----FSFLSS--KTVTEVLMLEMKMS---PAAKAFLISGYPRNMRDV-------VEYSDK   78 (520)
Q Consensus        17 h~s~G~~l~~~i-~~G~~~-----g~lVPd--elv~~ll~~~l~~~---~~~~G~ILDGFPRt~~QA-------~~~~~~   78 (520)
                      |++.|..+.+.+ .++...     +.+.|+  ..+...+..++...   .....+|+|||++...|+       ..+...
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~  113 (194)
T 1nks_A           34 IINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE  113 (194)
T ss_dssp             EEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH
T ss_pred             EEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh
Confidence            788888887766 344321     235555  33444444444321   345789999998766661       123333


Q ss_pred             cCCcCEEEEEEcCHHHHHHH-h-h--hCccCCccchHHH--HHHHHHHHhccchHHHHhhhCCcEEEE-eCCCChHHHHH
Q psy11031         79 IKTINGVILIAWRQSLLERQ-I-D--YGAKLGHVILSLA--RMELANFYQNVTPVTDFFDQRGMLIAV-NGERNPVEVYA  151 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~R-l-~--rg~~~~r~d~e~i--~~Rl~~Y~~~t~pvi~~Y~~~~~l~~I-da~~~~eeV~~  151 (520)
                      . .|+++|+|+||.+++.+| + .  |+. ..+.+.+.+  .+|+.....   ...+.|.. ..++.| |++++++++++
T Consensus       114 ~-~~~~vi~l~~~~~~~~~rr~~~~~R~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~I~d~~~~~e~v~~  187 (194)
T 1nks_A          114 I-NPSVIFLLEADPKIILSRQKRDTTRNR-NDYSDESVILETINFARYAA---TASAVLAG-STVKVIVNVEGDPSIAAN  187 (194)
T ss_dssp             H-CCSEEEEEECCHHHHHHHHHHCTTTCC-CCCCSHHHHHHHHHHHHHHH---HHHHHHHT-CEEEEEECCSSCHHHHHH
T ss_pred             c-CCCEEEEEeCCHHHHHHHHHhhcccCC-CCccCHHHHHHHHHHHHHHH---HHHHHhcC-CcEEEEeCCCCCHHHHHH
Confidence            2 589999999999886644 6 3  432 012233332  234443332   23444532 347889 99999999999


Q ss_pred             HHHHHH
Q psy11031        152 DFRTAV  157 (520)
Q Consensus       152 ~i~~~l  157 (520)
                      +|.+.+
T Consensus       188 ~I~~~l  193 (194)
T 1nks_A          188 EIIRSM  193 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.81  E-value=0.00064  Score=64.97  Aligned_cols=144  Identities=9%  Similarity=0.033  Sum_probs=86.9

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh---cC--C---CCCcEEEeC----------CCCCH--H
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK---MS--P---AAKAFLISG----------YPRNM--R   70 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~---~~--~---~~~G~ILDG----------FPRt~--~   70 (520)
                      +...|..+.+|..+++++.+|. ...+-|.....=....|..   +.  +   ...-+|.|=          +-|.+  +
T Consensus        39 ~~~~p~~~~~g~~i~~~l~~~~-~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~  117 (213)
T 4edh_A           39 LTREPGGTPLAERIRELLLAPS-DEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEA  117 (213)
T ss_dssp             EEESSCSSHHHHHHHHHHHSCC-SSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHH
T ss_pred             cccCCCCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHH
Confidence            4456777889999999999874 1123332222111122211   10  1   234456674          33433  2


Q ss_pred             hHHH---HHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccch--HHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCC
Q psy11031         71 DVVE---YSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVIL--SLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGE  143 (520)
Q Consensus        71 QA~~---~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~--e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~  143 (520)
                      ....   +...+..||++|+|+||.+++.+|+. |+. ..|.+.  ....+|+ +.|.+    +.+.|..  .++.|||+
T Consensus       118 ~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~dr~E~~~~~~~~rv~~~y~~----l~~~~~~--~~~vIDa~  190 (213)
T 4edh_A          118 RIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR-LDRFEQEDRRFFEAVRQTYLQ----RAAQAPE--RYQVLDAG  190 (213)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS-CCTTTTSCHHHHHHHHHHHHH----HHHHCTT--TEEEEETT
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cCcccccHHHHHHHHHHHHHH----HHHHCCC--cEEEEeCC
Confidence            2211   22234689999999999999999994 432 123332  2344454 44543    3455543  49999999


Q ss_pred             CChHHHHHHHHHHHHHHhc
Q psy11031        144 RNPVEVYADFRTAVLKILN  162 (520)
Q Consensus       144 ~~~eeV~~~i~~~l~~~~~  162 (520)
                      +++++|+++|.+.|...+.
T Consensus       191 ~s~eeV~~~I~~~l~~~l~  209 (213)
T 4edh_A          191 LPLAEVQAGLDRLLPNLLE  209 (213)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999988763

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.81  E-value=0.00014  Score=69.60  Aligned_cols=141  Identities=8%  Similarity=-0.003  Sum_probs=84.2

Q ss_pred             ccCcccCcHHHHHHHHHHccCC-CCCCCCHHH-H-----------HHHHHHHHhcCCCCCcEEEe----------CCCCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEVK-DFSFLSSKT-V-----------TEVLMLEMKMSPAAKAFLIS----------GYPRN   68 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~~-~g~lVPdel-v-----------~~ll~~~l~~~~~~~G~ILD----------GFPRt   68 (520)
                      ..-|..+.+|..+++++..+.. ....+.... .           .+.|...|.   ...-+|.|          |+=|.
T Consensus        38 ~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~~i~paL~---~g~~VI~DRy~~S~~AYq~~~~g  114 (213)
T 4tmk_A           38 TREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRG  114 (213)
T ss_dssp             EESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTC
T ss_pred             eeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEcCcHhHHHHHcccccC
Confidence            4467778899999999984321 011233321 1           122222232   23445777          33333


Q ss_pred             HHh-----HHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHH-HHHhccchHHHHhhhCCcEEE
Q psy11031         69 MRD-----VVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELA-NFYQNVTPVTDFFDQRGMLIA  139 (520)
Q Consensus        69 ~~Q-----A~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~-~Y~~~t~pvi~~Y~~~~~l~~  139 (520)
                      +..     ...+...+..||++|+|+||.+++.+|+ .|+.. .|.+  .....+|+. .|.+-    .+.+   +.++.
T Consensus       115 ~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~-dr~E~~~~~f~~rv~~~y~~l----a~~~---~~~~v  186 (213)
T 4tmk_A          115 IDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL-DRIEQESFDFFNRTRARYLEL----AAQD---KSIHT  186 (213)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-CTTTTSCHHHHHHHHHHHHHH----HHTC---TTEEE
T ss_pred             CCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-cchhhhHHHHHHHHHHHHHHH----HHHC---CcEEE
Confidence            221     2222223568999999999999999999 46432 3332  122333433 44432    1222   56999


Q ss_pred             EeCCCChHHHHHHHHHHHHHHhcc
Q psy11031        140 VNGERNPVEVYADFRTAVLKILNK  163 (520)
Q Consensus       140 Ida~~~~eeV~~~i~~~l~~~~~~  163 (520)
                      |||++++++|+++|.+.|...+.+
T Consensus       187 IDa~~s~eeV~~~I~~~l~~~l~~  210 (213)
T 4tmk_A          187 IDATQPLEAVMDAIRTTVTHWVKE  210 (213)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999987743

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.80  E-value=0.00019  Score=77.32  Aligned_cols=292  Identities=11%  Similarity=0.090  Sum_probs=146.6

Q ss_pred             cCCcCEEEEEEcCHHHHHHHhh-hCcc------CCccchHHHHHHHHHHHhccchHHHHhhhC-CcEEEEeCCC---ChH
Q psy11031         79 IKTINGVILIAWRQSLLERQID-YGAK------LGHVILSLARMELANFYQNVTPVTDFFDQR-GMLIAVNGER---NPV  147 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~Rl~-rg~~------~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Ida~~---~~e  147 (520)
                      .+.+++.++|+++.++..+|+. +...      ....|.+ -..+...|.+.-...+..=... .-.+.|||+.   ...
T Consensus       145 ~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~-~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl  223 (500)
T 3czp_A          145 EGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWK-QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRAL  223 (500)
T ss_dssp             TTCEEEEEEEECCHHHHHHCC-------------CSSCTT-SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHH
T ss_pred             CCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHH-HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHH
Confidence            4578899999999999999984 3211      0111221 1345566655544444432222 2478999997   457


Q ss_pred             HHHHHHHHHHHHHhccCCCC--CCCCCCCCCCCCCCCCCCCccccccccccCCCCCC-CCC----CCCcccCcccccccc
Q psy11031        148 EVYADFRTAVLKILNKNNVV--PGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKH-FTR----PNGVVSEPYRKIKSV  220 (520)
Q Consensus       148 eV~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~  220 (520)
                      .|.+.|.+.|...+......  ....++..     ...+..+.+..++.... .... ++.    +...+..-+-.  .-
T Consensus       224 ~v~~~il~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~-~~k~~y~~~l~~l~~~L~~lQ~~--~~  295 (500)
T 3czp_A          224 TVGRILLEGLQAALATKERAKRQPHAAPLV-----SSLDNRGLLDSLDLGQY-LDKDAYKEQLAAEQARLAGLIRD--KR  295 (500)
T ss_dssp             HHHHHHHHHHHHHHHC----------------------CTTHHHHTCCTTCC-CCHHHHHHHHHHHHHHHHHHHHS--GG
T ss_pred             HHHHHHHHHHHHHHHhcccccccccCCCcc-----cCcccccccccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            88888888888877431100  00000000     00010111111111000 0000 000    00000000000  01


Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY  298 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~  298 (520)
                      ....+.+|++.|..||||++++++|.+.+.  |+..++++        . ++..   +..+.++               .
T Consensus       296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~--------~-Pt~~---E~~~~yl---------------~  348 (500)
T 3czp_A          296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA--------A-PTEE---ERAQPYL---------------W  348 (500)
T ss_dssp             GGGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC--------S-CCHH---HHTSCTT---------------H
T ss_pred             hCCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC--------C-CChh---hhcchHH---------------H
Confidence            235788999999999999999999998751  33333331        1 0111   1111122               2


Q ss_pred             HHHhccccCCCcEEEEeCCC-------------------CCHHHHHHHHhhcC---CCCCEEEecCChhhhhc---cCC-
Q psy11031        299 AEMKKTKYTEADGIVIDGFP-------------------REMSQLIDFENKYQ---IHPPMILIDCSKLVLHK---GQI-  352 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFP-------------------rt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~r---~R~-  352 (520)
                      .... +.+..+.-.|.|++-                   +-++++..||..+.   .+...|||+++.+...+   .|. 
T Consensus       349 R~~~-~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~  427 (500)
T 3czp_A          349 RFWR-HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK  427 (500)
T ss_dssp             HHHT-TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHH-hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            2333 234446667888651                   12356667766543   34557999999875321   110 


Q ss_pred             --C----CCHHHH--HHHHHHHHHHhHHHHHHhhhC-CCEEEEECCCC---HHHHHHHHHHHHHHHH
Q psy11031        353 --D----NSVSAF--RRRLELFRERTLPMLRAMDVE-TRLTIVDGDTQ---LPQVREEFERVLKKII  407 (520)
Q Consensus       353 --d----D~~e~~--~~Rl~~f~~~~~~l~~~y~~~-~~l~~IDa~~~---~e~V~~~I~~~I~~~i  407 (520)
                        +    -++.-+  ..+.+.|.+....++..-+.. ..+++|+|+..   .-.|.+.|.+.|...+
T Consensus       428 ~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l  494 (500)
T 3czp_A          428 TPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAY  494 (500)
T ss_dssp             SSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHH
Confidence              0    111112  245677887777777665433 36999999974   3456666666666555

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=97.77  E-value=8.2e-05  Score=76.19  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++.+|+|.|+-||||||+++.|++.+
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L   31 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAA   31 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999999986

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.71  E-value=2.9e-05  Score=82.95  Aligned_cols=109  Identities=12%  Similarity=0.115  Sum_probs=60.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc-CC---ccchHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA-GD---FVNRDVVL  294 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~-G~---~vPd~lv~  294 (520)
                      ..+.+|+|+|.|||||||++++|++.+    ....+++.+++.+   ... ....    ...+++. |+   ..-...+.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~---~~~-g~~~----~~~ifd~~g~~~~r~re~~~~  108 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR---DMV-KTYK----SFEFFLPDNEEGLKIRKQCAL  108 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH---HHH-CSCC----CGGGGCTTCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh---hhc-cCCC----cccccCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999874    1345666766554   211 1100    0011221 11   01112223


Q ss_pred             HHH---HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecC
Q psy11031        295 DIV---YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDC  342 (520)
Q Consensus       295 ~ll---~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~  342 (520)
                      ..+   ...+.   ...+.++|+|...++.++.+.+.+.+.... .+++|+|
T Consensus       109 ~~l~~~~~~l~---~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~  157 (469)
T 1bif_A          109 AALNDVRKFLS---EEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVES  157 (469)
T ss_dssp             HHHHHHHHHHH---TTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHHHH---hCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEE
Confidence            333   33332   134668999998888876666643332212 4677763

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.66  E-value=0.0004  Score=64.48  Aligned_cols=128  Identities=10%  Similarity=0.084  Sum_probs=80.6

Q ss_pred             cCcHHHHHHHHHHccCCCCCCCCHHHHHHHH------------HHHHhcCCCCCcEEEeCCCCCHH-----------hHH
Q psy11031         17 HRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL------------MLEMKMSPAAKAFLISGYPRNMR-----------DVV   73 (520)
Q Consensus        17 h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll------------~~~l~~~~~~~G~ILDGFPRt~~-----------QA~   73 (520)
                      ....|..+++++.++.    .++.... .++            ...+.   ....+|+|+||++..           ...
T Consensus        42 ~~~~g~~i~~~~~~~~----~~~~~~~-~~l~~~~r~~~~~~i~~~l~---~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~  113 (204)
T 2v54_A           42 STVTGKMIDDYLTRKK----TYNDHIV-NLLFCANRWEFASFIQEQLE---QGITLIVDRYAFSGVAYAAAKGASMTLSK  113 (204)
T ss_dssp             TSHHHHHHHHHHTSSC----CCCHHHH-HHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHHTTCCHHHHH
T ss_pred             CCcHHHHHHHHHhcCC----CCCHHHH-HHHHHHHHHHHHHHHHHHHH---CCCEEEEECchhhHHHHHHccCCCHHHHH
Confidence            3457899999887654    4554422 332            12222   235689999998632           122


Q ss_pred             HHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHH-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031         74 EYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELAN-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD  152 (520)
Q Consensus        74 ~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~  152 (520)
                      .+......||.||+|+||.+++.+  .|+.  .+.+.+.+.+|+.. |.+...    .|.  +.++.||+++++++|+++
T Consensus       114 ~~~~~~~~~d~vi~l~~~~e~~~~--~R~~--d~~e~~~~~~rl~~~y~~~~~----~~~--~~~~~Id~~~~~~~v~~~  183 (204)
T 2v54_A          114 SYESGLPKPDLVIFLESGSKEINR--NVGE--EIYEDVTFQQKVLQEYKKMIE----EGD--IHWQIISSEFEEDVKKEL  183 (204)
T ss_dssp             HHHTTSBCCSEEEEECCCHHHHTT--CCSS--STTCCSHHHHHHHHHHHHHHT----TCS--SCEEEECTTSCHHHHHHH
T ss_pred             HHhcCCCCCCEEEEEeCCHHHHHh--hcCc--ccccHHHHHHHHHHHHHHHHH----hCC--CcEEEEECCCCHHHHHHH
Confidence            222223479999999999998776  3331  12222356677765 443321    222  347899999999999999


Q ss_pred             HHHHHHHHhc
Q psy11031        153 FRTAVLKILN  162 (520)
Q Consensus       153 i~~~l~~~~~  162 (520)
                      |.+.+...+.
T Consensus       184 i~~~l~~~l~  193 (204)
T 2v54_A          184 IKNIVIEAIH  193 (204)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988773

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.65  E-value=0.00012  Score=69.38  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=58.2

Q ss_pred             CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-----hCccCCcc--chHHHHHHHH-HHHhccchH
Q psy11031         56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-----YGAKLGHV--ILSLARMELA-NFYQNVTPV  127 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-----rg~~~~r~--d~e~i~~Rl~-~Y~~~t~pv  127 (520)
                      ...|+|+||+.  +.++     ....++.+|+|+|+.+++.+|..     ||.. ...  ..+.+.+|+. .|.+.+.|+
T Consensus       122 ~~~~~vldg~~--~~~~-----~~~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~-~~~~~~~~~i~~R~~~~~~~~~~pl  193 (227)
T 1cke_A          122 ELPGLIADGRD--MGTV-----VFPDAPVKIFLDASSEERAHRRMLQLQVKGFS-VNFERLLAEIKERDDRDRNRAVAPL  193 (227)
T ss_dssp             CTTCEEEEESS--CCCC-----CCTTCSEEEEEECCHHHHHHHHHHHHHHHTCC-CCHHHHHHHHC-------------C
T ss_pred             hCCCEEEECCC--ccce-----EecCCCEEEEEeCCHHHHHHHHHHHHHhCCcc-CCHHHHHHHHHHHHHhhhhhcccCc
Confidence            46799999984  3332     22468999999999999888842     3221 011  1344566654 577777787


Q ss_pred             HHHhhhCCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031        128 TDFFDQRGMLIAVNGE-RNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       128 i~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~~  161 (520)
                      ..+|..    +.||++ .++++|+++|.+.+...+
T Consensus       194 ~~~~~~----~~Id~~~~~~~ev~~~I~~~l~~~~  224 (227)
T 1cke_A          194 VPAADA----LVLDSTTLSIEQVIEKALQYARQKL  224 (227)
T ss_dssp             CCCTTC----EEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCE----EEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            766642    689999 899999999999998765

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=97.57  E-value=0.00028  Score=72.42  Aligned_cols=28  Identities=14%  Similarity=0.146  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHH-HHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMC-QKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a-~~La~k~  249 (520)
                      ..+..+|+|.|+-||||||++ +.|++.+
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l   37 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFA   37 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            445789999999999999999 9999876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.53  E-value=0.00047  Score=64.49  Aligned_cols=130  Identities=8%  Similarity=0.049  Sum_probs=76.4

Q ss_pred             CcHHHHHHHHHHccCCCCCCCCHHHHHHH-----------HHHHHhcCCCCCcEEEe-----CCCCCHHh-------HHH
Q psy11031         18 RNPLKMFNLFVSEEVKDFSFLSSKTVTEV-----------LMLEMKMSPAAKAFLIS-----GYPRNMRD-------VVE   74 (520)
Q Consensus        18 ~s~G~~l~~~i~~G~~~g~lVPdelv~~l-----------l~~~l~~~~~~~G~ILD-----GFPRt~~Q-------A~~   74 (520)
                      ...|..+++++.++.    .+++.....+           +...+.   ....+|+|     |||++..+       ...
T Consensus        50 ~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~i~~~l~---~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~  122 (215)
T 1nn5_A           50 TEIGKLLSSYLQKKS----DVEDHSVHLLFSANRWEQVPLIKEKLS---QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQ  122 (215)
T ss_dssp             SHHHHHHHHHHTTSS----CCCHHHHHHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHTSTTCCHHHHHG
T ss_pred             CcHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEeCCcccHHHHHhhcCCCCHHHHHH
Confidence            566888888887665    6777644322           222222   24568889     44543221       211


Q ss_pred             HHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHH-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031         75 YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELAN-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF  153 (520)
Q Consensus        75 ~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i  153 (520)
                      +......++++|+|+||.+++.+|+.++.  .|.+.+.+.+|+.. |.+...    .|  ...++.||++.++++++++|
T Consensus       123 l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~--~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i  194 (215)
T 1nn5_A          123 PDVGLPKPDLVLFLQLQLADAAKRGAFGH--ERYENGAFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAVHEDI  194 (215)
T ss_dssp             GGTTSBCCSEEEEEECCHHHHHHC-------CTTCSHHHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEeCCHHHHHHHhccCc--cccchHHHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHHHHHH
Confidence            22223468999999999999999996431  23322223344332 222111    11  13478999999999999999


Q ss_pred             HHHHHHHhc
Q psy11031        154 RTAVLKILN  162 (520)
Q Consensus       154 ~~~l~~~~~  162 (520)
                      .+.+...+.
T Consensus       195 ~~~l~~~l~  203 (215)
T 1nn5_A          195 RVLSEDAIA  203 (215)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.45  E-value=0.00089  Score=61.15  Aligned_cols=139  Identities=4%  Similarity=-0.072  Sum_probs=75.4

Q ss_pred             CcccCcHHHHHHHHHHc-cC-----CCCCCCC--HHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHH-------HHHHh
Q psy11031         14 FPSHRNPLKMFNLFVSE-EV-----KDFSFLS--SKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVV-------EYSDK   78 (520)
Q Consensus        14 ~~~h~s~G~~l~~~i~~-G~-----~~g~lVP--delv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~-------~~~~~   78 (520)
                      ++ ++++|+.++.++.+ |.     .-+.+.+  +..+..++.+.+.......+||+||++....++.       .+...
T Consensus        34 ~~-~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~  112 (192)
T 1kht_A           34 YK-MVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE  112 (192)
T ss_dssp             CE-EEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH
T ss_pred             eE-EEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhccCCeEEEccceeccccccccccCcHHHHhc
Confidence            55 88999998887653 22     0111111  1233333333343212346899999986433321       11222


Q ss_pred             cCCcCEEEEEEcCHHHHHH-HhhhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEE-eCCCChHHHHHHHH
Q psy11031         79 IKTINGVILIAWRQSLLER-QIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAV-NGERNPVEVYADFR  154 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~-Rl~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~I-da~~~~eeV~~~i~  154 (520)
                       ..++++|+|+||.+++.+ |+..... +|.  ..+.+..+.. ..+........|... .++.| |++++++++++.|.
T Consensus       113 -~~~~~~i~l~~~~~~~~~rRl~~~~R-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~i~~~~~~~e~~~~~i~  188 (192)
T 1kht_A          113 -LNPDLIIVVETTGDEILMRRMSDETR-VRDLDTASTIEQHQF-MNRCAAMSYGVLTGA-TVKIVQNRNGLLDQAVEELT  188 (192)
T ss_dssp             -HCCSEEEEEECCHHHHHHHHHTSSSC-SSSCCCHHHHHHHHH-HHHHHHHHHHHHHCC-EEEEEECCTTCHHHHHHHHH
T ss_pred             -cCCCEEEEEeCCHHHHHHHHhhhccc-CCCcCCHHHHHHHHH-HHHHHHHHHHHhcCC-cEEEEeCCCCCHHHHHHHHH
Confidence             157999999999999885 8842100 222  2333333333 223333334445332 24444 67677999999998


Q ss_pred             HHH
Q psy11031        155 TAV  157 (520)
Q Consensus       155 ~~l  157 (520)
                      +.+
T Consensus       189 ~~i  191 (192)
T 1kht_A          189 NVL  191 (192)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=97.44  E-value=0.00089  Score=68.39  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+|+|.|+.||||||+++.|++.+
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L   28 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALG   28 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC--
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999875

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=97.43  E-value=0.001  Score=66.99  Aligned_cols=144  Identities=10%  Similarity=0.079  Sum_probs=83.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      ..+.+|+|.|..||||||++++|.+.+.  |+..+++    +         .+-+..+..              .++...
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----~---------~Pt~eE~~~--------------~yl~R~  136 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----T---------KPTETERGQ--------------WYFQRY  136 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----C---------SCCHHHHTS--------------CTTHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----C---------CcChHHHhc--------------hHHHHH
Confidence            4589999999999999999999998761  2333332    1         111222211              011222


Q ss_pred             HhccccCCCcEEEEeCCC-------------------CCHHHHHHHHhhc---CCCCCEEEecCChhhhh-c--cCCC--
Q psy11031        301 MKKTKYTEADGIVIDGFP-------------------REMSQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQID--  353 (520)
Q Consensus       301 l~~~~~~~~~G~ILDGFP-------------------rt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R~d--  353 (520)
                      .. +.+..+.-+|.|+|-                   +-+.++..||..+   +.+...|||+++.+... |  .|.+  
T Consensus       137 ~~-~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp  215 (304)
T 3czq_A          137 VA-TFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDP  215 (304)
T ss_dssp             HT-TCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCT
T ss_pred             HH-hcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCc
Confidence            22 123456678888762                   1234666665553   34566899999987532 1  1211  


Q ss_pred             -----CCHHHHH--HHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHH
Q psy11031        354 -----NSVSAFR--RRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQ  394 (520)
Q Consensus       354 -----D~~e~~~--~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~  394 (520)
                           -+..-++  .++..|.+....++..-+. ...+++|||+.....
T Consensus       216 ~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~a  264 (304)
T 3czq_A          216 LKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRS  264 (304)
T ss_dssp             TTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchH
Confidence                 1333333  3456777776666665432 246999999986543

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=97.42  E-value=0.0017  Score=67.27  Aligned_cols=28  Identities=25%  Similarity=0.196  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+..+|+|.|+.||||||+++.|++.+
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L   73 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALG   73 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC--
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467889999999999999999999875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.38  E-value=0.00062  Score=66.52  Aligned_cols=98  Identities=12%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             eCCCCCHHhH---HHHHH---h----cCCcCEEEEEEcCHHHHHHHh-hhCccC--Cccc--hHHHHHHHHHHHhc--cc
Q psy11031         63 SGYPRNMRDV---VEYSD---K----IKTINGVILIAWRQSLLERQI-DYGAKL--GHVI--LSLARMELANFYQN--VT  125 (520)
Q Consensus        63 DGFPRt~~QA---~~~~~---~----~~~pd~VI~L~~pd~~l~~Rl-~rg~~~--~r~d--~e~i~~Rl~~Y~~~--t~  125 (520)
                      +|++++..|-   ..+..   .    ...||+||+|++|.+++.+|+ .|+...  +..+  .+.+..+++.|.++  +.
T Consensus       146 ~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~  225 (263)
T 1p5z_B          146 ESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLK  225 (263)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHhhhccCCCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccch
Confidence            3888887641   11211   1    237999999999999999998 454321  1111  44556677777654  44


Q ss_pred             hHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        126 PVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       126 pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      +...+|.+ +.++.|||++++++|+++|.+.|...+
T Consensus       226 ~~y~~~~~-~~~~~Id~~~~~eev~~~I~~~l~~~l  260 (263)
T 1p5z_B          226 TNFDYLQE-VPILTLDVNEDFKDKYESLVEKVKEFL  260 (263)
T ss_dssp             CSCGGGGG-SCEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcc-CCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            45455544 458999999999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.37  E-value=0.00041  Score=62.81  Aligned_cols=107  Identities=10%  Similarity=-0.014  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHH
Q psy11031         41 KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARME  116 (520)
Q Consensus        41 elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~R  116 (520)
                      +++.+++...+.......++|+||++++..+...+.+.   ...+..+|+|+||.+++.+|+. |+.  ....++.+.++
T Consensus        62 ~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~i~~~  139 (181)
T 1ly1_A           62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSM  139 (181)
T ss_dssp             HHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG--GCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc--CCCCHHHHHHH
Confidence            34455666666332356899999999998887555532   2235579999999999999994 432  12347888999


Q ss_pred             HHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       117 l~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      +..|....     .|.    .+.||++.+ ++|..+|...+..
T Consensus       140 ~~~~~~~~-----~~~----~~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          140 YKSMREYL-----GLP----VYNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             HHHHHHHH-----TCC----CC---------------------
T ss_pred             HHHhhccC-----CCC----ccccCCCCC-ceeeehhhhhhhc
Confidence            99998762     122    223888885 8888888776654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.35  E-value=0.00016  Score=66.68  Aligned_cols=161  Identities=12%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      ...+.+|+|+|+|||||||+++.|+..+ +.  .+++.+++..   .. ..+...+     ++.... .+...+.+.+..
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~~~---~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~   74 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLWG---YI-KHGRIDP-----WLPQSH-QQNRMIMQIAAD   74 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHHH---TC-CSSCCCT-----TSSSHH-HHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccchhh---hh-hcccccC-----Cccchh-hhhHHHHHHHHH
Confidence            3456789999999999999999999874 54  4777766655   21 1111000     110000 012233333322


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCC-CCCHHHHHHHHHHHHHHhHHH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQI-DNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~-dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      .... ....+..+++|++.+.. +...+... ..+..++++.++..++.     +.+. ..+.+.++.    ..+...++
T Consensus        75 ~~~~-~~~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~----~~~~~~~l  147 (191)
T 1zp6_A           75 VAGR-YAKEGYFVILDGVVRPD-WLPAFTAL-ARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVAD----LHSQFADL  147 (191)
T ss_dssp             HHHH-HHHTSCEEEECSCCCTT-TTHHHHTT-CSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHH----HHHHTTCC
T ss_pred             HHHH-HhccCCeEEEeccCcHH-HHHHHHhc-CCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHH----HHHHHhcc
Confidence            2110 11124468899976542 22223321 22335788999886531     2211 112332222    12222222


Q ss_pred             HHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      .. |.   . ++||.+ .+++++++.|.+.|..
T Consensus       148 ~~-~~---~-~~i~t~~~~~~~~~~~i~~~l~~  175 (191)
T 1zp6_A          148 GA-FE---H-HVLPVSGKDTDQALQSAINALQS  175 (191)
T ss_dssp             GG-GG---G-GEEECTTCCTTTTTTTTHHHHHH
T ss_pred             Cc-cc---c-cEEECCCCCHHHHHHHHHHHHHh
Confidence            11 21   1 357765 6888888888777653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.31  E-value=0.0019  Score=59.51  Aligned_cols=75  Identities=12%  Similarity=-0.035  Sum_probs=55.6

Q ss_pred             CCcCEEEEEEcCHHHHHHHhh-hCccCCccch----HHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031         80 KTINGVILIAWRQSLLERQID-YGAKLGHVIL----SLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR  154 (520)
Q Consensus        80 ~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~----e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~  154 (520)
                      ..++.+|+|+||.+++.+|+. |+    |..+    +...+|+..++..   +.++|......+.||++.++++|+++|.
T Consensus       123 ~~~d~vi~L~~~~e~~~~Rl~~R~----r~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~  195 (205)
T 2jaq_A          123 LSFDIVIYLRVSTKTAISRIKKRG----RSEELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIM  195 (205)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHT----CHHHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcC----ChhhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHH
Confidence            468999999999999999994 43    3321    2345666665553   5667764455899999999999999999


Q ss_pred             HHHHHHh
Q psy11031        155 TAVLKIL  161 (520)
Q Consensus       155 ~~l~~~~  161 (520)
                      +.+..+.
T Consensus       196 ~~l~~~~  202 (205)
T 2jaq_A          196 NKLNSIK  202 (205)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhc
Confidence            9987543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.30  E-value=0.00069  Score=73.88  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|+|+|++||||||+++.|+..+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhh
Confidence            356789999999999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.24  E-value=0.00017  Score=73.54  Aligned_cols=36  Identities=17%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL  261 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl  261 (520)
                      ++.|+|+||+||||||+|..|++++ ++.++|++.+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~q   40 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL-PCELISVDSAL   40 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchh
Confidence            5689999999999999999999998 99999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.007  Score=56.24  Aligned_cols=96  Identities=9%  Similarity=0.060  Sum_probs=68.9

Q ss_pred             CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhC
Q psy11031         56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQR  134 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~  134 (520)
                      ...++|+|+......+...+......+..+|+|+||.+++.+|+. |+..  ..+.+.+.+.+..+.    ++   |. .
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~~~~~~~~~~----~~---~~-~  154 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--FMPSSLLQTQLETLE----DP---RG-E  154 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS--CCCHHHHHHHHHHCC----CC---TT-S
T ss_pred             cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc--CCCHHHHHHHHHhcC----CC---CC-C
Confidence            467899999998888876666655566899999999999999994 4321  123444555444443    22   22 2


Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        135 GMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       135 ~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      ...+.||++.+++++.++|.+.|...-
T Consensus       155 ~~~~~Id~~~~~~e~~~~I~~~l~~~~  181 (202)
T 3t61_A          155 VRTVAVDVAQPLAEIVREALAGLARLA  181 (202)
T ss_dssp             TTEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            237789999999999999999998644

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.11  E-value=0.0082  Score=57.44  Aligned_cols=163  Identities=18%  Similarity=0.244  Sum_probs=84.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCC-CeeeehhhHHhhhhcccccCCc---c-hHHHHhhhh----------cCCc
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN-WTQISLGKLLRYFANIEDDGEG---L-NSRIKSSVS----------AGDF  287 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g-~~~is~gdLlr~~~~~~~~~t~---~-g~~i~~~l~----------~G~~  287 (520)
                      ....+++|+||.||||||+++.|+..++. -...++.---|........+..   . .........          .|..
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~   93 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY   93 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence            34678999999999999999999987621 0111211000100000000000   0 011111111          1111


Q ss_pred             --cchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhh-h--ccCCCCCHHHHHH
Q psy11031        288 --VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVL-H--KGQIDNSVSAFRR  361 (520)
Q Consensus       288 --vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~-~--r~R~dD~~e~~~~  361 (520)
                        .+.+    -+...+.     .++-+|+|   -+..-+..+.+.+. ....|++-.++ +.+ .  ..|..++++.+.+
T Consensus        94 yg~~~~----~v~~~l~-----~G~illLD---LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~  160 (219)
T 1s96_A           94 YGTSRE----AIEQVLA-----TGVDVFLD---IDWQGAQQIRQKMP-HARSIFILPPSKIELDRRLRGRGQDSEEVIAK  160 (219)
T ss_dssp             EEEEHH----HHHHHHT-----TTCEEEEE---CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHHHHHTTSCSCHHHHHH
T ss_pred             CCCCHH----HHHHHHh-----cCCeEEEE---ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHHHHHHcCCCCHHHHHH
Confidence              2222    2333333     35789999   66666666666665 34455554433 222 1  2455678999999


Q ss_pred             HHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        362 RLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      |+.......    .++..- ..+.+|  .+.++-++++.+.|..
T Consensus       161 rl~~a~~e~----~~~~~~-d~~i~N--d~l~~a~~~l~~ii~~  197 (219)
T 1s96_A          161 RMAQAVAEM----SHYAEY-DYLIVN--DDFDTALTDLKTIIRA  197 (219)
T ss_dssp             HHHHHHHHH----TTGGGS-SEEEEC--SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----hhccCC-CEEEEC--cCHHHHHHHHHHHHHH
Confidence            987554332    222222 234444  4888888888888855

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.08  E-value=0.007  Score=55.13  Aligned_cols=101  Identities=21%  Similarity=0.266  Sum_probs=59.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH----HHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV----LDIVY  298 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv----~~ll~  298 (520)
                      ..+.++.|+|++||||||+++.+.   .|...++. +.++   ......            .|...-...+    .....
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~---~~~~~~~~-d~~~---g~~~~~------------~~~~~~~~~~~~~~~~~~~   67 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF---KPTEVISS-DFCR---GLMSDD------------ENDQTVTGAAFDVLHYIVS   67 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS---CGGGEEEH-HHHH---HHHCSS------------TTCGGGHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc---cCCeEEcc-HHHH---HHhcCc------------ccchhhHHHHHHHHHHHHH
Confidence            346789999999999999999864   25666665 4444   222111            0111111111    11222


Q ss_pred             HHHhccccCCCcEEEEeCCCCC---HHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031        299 AEMKKTKYTEADGIVIDGFPRE---MSQLIDFENKYQIHPPMILIDCSKLVL  347 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt---~~Qae~l~~~~~~p~~VI~Ld~~~~~~  347 (520)
                      ..+.     .+...++|.....   ..|.-.+-..+...+.+++||-|...+
T Consensus        68 ~~~~-----~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~L  114 (171)
T 4gp7_A           68 KRLQ-----LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVC  114 (171)
T ss_dssp             HHHH-----TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred             HHHh-----CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHH
Confidence            2222     3456788875443   345556667777778899999987643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.04  E-value=0.00044  Score=66.34  Aligned_cols=81  Identities=9%  Similarity=0.048  Sum_probs=42.5

Q ss_pred             cCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHh-hhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         79 IKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFF-DQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        79 ~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y-~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                      ...||++|+|+||.+++.+|+ .|+....+.......+|+..++..+.  ..|| ...+.++.|||++++++|+++|.+.
T Consensus       144 ~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~  221 (230)
T 2vp4_A          144 HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRS  221 (230)
T ss_dssp             CCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHH--TSCCSSCCCEEEEEECCC------------
T ss_pred             cCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHH
Confidence            457999999999999999998 45321111111246677777766642  1222 4455689999999999999999999


Q ss_pred             HHHHh
Q psy11031        157 VLKIL  161 (520)
Q Consensus       157 l~~~~  161 (520)
                      +..++
T Consensus       222 l~~~~  226 (230)
T 2vp4_A          222 ESSIF  226 (230)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            88755

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.04  E-value=0.00033  Score=71.74  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      .+++.|+|+||+||||||+|..|++++ +...||++.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence            456799999999999999999999998 9999998866

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.03  E-value=0.00018  Score=72.13  Aligned_cols=38  Identities=18%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr  262 (520)
                      ++.+|.|.|++||||||+|+.|++.+ |     +.+|+++++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l-g~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF-RREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH-HHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH-hhcCCCeeEeecchhhc
Confidence            46789999999999999999999986 7     78999998886

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.95  E-value=0.008  Score=56.45  Aligned_cols=135  Identities=11%  Similarity=0.085  Sum_probs=80.0

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH----------HHHHHhcCCCCCcEEEeCCC----------CCHH
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV----------LMLEMKMSPAAKAFLISGYP----------RNMR   70 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l----------l~~~l~~~~~~~G~ILDGFP----------Rt~~   70 (520)
                      +...|..+..|..++.++..+.    .-|.....-.          |...+.   ..+-+|.|-|-          +...
T Consensus        33 ~treP~~t~~~~~ir~~l~~~~----~~~~~~~ll~~a~r~~~~~~I~~~L~---~g~~Vi~DRy~~S~~ayq~~~~~~~  105 (197)
T 3hjn_A           33 LKREPGGTETGEKIRKILLEEE----VTPKAELFLFLASRNLLVTEIKQYLS---EGYAVLLDRYTDSSVAYQGFGRNLG  105 (197)
T ss_dssp             EEESSCSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHHHHHHT---TTCEEEEESCHHHHHHHHTTTTCSC
T ss_pred             EEECCCCCcHHHHHHHHhhccc----CChHHHHHHHHHHHHHHHHHHHHHHH---CCCeEEecccchHHHHHHHhccCCC
Confidence            3456778899999999988776    5554332211          122221   22335667553          2211


Q ss_pred             -----hHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCCC
Q psy11031         71 -----DVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGER  144 (520)
Q Consensus        71 -----QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~~  144 (520)
                           +...+...+..||++|+|++|-++..+|....   .|.+.....+|. +.|.+    +.+.|.+  .++.|||++
T Consensus       106 ~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~---dr~e~~ef~~rv~~~y~~----la~~~~~--~~~~IDa~~  176 (197)
T 3hjn_A          106 KEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL---NRFEKREFLERVREGYLV----LAREHPE--RIVVLDGKR  176 (197)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC------CTTCCHHHHHHHHHHHHH----HHHHCTT--TEEEEETTS
T ss_pred             HHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc---CccccHHHHHHHHHHHHH----HHHhCCC--CEEEEcCCC
Confidence                 11112223458999999999999998886321   232222233343 33332    3344444  389999999


Q ss_pred             ChHHHHHHHHHHHHHHh
Q psy11031        145 NPVEVYADFRTAVLKIL  161 (520)
Q Consensus       145 ~~eeV~~~i~~~l~~~~  161 (520)
                      ++++|.++|.+.|+..+
T Consensus       177 ~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          177 SIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             CHHHHHHHHHHHHSCC-
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999987654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.94  E-value=0.00052  Score=69.50  Aligned_cols=37  Identities=16%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      ..|+.|+|.||+||||||+|..|++++ +...||++.+
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~   44 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKIL-PVELISVDSA   44 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhC-CCcEEecccc
Confidence            457889999999999999999999998 9999998753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.0078  Score=55.97  Aligned_cols=97  Identities=12%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             CCCcEEEe---CCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCc---cCCccchHHHHHHHHHHHhccchHH
Q psy11031         56 AAKAFLIS---GYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGA---KLGHVILSLARMELANFYQNVTPVT  128 (520)
Q Consensus        56 ~~~G~ILD---GFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~---~~~r~d~e~i~~Rl~~Y~~~t~pvi  128 (520)
                      ...++||+   |.+...+....+..    ++.||+|+||.+++.+|+. +..   .....+.+.+..++..+.+...|  
T Consensus        93 ~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~--  166 (199)
T 3vaa_A           93 EFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAP--  166 (199)
T ss_dssp             TCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHH--
T ss_pred             hcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHH--
Confidence            35789999   88887777644433    6899999999999999996 221   11122355566777776665554  


Q ss_pred             HHhhhCCcEEEEeCCC-ChHHHHHHHHHHHHHHh
Q psy11031        129 DFFDQRGMLIAVNGER-NPVEVYADFRTAVLKIL  161 (520)
Q Consensus       129 ~~Y~~~~~l~~Ida~~-~~eeV~~~i~~~l~~~~  161 (520)
                       +|...  -+.||.+. +++++.++|.+.+...+
T Consensus       167 -~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          167 -FYTQA--QYIFNADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             -HHTTS--SEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred             -HHhhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence             56553  46788876 99999999999998765

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=96.93  E-value=0.0025  Score=68.61  Aligned_cols=158  Identities=13%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      ..+..|+|.|..||||+|++++|.+.+.  |+..++++.         ++..+.+   +.+               +..+
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~---------Pt~~E~~---~~y---------------l~R~   93 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR---------PSDEELE---RPP---------------QWRF   93 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS---------CCHHHHT---SCT---------------THHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC---------CChhhcc---CCh---------------hhhH
Confidence            5688999999999999999999999861  222233211         0111111   011               1112


Q ss_pred             HhccccCCCcEEEEeCC--------------C-----CCHHHHHHHHhhcCC---CCCEEEecCChhhhhc---cCCCCC
Q psy11031        301 MKKTKYTEADGIVIDGF--------------P-----REMSQLIDFENKYQI---HPPMILIDCSKLVLHK---GQIDNS  355 (520)
Q Consensus       301 l~~~~~~~~~G~ILDGF--------------P-----rt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~~r---~R~dD~  355 (520)
                      .. +.+..+.-+|.|++              +     +-++++..||..+..   +...|||+++.+...+   .|.+|-
T Consensus        94 ~~-~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p  172 (500)
T 3czp_A           94 WR-RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP  172 (500)
T ss_dssp             HH-HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred             HH-hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence            22 12223444555543              1     125677777776543   3457999999975432   222211


Q ss_pred             HH---------HHHHHHHHHHHHhHHHHHHhhhC-CCEEEEECCCC---HHHHHHHHHHHHHHHHH
Q psy11031        356 VS---------AFRRRLELFRERTLPMLRAMDVE-TRLTIVDGDTQ---LPQVREEFERVLKKIID  408 (520)
Q Consensus       356 ~e---------~~~~Rl~~f~~~~~~l~~~y~~~-~~l~~IDa~~~---~e~V~~~I~~~I~~~i~  408 (520)
                      ..         .-..++..|.+....++..-+.. ..+++|+|+..   ...|.+.|.+.|...+.
T Consensus       173 ~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~  238 (500)
T 3czp_A          173 QHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALA  238 (500)
T ss_dssp             ------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHH
Confidence            00         11245677777766666544322 36999999984   45666777777766664

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.89  E-value=0.00049  Score=70.57  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      +++|+|.||+||||||+|..|++.+ +...||++++
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l-~~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKF-NGEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-TEEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHc-CCceeccccc
Confidence            3689999999999999999999997 9999999877

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.85  E-value=0.00069  Score=68.73  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      ++.|+|.||+||||||+|..|++++ +...||++.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC-ccceeecCcc
Confidence            5789999999999999999999998 9999999865

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.84  E-value=0.015  Score=58.18  Aligned_cols=155  Identities=14%  Similarity=0.253  Sum_probs=85.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc---------chHHHHhhhhcCCcc-----
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG---------LNSRIKSSVSAGDFV-----  288 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~---------~g~~i~~~l~~G~~v-----  288 (520)
                      ..+..|+|+||   ||+|++++|.+.++.-..+++....|   .- ..+..         .-+.+...+.+|..+     
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR---~~-R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~  175 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR---PK-REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQY  175 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS---CC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeeccc---CC-CCccccCceeEecCCHHHHHHHHHCCCcEEEEEE
Confidence            34566888887   79999999999874334455544444   11 11111         223455555666544     


Q ss_pred             -------chHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh--ccCCCCCHHH
Q psy11031        289 -------NRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH--KGQIDNSVSA  358 (520)
Q Consensus       289 -------Pd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~--r~R~dD~~e~  358 (520)
                             |.+.+.++    +.     .++.+|||.=+..+.++   ..... .+.+|||..+. +.+.  ++|.  +++.
T Consensus       176 ~g~~YGt~~~~V~~~----~~-----~G~~vildid~~g~~~l---~~~~~-~pi~IfI~pps~~~L~~L~~R~--t~~~  240 (295)
T 1kjw_A          176 NSHLYGTSVQSVREV----AE-----QGKHCILDVSANAVRRL---QAAHL-HPIAIFIRPRSLENVLEINKRI--TEEQ  240 (295)
T ss_dssp             TTEEEEEEHHHHHHH----HH-----TTCEEEECCCTTHHHHH---HHTTC-CCEEEEECCSSHHHHHHHCTTS--CHHH
T ss_pred             cCcEeeeeHHHHHHH----Hh-----cCCeEEEEeCHHHHHHH---Hhccc-CCeEEEEECCCHHHHHHHHhcC--CHHH
Confidence                   33333333    34     46789999765544433   33222 34788888763 3322  2343  4567


Q ss_pred             HHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        359 FRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       359 ~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +++|++...+.-......|+    .+ |+.+ +.++.++++.+.|..
T Consensus       241 i~~rl~~a~~~e~~~~~~fd----~v-ivNd-~le~a~~~l~~ii~~  281 (295)
T 1kjw_A          241 ARKAFDRATKLEQEFTECFS----AI-VEGD-SFEEIYHKVKRVIED  281 (295)
T ss_dssp             HHHHHHHHHHHHHHHGGGCS----EE-ECCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCe----EE-EECc-CHHHHHHHHHHHHHh
Confidence            88888876432111112222    33 4444 788888888777753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.73  E-value=0.0028  Score=62.79  Aligned_cols=131  Identities=7%  Similarity=-0.011  Sum_probs=80.4

Q ss_pred             cCcccCcHHHHHHHHHHccCCCC---CC------CCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH---hcC
Q psy11031         13 DFPSHRNPLKMFNLFVSEEVKDF---SF------LSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD---KIK   80 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~~G~~~g---~l------VPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~---~~~   80 (520)
                      +++ |++.+ .++..+.... .|   ..      .+.+++.+++...+.......++|+||++.+..+...+.+   ...
T Consensus        28 ~~~-~i~~D-~~r~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~  104 (301)
T 1ltq_A           28 GFY-NINRD-DYRQSIMAHE-ERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYG  104 (301)
T ss_dssp             TEE-EECHH-HHHHHHTTSC-CCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTT
T ss_pred             CcE-Eeccc-HHHHHhccCC-cccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            455 88888 6666554321 12   12      2233344455555532134678999999999887755543   223


Q ss_pred             CcCEEEEEEcCHHHHHHHhh-hCccCCcc-chHHHHHHHHHHHhccchH-HHHhhhCCcEEEEeCCCChHHH
Q psy11031         81 TINGVILIAWRQSLLERQID-YGAKLGHV-ILSLARMELANFYQNVTPV-TDFFDQRGMLIAVNGERNPVEV  149 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pv-i~~Y~~~~~l~~Ida~~~~eeV  149 (520)
                      .+..+|+|+||.+++.+|+. |+.   |. .++.+.+|+..|+...... ..........+.+|.+++.+++
T Consensus       105 ~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~  173 (301)
T 1ltq_A          105 WKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM  173 (301)
T ss_dssp             CEEEEEECCCCHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCC
T ss_pred             CcEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCCcccc
Confidence            45689999999999999994 432   33 4788999999998764432 0001112246668887776554

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.70  E-value=0.00096  Score=65.13  Aligned_cols=36  Identities=14%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .+|.|.|++||||||+|+.|.+++ |+.++++|+-++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~-g~~~~~~~~~~~   37 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNY-SAVKYQLAGPIK   37 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-CEEECCTTHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc-CCeEEecChHHH
Confidence            479999999999999999999987 999999998887

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.67  E-value=0.0031  Score=57.67  Aligned_cols=102  Identities=14%  Similarity=-0.006  Sum_probs=60.0

Q ss_pred             CCCcEEEeCCCCCHHhHHH---HHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCcc----chHHHH-HHHHHHHhccch
Q psy11031         56 AAKAFLISGYPRNMRDVVE---YSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHV----ILSLAR-MELANFYQNVTP  126 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~---~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~----d~e~i~-~Rl~~Y~~~t~p  126 (520)
                      ...++|+||+++...+...   +......++++|+|+||.+++.+|+ .|+....|.    +.+... .++...++...+
T Consensus        76 ~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
T 2rhm_A           76 SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPP  155 (193)
T ss_dssp             TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCC
Confidence            3568999999943322222   3344567889999999999999999 454321232    111111 122222222222


Q ss_pred             HHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                         +|.+ ...+.||++.+.+++.++|.+.|...+
T Consensus       156 ---~~~~-~~~~~Idt~~~~~~~~~~i~~~i~~~l  186 (193)
T 2rhm_A          156 ---LPLG-GPLLTVDTTFPEQIDMNAIVQWVRQHL  186 (193)
T ss_dssp             ---CCCC-SCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred             ---ccCC-CCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence               2321 347899999987777777777776655

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.58  E-value=0.034  Score=49.46  Aligned_cols=80  Identities=15%  Similarity=0.044  Sum_probs=54.7

Q ss_pred             HHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHH
Q psy11031         74 EYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYA  151 (520)
Q Consensus        74 ~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~  151 (520)
                      .+...+..|+.+|+|++|.+++.+|+. |+..  ..+.+...+..+.|.+    ..+.|..  ..+.||++ +++++|.+
T Consensus        87 ~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~--~~~~~~~~~~~~~~~~----~~~~~~~--~~~~id~~~~~~~ev~~  158 (173)
T 3kb2_A           87 FIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE--YIEGKDIDSILELYRE----VMSNAGL--HTYSWDTGQWSSDEIAK  158 (173)
T ss_dssp             HHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS--CCCHHHHHHHHHHHHH----HHHTCSS--CEEEEETTTSCHHHHHH
T ss_pred             HHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc--chhhhHHHHHHHHHHH----HHhhcCC--CEEEEECCCCCHHHHHH
Confidence            333444579999999999999999994 4311  1122333333344433    4455653  47889999 59999999


Q ss_pred             HHHHHHHHHh
Q psy11031        152 DFRTAVLKIL  161 (520)
Q Consensus       152 ~i~~~l~~~~  161 (520)
                      +|.+.++...
T Consensus       159 ~I~~~~~~~~  168 (173)
T 3kb2_A          159 DIIFLVELEH  168 (173)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHhCCC
Confidence            9999998755

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.52  E-value=0.0013  Score=65.67  Aligned_cols=40  Identities=30%  Similarity=0.495  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr  262 (520)
                      ...|..++|.||||+|||++|+.|++.+ |.  ..++++++..
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~   74 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELES   74 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhh
Confidence            3456678888999999999999999985 54  5567777765

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.50  E-value=0.0014  Score=61.18  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      |+|+|++||||||+|++|+.+-....|+.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhcCCCeEEEec
Confidence            899999999999999999975112345555

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.50  E-value=0.0024  Score=59.68  Aligned_cols=93  Identities=5%  Similarity=0.029  Sum_probs=60.7

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHH-HHHhccchHHHHhhhC
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELA-NFYQNVTPVTDFFDQR  134 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~-~Y~~~t~pvi~~Y~~~  134 (520)
                      ...+|+||++--..+  .+   ...+|.+|+|+|+.++..+|+ .|+..  .   +.+..|+. .+........+.|.+.
T Consensus       110 ~~~vi~eg~~~~~~~--~~---~~~~d~~i~l~~~~~~~~~R~~~R~~~--~---e~~~~~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2qt1_A          110 IPILIIEGFLLFNYK--PL---DTIWNRSYFLTIPYEECKRRRSTRVYQ--P---PDSPGYFDGHVWPMYLKYRQEMQDI  179 (207)
T ss_dssp             CCEEEEECTTCTTCG--GG---TTTCSEEEEEECCHHHHHHHHHHSCCS--S---CCCTTHHHHTHHHHHHHHHHHGGGC
T ss_pred             CCEEEEeehHHcCcH--HH---HHhcCeeEEEECCHHHHHHHHHHcCCC--c---cchHHHHHHHHhHHHHHHHHHHHhc
Confidence            467999997643211  11   246799999999999988888 45421  1   11122332 2222223455666654


Q ss_pred             -CcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        135 -GMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       135 -~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                       ..++.||+++++++++++|.+.+..
T Consensus       180 ~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          180 TWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             SSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEecCCCCHHHHHHHHHHHHHh
Confidence             5678899999999999999988864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.41  E-value=0.0016  Score=61.33  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKL  260 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdL  260 (520)
                      ..+.+|.|+|++||||||+++.|+..+.    ...+++.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            3467899999999999999999998762    1566666543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.35  E-value=0.0052  Score=58.98  Aligned_cols=80  Identities=9%  Similarity=0.076  Sum_probs=53.1

Q ss_pred             CcCEEEEEEcCHHHHHHHh-hhCccCCccc----hHHHHHHHHHHHh-ccchH-HHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQI-DYGAKLGHVI----LSLARMELANFYQ-NVTPV-TDFFDQRGMLIAVNGERNPVEVYADF  153 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d----~e~i~~Rl~~Y~~-~t~pv-i~~Y~~~~~l~~Ida~~~~eeV~~~i  153 (520)
                      .||.+|+|++|.+++.+|+ .|+....+..    .+.+...+..|.+ .+.|+ +++| ..+.++.|||++++++|++++
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~~~i  227 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEVTKQ  227 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCHHHH
Confidence            7999999999999999998 4543211211    2222333333333 35665 3445 345689999999999999888


Q ss_pred             HHHHHHHh
Q psy11031        154 RTAVLKIL  161 (520)
Q Consensus       154 ~~~l~~~~  161 (520)
                      ..+++.+.
T Consensus       228 ~~i~~~i~  235 (241)
T 2ocp_A          228 EDLMREVN  235 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.31  E-value=0.017  Score=56.33  Aligned_cols=94  Identities=10%  Similarity=0.056  Sum_probs=63.0

Q ss_pred             CcEEEeCCCCCHHhHHHHHH---hcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh
Q psy11031         58 KAFLISGYPRNMRDVVEYSD---KIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ  133 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~---~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~  133 (520)
                      .++|+||.+....+...+..   ....++++|+|+||.+++.+|+. |+..   ...+.+.+....|.   .|. ..|..
T Consensus        73 ~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~---~~~~~l~~~~~~~e---~~~-~~~~~  145 (260)
T 3a4m_A           73 YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK---IPNEVIKKMYEKFD---EPG-KKYKW  145 (260)
T ss_dssp             SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCS---SCHHHHHHHHHHCC---CTT-SSCGG
T ss_pred             CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCC---CCHHHHHHHHHHhc---Ccc-ccCCC
Confidence            78999998877666544432   34568999999999999999994 5311   13455555444443   222 23432


Q ss_pred             CCcEEEEeCCC--ChHHHHHHHHHHHH
Q psy11031        134 RGMLIAVNGER--NPVEVYADFRTAVL  158 (520)
Q Consensus       134 ~~~l~~Ida~~--~~eeV~~~i~~~l~  158 (520)
                      ....++||++.  ++++|++.|.+.+.
T Consensus       146 ~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          146 DEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             GCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence            23467899997  88999888877663

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.25  E-value=0.0019  Score=67.55  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      +++|+|.||+||||||+|..|++++ +...||++.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~-~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH-TEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC-CCeEeecCc
Confidence            4679999999999999999999998 888999876

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.0023  Score=67.63  Aligned_cols=40  Identities=20%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      .+.|+-|++.||||+|||++|+.||... |+..+  +..+++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~~  253 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAPQLVQ  253 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCS
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEehhhhhh
Confidence            3457789999999999999999999986 77655  5555554

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.23  E-value=0.0037  Score=59.86  Aligned_cols=142  Identities=12%  Similarity=0.147  Sum_probs=84.6

Q ss_pred             cccCc-ccCcHHHHHHHHHHccCCCCCCCCHHHHHHH------------HHHHHhcCCCCCcEEEeCCCCC---------
Q psy11031         11 LLDFP-SHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV------------LMLEMKMSPAAKAFLISGYPRN---------   68 (520)
Q Consensus        11 ~~~~~-~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l------------l~~~l~~~~~~~G~ILDGFPRt---------   68 (520)
                      ++..| ..+.+|..+++++..+.  +. +.+. ...+            |...|.   ..+-+|.|=|--+         
T Consensus        35 ~~~ep~~~t~~g~~ir~~l~~~~--~~-~~~~-~~~llf~a~R~~~~~~I~paL~---~g~~VI~DRy~~S~~ayq~~~~  107 (216)
T 3tmk_A           35 LLKFPERSTRIGGLINEYLTDDS--FQ-LSDQ-AIHLLFSANRWEIVDKIKKDLL---EGKNIVMDRYVYSGVAYSAAKG  107 (216)
T ss_dssp             EEESSCTTSHHHHHHHHHHHCTT--SC-CCHH-HHHHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHTTC
T ss_pred             EEEecCCCChHHHHHHHHHHhcc--cC-CCHH-HHHHHHHHHHHHHHHHHHHHHH---cCCEEEEeccHhHHHHHHHhcC
Confidence            34456 47889999999998754  11 2222 1222            222222   1234555765422         


Q ss_pred             -----HHhHHHHHHhcCCcCEEEEE-EcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchH-HHHhhhCCcEEEEe
Q psy11031         69 -----MRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPV-TDFFDQRGMLIAVN  141 (520)
Q Consensus        69 -----~~QA~~~~~~~~~pd~VI~L-~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pv-i~~Y~~~~~l~~Id  141 (520)
                           ++....+...+..||++|+| ++|.+++.+|+.++.  .|.+.....+|+...+.....- .+++  ...++.||
T Consensus       108 l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~--dr~E~~~f~~rvr~~Y~~la~~~~~~~--~~~~~vID  183 (216)
T 3tmk_A          108 TNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD--ERYETVKFQEKVKQTFMKLLDKEIRKG--DESITIVD  183 (216)
T ss_dssp             CTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC--CTTCCHHHHHHHHHHHHHHHHHHHHTT--CCSEEEEE
T ss_pred             CCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc--ccccHHHHHHHHHHHHHHHHHhccccC--CCCEEEEe
Confidence                 22222222234589999999 999999988884321  2333334555655544443321 2212  24599999


Q ss_pred             -CCCChHHHHHHHHHHHHHHhcc
Q psy11031        142 -GERNPVEVYADFRTAVLKILNK  163 (520)
Q Consensus       142 -a~~~~eeV~~~i~~~l~~~~~~  163 (520)
                       |++++++|+++|.+.|...+..
T Consensus       184 ~a~~s~eeV~~~I~~~i~~~l~~  206 (216)
T 3tmk_A          184 VTNKGIQEVEALIWQIVEPVLST  206 (216)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhc
Confidence             9999999999999999988844

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.22  E-value=0.0025  Score=61.55  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=26.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      ...+.+|.|.||.||||||+++.|+..+ |..
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~~l-G~~   52 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIMELL-GQN   52 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHHHH-TGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh-chh
Confidence            3456789999999999999999999876 755

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0027  Score=67.20  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ...|+-|++.||||+|||++|+.||..+ |+..+  +.++++.
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~~~~v~~s~l~s  253 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATI-GANFIFSPASGIVD  253 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGTCC
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehhhhcc
Confidence            3456789999999999999999999986 77665  4445544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.14  E-value=0.003  Score=60.74  Aligned_cols=36  Identities=17%  Similarity=0.304  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKL  260 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdL  260 (520)
                      .+.-|+|.|+||+|||++|+.|++.+ +...+  ++.++
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~~~~~~~   75 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA-QVPFLAMAGAEF   75 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH-TCCEEEEETTTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHH
Confidence            35669999999999999999999986 65544  44443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0031  Score=66.64  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ...|+-|++.||||+|||++|+.||..+ |+..+  +..+++.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~~l~~  244 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGSEFVH  244 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGGGTCC
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecchhhc
Confidence            3456679999999999999999999986 77665  4445544

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.0027  Score=66.42  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ...|+-|++.||||+|||++|+.||... |+..+  +..+++.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~s  220 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSGAELVQ  220 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGGGGSC
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhh-CCCceEEEhHHhhc
Confidence            3456779999999999999999999986 77665  4445554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.08  E-value=0.0041  Score=62.06  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      .+..|+|.||||+|||++|+.|+... +...+  +..+++.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~~~l~~   87 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLT   87 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHT-TCEEEEECHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEhHHHHh
Confidence            45679999999999999999999986 66554  4446554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.06  E-value=0.0033  Score=60.77  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLL  261 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLl  261 (520)
                      +.-++|.|+||+||||+|+.|+..+ +..  .++..++.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~-~~~~~~i~~~~~~   82 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFV   82 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEECSCSST
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHc-CCCEEEEeHHHHH
Confidence            4559999999999999999999886 644  44444443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.06  E-value=0.0043  Score=60.68  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      .+.-++|.|+||+|||++|+.|++.+ +...+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~-~~~~~~   81 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATET-NATFIR   81 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHT-TCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEE
Confidence            45669999999999999999999987 776554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.04  E-value=0.0044  Score=61.07  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      .+..++|.||||+||||+|+.|++.+ +...  +++.++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~l~~   92 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC-SATFLNISAASLTS   92 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT-TCEEEEEESTTTSS
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEeeHHHHhh
Confidence            35679999999999999999999987 7544  45545543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.01  E-value=0.0033  Score=57.37  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC---C--CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP---N--WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~---g--~~~is~gdLlr  262 (520)
                      +..++|+|||||||||+++.|+..+.   |  ..+++..+++.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~   80 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF   80 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            56799999999999999999876531   2  34455555554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.99  E-value=0.013  Score=55.96  Aligned_cols=97  Identities=11%  Similarity=0.070  Sum_probs=61.0

Q ss_pred             CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCc-cchHHHHHHHH--HHHhccchHHHHh
Q psy11031         56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGH-VILSLARMELA--NFYQNVTPVTDFF  131 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r-~d~e~i~~Rl~--~Y~~~t~pvi~~Y  131 (520)
                      ...|+|+||+++..  +  ++   ...+.+|+|+||.+++.+|+ .+...-++ .+.+.+.+++.  .+......+..+|
T Consensus       134 ~~~~~v~~g~~~~~--~--~l---~~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~  206 (236)
T 1q3t_A          134 QQGGIVMDGRDIGT--V--VL---PQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLK  206 (236)
T ss_dssp             TTSCEEEECSSCSS--S--SG---GGCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCS
T ss_pred             ccCCEEEECCcchh--h--hc---cCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccc
Confidence            35689999998741  1  11   24589999999999988886 22111121 13344444444  3444444444455


Q ss_pred             hhCCcEEEEeCC-CChHHHHHHHHHHHHHH
Q psy11031        132 DQRGMLIAVNGE-RNPVEVYADFRTAVLKI  160 (520)
Q Consensus       132 ~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~  160 (520)
                      .... .+.||++ .+++++.++|.+.+...
T Consensus       207 ~~~d-~~vId~~~~s~eev~~~I~~~l~~~  235 (236)
T 1q3t_A          207 QAED-AVYLDTTGLNIQEVVEKIKAEAEKR  235 (236)
T ss_dssp             CCTT-CEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             ccCC-EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            4422 4678988 59999999999988653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.95  E-value=0.0039  Score=62.33  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCC-------Ceee-ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN-------WTQI-SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g-------~~~i-s~gdLlr  262 (520)
                      ...+.+|.|.|++||||||+|+.|++.+ +       ...+ +.++.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l-~~~g~~~~~~~iv~~D~f~~   75 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL-MEKYGGEKSIGYASIDDFYL   75 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH-HHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh-hhcCCCCceEEEeccccccC
Confidence            3457899999999999999999999876 3       3455 7777665

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.93  E-value=0.0024  Score=65.83  Aligned_cols=29  Identities=34%  Similarity=0.451  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      .+.|+|+|+|||||||+++.|++.+ ++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l-~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQII-NEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-HHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHh-CCCe
Confidence            4579999999999999999999986 7776

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.91  E-value=0.0052  Score=62.43  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLL  261 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLl  261 (520)
                      ...|.+|.|.|++||||||+|+.|+..+.      ....++++...
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            34578999999999999999999987641      24557776654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.87  E-value=0.011  Score=57.20  Aligned_cols=96  Identities=10%  Similarity=0.006  Sum_probs=58.5

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCc-cCCccchHHHHHHHHH-----HHhccchHHH
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGA-KLGHVILSLARMELAN-----FYQNVTPVTD  129 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~-~~~r~d~e~i~~Rl~~-----Y~~~t~pvi~  129 (520)
                      ...+|+||++--.+.  .+.+   .+|.+|+|+||.+++.+|+ .|.. ..++ +.+.+.+|+..     |.+.+.|.  
T Consensus       131 ~~~vIveG~~~~~~~--~~~~---~~d~vi~l~~~~e~~~~R~~~R~~~~rg~-~~e~i~~~~~~~~~~~~~~~i~~~--  202 (252)
T 1uj2_A          131 ADVVLFEGILAFYSQ--EVRD---LFQMKLFVDTDADTRLSRRVLRDISERGR-DLEQILSQYITFVKPAFEEFCLPT--  202 (252)
T ss_dssp             CSEEEEECTTTTSSH--HHHH---HCSEEEEEECCHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHTHHHHHHHHTGGG--
T ss_pred             CcEEEEeeeccccCH--HHHH---hcCeeEEEeCCHHHHHHHHHHHHHhhhCC-CHHHHHHHHHHhccHHHHHHhhhh--
Confidence            468999997753221  1222   2589999999999999888 3421 1122 34555555543     33333332  


Q ss_pred             HhhhCCcEE--EEeCCCChHHHHHHHHHHHHHHh
Q psy11031        130 FFDQRGMLI--AVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       130 ~Y~~~~~l~--~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                       +.....++  .||++.++++++++|.+.+...+
T Consensus       203 -~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~  235 (252)
T 1uj2_A          203 -KKYADVIIPRGADNLVAINLIVQHIQDILNGGP  235 (252)
T ss_dssp             -GGGCSEEEETGGGCHHHHHHHHHHHHHHHHC--
T ss_pred             -hhcCcEEEecCCCChhHHHHHHHHHHHHHccch
Confidence             22233343  35888999999999999887544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.86  E-value=0.004  Score=58.19  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+.+|.|+|++||||||+++.|+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.86  E-value=0.0059  Score=54.74  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +..++|.|+||+|||++++.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998863

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.85  E-value=0.0093  Score=55.99  Aligned_cols=70  Identities=7%  Similarity=0.000  Sum_probs=49.4

Q ss_pred             CcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhC-CcEEEEeCCC-ChHHHHHHHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR-GMLIAVNGER-NPVEVYADFRTAVL  158 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Ida~~-~~eeV~~~i~~~l~  158 (520)
                      .|+++|+|+||.+++.+|+.+.         ...+.-..|......+..+|... .-.+.||++. +++++.++|.+.+.
T Consensus       131 ~p~~vi~Ld~~~e~~~~R~~r~---------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~  201 (211)
T 1m7g_A          131 LPFVEVYVDVPVEVAEQRDPKG---------LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLD  201 (211)
T ss_dssp             CCEEEEEEECCHHHHHTSCTTC---------HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHhhhHH---------HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            6799999999999999996321         11122234444455555667532 2247899998 99999999999987


Q ss_pred             H
Q psy11031        159 K  159 (520)
Q Consensus       159 ~  159 (520)
                      .
T Consensus       202 ~  202 (211)
T 1m7g_A          202 T  202 (211)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.0041  Score=66.17  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ...|+-|++.||||+|||++|+.||... ++..+  +..+|+.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~-~~~fi~vs~s~L~s  281 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRT-DATFIRVIGSELVQ  281 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCC
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhcc-CCCeEEEEhHHhhc
Confidence            3567789999999999999999999986 77665  4555554

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0048  Score=65.01  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ...|+-|++.||||+|||++|+.||... ++..+  +..+++.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~fi~v~~s~l~s  254 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQT-SATFLRIVGSELIQ  254 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHHH-TCEEEEEESGGGCC
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHHh-CCCEEEEEHHHhhh
Confidence            3456779999999999999999999986 77665  4445554

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.80  E-value=0.0058  Score=61.34  Aligned_cols=37  Identities=14%  Similarity=0.194  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCC-------CeeeehhhH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN-------WTQISLGKL  260 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g-------~~~is~gdL  260 (520)
                      ..+.+|.|+|++||||||+++.|+..+ +       +..++++..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL-SRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeEEEEecCCc
Confidence            456789999999999999999999865 4       455566654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.80  E-value=0.0067  Score=59.94  Aligned_cols=29  Identities=28%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      -++|+|||||||||+++.|+..+ +...+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~-~~~~i~   74 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANES-GLNFIS   74 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHT-TCEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHc-CCCEEE
Confidence            39999999999999999999986 654443

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.80  E-value=0.015  Score=55.85  Aligned_cols=133  Identities=6%  Similarity=-0.003  Sum_probs=69.9

Q ss_pred             ccCcccCcHHHHHHHHHHccCCCCCCCCHHHHH------------HHHHHHHhcCCCCCcEEEeCCC----------CC-
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT------------EVLMLEMKMSPAAKAFLISGYP----------RN-   68 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~------------~ll~~~l~~~~~~~G~ILDGFP----------Rt-   68 (520)
                      ...|..+.+|..+++++....   . +......            ++|...+.   ..+.+|.|=|.          |. 
T Consensus        57 treP~~t~~g~~ir~~l~~~~---~-~~~~~e~llf~a~R~~~~~~~I~paL~---~g~~VI~DRy~~S~~Ayq~~~~g~  129 (223)
T 3ld9_A           57 TREPGGTLLNESVRNLLFKAQ---G-LDSLSELLFFIAMRREHFVKIIKPSLM---QKKIVICDRFIDSTIAYQGYGQGI  129 (223)
T ss_dssp             EESSCSSHHHHHHHHHHHTCS---S-CCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCC
T ss_pred             eeCCCCChHHHHHHHHHhCCC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCeEEEccchhhHHHhccccCCc
Confidence            346777889999999998633   2 3332221            11122222   12345667655          22 


Q ss_pred             -HHhHHHHHHhc--CCcCEEEEEEcCHHHHHHHhhhCccCCccch--HHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC
Q psy11031         69 -MRDVVEYSDKI--KTINGVILIAWRQSLLERQIDYGAKLGHVIL--SLARMELANFYQNVTPVTDFFDQRGMLIAVNGE  143 (520)
Q Consensus        69 -~~QA~~~~~~~--~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~--e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~  143 (520)
                       .+-...+....  ..||++|+|++|.++..+|+.+    .|.+.  ....+|+...+..   +.+.|.  ..++.|||+
T Consensus       130 ~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~r----dr~E~~~~e~~~rv~~~y~~---la~~~~--~~~~vIDa~  200 (223)
T 3ld9_A          130 DCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCK----NGYEFADMEFYYRVRDGFYD---IAKKNP--HRCHVITDK  200 (223)
T ss_dssp             CHHHHHHHHHHHCSSCCSEEEEEECC--------------------CHHHHHHHHHHHHH---HHHHCT--TTEEEEESS
T ss_pred             cHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhcc----CccccchHHHHHHHHHHHHH---HHHHCC--CCEEEEcCC
Confidence             11111111111  4799999999999999999821    23221  2344444433322   344454  348999999


Q ss_pred             CChHHHHHHHHHHHHHHh
Q psy11031        144 RNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       144 ~~~eeV~~~i~~~l~~~~  161 (520)
                      +++++| ++|.+.|...+
T Consensus       201 ~sieeV-~~I~~~l~~~l  217 (223)
T 3ld9_A          201 SETYDI-DDINFVHLEVI  217 (223)
T ss_dssp             CSSSCC-CHHHHHHHHHH
T ss_pred             CCHHHH-HHHHHHHHHHH
Confidence            999999 99999998876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.79  E-value=0.0055  Score=62.63  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLL  261 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLl  261 (520)
                      +..|+|.||||+|||++|+.|++.+ +...+  ++.++.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~   88 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLT   88 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhc
Confidence            4569999999999999999999986 76555  444443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.77  E-value=0.005  Score=65.25  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG  258 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g  258 (520)
                      +..|+++||||+||||+|+.|++.+ ++.+++++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHc-CCCceeec
Confidence            4569999999999999999999997 88877664

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.75  E-value=0.0071  Score=60.82  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      .+.-|+|.||||+|||++|+.|++.. +...  +++.+++.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~v~~~~l~~   89 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVS   89 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH-TCEEEEEEHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH-CCCEEEEchHHHhh
Confidence            35679999999999999999999985 6554  45556554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.75  E-value=0.066  Score=49.74  Aligned_cols=93  Identities=11%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcC-EEEEEE-cCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTIN-GVILIA-WRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ  133 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd-~VI~L~-~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~  133 (520)
                      .+++|+|+.|....+.   .+.....+ .+|+|+ +|.+++.+|+. |+    +.+++.+.+|+..+.+...+.  |...
T Consensus       103 g~~vi~d~~~~~~~~l---~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~----~~~~~~i~~rl~~~~~~~~~~--~~~~  173 (204)
T 2qor_A          103 GKICLFEMNINGVKQL---KESKHIQDGIYIFVKPPSIDILLGRLKNRN----TEKPEEINKRMQELTREMDEA--DKVG  173 (204)
T ss_dssp             TCEEEEECCHHHHHHH---HHCSSCSCCEEEEEECSCHHHHHHHHHTCT----TSCHHHHHHHHHHHHHHHHHH--HHHT
T ss_pred             CCeEEEEECHHHHHHH---HHhcCCCCeEEEEEcCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHh--hhcc
Confidence            5689999988766554   22221113 789998 99999999994 43    335678899999887655442  2222


Q ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        134 RGMLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       134 ~~~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                      .. ++.+|.  ++++++++|.++|...+
T Consensus       174 ~d-~vi~n~--~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          174 FN-YFIVND--DLARTYAELREYLLGSY  198 (204)
T ss_dssp             CS-EEEECS--SHHHHHHHHHHHHHHHC
T ss_pred             Cc-EEEECc--CHHHHHHHHHHHHHHHh
Confidence            22 344454  89999999999998765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.64  E-value=0.0093  Score=55.95  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      .+..++|.|+||+||||+++.+++.+    ..+.++++.++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~   93 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS   93 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            46789999999999999999998753    1346677766654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.64  E-value=0.0064  Score=59.31  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ..+..++|.|+||+|||++|+.|++.. +...+.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~   94 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES-NFPFIK   94 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH-TCSEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh-CCCEEE
Confidence            446679999999999999999999986 765543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.63  E-value=0.17  Score=45.37  Aligned_cols=89  Identities=12%  Similarity=0.068  Sum_probs=56.8

Q ss_pred             CCcEEEe-CCCCCHHhHHHHHHhcCCcC-EEEEEEcCHHHHHHHhh-hCccCCcc-chHHHHHHHHHHHhccchHHHHhh
Q psy11031         57 AKAFLIS-GYPRNMRDVVEYSDKIKTIN-GVILIAWRQSLLERQID-YGAKLGHV-ILSLARMELANFYQNVTPVTDFFD  132 (520)
Q Consensus        57 ~~G~ILD-GFPRt~~QA~~~~~~~~~pd-~VI~L~~pd~~l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~  132 (520)
                      ..++|+| |+++. .+. .+.... .++ .+|+|+||.+++.+|+. |+.   +. +.+.+...+..|.    ++  +|.
T Consensus        80 ~~~~vi~~~~~~~-~~~-~~l~~~-~~~~~vv~l~~~~e~~~~R~~~R~~---~~~~~~~~~~~~~~~~----~~--~~~  147 (175)
T 1knq_A           80 NKVSLIVCSALKK-HYR-DLLREG-NPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQ----EP--GAD  147 (175)
T ss_dssp             CSEEEEECCCCSH-HHH-HHHHTT-CTTEEEEEEECCHHHHHHHHHTSTT---CCCCHHHHHHHHHHCC----CC--CTT
T ss_pred             CCcEEEEeCchHH-HHH-HHHHhc-CCCEEEEEEECCHHHHHHHHHhccC---CCCchHHHHHHHHhhh----Cc--ccC
Confidence            4578998 77653 222 233332 246 79999999999999994 431   22 2334444443332    11  244


Q ss_pred             hCCcEEEEeCCCChHHHHHHHHHHHH
Q psy11031        133 QRGMLIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus       133 ~~~~l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                      +. -.+.||++.+++++.++|.+.+.
T Consensus       148 ~~-~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          148 ET-DVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CT-TEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CC-CeEEEeCCCCHHHHHHHHHHHHh
Confidence            33 37889999999999999988774

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.57  E-value=0.0094  Score=56.55  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      ....|+|.|++||||||+|..|+++. + ..|+.+.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g-~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG-H-RLIADDR   66 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT-C-EEEESSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC-C-eEEecch
Confidence            45779999999999999999999885 4 7777763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.57  E-value=0.009  Score=57.54  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr  262 (520)
                      +-++|+|||||||||+++.|+... +.  ..++..++..
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~~~~~   87 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVE   87 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHHHHHH
Confidence            349999999999999999999875 44  4444445444

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.56  E-value=0.087  Score=49.25  Aligned_cols=90  Identities=11%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      .++++.|+|...+..  |.   ..+|.+|+|+||.+++.+|+. |+.    .+.+.+.+|+...    .+...++.... 
T Consensus       107 ~~~vi~~~~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~~----~~~~~~~~~~~~~----~~~~~~~~~ad-  172 (218)
T 1vht_A          107 SPYVLWVVPLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRDD----VTREHVEQILAAQ----ATREARLAVAD-  172 (218)
T ss_dssp             SSEEEEECTTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHHT----CCHHHHHHHHHHS----CCHHHHHHHCS-
T ss_pred             CCEEEEEeeeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcCC----CCHHHHHHHHHhc----CChHHHHHhCC-
Confidence            467777778766553  22   257999999999999999984 421    1344566666541    23334443333 


Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHhc
Q psy11031        137 LIAVNGERNPVEVYADFRTAVLKILN  162 (520)
Q Consensus       137 l~~Ida~~~~eeV~~~i~~~l~~~~~  162 (520)
                       +.||++.+++++.++|.+.+...+.
T Consensus       173 -~vId~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          173 -DVIDNNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             -EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             -EEEECCCCHHHHHHHHHHHHHHHHH
Confidence             5789999999999999999987663

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.56  E-value=0.15  Score=47.09  Aligned_cols=89  Identities=6%  Similarity=-0.011  Sum_probs=61.2

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG  135 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~  135 (520)
                      ..++|+|| |-..+.-  +.   ...|.||+|+||.+++.+|+. |.   ++ +.+.+.+|+..    ..+..++|+...
T Consensus       105 ~~~vv~~~-~~l~e~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~---~~-~~e~~~~r~~~----q~~~~~~~~~ad  170 (206)
T 1jjv_A          105 APYTLFVV-PLLIENK--LT---ALCDRILVVDVSPQTQLARSAQRD---NN-NFEQIQRIMNS----QVSQQERLKWAD  170 (206)
T ss_dssp             SSEEEEEC-TTTTTTT--CG---GGCSEEEEEECCHHHHHHHHC---------CHHHHHHHHHH----SCCHHHHHHHCS
T ss_pred             CCEEEEEe-chhhhcC--cH---hhCCEEEEEECCHHHHHHHHHHcC---CC-CHHHHHHHHHh----cCChHHHHHhCC
Confidence            45788898 6433321  21   246899999999999999993 42   22 35667777765    245666676554


Q ss_pred             cEEEEeCCCChH----HHHHHHHHHHHHHh
Q psy11031        136 MLIAVNGERNPV----EVYADFRTAVLKIL  161 (520)
Q Consensus       136 ~l~~Ida~~~~e----eV~~~i~~~l~~~~  161 (520)
                        +.||.+.+++    ++.++|.+.+...+
T Consensus       171 --~vIdn~~~~~~~~~~~~~~i~~~~~~~~  198 (206)
T 1jjv_A          171 --DVINNDAELAQNLPHLQQKVLELHQFYL  198 (206)
T ss_dssp             --EEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --EEEECCCCccccHHHHHHHHHHHHHHHH
Confidence              5688888999    99999999887654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.55  E-value=0.0047  Score=57.76  Aligned_cols=71  Identities=20%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             CCEEEecCChh-hh---hccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        335 PPMILIDCSKL-VL---HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       335 ~~VI~Ld~~~~-~~---~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                      +.+++|+-|.. .+   -+.|..++++.+.+|+....... .+ .++......+.++ + +.++.++++.+.|...+.+
T Consensus       117 ~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~-~~-a~~~~~~D~iivn-d-~le~a~~~l~~ii~~~~~~  191 (198)
T 1lvg_A          117 PIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM-ES-SKEPGLFDLVIIN-D-DLDKAYATLKQALSEEIKK  191 (198)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT-TG-GGSTTTCSEEEEC-S-SHHHHHHHHHHHTHHHHHH
T ss_pred             cEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HH-hhccCCceEEEEC-C-CHHHHHHHHHHHHHHHhhh
Confidence            44567775542 22   12455568899999988766542 11 1111112233333 3 6888999988888776533

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.53  E-value=0.0068  Score=56.02  Aligned_cols=23  Identities=22%  Similarity=0.588  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++.|+|++||||||+++.|+..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999876

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.52  E-value=0.011  Score=54.64  Aligned_cols=38  Identities=13%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      +..++|.|+||+||||+|+.|+...    ..+.++++.+++.
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            3679999999999999999998743    1334456665554

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.46  E-value=0.0064  Score=65.61  Aligned_cols=30  Identities=7%  Similarity=0.086  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      ...+..|+|.|.+||||||+++.|++++ +.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L-~~  421 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTF-LQ  421 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH-TT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHH-HH
Confidence            3456899999999999999999999997 65

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=95.41  E-value=0.031  Score=55.62  Aligned_cols=146  Identities=12%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      ..+.+|++.|..||||+++.++|.+.+ +=..+.+-.+        ..-+. .+..+.++               -....
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~l-dPRg~~V~a~--------~~Pt~-eE~~~~yl---------------wR~~~  127 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAM-DPQGVQLTAF--------KAPTD-EEKSHDFL---------------WRIEK  127 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHS-CGGGEEEEEC--------CSCCH-HHHTSCTT---------------HHHHT
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhc-CcCceEEEEC--------CCCCh-hhhcCCHH---------------HHHHH
Confidence            368899999999999999999999976 3333322111        00000 01111111               11111


Q ss_pred             ccccCCCcEEEEeCC-------------------CCCHHHHHHHHhhcCCCCCE---EEecCChhhhh-c--cCCC----
Q psy11031        303 KTKYTEADGIVIDGF-------------------PREMSQLIDFENKYQIHPPM---ILIDCSKLVLH-K--GQID----  353 (520)
Q Consensus       303 ~~~~~~~~G~ILDGF-------------------Prt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~-r--~R~d----  353 (520)
                       +.+..+.-.|.|+.                   -+-++++..||..+.....+   |||+++.+... |  .|.+    
T Consensus       128 -~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k  206 (289)
T 3rhf_A          128 -QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSK  206 (289)
T ss_dssp             -TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGG
T ss_pred             -hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcc
Confidence             12333444555542                   13366788999888766654   78999986432 1  1111    


Q ss_pred             ---CCHHHH--HHHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHH
Q psy11031        354 ---NSVSAF--RRRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQ  394 (520)
Q Consensus       354 ---D~~e~~--~~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~  394 (520)
                         -++.-+  +++++.|.+....++..-+. ..-+++|+|+.-...
T Consensus       207 ~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~a  253 (289)
T 3rhf_A          207 HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYA  253 (289)
T ss_dssp             GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHH
Confidence               133333  34568888888887776543 246999999876443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.39  E-value=0.0078  Score=59.17  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKL  260 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdL  260 (520)
                      .+..++|.|+||+|||++|+.|++.+ +...  +++.++
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~   86 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKF   86 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhc
Confidence            35569999999999999999999986 6544  454444

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.36  E-value=0.011  Score=60.64  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      +.-|+|.||||+|||++|+.|++.+ +...+  ++.+++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~-~~~~~~v~~~~l~~  122 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVS  122 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEEEHHHHHS
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh-CCCEEEeeHHHHhh
Confidence            4569999999999999999999986 76554  5556654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.35  E-value=0.012  Score=59.41  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr  262 (520)
                      +.-|+|.||||+|||++|+.+++...+  +..++..+++.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~   84 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS   84 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence            467999999999999999999987423  34455555544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.32  E-value=0.01  Score=60.88  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      +..|+|.|+||+|||++|+.|++.+ +...+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l-~~~~~~  102 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL-DIPIAI  102 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh-CCCEEE
Confidence            4559999999999999999999987 765543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.30  E-value=0.012  Score=60.16  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      .+.-|+|.|+||+|||++|+.|++.. +...+  ++.+++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~i~~~~l~~  155 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS-GATFFSISASSLTS  155 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT-TCEEEEEEGGGGCC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc-CCeEEEEehHHhhc
Confidence            45679999999999999999999986 76554  4545443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.17  E-value=0.053  Score=48.92  Aligned_cols=126  Identities=7%  Similarity=-0.050  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHH---HHHhcCCcCEEEEEEcCHHH
Q psy11031         20 PLKMFNLFVSEEVKDFSFLSS--KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE---YSDKIKTINGVILIAWRQSL   94 (520)
Q Consensus        20 ~G~~l~~~i~~G~~~g~lVPd--elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~---~~~~~~~pd~VI~L~~pd~~   94 (520)
                      .|..+++++..|...+...+.  +.+.+++...+..  ...-+|+|+...+......   +......+-.+|+|+||.++
T Consensus        40 ~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~  117 (183)
T 2vli_A           40 MGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNV  117 (183)
T ss_dssp             HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHH
T ss_pred             hHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHH
Confidence            477777666533321111121  3455666665542  2344788977655432222   22222223366999999999


Q ss_pred             HHHHhh-hCccCCcc-chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031         95 LERQID-YGAKLGHV-ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTAVLKIL  161 (520)
Q Consensus        95 l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~~  161 (520)
                      +.+|+. |+   .|. ..    .++..+.+...++ + |   . + .||++ .+++++.++|.+.+...+
T Consensus       118 ~~~R~~~R~---~r~~~~----~~~~~~~~~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          118 VLERLRRDG---QPQVNV----GTVEDRLNELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             HHHHHHTC-------CCH----HHHHHHHHHHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhcc---ccchhH----HHHHHHHHhhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence            999994 43   122 22    3444444444454 3 3   2 3 89998 899999999999886544

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.16  E-value=0.01  Score=56.36  Aligned_cols=165  Identities=13%  Similarity=0.221  Sum_probs=79.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCCc---c-hHHHHh------hhhcC----Cc
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGEG---L-NSRIKS------SVSAG----DF  287 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t~---~-g~~i~~------~l~~G----~~  287 (520)
                      ....++.|+||.||||||+++.|+..++|-..+.. ++..... .....+..   . -.....      ++..+    ..
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   99 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSV-SCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF   99 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECC-CEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEee-cccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence            34678999999999999999999987643333311 1100000 00000000   0 001111      11111    00


Q ss_pred             --cchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCCh-hhhh---ccCCCCCHHHHH
Q psy11031        288 --VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSK-LVLH---KGQIDNSVSAFR  360 (520)
Q Consensus       288 --vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~  360 (520)
                        .|...    +.+.+.     ...-+++|   .++.-.+.....+. ..+..+++.-++ ..+.   +.+..++++.+.
T Consensus       100 ~g~~~~~----i~~~l~-----~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~  167 (218)
T 1z6g_A          100 YGTLKSE----YDKAKE-----QNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ  167 (218)
T ss_dssp             EEEEHHH----HHHHHH-----TTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCCcHHH----HHHHHh-----CCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence              22222    233333     12345666   45554554444431 122456665443 3321   345556888999


Q ss_pred             HHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        361 RRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       361 ~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +|+........ + .+- ..-..+.++  .+.++.+..+...|..
T Consensus       168 ~~l~~~~~~~~-~-~h~-~~~d~iiv~--~~~~ea~~~~~~ii~~  207 (218)
T 1z6g_A          168 KRMEQLNIELH-E-ANL-LNFNLSIIN--DDLTLTYQQLKNYLLN  207 (218)
T ss_dssp             HHHHHHHHHHH-H-HTT-SCCSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-h-hcc-cCCCEEEEC--CCHHHHHHHHHHHHHH
Confidence            99887765543 1 110 111233332  3688888887777765

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.15  E-value=0.0089  Score=53.60  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +..++|.|+||+|||++|+.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.14  E-value=0.0045  Score=60.09  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLL  261 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLl  261 (520)
                      +.-++|.|+||+|||++|+.|++.. +...+  ++.++.
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~~   81 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEA-HVPFFSMGGSSFI   81 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHH-TCCCCCCCSCTTT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh-CCCEEEechHHHH
Confidence            3448899999999999999999975 55444  444443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.13  E-value=0.014  Score=58.41  Aligned_cols=39  Identities=13%  Similarity=0.115  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      .+..++|.|+||+||||+|+.|+..+    ..+.++++.++..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~   78 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   78 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence            34569999999999999999998742    2567778777655

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.13  E-value=0.015  Score=56.95  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr  262 (520)
                      +-++|+|+|||||||+++.|+... +.  ..++..++..
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~~~~~  111 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVE  111 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHH
T ss_pred             CeEEEECCCcChHHHHHHHHHHHc-CCCEEEecHHHHHH
Confidence            349999999999999999999875 44  4444445544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.12  E-value=0.012  Score=55.00  Aligned_cols=27  Identities=19%  Similarity=0.151  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+||.||||||+++.|+..+
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            346789999999999999999999876

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.07  E-value=0.34  Score=54.30  Aligned_cols=161  Identities=14%  Similarity=0.246  Sum_probs=84.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc---ccCCc-----chHHHHhhhhcCCccch---
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE---DDGEG-----LNSRIKSSVSAGDFVNR---  290 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~---~~~t~-----~g~~i~~~l~~G~~vPd---  290 (520)
                      ...+..|+|+||   ||+|++++|.+.++.-..+++....|   .-.   ..|..     .-+.+...+.+|+.+--   
T Consensus       528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR---~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~  601 (721)
T 2xkx_A          528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR---PKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQY  601 (721)
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHHhCccceeeccccccc---CCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEE
Confidence            345567888888   49999999998864334445544444   111   11111     12344555555554321   


Q ss_pred             --H---HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh--ccCCCCCHHHHHHH
Q psy11031        291 --D---VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH--KGQIDNSVSAFRRR  362 (520)
Q Consensus       291 --~---lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~--r~R~dD~~e~~~~R  362 (520)
                        .   +-.+-+++.+.     .++.+|||.=   ..-+..+..... .+.+||+..+. +.+.  ++|.  +++.+++|
T Consensus       602 ~g~~YGt~~~~v~~~~~-----~g~~~ildi~---~~~~~~l~~~~~-~p~~ifi~pps~~~L~~l~~R~--t~~~~~~r  670 (721)
T 2xkx_A          602 NSHLYGTSVQSVREVAE-----QGKHCILDVS---ANAVRRLQAAHL-HPIAIFIRPRSLENVLEINKRI--TEEQARKA  670 (721)
T ss_pred             CCccceeeHHHHHHHHH-----CCCcEEEeCC---HHHHHHHHhccc-CCEEEEEeCCcHHHHHHHhccC--CHHHHHHH
Confidence              0   11222333344     4678999984   333444443222 23788888654 3332  2343  34567888


Q ss_pred             HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ++.-.+.-.....+|+    . +|+.+ +.++.++++.++|..
T Consensus       671 l~~a~~~e~~~~~~fd----~-vi~Nd-~l~~a~~~l~~~i~~  707 (721)
T 2xkx_A          671 FDRATKLEQEFTECFS----A-IVEGD-SFEEIYHKVKRVIED  707 (721)
T ss_pred             HHHHHHHHHhccccCc----E-EEECc-CHHHHHHHHHHHHHh
Confidence            8765322111112232    2 35544 788888888777754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.02  E-value=0.015  Score=58.25  Aligned_cols=33  Identities=9%  Similarity=0.055  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      .+..++|.|+||+|||++|+.|++.. +...+.+
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~   86 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEM-SANIKTT   86 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHT-TCCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEe
Confidence            34569999999999999999999986 7665544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.01  E-value=0.012  Score=59.65  Aligned_cols=28  Identities=18%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      +..++|+|||||||||+++.|+..+ +..
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l-~~~   78 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASEL-QTN   78 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH-TCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh-CCC
Confidence            4669999999999999999999886 654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.97  E-value=0.016  Score=65.83  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ..|+-|+|.||||+|||++|+.||... |...+  +..+++.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~el-g~~~~~v~~~~l~s  276 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS  276 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTT-TCEEEEEEHHHHHS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHh-CCeEEEEEhHHhhc
Confidence            457789999999999999999999987 87665  4446654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.93  E-value=0.1  Score=46.51  Aligned_cols=92  Identities=8%  Similarity=0.075  Sum_probs=58.6

Q ss_pred             CCcEEEe-C--CCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh--hCccCCccc--hHHHHHHHHHHHhccchHHH
Q psy11031         57 AKAFLIS-G--YPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID--YGAKLGHVI--LSLARMELANFYQNVTPVTD  129 (520)
Q Consensus        57 ~~G~ILD-G--FPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~--rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~  129 (520)
                      ..++||+ |  ++....... ++.   .++.+|+|+||.+++.+|+.  .+.. .|..  .+...+|+..+.....+   
T Consensus        70 ~~~~vi~~g~~~~~~~~~~~-~l~---~~~~~i~l~~~~e~~~~R~~~~~r~~-~r~~~~~~~~~~~~~~~~~~~~~---  141 (173)
T 1e6c_A           70 TPNRVVATGGGMVLLEQNRQ-FMR---AHGTVVYLFAPAEELALRLQASLQAH-QRPTLTGRPIAEEMEAVLREREA---  141 (173)
T ss_dssp             CSSEEEECCTTGGGSHHHHH-HHH---HHSEEEEEECCHHHHHHHHHHHHCSC-CCCCTTHHHHHHHHHHHHHHHHH---
T ss_pred             cCCeEEECCCcEEeCHHHHH-HHH---cCCeEEEEECCHHHHHHHHhhccCCC-CCCcCCCCCHHHHHHHHHHHHHH---
Confidence            3467776 5  333333332 222   26899999999999999996  4311 2332  23445667776655544   


Q ss_pred             HhhhCCcEEEEeCC-CChHHHHHHHHHHHH
Q psy11031        130 FFDQRGMLIAVNGE-RNPVEVYADFRTAVL  158 (520)
Q Consensus       130 ~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~  158 (520)
                      +|...  .+.||++ .+++++.++|.+.+.
T Consensus       142 ~~~~~--~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          142 LYQDV--AHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             HHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred             HHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence            45442  3578988 899999999988763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.92  E-value=0.015  Score=60.34  Aligned_cols=34  Identities=12%  Similarity=0.036  Sum_probs=28.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ...+..|+|.|||||||||+++.|+..+ +...++
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~-~g~~~~  199 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC-GGKALN  199 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH-CCEEEC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc-CCcEEE
Confidence            3456789999999999999999999886 666555

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.90  E-value=0.0065  Score=53.64  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCC-CeeeehhhH
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPN-WTQISLGKL  260 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g-~~~is~gdL  260 (520)
                      -|+|.|+||+|||++|+.|++.. + +..+++.++
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~-~~~~~~~~~~~   62 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNG-TPWVSPARVEY   62 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTT-SCEECCSSTTH
T ss_pred             cEEEECCCCccHHHHHHHHHHhC-CCeEEechhhC
Confidence            48999999999999999998765 4 344444444

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.87  E-value=0.017  Score=58.34  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|+|++||||||+++.|+..+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            457899999999999999999998753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.83  E-value=0.1  Score=50.88  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCcEEE---eCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhh-CccCCcc----
Q psy11031         37 FLSSKTVTEVLMLEMKMSPAAKAFLI---SGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDY-GAKLGHV----  108 (520)
Q Consensus        37 lVPdelv~~ll~~~l~~~~~~~G~IL---DGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~r-g~~~~r~----  108 (520)
                      ....++..+++.+.+..   ..++||   .|++....+. .++..    +.||+|++|.+++.+|+.. +.. .|.    
T Consensus       102 ~~fr~~e~~~l~~l~~~---~~~~Via~GgG~v~~~~~~-~~l~~----~~vV~L~a~~e~l~~Rl~~~~~~-~Rpl~~~  172 (250)
T 3nwj_A          102 SVFREKETEALKKLSLM---YHQVVVSTGGGAVIRPINW-KYMHK----GISIWLDVPLEALAHRIAAVGTG-SRPLLHD  172 (250)
T ss_dssp             HHHHHHHHHHHHHHHHH---CSSEEEECCGGGGGSHHHH-HHHTT----SEEEEEECCHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHhh---cCCcEEecCCCeecCHHHH-HHHhC----CcEEEEECCHHHHHHHHhhcCCC-CCCcccC
Confidence            33334444455444332   134555   5788777766 33332    7899999999999999942 211 222    


Q ss_pred             ---c--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEe-----------CCCChHHHHHHHHHHHHHHhcc
Q psy11031        109 ---I--LSLARMELANFYQNVTPVTDFFDQRGMLIAVN-----------GERNPVEVYADFRTAVLKILNK  163 (520)
Q Consensus       109 ---d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Id-----------a~~~~eeV~~~i~~~l~~~~~~  163 (520)
                         +  .+....++....++..|   +|.....++.+|           .+.++++|.+.|.+.+...+..
T Consensus       173 ~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~  240 (250)
T 3nwj_A          173 DESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK  240 (250)
T ss_dssp             -----CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence               1  12344566666666665   476665566544           4589999999999999887743

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.81  E-value=0.02  Score=59.06  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      +.-|+|.|+||+|||++|+.|++.. +...+.+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~-~~~~~~v  179 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAES-NATFFNI  179 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT-TCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhh-cCcEEEe
Confidence            5679999999999999999999986 7765533

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.76  E-value=0.02  Score=61.61  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      .++.++|.||||+||||+|+.|++.+ |+..+.+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l-~~~~i~i  108 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQ  108 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEE
Confidence            35679999999999999999999997 8877644

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.75  E-value=0.017  Score=50.99  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .-|+|.|+||+|||++|+.|++.
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            34899999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.75  E-value=0.019  Score=53.28  Aligned_cols=26  Identities=12%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        44 ~~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           44 IHHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.72  E-value=0.067  Score=48.39  Aligned_cols=129  Identities=9%  Similarity=0.072  Sum_probs=69.3

Q ss_pred             cCcccCcHHHHHHHHHH---ccCCC-CCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEE
Q psy11031         13 DFPSHRNPLKMFNLFVS---EEVKD-FSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI   88 (520)
Q Consensus        13 ~~~~h~s~G~~l~~~i~---~G~~~-g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L   88 (520)
                      +++ +++++..++..--   .|... ..++..+.+.+.+...+..    .|+|+|+..+..-..       ..++.||+|
T Consensus        36 ~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~vv~~~~~~~~~~-------~~~~~vi~L  103 (180)
T 3iij_A           36 GLK-YINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMRE----GGVIVDYHGCDFFPE-------RWFHIVFVL  103 (180)
T ss_dssp             CCE-EEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHH----CCEEEECSCCTTSCG-------GGCSEEEEE
T ss_pred             CCe-EEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhc----CCEEEEechhhhcch-------hcCCEEEEE
Confidence            455 6777776655410   01111 1134566666666665543    588998776543222       127899999


Q ss_pred             EcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHH
Q psy11031         89 AWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus        89 ~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                      +||.+++.+|+. |+..........-..++....+   .-...|.. ..++.+++ .++++|...+..++.
T Consensus       104 ~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~-~~~i~~~~-~~~~ev~~~v~~i~~  169 (180)
T 3iij_A          104 RTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYE---EATASYKE-EIVHQLPS-NKPEELENNVDQILK  169 (180)
T ss_dssp             ECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHH---HHHHHSCG-GGEEEEEC-SSHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH---HHHHHcCC-CeEEEcCC-CCHHHHHHHHHHHHH
Confidence            999999999994 5322001111111122222222   22344543 45666765 789999444444443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.71  E-value=0.33  Score=44.71  Aligned_cols=90  Identities=10%  Similarity=0.020  Sum_probs=58.1

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCcc-chHHHHHHHHHHHhccchHHHHhhhC
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHV-ILSLARMELANFYQNVTPVTDFFDQR  134 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~~~  134 (520)
                      ..++|+|.-.....+. .+.........+|+|+||.+++.+|+. |+.   +. +.+.+...+..+.       .+|.+.
T Consensus       101 g~~viid~~~~~~~~~-~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~---~~~~~~~l~~~~~~~~-------~~~~~~  169 (200)
T 4eun_A          101 GVSTIITCSALKRTYR-DVLREGPPSVDFLHLDGPAEVIKGRMSKREG---HFMPASLLQSQLATLE-------ALEPDE  169 (200)
T ss_dssp             TCCEEEEECCCCHHHH-HHHTTSSSCCEEEEEECCHHHHHHHHTTCSC---CSSCGGGHHHHHHHCC-------CCCTTS
T ss_pred             CCCEEEEchhhhHHHH-HHHHHhCCceEEEEEeCCHHHHHHHHHhccc---CCCCHHHHHHHHHHhC-------CCCCCC
Confidence            3567887644443333 444444456689999999999999994 432   21 2334444443332       234432


Q ss_pred             CcEEEEeCCCChHHHHHHHHHHHH
Q psy11031        135 GMLIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus       135 ~~l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                       ..+.||++.+++++.++|.+.+.
T Consensus       170 -~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          170 -SGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             -CEEEEETTSCHHHHHHHHHHHHC
T ss_pred             -CeEEEECCCCHHHHHHHHHHHHH
Confidence             37889999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.66  E-value=0.13  Score=45.67  Aligned_cols=87  Identities=13%  Similarity=0.202  Sum_probs=54.2

Q ss_pred             CCcEEEe-C--CCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccc----hHHHHHHHHHHHhccchHH
Q psy11031         57 AKAFLIS-G--YPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVI----LSLARMELANFYQNVTPVT  128 (520)
Q Consensus        57 ~~G~ILD-G--FPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d----~e~i~~Rl~~Y~~~t~pvi  128 (520)
                      ..+|||+ |  .+...... .++.   .++.+|+|+||.+++.+|+. |+   .|..    .+.++.++...       .
T Consensus        69 ~~~~Vi~~g~~~~~~~~~~-~~l~---~~~~~i~l~~~~e~~~~R~~~r~---~r~~~~~~~~~i~~~~~~~-------~  134 (168)
T 2pt5_A           69 KENVVISTGGGLGANEEAL-NFMK---SRGTTVFIDIPFEVFLERCKDSK---ERPLLKRPLDEIKNLFEER-------R  134 (168)
T ss_dssp             SSSEEEECCHHHHTCHHHH-HHHH---TTSEEEEEECCHHHHHHHCBCTT---CCBGGGSCGGGTHHHHHHH-------H
T ss_pred             cCCeEEECCCCEeCCHHHH-HHHH---cCCEEEEEECCHHHHHHHHhCCC---CCCCCcchHHHHHHHHHHH-------H
Confidence            4578886 4  33333333 2222   36899999999999999994 32   2321    22333333321       2


Q ss_pred             HHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031        129 DFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus       129 ~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      .+|.+ .-++. |++.+++++.++|.+.+..
T Consensus       135 ~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A          135 KIYSK-ADIKV-KGEKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             HHHTT-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred             HHHHh-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence            34654 33444 8889999999999988863

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.65  E-value=0.019  Score=56.66  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+..++|.|+||+|||++|+.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            35569999999999999999888764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.65  E-value=0.017  Score=51.61  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++|+|++||||||+++.|+..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.63  E-value=0.23  Score=45.24  Aligned_cols=131  Identities=6%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             ccCcccCcHHHHHHHH-HHc--cCCCCC-CC---CHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCE
Q psy11031         12 LDFPSHRNPLKMFNLF-VSE--EVKDFS-FL---SSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTING   84 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~-i~~--G~~~g~-lV---Pdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~   84 (520)
                      ++++ +++++..++.. +..  +...+. .+   +++.+.+.+...+.   ...|+|+|+..+..     |..  ..++.
T Consensus        35 ~g~~-~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~---~~g~~vi~~~~~~~-----~~~--~~~~~  103 (184)
T 1y63_A           35 DGFQ-HLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMV---SRGNHVVDYHSSEL-----FPE--RWFHM  103 (184)
T ss_dssp             TTEE-EEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHT---SSSEEEEECSCCTT-----SCG--GGCSE
T ss_pred             CCCE-EeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHh---ccCCEEEeCchHhh-----hhh--ccCCE
Confidence            5667 88888887762 000  111111 34   45555565555442   24689999875421     111  13689


Q ss_pred             EEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHH-H-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031         85 VILIAWRQSLLERQID-YGAKLGHVILSLARMELA-N-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI  160 (520)
Q Consensus        85 VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~-~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~  160 (520)
                      ||+|+||.+++.+|+. |+..  |   ..+..++. . +..-...-...|.. ..++.+| +.+++++..++.+++..+
T Consensus       104 vi~l~~~~e~~~~Rl~~R~~~--~---~~~~~~~~~q~~~~l~~~~~~~y~~-~~vi~~n-~~~~~~~~~~v~~i~~~l  175 (184)
T 1y63_A          104 VVVLHTSTEVLFERLTKRQYS--E---AKRAENMEAEIQCICEEEARDAYED-DIVLVRE-NDTLEQMAATVEEIRERV  175 (184)
T ss_dssp             EEEEECCHHHHHHHHHHTTCC--H---HHHHHHHHHHHTTHHHHHHHHHSCG-GGEEEEE-CSSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHhCCCC--h---hhhHhhHHHHHHHHHHHHHHHHhcc-CcEEECC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999994 4311  1   22233332 2 22223344566763 3455556 468999977777766544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.63  E-value=0.018  Score=61.59  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      |+-|+|.||||+||||+|+.|+... +.+.  ++..++..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~-~~~f~~is~~~~~~   87 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEA-NVPFFHISGSDFVE   87 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGTTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc-CCCeeeCCHHHHHH
Confidence            4559999999999999999999886 6554  45555554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.60  E-value=0.017  Score=54.14  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++.|+|++||||||+++.|+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.57  E-value=0.025  Score=51.12  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.....+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            3455788999999999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.54  E-value=0.017  Score=53.23  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .++|.|.|++||||||++.+|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.52  E-value=0.019  Score=52.72  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++|.|+||+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999998763

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.51  E-value=0.022  Score=55.12  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKL  260 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdL  260 (520)
                      .-|+|.|+||+|||++|+.|++...    .+..+++..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            3489999999999999999998641    2556666544

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.46  E-value=0.02  Score=60.64  Aligned_cols=37  Identities=16%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCC----CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPN----WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g----~~~is~gdLlr  262 (520)
                      +.-+++.||||+|||++|+.|++.+ +    +..++..++..
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~  103 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYS  103 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHH
Confidence            4569999999999999999999986 6    34455555544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.42  E-value=0.023  Score=52.85  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ...+++|.|+|||||||+|..|+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999985

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.40  E-value=0.023  Score=55.95  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..++|.|+||+||||+|+.|++..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            369999999999999999999864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.37  E-value=0.031  Score=59.04  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr  262 (520)
                      .+.-|+|.||||+|||++|+.|+....+  +..+++.+++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            4567999999999999999999987523  34456656654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.34  E-value=0.079  Score=48.03  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=44.5

Q ss_pred             cCEEEEEEcCHHHHHHHhh-hCc-cC-CccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHHH
Q psy11031         82 INGVILIAWRQSLLERQID-YGA-KL-GHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTAV  157 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-rg~-~~-~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l  157 (520)
                      .+.+|+|+||.+++.+|+. |+. .. ...+   ...++..+.....   .+|.... .+.||++ .+++++.++|.+.+
T Consensus        94 ~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~---~~~~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l  166 (184)
T 2iyv_A           94 GHTVVYLEISAAEGVRRTGGNTVRPLLAGPD---RAEKYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRL  166 (184)
T ss_dssp             TSCEEEEECCHHHHHHHTTCCCCCSSTTSCC---HHHHHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTS
T ss_pred             CCeEEEEeCCHHHHHHHHhCCCCCCCccCCC---HHHHHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHH
Confidence            5689999999999999994 321 10 1111   2234555544333   3554432 3679998 89999999987765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.26  E-value=0.022  Score=53.16  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+++|+|++||||||++..|+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999843

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.25  E-value=0.02  Score=54.62  Aligned_cols=24  Identities=13%  Similarity=0.061  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+++.||||+||||.|..|++.+
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            459999999999999999999875

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=94.22  E-value=0.61  Score=46.45  Aligned_cols=156  Identities=9%  Similarity=0.140  Sum_probs=82.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc---------chHHHHhhhhcCCccchH----
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG---------LNSRIKSSVSAGDFVNRD----  291 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~---------~g~~i~~~l~~G~~vPd~----  291 (520)
                      ..-|+|+||   ||+|++++|.++++.....|+..-.|   . ...+..         .-+.++..+.+|..+--.    
T Consensus       100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR---~-pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~g  172 (292)
T 3tvt_A          100 TRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTR---P-KREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYND  172 (292)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS---C-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCeEEEeCC---CHHHHHHHHHHhChhhccccccCCcc---C-CcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcc
Confidence            344777787   59999999999986655566554444   1 111111         113455555555433210    


Q ss_pred             ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hh---hccCCCCCHHHHHHHH
Q psy11031        292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VL---HKGQIDNSVSAFRRRL  363 (520)
Q Consensus       292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~---~r~R~dD~~e~~~~Rl  363 (520)
                          +-.+-+.+.+.     .++.+|||-=+..   +..+.... ..+.+|||..|.. .+   .++|.+++.+.+..|+
T Consensus       173 n~YGT~~~~V~~~~~-----~gk~viLdid~qg---~~~lk~~~-~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~  243 (292)
T 3tvt_A          173 NLYGTSVASVREVAE-----KGKHCILDVSGNA---IKRLQVAQ-LYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERA  243 (292)
T ss_dssp             EEEEEEHHHHHHHHH-----HTCEEEECCCTHH---HHHHHHTT-CCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHH
T ss_pred             ceeEEehHHHHHHHH-----cCCcEEEeccchh---hhhccccc-ccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHH
Confidence                01222333333     3678999875444   44444332 3456888887643 22   2345555555555555


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ....   .....+|+    .+ |. +.+.++.+++|.++|..
T Consensus       244 ~k~e---~e~~~~fD----~v-Iv-Nddle~a~~~l~~iI~~  276 (292)
T 3tvt_A          244 IKME---QEFGEYFT----GV-VQ-GDTIEEIYSKVKSMIWS  276 (292)
T ss_dssp             HHHH---HHHTTTCS----EE-EC-CSSHHHHHHHHHHHHHH
T ss_pred             HHHH---HhhhhhCC----EE-EE-CcCHHHHHHHHHHHHHH
Confidence            4322   12222332    23 32 45778888887777655

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.19  E-value=0.022  Score=57.29  Aligned_cols=27  Identities=33%  Similarity=0.678  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|+|+|++||||||.+.+|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            346789999999999999999998754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.14  E-value=0.019  Score=53.31  Aligned_cols=94  Identities=10%  Similarity=0.071  Sum_probs=57.6

Q ss_pred             CCcEEEeCCCCCH--HhH-----------HHHHHh------c-CCcCEEEEEEcCHHHHHHHhh-hCcc-CCcc-c----
Q psy11031         57 AKAFLISGYPRNM--RDV-----------VEYSDK------I-KTINGVILIAWRQSLLERQID-YGAK-LGHV-I----  109 (520)
Q Consensus        57 ~~G~ILDGFPRt~--~QA-----------~~~~~~------~-~~pd~VI~L~~pd~~l~~Rl~-rg~~-~~r~-d----  109 (520)
                      ...+|+|||+.+.  .|+           ..+...      . ..||.+|+|++|.+++.+|+. |+.. .+|. +    
T Consensus        88 g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~  167 (214)
T 1gtv_A           88 YDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYER  167 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEE
T ss_pred             CCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccccccccccc
Confidence            3568999999763  232           122222      1 269999999999999999984 4321 1111 1    


Q ss_pred             hHHHHHHHHH-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHH
Q psy11031        110 LSLARMELAN-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT  155 (520)
Q Consensus       110 ~e~i~~Rl~~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~  155 (520)
                      .+.+.+|+.. |.+.    .+.|. ...++.||+++++++|+++|.+
T Consensus       168 ~~~~~~~~~~~~~~~----~~~~~-~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          168 DAELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             EHHHHHHHHHHHHHH----HHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHHH----HHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence            1345555543 4331    23332 1347889999999999998854

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.11  E-value=0.066  Score=49.99  Aligned_cols=94  Identities=10%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCc-cchHHHHHHHHH--HHhccchHHHHhh
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGH-VILSLARMELAN--FYQNVTPVTDFFD  132 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r-~d~e~i~~Rl~~--Y~~~t~pvi~~Y~  132 (520)
                      ..|+|+||  |+....     .....+.+|+|+||.+++.+|+ .+...-++ .+.+.+.+++..  |......+..+|.
T Consensus       118 ~~~~vi~g--~~~~~~-----~~~~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~  190 (219)
T 2h92_A          118 EKGIVMDG--RDIGTV-----VLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRK  190 (219)
T ss_dssp             TCCEEEEE--SSCCCC-----CCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCC
T ss_pred             CCcEEEEc--CCccce-----ecCCCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhcccccc
Confidence            46899999  333211     1234689999999999999886 21100022 145556666642  3333333444554


Q ss_pred             hCCcEEEEeCC-CChHHHHHHHHHHHH
Q psy11031        133 QRGMLIAVNGE-RNPVEVYADFRTAVL  158 (520)
Q Consensus       133 ~~~~l~~Ida~-~~~eeV~~~i~~~l~  158 (520)
                      ... .+.||.+ .+++++.++|.+.+.
T Consensus       191 ~~d-~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          191 ADD-AVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             CTT-CEEEECTTCCHHHHHHHHHHHHH
T ss_pred             CCC-eEEEECCCCCHHHHHHHHHHHHh
Confidence            422 4678887 599999999998875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.10  E-value=0.026  Score=57.33  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|+|+.||||||++++|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999998643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.09  E-value=0.029  Score=48.89  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++|+|+|.+|+||||++.++....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.05  E-value=0.037  Score=58.57  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      .+.++|.||||+||||+|+.|++.. +...+.+
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~-~~~f~~l   81 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYA-NADVERI   81 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHT-TCEEEEE
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh-CCCeEEE
Confidence            3679999999999999999999986 7665543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.04  E-value=0.19  Score=46.23  Aligned_cols=87  Identities=8%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      ..+|+||- -..+ . .+.   ..++.+|+|+||.+++.+|+. |+    . +.+.+.+|+...    .+...++.... 
T Consensus       106 ~~vive~~-~l~~-~-~~~---~~~~~~i~l~~~~e~~~~Rl~~R~----~-~~~~~~~~~~~~----~~~~~~~~~ad-  169 (204)
T 2if2_A          106 TLFILEAS-LLVE-K-GTY---KNYDKLIVVYAPYEVCKERAIKRG----M-SEEDFERRWKKQ----MPIEEKVKYAD-  169 (204)
T ss_dssp             CCEEEECS-CSTT-T-TCG---GGSSEEEEECCCHHHHHHHHHHTC----C-CHHHHHHHHTTS----CCHHHHGGGCS-
T ss_pred             CEEEEEcc-cccc-C-Cch---hhCCEEEEEECCHHHHHHHHHHcC----C-CHHHHHHHHHhC----CChhHHHhcCC-
Confidence            67899984 2111 1 111   137899999999999999994 42    1 334555666543    34455555443 


Q ss_pred             EEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        137 LIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       137 l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                       +.||++.++++++++|.+.+....
T Consensus       170 -~vId~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          170 -YVIDNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             -EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred             -EEEECCCCHHHHHHHHHHHHHHHh
Confidence             468999999999999999887544

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.95  E-value=0.037  Score=59.48  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLL  261 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLl  261 (520)
                      |+-++|+||||+||||+|+.|+... +.  ..++..++.
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~~~~  101 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFV  101 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGGGGT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEehhHHH
Confidence            4449999999999999999999875 54  444554443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.95  E-value=0.029  Score=56.34  Aligned_cols=26  Identities=35%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|.|+|+.||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56799999999999999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.92  E-value=0.022  Score=53.22  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++.|+|++||||||+++.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999998754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=93.92  E-value=0.041  Score=58.97  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      ..+.-|+|.|+||+|||++|+.|+... +...  +++.++..
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~  276 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS  276 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHT
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh-CCCEEEEEchHhhh
Confidence            446679999999999999999999986 7554  46666654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.90  E-value=0.031  Score=60.61  Aligned_cols=35  Identities=23%  Similarity=0.481  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGK  259 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gd  259 (520)
                      .+..++|+||||+||||+|+.|+... +..  .++++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~  143 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG  143 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence            46789999999999999999999875 544  344433

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.87  E-value=0.031  Score=63.47  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh--hhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL--GKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~--gdLlr  262 (520)
                      ..|+-|++.||||+|||.+|+.||... ++..+++  .+|+.
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~~l~s  549 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLT  549 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHHHHHT
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccchhhc
Confidence            446679999999999999999999997 8877654  47766

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.84  E-value=0.042  Score=55.69  Aligned_cols=26  Identities=12%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..++|.|+||+||||+++.+++.
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            34668999999999999999999874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=93.82  E-value=0.025  Score=56.70  Aligned_cols=27  Identities=15%  Similarity=0.235  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      -++|.|+||+|||++|+.|++.+ +...
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~-~~~~   74 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTM-DLDF   74 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHT-TCCE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh-CCCe
Confidence            39999999999999999999986 6543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.81  E-value=0.041  Score=49.78  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            346789999999999999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.81  E-value=0.038  Score=49.35  Aligned_cols=28  Identities=11%  Similarity=0.057  Sum_probs=22.6

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ......+|+|+|.+|+||||+..++...
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3455678999999999999999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.80  E-value=0.034  Score=55.99  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -+...++.|+||+||||||+++.|+.-+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3456789999999999999999999765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.78  E-value=0.03  Score=49.95  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .....+|+|+|.+|+||||+..++...
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999999875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.78  E-value=0.035  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+||||||++.+|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            4568999999999999999999865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.77  E-value=0.03  Score=52.84  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++.|+|+|||||||+|..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999999874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.75  E-value=0.036  Score=55.80  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..++|.|++|+||||+++.+++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            44668999999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.74  E-value=0.035  Score=49.33  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+||||||++.++...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.73  E-value=0.031  Score=56.10  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.++.|+|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999998753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=93.72  E-value=0.041  Score=54.78  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ..|..+++.|+||+|||++++.+++.+ +...+.+
T Consensus        46 ~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i   79 (324)
T 3u61_B           46 KIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFV   79 (324)
T ss_dssp             CCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEE
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEE
Confidence            344566777779999999999999987 7665544

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.64  E-value=0.052  Score=48.21  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .++.+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45788999999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.61  E-value=0.035  Score=56.13  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +..++|.||||+|||++|+.+++..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.60  E-value=0.11  Score=47.28  Aligned_cols=93  Identities=12%  Similarity=0.013  Sum_probs=54.6

Q ss_pred             cEEEeCCCCCHHh---HHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHH-HHHhccchHHHHhhh-
Q psy11031         59 AFLISGYPRNMRD---VVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELA-NFYQNVTPVTDFFDQ-  133 (520)
Q Consensus        59 G~ILDGFPRt~~Q---A~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~-~Y~~~t~pvi~~Y~~-  133 (520)
                      -+|+||+......   ...+......++.+|+|+||.+++.+|+.++..          .|.. ...+....+.+.|.. 
T Consensus        87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~----------~~~~~~~~~~~~~~~~~y~~~  156 (186)
T 2yvu_A           87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLY----------KKALKGELENFTGITDPYEPP  156 (186)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHH----------HHHHTTCCSSCHHHHSCCCCC
T ss_pred             EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhh----------hHHhhcchhhhhhhhhcccCC
Confidence            3466886644322   222333334689999999999999999843210          0100 000111112233432 


Q ss_pred             CCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031        134 RGMLIAVNGE-RNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       134 ~~~l~~Ida~-~~~eeV~~~i~~~l~~~~  161 (520)
                      ..-.+.||++ ++++++.+.|.+.+...+
T Consensus       157 ~~~~~~Id~~~~~~~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          157 ENPQLVLDTESNTIEHNVSYLYSLVKAVI  185 (186)
T ss_dssp             SSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            1224789998 899999999999987654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.60  E-value=0.042  Score=50.63  Aligned_cols=24  Identities=13%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+++.|.|++||||||+++.|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            468999999999999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.60  E-value=0.044  Score=48.65  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999999865

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=93.58  E-value=0.045  Score=57.71  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC------CCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY------PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~------~g~~~is~gdLlr  262 (520)
                      +.-++|.|+||+||||+++.|+...      ..+.++++.++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~  173 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            5679999999999999999998742      1345667666544

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=93.56  E-value=0.028  Score=55.68  Aligned_cols=29  Identities=14%  Similarity=0.269  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      +..++|.|+||+|||++|+.+++.. +...
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~-~~~~   66 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHEL-GVNL   66 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHH-TCCE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHh-CCCE
Confidence            4568999999999999999999876 6544

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.52  E-value=0.038  Score=54.20  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+||.||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            346789999999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.52  E-value=0.031  Score=50.06  Aligned_cols=25  Identities=12%  Similarity=0.185  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|.+|+||||++.++...
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            4678999999999999999999853

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.50  E-value=0.34  Score=44.38  Aligned_cols=83  Identities=7%  Similarity=-0.066  Sum_probs=53.6

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHH----HHHhccchHHHHhh
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELA----NFYQNVTPVTDFFD  132 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~----~Y~~~t~pvi~~Y~  132 (520)
                      .++|+||.-..  .     .....++.+|+|+||.+++.+|+ .+..    .+.+.+.+++.    .|....       .
T Consensus       119 ~~~vi~g~~~~--~-----~~~~~~d~~i~l~a~~e~~~~R~~~r~~----~~~~~~~~~~~~R~~~~~~~~-------~  180 (208)
T 3ake_A          119 PPFVAEGRDMG--T-----AVFPEAAHKFYLTASPEVRAWRRARERP----QAYEEVLRDLLRRDERDKAQS-------A  180 (208)
T ss_dssp             SCEEEEESSCC--C-----CCCTTCSEEEEEECCHHHHHHHHHHTSS----SCHHHHHHHHHHHHHTC--CC-------C
T ss_pred             CCEEEEcccee--E-----EEecCCcEEEEEECCHHHHHHHHHhhcc----cCHHHHHHHHHHHHHHHhhcc-------c
Confidence            79999998543  1     01124789999999999999998 3422    23334444444    332221       2


Q ss_pred             hCCcEEEEeCCC-ChHHHHHHHHHHHH
Q psy11031        133 QRGMLIAVNGER-NPVEVYADFRTAVL  158 (520)
Q Consensus       133 ~~~~l~~Ida~~-~~eeV~~~i~~~l~  158 (520)
                      ...-.+.||.+. +++++.++|.+.+.
T Consensus       181 ~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          181 PAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             CCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            222247899995 99999999988764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.49  E-value=0.048  Score=49.43  Aligned_cols=27  Identities=11%  Similarity=0.154  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .....+|+|+|.+|+||||+..+|...
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345788999999999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.47  E-value=0.052  Score=50.37  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      ..-|+|.|++|+||||+|..|.++  |+..++-+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r--G~~lvaDD~   48 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR--GHQLVCDDV   48 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT--TCEEEESSE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc--CCeEecCCE
Confidence            456999999999999999999974  888777653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.45  E-value=0.037  Score=51.24  Aligned_cols=24  Identities=13%  Similarity=-0.009  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..++++.|+|||||||.+.+++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999766654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.40  E-value=0.03  Score=56.70  Aligned_cols=28  Identities=11%  Similarity=0.319  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...|+.++|.||||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.39  E-value=0.044  Score=47.59  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+||||||++..+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.37  E-value=0.042  Score=52.93  Aligned_cols=27  Identities=26%  Similarity=0.155  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+.-
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            345678999999999999999998743

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.37  E-value=0.044  Score=54.03  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+++|+|+|||||||++..|+..
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            34678999999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.35  E-value=0.046  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..++...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.33  E-value=0.047  Score=47.63  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+||||||++.+|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999999865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.33  E-value=0.052  Score=49.19  Aligned_cols=27  Identities=15%  Similarity=0.190  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|++||||||+...|....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            346789999999999999999998753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.33  E-value=0.043  Score=50.28  Aligned_cols=26  Identities=19%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+|+|+|++||||||+.++|+...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.30  E-value=0.047  Score=50.12  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|++||||||+.++|+..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.29  E-value=0.052  Score=50.37  Aligned_cols=27  Identities=15%  Similarity=0.190  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++|+|+|++||||||++.+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.29  E-value=0.057  Score=47.96  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|.+|+||||++.+|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.28  E-value=0.04  Score=52.02  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ....++|.|+|||||||+|..++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.28  E-value=0.041  Score=55.49  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..++|.|+||+||||+++.+++.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            44667999999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.28  E-value=0.04  Score=55.09  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|.|+|++||||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.25  E-value=0.053  Score=48.80  Aligned_cols=25  Identities=16%  Similarity=0.360  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|++|+||||+..+|+..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.21  E-value=0.27  Score=48.38  Aligned_cols=89  Identities=10%  Similarity=0.070  Sum_probs=61.3

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG  135 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~  135 (520)
                      ...+|+||.--.  +. .|.   ..+|.+|+|+||.+++.+|+ .|.   ++ +.+.+.+|+...    .+..+++....
T Consensus       181 ~~~vIveg~~l~--~~-~~~---~~~d~vI~l~a~~ev~~~Rl~~R~---g~-s~e~~~~ri~~q----~~~~~~~~~AD  246 (281)
T 2f6r_A          181 KTLCVIDAAMLL--EA-GWQ---SMVHEVWTVVIPETEAVRRIVERD---GL-SEAAAQSRLQSQ----MSGQQLVEQSN  246 (281)
T ss_dssp             CCEEEEECTTTT--TT-TGG---GGCSEEEEEECCHHHHHHHHHHHH---CC-CHHHHHHHHHTS----CCHHHHHHTCS
T ss_pred             CCEEEEEechhh--cc-chH---HhCCEEEEEcCCHHHHHHHHHHcC---CC-CHHHHHHHHHHc----CChHhhHhhCC
Confidence            457999996321  11 111   24789999999999999998 442   22 345566666554    34455554433


Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031        136 MLIAVNGERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       136 ~l~~Ida~~~~eeV~~~i~~~l~~~~  161 (520)
                        +.||.+.++++++++|.+++..++
T Consensus       247 --~vIdn~~s~eel~~~I~~~l~~l~  270 (281)
T 2f6r_A          247 --VVLSTLWESHVTQSQVEKAWNLLQ  270 (281)
T ss_dssp             --EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             --EEEECCCCHHHHHHHHHHHHHHHH
Confidence              568999999999999999998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.20  E-value=0.06  Score=47.34  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|.+|+||||+..++...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4678999999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.19  E-value=0.056  Score=48.39  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44578999999999999999999865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.15  E-value=0.05  Score=48.38  Aligned_cols=24  Identities=17%  Similarity=0.374  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|++|+||||+..+|+..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.14  E-value=0.021  Score=52.51  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +++.|+|+.||||||+++.|+..|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.14  E-value=0.056  Score=49.31  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             cCCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        220 VERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |......+|+|+|.+|+||||+..+|...
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            33456788999999999999999999865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.13  E-value=0.044  Score=51.88  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ..++.|+|+.||||||+.+.|+.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46799999999999999999874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.11  E-value=0.049  Score=52.54  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999998743

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.10  E-value=0.054  Score=50.45  Aligned_cols=25  Identities=20%  Similarity=0.419  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..++|+|+|.+||||||++.+|+..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.09  E-value=0.044  Score=56.40  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|+|+.||||||++++|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            357899999999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.07  E-value=0.055  Score=49.57  Aligned_cols=28  Identities=11%  Similarity=0.241  Sum_probs=22.3

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ......+|+|+|.+|+||||++.+|...
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3456789999999999999999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.06  E-value=0.055  Score=47.83  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+|+|+|.+|+||||+..+|....
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC
Confidence            5689999999999999999998653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.06  E-value=0.046  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+.-
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44678999999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.05  E-value=0.049  Score=55.07  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.++|.|+||+||||+++.+++.+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.04  E-value=0.051  Score=48.13  Aligned_cols=27  Identities=15%  Similarity=0.194  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|.+|+||||++.+|....
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence            345789999999999999999998653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.04  E-value=0.063  Score=48.34  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++|+|+|.+||||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            34578999999999999999999865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.01  E-value=0.054  Score=47.54  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||++.++...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            467999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.00  E-value=0.053  Score=48.62  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.+|...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.98  E-value=0.046  Score=48.51  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..++...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3568999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.98  E-value=0.058  Score=48.85  Aligned_cols=26  Identities=12%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            34578999999999999999999865

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.95  E-value=0.048  Score=54.51  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.++|.|+||+||||+++.+++.+
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            339999999999999999999874

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.92  E-value=0.056  Score=52.33  Aligned_cols=26  Identities=15%  Similarity=0.104  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -.. .++.|+|+.||||||+.+.|+.-
T Consensus        22 i~~-e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           22 MGR-DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             ECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence            345 78999999999999999999854

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.89  E-value=0.064  Score=50.13  Aligned_cols=25  Identities=20%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..++|+|+|.+||||||++.+++..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999876

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=92.89  E-value=0.037  Score=55.42  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++|.|+||+|||++|+.|++..
T Consensus        48 vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            9999999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.88  E-value=0.045  Score=56.02  Aligned_cols=28  Identities=32%  Similarity=0.408  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      ..++.|+|++||||||+++.|+..+ ...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~-~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF-NTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT-TCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence            5789999999999999999999886 443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=92.87  E-value=0.048  Score=57.72  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|.+|++.|++||||||.|.+|+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~  123 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARY  123 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHH
Confidence            5789999999999999999999863

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.86  E-value=0.057  Score=52.19  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+.+.|+.-+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3457789999999999999999997643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.83  E-value=0.057  Score=49.56  Aligned_cols=28  Identities=11%  Similarity=0.063  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .....+|+|+|.+|+||||++.+|....
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4557889999999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.82  E-value=0.19  Score=44.84  Aligned_cols=122  Identities=8%  Similarity=0.034  Sum_probs=64.3

Q ss_pred             ccCcccCcHHHHHHHHHHccC-------CCCCCCCHHHHHHHHHHHHhcCCCCCcE-EEe---CCCCCHHhHHHHHHhcC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEEV-------KDFSFLSSKTVTEVLMLEMKMSPAAKAF-LIS---GYPRNMRDVVEYSDKIK   80 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G~-------~~g~lVPdelv~~ll~~~l~~~~~~~G~-ILD---GFPRt~~QA~~~~~~~~   80 (520)
                      |+++ +++.+..++..+  |.       ..|..+..++..+++...+.    ...+ |++   |+|.. +.       ..
T Consensus        31 lg~~-~id~D~~~~~~~--g~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~~~~~Vi~~g~g~~~~-~~-------l~   95 (168)
T 1zuh_A           31 LKLE-VLDTDMIISERV--GLSVREIFEELGEDNFRMFEKNLIDELKT----LKTPHVISTGGGIVMH-EN-------LK   95 (168)
T ss_dssp             HTCC-EEEHHHHHHHHH--TSCHHHHHHHTCHHHHHHHHHHHHHHHHT----CSSCCEEECCGGGGGC-GG-------GT
T ss_pred             hCCC-EEEChHHHHHHh--CCCHHHHHHHhCHHHHHHHHHHHHHHHHh----cCCCEEEECCCCEech-hH-------Hh
Confidence            4566 777777666543  22       01223333444444444332    2344 664   46655 22       23


Q ss_pred             CcCEEEEEEcCHHHHHHHhh-hCccCCccc---hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQID-YGAKLGHVI---LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d---~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                      .++.+|+|+||.+++.+|+. |+. ..|..   .+.+.+++.    ...   .+|.+.. -+.||.+.+++++.++|.+.
T Consensus        96 ~~~~vi~l~~~~e~~~~Rl~~r~~-~~r~~~~~~~~~~~~~~----~r~---~~~~~~a-~~~Id~~~~~e~~~~~I~~~  166 (168)
T 1zuh_A           96 GLGTTFYLKMDFETLIKRLNQKER-EKRPLLNNLTQAKELFE----KRQ---ALYEKNA-SFIIDARGGLNNSLKQVLQF  166 (168)
T ss_dssp             TSEEEEEEECCHHHHHHHHCC---------CCTTHHHHHHHH----HHH---HHHHHTC-SEEEEGGGCHHHHHHHHHHC
T ss_pred             cCCEEEEEECCHHHHHHHHhccCC-CCCCCccCHHHHHHHHH----HHH---HHHHHHC-CEEEECCCCHHHHHHHHHHH
Confidence            47899999999999999994 410 12221   222332222    222   3454421 35678888999999998765


Q ss_pred             H
Q psy11031        157 V  157 (520)
Q Consensus       157 l  157 (520)
                      +
T Consensus       167 l  167 (168)
T 1zuh_A          167 I  167 (168)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.82  E-value=0.044  Score=57.83  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .|.+|++.|++||||||.+.+|+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~  120 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYF  120 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999853

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.77  E-value=0.063  Score=46.90  Aligned_cols=24  Identities=25%  Similarity=0.363  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..++...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=92.74  E-value=0.072  Score=52.82  Aligned_cols=33  Identities=15%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      ..++|.|++|+||||+++.+++.. ++.++++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~-~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER-PGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS-SEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc-CcEEEEeec
Confidence            689999999999999999999986 777777654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.73  E-value=0.058  Score=52.84  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999998754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.72  E-value=0.061  Score=57.68  Aligned_cols=27  Identities=26%  Similarity=0.462  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+.+|.|+|+.||||||++++|+..
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHH
Confidence            345789999999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.72  E-value=0.054  Score=47.40  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+||||||+..++...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.71  E-value=0.063  Score=47.07  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.71  E-value=0.058  Score=48.55  Aligned_cols=28  Identities=14%  Similarity=0.148  Sum_probs=22.3

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+..+|+|+|.+|+||||+..+|...
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3455688999999999999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.68  E-value=0.063  Score=47.73  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|.+|+||||+..+|....
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence            346789999999999999999998653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.66  E-value=0.055  Score=48.00  Aligned_cols=26  Identities=15%  Similarity=0.390  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.66  E-value=0.057  Score=54.24  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +. ++|.||+|+||||+++.|+..
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHH
Confidence            44 999999999999999999985

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.65  E-value=0.059  Score=48.57  Aligned_cols=27  Identities=11%  Similarity=0.017  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|.+|+||||+++.|...+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence            345789999999999999999888765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.64  E-value=0.061  Score=53.00  Aligned_cols=28  Identities=29%  Similarity=0.251  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+.+.|+.-+
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4456789999999999999999997643

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=92.64  E-value=0.07  Score=50.20  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.++++.|+||||||+.|..+...
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            458999999999999999876443

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.63  E-value=0.064  Score=48.42  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.++...
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.61  E-value=0.068  Score=48.02  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..+|+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.60  E-value=0.059  Score=47.36  Aligned_cols=25  Identities=12%  Similarity=0.201  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..++...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3568999999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.60  E-value=0.068  Score=47.67  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||++.+|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4578999999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=92.59  E-value=0.058  Score=53.38  Aligned_cols=26  Identities=27%  Similarity=0.288  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+||.||||||+++.|+.-
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999999754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=92.56  E-value=0.063  Score=52.73  Aligned_cols=27  Identities=30%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            345678999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.56  E-value=0.067  Score=47.95  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+||||||++.+|...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=92.56  E-value=0.062  Score=48.75  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .....++|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999999764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.54  E-value=0.05  Score=47.65  Aligned_cols=25  Identities=12%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..+|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3568999999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.53  E-value=0.062  Score=52.17  Aligned_cols=27  Identities=26%  Similarity=0.294  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999998754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.52  E-value=0.065  Score=52.43  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+.+.|+.-+
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3456789999999999999999997643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.51  E-value=0.062  Score=48.54  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||++..|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3578999999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.50  E-value=0.059  Score=52.76  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ...++.|.|++||||||++..|+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999998875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.49  E-value=0.07  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||++.++...
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999743

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.48  E-value=0.059  Score=54.29  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +++.||||+||||+++.+++..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999874

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=92.48  E-value=0.087  Score=51.99  Aligned_cols=25  Identities=12%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...|++.||||+|||++|..|+..+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3469999999999999999999865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.48  E-value=0.071  Score=46.71  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+|+|+|.+|+||||+..+|....
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4689999999999999999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.48  E-value=0.069  Score=48.43  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            44578999999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.47  E-value=0.063  Score=48.08  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.46  E-value=0.064  Score=51.74  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+.-
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.45  E-value=0.073  Score=52.25  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      -....++.|+|+.||||||+.+.|+.
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34567899999999999999999985

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.45  E-value=0.071  Score=51.75  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ....++.|+|+.||||||+.+.|+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999985

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.43  E-value=0.065  Score=52.27  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+.-
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999998753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.42  E-value=0.073  Score=46.62  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||++.++...
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            57999999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.41  E-value=0.068  Score=52.26  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=92.40  E-value=0.22  Score=44.73  Aligned_cols=90  Identities=12%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             CCcEEEe-CCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhC
Q psy11031         57 AKAFLIS-GYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQR  134 (520)
Q Consensus        57 ~~G~ILD-GFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~  134 (520)
                      ..++||+ |++.-.. . .+    ...+.+|+|++|.+++.+|+. +... .|...+. ..++....+   ....+|.+.
T Consensus        73 ~~~~vi~~g~~~~~~-~-~l----~~~~~~i~l~~~~e~~~~R~~~r~~~-~r~~~~~-~~~i~~~~~---~r~~~y~~~  141 (175)
T 1via_A           73 CEKACIATGGGFVNV-S-NL----EKAGFCIYLKADFEYLKKRLDKDEIS-KRPLFYD-EIKAKKLYN---ERLSKYEQK  141 (175)
T ss_dssp             CCSEEEECCTTGGGS-T-TG----GGGCEEEEEECCHHHHTTCCCGGGTT-TSCTTCC-HHHHHHHHH---HHHHHHHHH
T ss_pred             cCCEEEECCCCEehh-h-HH----hcCCEEEEEeCCHHHHHHHHhcccCC-CCCCccc-HHHHHHHHH---HHHHHHHhc
Confidence            3567777 7665443 2 12    234789999999999999983 4211 3432110 122222222   223556542


Q ss_pred             CcEEEEeCC-CChHHHHHHHHHHHH
Q psy11031        135 GMLIAVNGE-RNPVEVYADFRTAVL  158 (520)
Q Consensus       135 ~~l~~Ida~-~~~eeV~~~i~~~l~  158 (520)
                      . .+.||++ .+++++.+.|.+.+.
T Consensus       142 ~-~~~Idt~~~~~eev~~~I~~~l~  165 (175)
T 1via_A          142 A-NFILNIENKNIDELLSEIKKVIK  165 (175)
T ss_dssp             C-SEEEECTTCCHHHHHHHHHHHHC
T ss_pred             C-CEEEECCCCCHHHHHHHHHHHHH
Confidence            2 5789999 899999999988875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.39  E-value=0.061  Score=48.72  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      .+|+|+|++|+||||+..+++.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999986

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=92.38  E-value=0.074  Score=52.34  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++|.|+||+||||+|+.+++.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.38  E-value=0.088  Score=47.68  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence            44678999999999999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.37  E-value=0.076  Score=53.96  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ....++.|+|+|||||||+.+.|+.
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999985

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.36  E-value=0.066  Score=52.64  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            345678999999999999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.35  E-value=0.059  Score=48.14  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ....+|+|+|.+|+||||+..++..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999999998874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.33  E-value=0.064  Score=54.79  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +...++.|+|+|||||||+|..|+..+
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.30  E-value=0.067  Score=47.34  Aligned_cols=24  Identities=13%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||++.+|...
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999999854

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.30  E-value=0.061  Score=51.19  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+.-
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34568999999999999999998754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.27  E-value=0.077  Score=53.16  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC---C--CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP---N--WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~---g--~~~is~gdLlr  262 (520)
                      ...++|.|+||+|||++|..|+....   |  +..+++.+++.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~  194 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI  194 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence            46799999999999999999886431   2  23456666555

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=92.24  E-value=0.071  Score=51.05  Aligned_cols=27  Identities=15%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++.|+|+.||||||+.+.|+..+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999997543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.24  E-value=0.085  Score=48.06  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+||||||+..+|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.23  E-value=0.077  Score=47.97  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|.+|+||||++.+|....
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence            345789999999999999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.20  E-value=0.08  Score=47.58  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..++...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45688999999999999999999754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.20  E-value=0.044  Score=50.50  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|.|+|++||||||+.+.|+..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            44678999999999999999987643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.19  E-value=0.086  Score=47.61  Aligned_cols=26  Identities=8%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..++...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45688999999999999999999865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.19  E-value=0.07  Score=47.46  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..++...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            34578999999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.16  E-value=0.091  Score=47.74  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..++...
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            44578999999999999999887764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.16  E-value=0.076  Score=52.07  Aligned_cols=27  Identities=33%  Similarity=0.276  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            345678999999999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.10  E-value=0.094  Score=47.31  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34678999999999999999999854

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.10  E-value=0.087  Score=53.77  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|.|+|+|||||||+...|...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=92.06  E-value=0.083  Score=54.35  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVL  246 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La  246 (520)
                      ..+..+|+|+|.+||||||+++.+.
T Consensus        30 ~~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           30 SARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             hcCccEEEEECCCCCcHHHHHHHHH
Confidence            3567899999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.05  E-value=0.073  Score=54.90  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .....|+|+|++||||||+.+.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345689999999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=92.04  E-value=0.066  Score=49.25  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ....+|+|+|.+|+||||+..++..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999999863

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.03  E-value=0.083  Score=48.27  Aligned_cols=25  Identities=12%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.01  E-value=0.078  Score=51.63  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+.-
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34678999999999999999998754

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=91.98  E-value=0.091  Score=52.43  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKL  260 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdL  260 (520)
                      +.-|+|.|+||+|||++|+.|++...    .+..++++.+
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            34589999999999999999988421    3566665543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=91.94  E-value=0.081  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++|.|+||+|||++|+.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            39999999999999999999874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.93  E-value=0.089  Score=47.80  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .....+|+|+|.+|+||||+..++...
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence            345678999999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.91  E-value=0.089  Score=48.07  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            34678999999999999999999865

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.91  E-value=0.089  Score=48.10  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .....+|+|+|.+|+||||+.+.+..++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence            4456789999999999999999887764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.88  E-value=0.081  Score=47.46  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||+..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            46999999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=91.82  E-value=0.097  Score=45.72  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+||||++.++...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999999764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.81  E-value=0.083  Score=52.30  Aligned_cols=27  Identities=11%  Similarity=-0.045  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            345678999999999999999998754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.80  E-value=0.083  Score=51.48  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+|+.||||||+.+.|+.-
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=91.80  E-value=0.085  Score=53.84  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++|.|+|.||+||||++..|+..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45788999999999999999999754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.80  E-value=0.092  Score=47.90  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|.+|+||||+..++...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.79  E-value=0.095  Score=47.38  Aligned_cols=26  Identities=12%  Similarity=0.215  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            34678999999999999999999754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=91.78  E-value=0.084  Score=53.34  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|+|++||||||.+..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            347889999999999999999998653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=91.78  E-value=0.11  Score=47.75  Aligned_cols=28  Identities=14%  Similarity=0.027  Sum_probs=23.7

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ......+|+|+|.+|+||||+..++...
T Consensus         5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            5 SVSKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             SCCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3345678999999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.77  E-value=0.088  Score=47.71  Aligned_cols=26  Identities=15%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcC
Confidence            44578999999999999999999864

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.75  E-value=0.09  Score=51.64  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++|.|+||+||||+|+.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            39999999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.69  E-value=0.12  Score=48.57  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45689999999999999999999764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.68  E-value=0.087  Score=55.99  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .....++.|+|+.||||||+++.|+..+
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            3457889999999999999999998743

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.67  E-value=0.084  Score=48.03  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            44678999999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.65  E-value=0.11  Score=47.24  Aligned_cols=26  Identities=15%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            44578999999999999999999865

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.61  E-value=0.087  Score=54.14  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++.|.|+|||||||+|..++..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.61  E-value=0.099  Score=46.60  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..++...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999999854

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=91.58  E-value=0.1  Score=52.95  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC-CCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY-PNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~-~g~~~is~  257 (520)
                      ...++|.|+|||||||+|..++... ....++++
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            4568999999999999999998641 02345555

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.57  E-value=0.072  Score=56.19  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .|.+|+|+|++||||||+|..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=91.54  E-value=0.087  Score=54.00  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+.|+|+.||||||+++.|+..+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            45689999999999999999999865

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=91.53  E-value=0.11  Score=52.24  Aligned_cols=26  Identities=12%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        37 ~~~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           37 IHHAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             CCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999999875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.50  E-value=0.11  Score=48.09  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.49  E-value=0.11  Score=47.45  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .....+|+|+|.+|+||||+..++...
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            455788999999999999999998754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.49  E-value=0.1  Score=55.42  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++|+|+||+|||++|+.|++..
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999999873

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.44  E-value=0.11  Score=53.57  Aligned_cols=27  Identities=11%  Similarity=0.306  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -...-++.|+||.||||||+.+.|+--
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence            345678999999999999999999853

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.39  E-value=0.1  Score=49.55  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|.+|+||||+...|....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence            456789999999999999999998753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=91.37  E-value=0.091  Score=51.58  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      .-. ..++.|+|+.||||||+.+.|+.
T Consensus        27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           27 EVN-GEKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence            345 67899999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.36  E-value=0.11  Score=53.38  Aligned_cols=27  Identities=15%  Similarity=0.073  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+.-
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence            345678999999999999999999853

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.36  E-value=0.099  Score=47.46  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .....+|+|+|.+|+||||+..++...
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            345678999999999999999999875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=91.33  E-value=0.098  Score=47.65  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34568999999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=91.30  E-value=0.1  Score=53.56  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .-.|+|+||.||||||+.+.|+..+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4489999999999999999887643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.29  E-value=0.083  Score=47.81  Aligned_cols=27  Identities=19%  Similarity=0.227  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999998754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.25  E-value=0.11  Score=49.95  Aligned_cols=26  Identities=12%  Similarity=0.115  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++++.|+|||||||.+-.++.++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            35789999999999999998877654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=91.21  E-value=0.1  Score=51.33  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.16  E-value=0.12  Score=53.23  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+.-
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence            345678999999999999999999854

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=91.15  E-value=0.12  Score=50.29  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+|.|+|.|||||||+...|....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4679999999999999999998653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=91.15  E-value=0.13  Score=57.73  Aligned_cols=36  Identities=14%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      .++|.||||+|||++|+.|++.+    ..+..++++++..
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME  562 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence            69999999999999999999863    2477788877765

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.13  E-value=0.12  Score=53.58  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -...-++.|+||.||||||+.+.|+--
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence            345678999999999999999999853

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.09  E-value=0.1  Score=47.94  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.+|...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=91.08  E-value=0.14  Score=48.96  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..++++.|.+|+||||++..|+..
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~   37 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRY   37 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence            345788999999999999999999843

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.07  E-value=0.13  Score=47.10  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999854

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.07  E-value=0.11  Score=53.37  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+||.||||||+.+.|+--
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34678999999999999999999854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.06  E-value=0.12  Score=46.81  Aligned_cols=27  Identities=11%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+|+|+|.+|+||||++.+|....
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            446789999999999999999998753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.04  E-value=0.12  Score=48.04  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+|+|+|.+|+||||++.+|...
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcC
Confidence            34678999999999999999999853

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.03  E-value=0.14  Score=46.82  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+|+|+|.+|+||||++.++...
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhC
Confidence            45688999999999999999999754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.03  E-value=0.11  Score=51.64  Aligned_cols=27  Identities=15%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            345678999999999999999998754

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.00  E-value=0.09  Score=56.50  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -|+|.|+||+|||++|+.|+...
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGB
T ss_pred             eeEeecCchHHHHHHHHHHHHHH
Confidence            59999999999999999999865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.99  E-value=0.13  Score=53.24  Aligned_cols=27  Identities=11%  Similarity=0.112  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+--
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            345678999999999999999999854

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=90.96  E-value=0.11  Score=55.99  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+.+|.|+|.|||||||++.+|+..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~  124 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYY  124 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35778999999999999999999953

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.96  E-value=0.14  Score=46.16  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            3578999999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=90.93  E-value=0.084  Score=53.09  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+.+.|+.-+
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            4557889999999999999999998654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=90.87  E-value=0.12  Score=48.72  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVL  246 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La  246 (520)
                      ....++|.|+||||||++|..++
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            35689999999999999998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.79  E-value=0.11  Score=47.19  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..++...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.76  E-value=0.13  Score=47.69  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.++...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=90.75  E-value=0.44  Score=43.52  Aligned_cols=90  Identities=9%  Similarity=0.059  Sum_probs=59.8

Q ss_pred             CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031         57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG  135 (520)
Q Consensus        57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~  135 (520)
                      ....|+|+.|+...++.   .....+..|+++..+.+++.+|+. |+    +.+++.+.+|+..+...    .+++....
T Consensus        97 g~~vi~d~~~~~~~~~~---~~~~~~~~v~~~~~~~e~l~~Rl~~R~----~~~~~~i~~rl~~~~~~----~~~~~~~d  165 (205)
T 3tr0_A           97 GRDVLLEIDWQGARQIR---ELFPPALSIFILPPSIEALRERLIKRR----QDDTAIIEQRLALAREE----MAHYKEFD  165 (205)
T ss_dssp             TCEEEEECCHHHHHHHH---HHCTTCEEEEEECSCHHHHHHHHHTCT----TSCSSTHHHHHHHHHHH----HTTGGGCS
T ss_pred             CCeEEEEECHHHHHHHH---HhCCCcEEEEEECcCHHHHHHHHHHhC----CCCHHHHHHHHHHHHHH----HhcccCCC
Confidence            35689999888777763   233344445455556899999994 43    33456778899888544    34454443


Q ss_pred             cEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031        136 MLIAVNGERNPVEVYADFRTAVLKI  160 (520)
Q Consensus       136 ~l~~Ida~~~~eeV~~~i~~~l~~~  160 (520)
                       ++.+|.  +.+++++++.+++...
T Consensus       166 -~vi~n~--~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          166 -YLVVND--NFDQAVQNLIHIISAE  187 (205)
T ss_dssp             -EEEECS--SHHHHHHHHHHHHHHH
T ss_pred             -EEEECC--CHHHHHHHHHHHHHHH
Confidence             333444  8999999999998753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=90.74  E-value=0.11  Score=52.99  Aligned_cols=25  Identities=16%  Similarity=0.233  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++.|.|+|||||||+|..++..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.73  E-value=0.12  Score=53.33  Aligned_cols=26  Identities=12%  Similarity=0.155  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++.|+||.||||||+.+.|+--
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence            34678999999999999999999853

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=90.72  E-value=0.12  Score=53.97  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVL  246 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La  246 (520)
                      ...++.|+|+|||||||+|..|+
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            35689999999999999999776

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.68  E-value=0.13  Score=47.70  Aligned_cols=26  Identities=15%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.+|...
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999998864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=90.67  E-value=0.14  Score=57.36  Aligned_cols=35  Identities=11%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr  262 (520)
                      .++|.|+||+|||++|+.|++.+ +.  ..++++++..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~  526 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYME  526 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcc
Confidence            69999999999999999999986 64  4556666544

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=90.66  E-value=0.15  Score=51.83  Aligned_cols=26  Identities=8%  Similarity=0.132  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +...++.|.|+|||||||+|..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=90.64  E-value=0.1  Score=52.92  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+.|+|+.||||||+.+.|+..+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4579999999999999999998765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.63  E-value=0.12  Score=47.70  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..+|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999999875

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.62  E-value=0.13  Score=47.14  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.60  E-value=0.13  Score=47.18  Aligned_cols=24  Identities=8%  Similarity=0.070  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      +..+|+|+|.+|+||||+..++..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.54  E-value=0.15  Score=46.93  Aligned_cols=26  Identities=15%  Similarity=0.156  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.++...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=90.53  E-value=0.15  Score=46.11  Aligned_cols=24  Identities=29%  Similarity=0.320  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|+|+.||||||+.+.|.--+
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999997654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.51  E-value=0.1  Score=53.45  Aligned_cols=27  Identities=11%  Similarity=0.107  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+--
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence            345678999999999999999999853

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=90.50  E-value=1.7  Score=43.54  Aligned_cols=139  Identities=15%  Similarity=0.139  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      -|+|+||   ||+|+.++|.+.|++..-+++. +-+                  -+.+|+.+|-+.|.+++    .    
T Consensus       147 PvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r------------------~i~~~~fis~~~V~~vl----~----  196 (308)
T 3kfv_A          147 PVVILGP---VADIAMQKLTAEMPDQFEIAET-VSR------------------TDSPSKIIKLDTVRVIA----E----  196 (308)
T ss_dssp             CEEEEST---THHHHHHHHHHHCTTTEEECCC-C--------------------------CCCHHHHHHHH----H----
T ss_pred             eEEEeCc---cHHHHHHHHHHhCccccccccc-ccc------------------cccCCCeecHHHHHHHH----H----
Confidence            3788898   7999999999988765555442 111                  14567777766665554    3    


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hhh--ccC-CCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VLH--KGQ-IDNSVSAFRRRLELFRERTLPMLRAMDVETR  382 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~~--r~R-~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~  382 (520)
                       .++.+|||==+..   |+.+..... .+.+|||.-|.. .+.  ++| ..++++.++++++.-.    .+...|...-.
T Consensus       197 -~Gk~~ILDId~QG---a~~lk~~~~-~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~----eiE~~~~~~FD  267 (308)
T 3kfv_A          197 -KDKHALLDVTPSA---IERLNYVQY-YPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ----KLRKHSSHLFT  267 (308)
T ss_dssp             -TTCEEEECCCHHH---HHHHHHTTC-CCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH----HHHHHHGGGCS
T ss_pred             -CCCcEEEEECHHH---HHHHHhcCC-CCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH----HHHHhhhccCc
Confidence             4778999966444   344444333 346778776542 222  223 2344555666555422    22222322212


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHH
Q psy11031        383 LTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       383 l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      .+. +.+.+.+.-++++.++|..
T Consensus       268 ~vI-~VNDdle~A~~~L~~iI~~  289 (308)
T 3kfv_A          268 ATI-PLNGTSDTWYQELKAIIRE  289 (308)
T ss_dssp             EEE-EECSSSTHHHHHHHHHHHH
T ss_pred             EEE-EcCCCHHHHHHHHHHHHHH
Confidence            333 3344556667777766654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.50  E-value=0.15  Score=46.72  Aligned_cols=26  Identities=15%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.++...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=90.48  E-value=0.15  Score=48.97  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+||||||+..+|...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999865

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=90.43  E-value=0.15  Score=47.61  Aligned_cols=26  Identities=27%  Similarity=0.132  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...++++.|++||||||.+-.++.++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            35789999999999999998888765

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=90.39  E-value=0.12  Score=51.54  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.+|.++|++||||||++..|+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~  121 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYF  121 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.28  E-value=0.14  Score=47.06  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|+|+|.+|+||||++.+|...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            34578999999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.27  E-value=0.097  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=11.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...+|+|+|.+|+||||+..++...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3578999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.26  E-value=0.16  Score=52.34  Aligned_cols=27  Identities=22%  Similarity=0.188  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+|+.||||||+.+.|+.-
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence            455778999999999999999999853

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.26  E-value=0.16  Score=52.87  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      -....++.|+||.||||||+.+.|+.
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhC
Confidence            45578899999999999999999985

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=90.22  E-value=0.16  Score=51.44  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|.++|+||+||||++..|+..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            45688999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	520
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	1e-16
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	2e-05
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	9e-15
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	4e-04
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-14
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	4e-05
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-14
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	8e-14
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-06
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-13
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	4e-06
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	2e-10
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	2e-04
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	3e-10
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	0.001
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	2e-09
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	1e-05
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	3e-09
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	4e-08
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	3e-05
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-05
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	4e-05
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	0.001
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	0.001

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 76.1 bits (186), Expect = 1e-16
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 8/189 (4%)

Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
           PL V + G P S K   C+ +   Y     IS G LLR       +      R K  +  
Sbjct: 3   PLKVMISGAPASGKGTQCELIKTKY-QLAHISAGDLLRAEIAAGSE---NGKRAKEFMEK 58

Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCS 343
           G  V  ++V+++V   +++    E +G ++DG+PR  SQ +  E         ++L    
Sbjct: 59  GQLVPDEIVVNMVKERLRQPDAQE-NGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPD 117

Query: 344 KLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403
           +L++ +   D++    + RLE + +    +L     E  +  V GD  +  V  + + +L
Sbjct: 118 ELLVERVVFDDTEEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELL 175

Query: 404 KKIIDDLEN 412
             I++    
Sbjct: 176 GSILEKKNE 184

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 8/170 (4%)

Query: 2   YGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFL 61
           Y     +   L         +          K         V  V     +       +L
Sbjct: 27  YQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWL 86

Query: 62  ISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFY 121
           + GYPR+    +         +  IL+     LL  ++              ++ L  +Y
Sbjct: 87  LDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVV-----FDDTEEKVKLRLETYY 141

Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK-NNVVPGS 170
           QN+  +   +    +++ V G+     V+A     +  IL K N +V  +
Sbjct: 142 QNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST 189

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 9e-15
 Identities = 39/195 (20%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
           PLVV+V+GGPG+ K   C ++++ Y  +T +S G+LLR     ++        I+  +  
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLR--DERKNPDSQYGELIEKYIKE 57

Query: 285 GDFVNRDVVLDIV--YAEMKKTKYTEADGIVIDGFPREMSQL------------IDFENK 330
           G  V  ++ + ++    +       + +  +IDGFPR    L            + F   
Sbjct: 58  GKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 117

Query: 331 YQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT 390
           +  +  + +  C +     G+ D++  +  +R++ + + T P++   +   ++  +D   
Sbjct: 118 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK 177

Query: 391 QLPQVREEFERVLKK 405
            + +V +E  ++  K
Sbjct: 178 SVDEVFDEVVQIFDK 192

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 9/45 (20%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 119 NFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163
            + Q+  P+ D +++ G +  ++  ++  EV+ +    V++I +K
Sbjct: 152 TYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDE----VVQIFDK 192

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.4 bits (171), Expect = 1e-14
 Identities = 44/194 (22%), Positives = 96/194 (49%), Gaps = 12/194 (6%)

Query: 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV 282
           +   V++V+GGPG+ K   C+K+++DY ++  +S G LLR          G    IK+ +
Sbjct: 6   DQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRAEQGRAGSQYGE--LIKNCI 62

Query: 283 SAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDC 342
             G  V +++ L ++   +           +IDGFPR+M Q I FE        ++  DC
Sbjct: 63  KEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDC 122

Query: 343 SKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
            + ++ +         G+ D+++ + ++R   F+E ++P++   + ++++  V  D  + 
Sbjct: 123 PEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVE 182

Query: 394 QVREEFERVLKKII 407
            V ++ +  ++  +
Sbjct: 183 DVYKDVQDAIRDSL 196

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 60  FLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLL-ERQIDYGAKLGHVILSLA--RME 116
           FLI G+PR M   + +   I     ++     + ++ ER ++ G   G    ++   +  
Sbjct: 92  FLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKR 151

Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL 161
              F +   PV ++F+ +  ++ V  +R+  +VY D + A+   L
Sbjct: 152 FNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDSL 196

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 70.0 bits (170), Expect = 1e-14
 Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 21/199 (10%)

Query: 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY-FANIEDDGEGLNSRIK 279
           E++ P VV+V+GGPGS K   C  +++D+  W  +S G LLR    +   DGE + + IK
Sbjct: 2   EKSKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLRQEQQSGSKDGEMIATMIK 60

Query: 280 SSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMIL 339
           +       V   ++ + + A   K         ++DGFPR       +E   +       
Sbjct: 61  NGEIVPSIVTVKLLKNAIDANQGK-------NFLVDGFPRNEENNNSWEENMKDFVDTKF 113

Query: 340 ---IDCSKLVL---------HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVD 387
               DC + V+           G+ D+++ + ++R   F  +T  ++   +   ++ I+ 
Sbjct: 114 VLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP 173

Query: 388 GDTQLPQVREEFERVLKKI 406
            +  + +V  + E + K +
Sbjct: 174 ANRDVNEVYNDVENLFKSM 192

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 67.6 bits (164), Expect = 8e-14
 Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 3/179 (1%)

Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY-FANIEDDGEGLNSRIKSSVSAGD 286
           + ++G PG+ K     ++++ Y     IS G + R       + G    S +       D
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKY-GTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346
            V   +V + +        +   DG        E    +  +   +I   + +    + +
Sbjct: 62  EVTIGIVRERLSKSDCDNGFLL-DGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEEL 120

Query: 347 LHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405
           + +   D++      RLE+   +T P+L   D +  L  ++G   +  V ++ + +L+ 
Sbjct: 121 IARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 179

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 47  LMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLG 106
           +   +  S     FL+ G+PR +         +  +   I       + E++        
Sbjct: 68  VRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQV-EKEELIARLTA 126

Query: 107 HVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
                     L        P+  F+D + +L+ +NG+++  +V+ D    +  IL  N
Sbjct: 127 DDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKD----LDVILQGN 180

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 67.2 bits (163), Expect = 1e-13
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
           + ++G PG+ K    +K++  Y     IS G + R           L  + K  +  GD 
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAY-GIPHISTGDMFRAAMKEGTP---LGLQAKQYMDRGDL 58

Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL 347
           V  +V + IV   + K      +G ++DGFPR ++Q    E         +       V 
Sbjct: 59  VPDEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVR 116

Query: 348 HKGQIDNSVS-----AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERV 402
               ++   +         RLE+  ++  P++   + +  L  ++G+  + +V  +   +
Sbjct: 117 QDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIREL 176

Query: 403 LKKI 406
           L  +
Sbjct: 177 LGGL 180

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 47  LMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLG 106
           ++ E       +   +           E  + +    G  L       + + +       
Sbjct: 67  IVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTA 126

Query: 107 HVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163
               +     L    + + P+ DF++Q+G L  +NGE++  +V+AD    + ++L  
Sbjct: 127 DDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFAD----IRELLGG 179

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 14/191 (7%)

Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
             +++VVGGPGS K   C+K++Q Y  +T +S G LLR   +    G      +   +  
Sbjct: 8   SKIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLRAEVS---SGSARGKMLSEIMEK 63

Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK 344
           G  V  + VLD++   M     T   G +IDG+PRE+ Q  +FE K      ++ +D   
Sbjct: 64  GQLVPLETVLDMLRDAMVAKVDTS-KGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGP 122

Query: 345 LVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQV 395
             + K         G++D++    ++RLE + + T P++   +    +  V+ +  +  V
Sbjct: 123 ETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDV 182

Query: 396 REEFERVLKKI 406
             +    L  +
Sbjct: 183 FSQVCTHLDTL 193

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 42  TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDY 101
            +  +    +     +K FLI GYPR ++   E+  KI     ++ +      + +++  
Sbjct: 72  VLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLK 131

Query: 102 GAKL---GHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158
             +            +  L  +Y+   PV  F+++RG++  VN E +  +V++     V 
Sbjct: 132 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQ----VC 187

Query: 159 KILNK 163
             L+ 
Sbjct: 188 THLDT 192

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
           V ++G PG+ K     K+ +      QIS G+L R           L    K  + AGD 
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFRRNIEEGTK---LGVEAKRYLDAGDL 58

Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMI----LIDCS 343
           V  D+  ++V   +       A+G ++DG+PR + Q        +     I        S
Sbjct: 59  VPSDLTNELVDDRLNNPDA--ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS 116

Query: 344 KLVLHK-----GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREE 398
           + VL +     G+ D++      R++++R+ T P+L       +L  VD    + +V   
Sbjct: 117 EEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFAR 174

Query: 399 FERVLKK 405
             R L K
Sbjct: 175 ALRALGK 181

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 14  FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVV 73
           F  +        +     +     + S    E++   +    AA  F++ GYPR++    
Sbjct: 35  FRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAK 94

Query: 74  EYSDKIKTINGVILIAWRQSLLERQIDYGAKL---GHVILSLARMELANFYQNVTPVTDF 130
              + ++     I       + E  +    K          +    +  +     P+ ++
Sbjct: 95  ALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEY 154

Query: 131 FDQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163
           +  R  L  V+      EV+A      L+ L K
Sbjct: 155 Y--RDQLKTVDAVGTMDEVFAR----ALRALGK 181

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 54.9 bits (131), Expect = 2e-09
 Identities = 32/186 (17%), Positives = 74/186 (39%), Gaps = 16/186 (8%)

Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PG+ K     K+ +++     ++ G +LR       +      ++K+++ AG  V+
Sbjct: 8   LLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLRAMVASGSEL---GKKLKATMDAGKLVS 63

Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK 349
            ++VL+++   ++       +G ++DGFPR + Q    ++  +     +       +   
Sbjct: 64  DEMVLELIEKNLETPPC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 121

Query: 350 GQI----------DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399
             I          D++  A + RLE +  +T P++         + +D       V    
Sbjct: 122 LLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASI 181

Query: 400 ERVLKK 405
                K
Sbjct: 182 LAAFSK 187

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 43  VTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW----RQSLLERQ 98
           V E++   ++  P    FL+ G+PR +R      D ++     +          SLL R+
Sbjct: 67  VLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRR 126

Query: 99  IDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158
           I              ++ L  ++   TP+ +++ +RG+  A++  + P  V+A     +L
Sbjct: 127 ITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFAS----IL 182

Query: 159 KILNK 163
              +K
Sbjct: 183 AAFSK 187

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 54.5 bits (130), Expect = 3e-09
 Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 10/178 (5%)

Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
           ++G PGS K  +  ++ + +     +S G LL     +     G+    K+ +  G  + 
Sbjct: 11  IMGAPGSGKGTVSSRITKHF-ELKHLSSGDLL-RDNMLRGTEIGV--LAKTFIDQGKLIP 66

Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK 349
            DV+  +V  E+K          ++DGFPR + Q    +  YQI    ++       + K
Sbjct: 67  DDVMTRLVLHELKNLTQ---YNWLLDGFPRTLPQAEALDRAYQID--TVINLNVPFEVIK 121

Query: 350 GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407
            ++ +      +RL+ +  +T P+L     +  L    G T+  ++       L+  +
Sbjct: 122 QRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSG-TETNKIWPHVYAFLQTKL 178

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (121), Expect = 4e-08
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 7/180 (3%)

Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
           + ++G PG+ K      + + + +   ++ G +LR                K  +  G  
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQL---GLEAKKIMDQGGL 60

Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN--KYQIHPPMILIDCSKL 345
           V+ D++++++  E+      + +G ++DGFPR + Q    +   K Q  P    I+    
Sbjct: 61  VSDDIMVNMIKDELTNNPACK-NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD 119

Query: 346 VLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405
                    +  A ++RL  +  +T P++           VD       V  +    L K
Sbjct: 120 DELLVARITNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 179

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 51  MKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVIL 110
                    F++ G+PR +    +    +K     +  A    +  +  D          
Sbjct: 75  TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKA----IELKVDDELLVARITNA 130

Query: 111 SLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
              +  LA ++    P+ DF+ + G+   V+  + P  V+AD    +L  L KN
Sbjct: 131 DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWAD----ILNKLGKN 180

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 22/196 (11%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSV 282
           +  V G PG  KS +  KV +       N   I+ G  +   A      +  +   K SV
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 283 SAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPR------EMSQLIDFENKYQIHPP 336
                +  D    I     ++ +      + ID           +  L  +         
Sbjct: 63  EKQKKLQIDAAKGIA----EEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSV 118

Query: 337 MILIDCSKLVLHKGQ--------IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDG 388
           + L++    ++   Q         D S  +       F          +   T   IV+ 
Sbjct: 119 IFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNV 178

Query: 389 DTQLPQVREEFERVLK 404
           +        E  R +K
Sbjct: 179 EGDPSIAANEIIRSMK 194

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 22/191 (11%), Positives = 55/191 (28%), Gaps = 16/191 (8%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           VV V G PG   +   Q    D      ++   +       E   E      +  +   D
Sbjct: 3   VVVVTGVPGVGSTTSSQL-AMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 61

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPR------EMSQLIDFENKYQIHPPMILI 340
              +  +  +   ++   +  +   + +D           +  L  +         +I++
Sbjct: 62  PETQKRIQKMAGRKIA--EMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 119

Query: 341 DCSKLVLHKGQ-------IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
           + +   +   +        D   ++   + +            +   T   + + +  L 
Sbjct: 120 ETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLD 179

Query: 394 QVREEFERVLK 404
           Q  EE   VL+
Sbjct: 180 QAVEELTNVLR 190

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 12/148 (8%)

Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
           ++  +G PGS KS   ++ +   P +  I+     +     E+  E   ++ K      +
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK------E 57

Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI------ 340
            +   +  D   + +      +   I       E     +   K         +      
Sbjct: 58  GIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117

Query: 341 DCSKLVLHKGQIDNSVSAFRRRLELFRE 368
           +  K    +G     +   R   +  RE
Sbjct: 118 ELVKRNSKRGTKAVPIDVLRSMYKSMRE 145

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 28  VSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVIL 87
             + +     ++ + V  ++   +        FL+ G+PR +       +    ++ V+ 
Sbjct: 49  AKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLE 108

Query: 88  IAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM-----LIAVNG 142
                 L+  +I    +   V     R  L  ++Q   P+  ++ +           V+G
Sbjct: 109 FDVPDELIVDRIVKDDQEETV-----RKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDG 163

Query: 143 ERNPVEVYADFRTAVLKIL 161
            +   EV AD    + KIL
Sbjct: 164 TKPVAEVRAD----LEKIL 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.97
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.97
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.97
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.97
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.96
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.96
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.96
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.96
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.86
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.85
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.82
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.82
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.81
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.8
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.79
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.77
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.74
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.74
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.54
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.46
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.44
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.43
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.37
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.37
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.3
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.24
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.23
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.12
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.09
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.99
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.87
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.84
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.78
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.75
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.73
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.69
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.58
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.56
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.56
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.54
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.48
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.45
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.37
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.29
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.26
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.06
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.05
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.79
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.7
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.62
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.61
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.43
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.26
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.23
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.12
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	97.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.05
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.94
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.82
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	96.77
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.77
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.76
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.72
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.71
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.7
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.68
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.67
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.62
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.6
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.4
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.37
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.28
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.2
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.13
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.04
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.94
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.94
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.92
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.9
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.84
d1okkd2	207	GTPase domain of the signal recognition particle r	95.78
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.73
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.7
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.58
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.52
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.44
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.33
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.33
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.3
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.07
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.03
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.99
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.89
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.86
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	94.76
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.48
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.44
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.39
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.32
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.07
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.04
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.93
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.9
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.79
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.75
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.72
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.71
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.7
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.66
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.61
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.6
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.35
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.29
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.22
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.2
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.11
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.11
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.05
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.05
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.99
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.88
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.84
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.82
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	92.81
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.75
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.69
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.69
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.66
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.62
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.62
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.61
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.54
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.53
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.51
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.49
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.48
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.44
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.42
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.39
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.33
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.32
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.27
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	92.21
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.06
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.98
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	91.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.89
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	91.89
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.88
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.88
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.77
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.74
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.67
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.64
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.6
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.59
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.54
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.53
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.46
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	91.43
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	91.38
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.32
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.26
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.23
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.22
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.2
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.16
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.11
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.07
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.94
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.94
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.86
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.75
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.73
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.63
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.52
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.5
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.37
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.36
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.11
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.06
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.58
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	89.56
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	89.35
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.3
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.26
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.22
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.1
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.03
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	88.99
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.86
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.74
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.43
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	88.31
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.16
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.84
d1tuea_	205	Replication protein E1 helicase domain {Human papi	87.84
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	87.82
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	87.74
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	87.56
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	87.49
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	87.33
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.04
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.01
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.92
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	86.29
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.17
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.12
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	85.97
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.72
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	85.63
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	85.58
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.22
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	84.31
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.28
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.19
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.11
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	83.86
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	83.78
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	83.09
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.73
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	82.23
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	81.49
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.29
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	80.17
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	80.05
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	80.01

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.8e-33  Score=262.58  Aligned_cols=178  Identities=27%  Similarity=0.508  Sum_probs=163.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      .++++|+|+|||||||||||++|+++| |+.|||+|+++|   +.....+..|..+.+++..|..+|++++..++..++.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~-g~~~is~g~llr---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR---AEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMV   81 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT-CCEEEEHHHHHH---HHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh-CCeeEeccHHHH---HHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhh
Confidence            467899999999999999999999998 999999999999   7777888999999999999999999999999999998


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh---------hccCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL---------HKGQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~---------~r~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      . .....+||||||||++..||+.|+..+..+..+++++|+.+..         ..+|.+|+++.+++|++.|++++.++
T Consensus        82 ~-~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~  160 (194)
T d3adka_          82 A-KVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPV  160 (194)
T ss_dssp             T-TTTTCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHH
T ss_pred             h-cccccccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence            3 3344789999999999999999999999888999999988653         23688899999999999999999999


Q ss_pred             HHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ++||++.+.++.|||++++++||++|.+.|.+
T Consensus       161 ~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         161 IAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.97  E-value=6.9e-32  Score=254.17  Aligned_cols=175  Identities=21%  Similarity=0.380  Sum_probs=156.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      .+..+|+|+|||||||||+|++|+++| |+.|||+|+++|   ++.+..++.|..++..+..|..+|++++..++.+++.
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~-g~~~is~gdllr---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~   79 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF-ELKHLSSGDLLR---DNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELK   79 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB-CCEEEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHHHHH---HHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhh
Confidence            345789999999999999999999998 999999999999   7778889999999999999999999999999999998


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETR  382 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~  382 (520)
                        .. ...|||||||||+..||+.|++.+ .++.||+|+|+.+.+.+ |.+++.+.+++|++.|++++.++++||++++.
T Consensus        80 --~~-~~~~~ildGfPr~~~q~~~l~~~~-~~~~vi~L~v~~~~l~~-R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~~~~  154 (189)
T d2ak3a1          80 --NL-TQYNWLLDGFPRTLPQAEALDRAY-QIDTVINLNVPFEVIKQ-RLTDRPETVVKRLKAYEAQTEPVLEYYRKKGV  154 (189)
T ss_dssp             --HH-TTSCEEEESCCCSHHHHHHHHTTC-CCCEEEEEECCHHHHHH-HHTGSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             --hh-hhcCcccccccchhhHHHHhhhcC-cceEEEEEeccchhhhh-hcccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence              33 457899999999999999998754 56789999999877543 46778999999999999999999999999899


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031        383 LTIVDGDTQLPQVREEFERVLKKII  407 (520)
Q Consensus       383 l~~IDa~~~~e~V~~~I~~~I~~~i  407 (520)
                      ++.|||+ ++++|+++|.+.|.+.+
T Consensus       155 l~~idg~-~~~eV~~~I~~~i~~~l  178 (189)
T d2ak3a1         155 LETFSGT-ETNKIWPHVYAFLQTKL  178 (189)
T ss_dssp             EEEEECS-SHHHHHHHHHHHHHTTS
T ss_pred             EEEECCC-ChHHHHHHHHHHHHHHh
Confidence            9999998 57899999999887644

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.3e-32  Score=251.72  Aligned_cols=171  Identities=25%  Similarity=0.437  Sum_probs=157.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|||||||||||++|+++| |+.|+|+|+++|   +..+.+++.+..+++++.+|..+|++++..++..++.  ..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~-~~~~i~~~~llr---~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~--~~   75 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLR---AAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIA--QE   75 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHT--SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCceechhhHhH---HhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhc--cc
Confidence            69999999999999999999998 999999999999   7777889999999999999999999999999999998  66


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-hccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhC-----
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVE-----  380 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~-----  380 (520)
                      .+.+|||+||||++..|+..|.+....++.||+|+|+++.+ .|.+.+|+++.+++|++.|++.+.++++||.+.     
T Consensus        76 ~~~~g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~  155 (179)
T d1e4va1          76 DCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGN  155 (179)
T ss_dssp             GGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred             ccccceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            67889999999999999999999988888999999999865 455678899999999999999999999999753     


Q ss_pred             CCEEEEECCCCHHHHHHHHHHHH
Q psy11031        381 TRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       381 ~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ..++.|||++++++|+++|...|
T Consensus       156 ~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         156 TKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             CEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHh
Confidence            35899999999999999998765

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.97  E-value=2.3e-31  Score=249.02  Aligned_cols=176  Identities=20%  Similarity=0.378  Sum_probs=157.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      ++.+|+|+|||||||||||++||++| |+.||++|+++|   ++...++..|..+..++..|..+|++.+..++..++. 
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~-g~~~i~~gdllr---~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~-   76 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLR---AMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLE-   76 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHH---HHHhccCcccchhhhhhccCCccccceeeeeehhhhc-
Confidence            45678899999999999999999998 999999999999   7777889999999999999999999999999999998 


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhhh-----c-cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        304 TKYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVLH-----K-GQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~~-----r-~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                       ...+.+||||||||++..||..|...+.    .+..+++|+|++..+.     | .+.+++.+.+++|++.|++++.++
T Consensus        77 -~~~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~  155 (190)
T d1ak2a1          77 -TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPL  155 (190)
T ss_dssp             -SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence             6667899999999999999999987543    4556899999986532     2 346788999999999999999999


Q ss_pred             HHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ++||.+++.++.|||++++++|+++|.+.|..
T Consensus       156 ~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         156 VEYYSKRGIHSAIDASQTPDVVFASILAAFSK  187 (190)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-31  Score=248.50  Aligned_cols=182  Identities=24%  Similarity=0.564  Sum_probs=161.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ++..++|+|+|||||||||||++|+++| |+.|||+|+++|.  +....++..|+.++.++..|..+|+..+..++..++
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~-g~~~is~gdl~R~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   81 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRA--EQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAI   81 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHHHHH--HHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEehhHHHHH--HhhhcccHHHHHHHHhhhccccccchhHHHHHHHHH
Confidence            4568899999999999999999999998 9999999999993  233467899999999999999999999999998877


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---------ccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---------KGQIDNSVSAFRRRLELFRERTLP  372 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---------r~R~dD~~e~~~~Rl~~f~~~~~~  372 (520)
                      .........||||||||++.+||..+...+..++.+++|+++++.+.         .+|.++..+.+++|++.|++++.+
T Consensus        82 ~~~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~  161 (196)
T d1ukza_          82 SDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP  161 (196)
T ss_dssp             HHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred             HhhhccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHH
Confidence            73122336799999999999999999999988899999999987532         257889999999999999999999


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      +++||+.++.++.|||++++++||++|.+.|.+.
T Consensus       162 l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         162 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            9999999899999999999999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.97  E-value=6.9e-31  Score=246.34  Aligned_cols=179  Identities=23%  Similarity=0.542  Sum_probs=159.7

Q ss_pred             cCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031        220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      |+..+|++|+|+|||||||||+|++|+++| |+.||++|+++|   ++...+++.|..++.++..|..+|+..+..++..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~-g~~~i~~g~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLR---QEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKN   76 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEchhhHHH---HHhhhhhhhhhhhhhHhhhccccchHHHHHHHHH
Confidence            356789999999999999999999999998 999999999999   7777888999999999999999999999999998


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh---------ccCCCCCHHHHHHHHHHHH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH---------KGQIDNSVSAFRRRLELFR  367 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~---------r~R~dD~~e~~~~Rl~~f~  367 (520)
                      ++.  . ...+|||+||||++.+|++.|+....   .++.||+|+|+++.+.         ..|.+|+.+.+++|++.|+
T Consensus        77 ~~~--~-~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~  153 (194)
T d1qf9a_          77 AID--A-NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFN  153 (194)
T ss_dssp             HHH--T-STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHH
T ss_pred             Hhh--h-hhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHH
Confidence            887  2 34689999999999999999986543   3556999999997642         1467889999999999999


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ++..++++||++.+.++.|||++++++|+++|.+.|.+
T Consensus       154 ~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         154 VQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            99999999999989999999999999999999988765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.97  E-value=5.3e-31  Score=245.13  Aligned_cols=172  Identities=24%  Similarity=0.422  Sum_probs=156.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|||||||||||++|+++| |+.|+|+|+++|   .+...+++.|..++.++.+|..+|+.....++..++.  ..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~-g~~~is~gdllr---~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~--~~   75 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY-GTPHISTGDMFR---AAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLS--KS   75 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT--SS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCceeeHHHHHH---HhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhc--cc
Confidence            69999999999999999999998 999999999999   7777788999999999999999999999999999998  66


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcCC----CCCEEEecCChhhh-hccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCC
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQI----HPPMILIDCSKLVL-HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET  381 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~----p~~VI~Ld~~~~~~-~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~  381 (520)
                      .+.+|||+||||++..|+..|.+.+..    +..+++|+++.+.+ .|.|.+++++.+++|++.|++++.++++||++.+
T Consensus        76 ~~~~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~~e~i~~R~~~y~~~~~~i~~~y~~~~  155 (182)
T d1s3ga1          76 DCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKE  155 (182)
T ss_dssp             TTSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            778999999999999999999875543    34577889988754 4567888999999999999999999999999999


Q ss_pred             CEEEEECCCCHHHHHHHHHHHHH
Q psy11031        382 RLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       382 ~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .++.|||++++++|+++|...|.
T Consensus       156 ~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         156 VLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHH
Confidence            99999999999999999988775

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=243.10  Aligned_cols=177  Identities=24%  Similarity=0.544  Sum_probs=154.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      |++|+|+|||||||||||++|+++| |+.|||+|+++|   ++. ...++.++.+..++.+|..+|+..+..++..++..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~-g~~~i~~g~llR---~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~   76 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLR---DERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQ   76 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-CCceEcHHHHHH---HHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcc
Confidence            7899999999999999999999998 999999999999   444 35688899999999999999999999999988862


Q ss_pred             cc--cCCCcEEEEeCCCCCHHHHHHHHhhcCC---CCCEEEecCChhhh---------hccCCCCCHHHHHHHHHHHHHH
Q psy11031        304 TK--YTEADGIVIDGFPREMSQLIDFENKYQI---HPPMILIDCSKLVL---------HKGQIDNSVSAFRRRLELFRER  369 (520)
Q Consensus       304 ~~--~~~~~G~ILDGFPrt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~---------~r~R~dD~~e~~~~Rl~~f~~~  369 (520)
                      ..  ....+||++|||||+..|++.|+..+..   ++.||+++|+.+..         ..+|.+++.+.+++|++.|+++
T Consensus        77 ~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~  156 (194)
T d1teva_          77 TMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS  156 (194)
T ss_dssp             HHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             cchhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHH
Confidence            11  1236899999999999999999876543   34589999998652         1257889999999999999999


Q ss_pred             hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      +.++++||++.+.++.|||++++++|+++|...|..
T Consensus       157 ~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         157 TKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            999999999989999999999999999999988764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.6e-30  Score=236.53  Aligned_cols=172  Identities=19%  Similarity=0.349  Sum_probs=151.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      .+|+|+|||||||||||++|+++| |+.||+++++++   +....+++.|..++.++..|..+|+..+..++..++.+ .
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~-g~~~i~~~d~~~---~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~   77 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLR---SQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN-N   77 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-C
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-CCceEeccccce---eccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhc-C
Confidence            469999999999999999999998 999999999999   77778899999999999999999999999999999983 3


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCC
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET  381 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~  381 (520)
                      ....+|||+||||++..||+.++..+    ..++.||+|+|+++.+.++  -+..+.+.+|++.|++++.++.++|++++
T Consensus        78 ~~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R--~~~~~~~~~r~~~y~~~~~~v~~~y~~~~  155 (180)
T d1akya1          78 PACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR--ITNADALKKRLAAYHAQTEPIVDFYKKTG  155 (180)
T ss_dssp             GGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH--HHSHHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred             ccccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhc--ccccccccchHHHHHHHHHHHHHHHHhcC
Confidence            33478999999999999999876643    3466799999999875432  23567899999999999999999999989


Q ss_pred             CEEEEECCCCHHHHHHHHHHHHH
Q psy11031        382 RLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       382 ~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .++.|||++++++|+++|.+.|.
T Consensus       156 ~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         156 IWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             CEEEEETTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc
Confidence            99999999999999999988774

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=1.8e-29  Score=236.15  Aligned_cols=181  Identities=25%  Similarity=0.453  Sum_probs=161.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK  303 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~  303 (520)
                      .|.+|+|+|||||||||+|++|+++| |+.|+|+|++++   +.....++....+..++..|..++.+....++..++. 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~-~~~~is~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-   76 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY-QLAHISAGDLLR---AEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLR-   76 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH-CCEECCHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH-CCcEEehhHHHH---HhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhh-
Confidence            47789999999999999999999998 999999999999   6667778888999999999999999998888887777 


Q ss_pred             cccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-hccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCC
Q psy11031        304 TKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET  381 (520)
Q Consensus       304 ~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~  381 (520)
                       ...+ .+|||+||||++..|+..|+.....|+.+|+|+++++.+ .|.+.+++.+.+++|++.|++++.++.++|+  +
T Consensus        77 -~~~~~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y~--~  153 (189)
T d1zaka1          77 -QPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYE--N  153 (189)
T ss_dssp             -SHHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHTTC--C
T ss_pred             -hcccccCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhC--C
Confidence             3333 579999999999999999999888888899999998765 4556677889999999999999999999995  5


Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11031        382 RLTIVDGDTQLPQVREEFERVLKKIIDDLEN  412 (520)
Q Consensus       382 ~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~  412 (520)
                      .++.|||++++++|+++|.+.|...+++.-+
T Consensus       154 ~~~~Id~~~~idev~~~I~~~l~~il~~~~~  184 (189)
T d1zaka1         154 IIVKVQGDATVDAVFAKIDELLGSILEKKNE  184 (189)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHhhhhhh
Confidence            7899999999999999999999998887754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.5e-29  Score=234.74  Aligned_cols=169  Identities=26%  Similarity=0.433  Sum_probs=153.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|||||||||||++|+++| |+.||+++++++   ++....++.|..++.++++|..+|++++.+++..++.  ..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~-g~~~i~~~~l~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~   75 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFR---RNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLN--NP   75 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT--SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCceEchHHHHH---HHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhh--Cc
Confidence            69999999999999999999998 999999999999   7777778899999999999999999999999999998  66


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHHHHHHh
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLPMLRAM  377 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y  377 (520)
                      .+..|||+||||++..|+..|.+...    .++.+++|+|+++.+     +|+|.+++.+.+++|++.|++++.++++||
T Consensus        76 ~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y  155 (181)
T d2cdna1          76 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYY  155 (181)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHT
T ss_pred             cccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999987543    456799999999764     457788999999999999999999999999


Q ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        378 DVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       378 ~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ++  .++.|||++++++|+++|...|
T Consensus       156 ~~--~~~~Id~~~s~eeV~~~I~~~l  179 (181)
T d2cdna1         156 RD--QLKTVDAVGTMDEVFARALRAL  179 (181)
T ss_dssp             TT--TEEEEECCSCHHHHHHHHHHHT
T ss_pred             hc--CeEEEECCCCHHHHHHHHHHHh
Confidence            65  5899999999999999998776

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=3.5e-29  Score=231.29  Aligned_cols=174  Identities=24%  Similarity=0.415  Sum_probs=157.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY  306 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~  306 (520)
                      +|+|+|||||||||+|++|+++| |+.||++|++++   ++....++.|..++.++.+|+.+|+.....++..++.  ..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~-~~~~i~~~~ll~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~   75 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY-GIPHISTGDMFR---AAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLS--KD   75 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT--SG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCceechhHHHH---HhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhh--ch
Confidence            69999999999999999999998 999999999999   7777788999999999999999999999999999988  67


Q ss_pred             CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-hccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCC
Q psy11031        307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET  381 (520)
Q Consensus       307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~  381 (520)
                      .+..|||++|||++..++..++....    .++.+++|+|+.+.. .|...+++++.+++|++.|++++.++++||++.+
T Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~e~~~~Rl~~y~~~~~~l~~~y~~~~  155 (182)
T d1zina1          76 DCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKG  155 (182)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             hhhcCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77899999999999999998887644    345689999998764 4445678899999999999999999999999989


Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031        382 RLTIVDGDTQLPQVREEFERVLKKI  406 (520)
Q Consensus       382 ~l~~IDa~~~~e~V~~~I~~~I~~~  406 (520)
                      .+++|||++++++|+++|.+.|.+.
T Consensus       156 ~~~~Id~~~~~eeV~~~I~~~L~~l  180 (182)
T d1zina1         156 YLRNINGEQDMEKVFADIRELLGGL  180 (182)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=3.6e-22  Score=186.92  Aligned_cols=148  Identities=22%  Similarity=0.372  Sum_probs=130.3

Q ss_pred             cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHHhc
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSDKI   79 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~~~   79 (520)
                      -++++ |++.|++++..+.++          ..+|.++||+++.+++.+++.... ..+||||||||||..||..|...+
T Consensus        31 ~~g~~-~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ildg~pr~~~qa~~~~~~~  109 (194)
T d3adka_          31 KYGYT-HLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI  109 (194)
T ss_dssp             HTCCE-EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTTCSCEEEESCCSSHHHHHHHHHHT
T ss_pred             HhCCe-eEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccccccceeeeccchhHHHHHHHHHh
Confidence            35788 999999999877665          357789999999999999997654 588999999999999999998889


Q ss_pred             CCcCEEEEEEcCHHHHHHHhh-hCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         80 KTINGVILIAWRQSLLERQID-YGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        80 ~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                      ..+..++++.++.+++.+|.. +....+|.  +++.+++|++.|++++.|+++||++.+.++.|||++++++||++|++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~  189 (194)
T d3adka_         110 GQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTH  189 (194)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             CCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence            999999999999999999983 33333555  378899999999999999999999999999999999999999999999


Q ss_pred             HHH
Q psy11031        157 VLK  159 (520)
Q Consensus       157 l~~  159 (520)
                      |++
T Consensus       190 i~~  192 (194)
T d3adka_         190 LDT  192 (194)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.86  E-value=1.5e-21  Score=182.79  Aligned_cols=142  Identities=13%  Similarity=0.292  Sum_probs=122.7

Q ss_pred             cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK   80 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~   80 (520)
                      -++++ |+++|+++++.+.+.          ...|.++||+++..++.+++... ...|||||||||+..||.. ++...
T Consensus        29 ~~g~~-~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~-~~~~~ildGfPr~~~q~~~-l~~~~  105 (189)
T d2ak3a1          29 HFELK-HLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL-TQYNWLLDGFPRTLPQAEA-LDRAY  105 (189)
T ss_dssp             HBCCE-EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH-TTSCEEEESCCCSHHHHHH-HHTTC
T ss_pred             HHCCe-EEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh-hhcCcccccccchhhHHHH-hhhcC
Confidence            35788 999999998765433          34667999999999999999763 5689999999999999954 55677


Q ss_pred             CcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI  160 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~  160 (520)
                      .|+.||+|+|+++++.+|+...       .+.+++|++.|++++.|+++||++.+++++|||+. +++||++|.+.|+..
T Consensus       106 ~~~~vi~L~v~~~~l~~R~~~r-------~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg~~-~~eV~~~I~~~i~~~  177 (189)
T d2ak3a1         106 QIDTVINLNVPFEVIKQRLTDR-------PETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTE-TNKIWPHVYAFLQTK  177 (189)
T ss_dssp             CCCEEEEEECCHHHHHHHHTGS-------HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSS-HHHHHHHHHHHHHTT
T ss_pred             cceEEEEEeccchhhhhhcccc-------hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCC-hHHHHHHHHHHHHHH
Confidence            9999999999999999999432       45889999999999999999999999999999995 799999999999988


Q ss_pred             hcc
Q psy11031        161 LNK  163 (520)
Q Consensus       161 ~~~  163 (520)
                      +..
T Consensus       178 l~~  180 (189)
T d2ak3a1         178 LPQ  180 (189)
T ss_dssp             SCB
T ss_pred             hhc
Confidence            855

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.86  E-value=2.5e-21  Score=180.11  Aligned_cols=148  Identities=22%  Similarity=0.371  Sum_probs=126.8

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc--
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI--   79 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~--   79 (520)
                      ++++ |+++|+++++....+          .+.|..+|++++..++..+|....+.+|||||||||+..||..|.+.+  
T Consensus        27 ~g~~-~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~~g~ii~g~pr~~~qa~~l~~~~~~  105 (190)
T d1ak2a1          27 FCVC-HLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK  105 (190)
T ss_dssp             HTCE-EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             hCCe-EEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccccCceeecccccchhHHHHHHHHhhh
Confidence            4788 999999998755443          236669999999999999998766789999999999999998776643  


Q ss_pred             --CCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         80 --KTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        80 --~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                        ..+.+++.|+|+++.+.+|+..+......+++.+++|++.|++++.|+++||++.++++.|||+++++|||++|+++|
T Consensus       106 ~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l  185 (190)
T d1ak2a1         106 RKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF  185 (190)
T ss_dssp             HTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence              578899999999999999995433223345889999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q psy11031        158 LKI  160 (520)
Q Consensus       158 ~~~  160 (520)
                      ...
T Consensus       186 ~k~  188 (190)
T d1ak2a1         186 SKA  188 (190)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.7e-21  Score=179.67  Aligned_cols=140  Identities=16%  Similarity=0.267  Sum_probs=121.8

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~   81 (520)
                      ++++ |++.|++++...+++          .++|.++||+++..++.+++...++.+|||+||||||..|+..|.+.+..
T Consensus        24 ~~~~-~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g~i~~g~pr~~~~~~~~~~~~~~  102 (179)
T d1e4va1          24 YGIP-QISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN  102 (179)
T ss_dssp             HCCC-EEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCC
T ss_pred             hCCc-eechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccceeecccccchHHhhhhhhccCC
Confidence            4677 999999987655443          23455999999999999999876788999999999999999998888889


Q ss_pred             cCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhC-----CcEEEEeCCCChHHHHHHHHHH
Q psy11031         82 INGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR-----GMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-----~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                      |++||+|+||++++.+|+.     .|.+++.+++|+..|++++.|+++||.+.     ..++.|||++++++|+++|+++
T Consensus       103 ~~~vi~L~~~~~~l~~R~~-----~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~  177 (179)
T d1e4va1         103 VDYVLEFDVPDELIVDRIV-----KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKI  177 (179)
T ss_dssp             CSEEEEEECCHHHHHHHHH-----TTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHH
T ss_pred             ceEEEEeccchhhhhhhhc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHH
Confidence            9999999999999999983     34457899999999999999999999874     3589999999999999999987


Q ss_pred             H
Q psy11031        157 V  157 (520)
Q Consensus       157 l  157 (520)
                      |
T Consensus       178 l  178 (179)
T d1e4va1         178 L  178 (179)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-20  Score=172.83  Aligned_cols=148  Identities=15%  Similarity=0.296  Sum_probs=126.5

Q ss_pred             cccCcccCcHHHHHHHHHHcc-----------CCCCCCCCHHHHHHHHHHHHhcC----CCCCcEEEeCCCCCHHhHHHH
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEE-----------VKDFSFLSSKTVTEVLMLEMKMS----PAAKAFLISGYPRNMRDVVEY   75 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G-----------~~~g~lVPdelv~~ll~~~l~~~----~~~~G~ILDGFPRt~~QA~~~   75 (520)
                      -++++ |+++|+++|..+...           +++|..|||+++..++.+++...    ...+||++|||||+..|+..|
T Consensus        24 ~~g~~-~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~pr~~~~~~~l  102 (194)
T d1teva_          24 KYGYT-HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGW  102 (194)
T ss_dssp             HHCCE-EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHH
T ss_pred             HhCCc-eEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchhhhcccceeeccchhhHHHHHHH
Confidence            34677 999999998765442           34777999999999999988653    347899999999999999776


Q ss_pred             HHh---cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHH
Q psy11031         76 SDK---IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEV  149 (520)
Q Consensus        76 ~~~---~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV  149 (520)
                      ...   ...++.||+++++.+++.+|+ .|+...+|.+  .+.+++|+..|++++.|+++||++.++++.|||++++++|
T Consensus       103 ~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV  182 (194)
T d1teva_         103 NKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEV  182 (194)
T ss_dssp             HHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHH
T ss_pred             hhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHH
Confidence            553   347889999999999999888 5766667764  7889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy11031        150 YADFRTAVLK  159 (520)
Q Consensus       150 ~~~i~~~l~~  159 (520)
                      |++|+++|+.
T Consensus       183 ~~~I~~il~k  192 (194)
T d1teva_         183 FDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=8.8e-20  Score=170.37  Aligned_cols=151  Identities=17%  Similarity=0.356  Sum_probs=129.0

Q ss_pred             ccccCcccCcHHHHHHHHHHcc-----------CCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHH
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEE-----------VKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYS   76 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G-----------~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~   76 (520)
                      .-++++ |+++|++++..+...           ..+|.++||.++..++..++...  ....|||||||||+.+||..+.
T Consensus        30 ~~~g~~-~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~g~p~~~~q~~~~~  108 (196)
T d1ukza_          30 KDYSFV-HLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFE  108 (196)
T ss_dssp             HHSSCE-EEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHH
T ss_pred             HHhCCe-EEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhccCCCceeeeccchhHHHHHHHH
Confidence            445787 999999887644321           23566999999999999887653  2468999999999999999999


Q ss_pred             HhcCCcCEEEEEEcCHHHHHHHh-hhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031         77 DKIKTINGVILIAWRQSLLERQI-DYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF  153 (520)
Q Consensus        77 ~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i  153 (520)
                      ..+..++.+++|+++++++.+|+ .++...+|.  +.+.+++|++.|++++.|+++||++.++++.|||++++++||++|
T Consensus       109 ~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I  188 (196)
T d1ukza_         109 RDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV  188 (196)
T ss_dssp             HHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHH
T ss_pred             HhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHH
Confidence            99999999999999999999998 455544565  488999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy11031        154 RTAVLKIL  161 (520)
Q Consensus       154 ~~~l~~~~  161 (520)
                      +++|+..|
T Consensus       189 ~~~i~~~L  196 (196)
T d1ukza_         189 QDAIRDSL  196 (196)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99998753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.81  E-value=2e-19  Score=167.39  Aligned_cols=148  Identities=15%  Similarity=0.268  Sum_probs=126.2

Q ss_pred             cccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH---
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD---   77 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~---   77 (520)
                      -++++ |++.|+.+++.+..+.          ..|.++|++.+..++..++.. ...+||||||||++.+|+..|.+   
T Consensus        29 ~~g~~-~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~dg~p~~~~~~~~l~~~~~  106 (194)
T d1qf9a_          29 DFGWV-HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA-NQGKNFLVDGFPRNEENNNSWEENMK  106 (194)
T ss_dssp             HHCCE-EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-STTCCEEEETCCCSHHHHHHHHHHHT
T ss_pred             HHCCc-eEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhh-hhcCCeEEEecchhhhhHHHHHhhhh
Confidence            35677 9999999887666552          356799999999999999875 45689999999999999977654   


Q ss_pred             hcCCcCEEEEEEcCHHHHHHHh-hhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031         78 KIKTINGVILIAWRQSLLERQI-DYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR  154 (520)
Q Consensus        78 ~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~  154 (520)
                      .+..|++||+|+||++++.+|+ .++....|.  +++.+++|+..|++++.|+++||++.+.++.|||++++++||++|.
T Consensus       107 ~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~  186 (194)
T d1qf9a_         107 DFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVE  186 (194)
T ss_dssp             TTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHH
T ss_pred             hcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHH
Confidence            3457999999999999999999 455544554  4889999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy11031        155 TAVLKI  160 (520)
Q Consensus       155 ~~l~~~  160 (520)
                      ++|+.+
T Consensus       187 ~ii~~~  192 (194)
T d1qf9a_         187 NLFKSM  192 (194)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.80  E-value=3.8e-19  Score=164.18  Aligned_cols=142  Identities=17%  Similarity=0.334  Sum_probs=119.8

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc--
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI--   79 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~--   79 (520)
                      ++++ |+++|++++....++          .++|.++||+++..++..++....+.+|||||||||+..||..|.+.+  
T Consensus        24 ~g~~-~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~vl~g~p~~~~~~~~l~~~~~~  102 (182)
T d1s3ga1          24 YGTP-HISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLAD  102 (182)
T ss_dssp             HCCC-EEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HCCc-eeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccceeeeccccchhHHHHHHHHhhc
Confidence            4677 888888776443322          124449999999999999998777889999999999999998776643  


Q ss_pred             --CCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         80 --KTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        80 --~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                        ..+.+++.|+++.+.+.+|+.     .+.+++.+++|++.|++++.|+++||++.++++.|||++++++||++|.++|
T Consensus       103 ~~~~i~~~~~l~~~~e~~~~R~~-----~~~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il  177 (182)
T d1s3ga1         103 MGRKIEHVLNIQVEKEELIARLT-----ADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL  177 (182)
T ss_dssp             TTCCCCEEEEEECCHHHHHHHHH-----TTCSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeeeeccchhhhhhhhhhhhh-----ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence              367889999999999999973     2335789999999999999999999999999999999999999999999988


Q ss_pred             HH
Q psy11031        158 LK  159 (520)
Q Consensus       158 ~~  159 (520)
                      +.
T Consensus       178 ~~  179 (182)
T d1s3ga1         178 QG  179 (182)
T ss_dssp             TC
T ss_pred             Hh
Confidence            63

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1e-18  Score=161.33  Aligned_cols=138  Identities=17%  Similarity=0.363  Sum_probs=115.8

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHH---
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSD---   77 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~---   77 (520)
                      ++++ |+++|+.+++....+          .+.|.++|++++..++..++.... ..+|||+|||||+..||..+..   
T Consensus        26 ~g~~-~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~dg~p~~~~q~~~~~~~l~  104 (180)
T d1akya1          26 FHAA-HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLK  104 (180)
T ss_dssp             HCCE-EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHH
T ss_pred             hCCc-eEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccCCEeccCccchhhhHHHHHhhHH
Confidence            4566 888887776543322          134459999999999999997654 4789999999999999966543   


Q ss_pred             -hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         78 -KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        78 -~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                       .+..|++||+|+|+++++.+|+.+        .+.+.+|++.|++++.||++||++.++++.|||++++++||++|+++
T Consensus       105 ~~~~~~~~vi~L~~~~~~~~~R~~~--------~~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~  176 (180)
T d1akya1         105 EQGTPLEKAIELKVDDELLVARITN--------ADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK  176 (180)
T ss_dssp             HHTCCCCEEEEEECCHHHHHHHHHS--------HHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHH
T ss_pred             HcCCCceeeeecccccchhhhcccc--------cccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence             346899999999999999999853        24678999999999999999999999999999999999999999988


Q ss_pred             HH
Q psy11031        157 VL  158 (520)
Q Consensus       157 l~  158 (520)
                      |.
T Consensus       177 l~  178 (180)
T d1akya1         177 LG  178 (180)
T ss_dssp             HT
T ss_pred             Hc
Confidence            74

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=2.2e-18  Score=158.70  Aligned_cols=142  Identities=17%  Similarity=0.288  Sum_probs=117.9

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---   78 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---   78 (520)
                      +++. |+++|+.++..+.+.          .++|+++|++++.+++.+++...++..|||+||||++..|+..|...   
T Consensus        24 ~g~~-~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~d~~p~~~~~~~~l~~~~~~  102 (181)
T d2cdna1          24 LGIP-QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER  102 (181)
T ss_dssp             HTCC-EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HCCc-eEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccccccEEecccccchhHHHHHHHHHHh
Confidence            4677 888888776543321          12344999999999999999877788999999999999999887654   


Q ss_pred             -cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031         79 -IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA  156 (520)
Q Consensus        79 -~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~  156 (520)
                       ...|++|++|+|+++++.+|+. ++.  ...+.+++++|++.|++++.|+++||++.  ++.|||+++++|||++|+++
T Consensus       103 ~~~~~~~vi~l~~~~e~l~~R~~~r~r--~~~~~~~i~~rl~~y~~~~~~l~~~y~~~--~~~Id~~~s~eeV~~~I~~~  178 (181)
T d2cdna1         103 RGTDIDAVLEFRVSEEVLLERLKGRGR--ADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRA  178 (181)
T ss_dssp             TTCCCCEEEEEECCHHHHHHHHHHHCC--TTCSHHHHHHHHHHHHHHTTTHHHHTTTT--EEEEECCSCHHHHHHHHHHH
T ss_pred             cCCCccEEEeccCCHHHHHhhhccccc--ccchhHHHHHHHHHHHHHHHHHHHHHhcC--eEEEECCCCHHHHHHHHHHH
Confidence             3589999999999999999994 532  12347899999999999999999999876  99999999999999999987


Q ss_pred             HH
Q psy11031        157 VL  158 (520)
Q Consensus       157 l~  158 (520)
                      |.
T Consensus       179 l~  180 (181)
T d2cdna1         179 LG  180 (181)
T ss_dssp             TT
T ss_pred             hC
Confidence            64

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.74  E-value=4.5e-18  Score=157.78  Aligned_cols=145  Identities=15%  Similarity=0.303  Sum_probs=122.8

Q ss_pred             cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHHhc
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSDKI   79 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~~~   79 (520)
                      -++++ |++.|+.++..+..+          ...|.++|+++...++..++.... ..+|||+|||||+..||..|....
T Consensus        26 ~~~~~-~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~q~~~l~~~~  104 (189)
T d1zaka1          26 KYQLA-HISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLE  104 (189)
T ss_dssp             HHCCE-ECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEEEESCCCSHHHHHHHHTTT
T ss_pred             HHCCc-EEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccccCcEEeeccchhhHHHhhhhhcc
Confidence            35688 999999988665433          235569999999999888876533 357999999999999998888777


Q ss_pred             CCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         80 KTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        80 ~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      ..|+++|+|+++++++.+|+.     .|..++.+++|+..|++++.++++||+  +.++.|||++++++||++|.++|..
T Consensus       105 ~~p~~~i~L~~~~e~l~~R~~-----~~~~~e~~~~rl~~y~~~~~~l~~~y~--~~~~~Id~~~~idev~~~I~~~l~~  177 (189)
T d1zaka1         105 IRPDTFILLDVPDELLVERVV-----FDDTEEKVKLRLETYYQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELLGS  177 (189)
T ss_dssp             CCCSEEEEEECCHHHHHHHHT-----TTCCTTHHHHHHHHHHHHHHHHHHTTC--CCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             cccchheeechhhhhhhhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            899999999999999999982     333467889999999999999999996  4599999999999999999999998


Q ss_pred             Hhcc
Q psy11031        160 ILNK  163 (520)
Q Consensus       160 ~~~~  163 (520)
                      ++.+
T Consensus       178 il~~  181 (189)
T d1zaka1         178 ILEK  181 (189)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            8755

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.74  E-value=1.7e-17  Score=151.93  Aligned_cols=144  Identities=21%  Similarity=0.382  Sum_probs=123.0

Q ss_pred             ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc--
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI--   79 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~--   79 (520)
                      ++++ |++.|++++.....+          ..+|+++||+.++.++.+++....+..||++||||++..|+..+....  
T Consensus        24 ~~~~-~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  102 (182)
T d1zina1          24 YGIP-HISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLAD  102 (182)
T ss_dssp             HCCC-EEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             HCCc-eechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcCcccccccchhHHHHHHHHhhhc
Confidence            5787 999888877543322          224559999999999999998767889999999999999997766543  


Q ss_pred             --CCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         80 --KTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        80 --~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                        ..++++++|+++.+.+.+|+.     .+.+++.+++|++.|++++.|+++||++.+.+++|||++++++||++|+++|
T Consensus       103 ~~~~~~~~~~l~~~~e~~~~R~~-----~~~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L  177 (182)
T d1zina1         103 IGRKLDYVIHIDVRQDVLMERLT-----ADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELL  177 (182)
T ss_dssp             TTCCCCEEEEEECCHHHHHHHHH-----TTCSHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             cCCceeeeeccccccchhhhccc-----cccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence              478999999999999999983     3445789999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q psy11031        158 LKIL  161 (520)
Q Consensus       158 ~~~~  161 (520)
                      ..+.
T Consensus       178 ~~l~  181 (182)
T d1zina1         178 GGLA  181 (182)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            8754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-13  Score=129.16  Aligned_cols=168  Identities=12%  Similarity=0.131  Sum_probs=111.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH-------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL-------  294 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~-------  294 (520)
                      +...|+|.|++||||||||++|++++  .|+.++.+        .+...+++.|+.++.++.....+......       
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~--------~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r   73 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL--------RFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANR   73 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE--------ESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--------eCCCCCcccchhhhhhhhcccccchhhhhhHHHHHH
Confidence            46789999999999999999998864  14545433        23445667888888888766554443332       


Q ss_pred             ----HHHHHHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhhcCCCCCEEEecCChhhhhccC-----CC
Q psy11031        295 ----DIVYAEMKKTKYTEADGIVIDGFP------------REMSQLIDFENKYQIHPPMILIDCSKLVLHKGQ-----ID  353 (520)
Q Consensus       295 ----~ll~~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R-----~d  353 (520)
                          ..+...+.     .+..+|+|+|.            .+..+.+.++..+..|+.+|+||||.+.+.++.     ..
T Consensus        74 ~~~~~~i~~~l~-----~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~~  148 (209)
T d1nn5a_          74 WEQVPLIKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERY  148 (209)
T ss_dssp             HTTHHHHHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTT
T ss_pred             HHHHHhHHHHhh-----cccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccccc
Confidence                22233333     45779999984            345566666666777889999999998653211     11


Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q psy11031        354 NSVSAFRRRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDDLE  411 (520)
Q Consensus       354 D~~e~~~~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~  411 (520)
                      ++.+.+++..+.|.       +.+.+ .+.+++|||++++++|+++|...+...+...-
T Consensus       149 E~~~~~~r~~~~Y~-------~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~~~  200 (209)
T d1nn5a_         149 ENGAFQERALRCFH-------QLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATAT  200 (209)
T ss_dssp             CSHHHHHHHHHHHH-------HHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             ccHHHHHHHHHHHH-------HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhcc
Confidence            23333333233332       23332 24689999999999999999999999887653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2e-13  Score=128.13  Aligned_cols=165  Identities=15%  Similarity=0.223  Sum_probs=100.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch------------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR------------  290 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd------------  290 (520)
                      .+.|+|.|++||||||||++|++++  .|+.++..   .+     ...++..|+.+++.+..+....+            
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~~-----ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~   73 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---TR-----EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMF   73 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---EE-----SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---ec-----CCCCccchhhhHHHHhccccccccccchHHHHHHH
Confidence            5789999999999999999999753  14443321   11     23556677777777654432111            


Q ss_pred             -----HHHHHHHHHHHhccccCCCcEEEEeCCCC------------CHHHHHHHHhh---cCCCCCEEEecCChhhhh--
Q psy11031        291 -----DVVLDIVYAEMKKTKYTEADGIVIDGFPR------------EMSQLIDFENK---YQIHPPMILIDCSKLVLH--  348 (520)
Q Consensus       291 -----~lv~~ll~~~l~~~~~~~~~G~ILDGFPr------------t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~--  348 (520)
                           .....++...+.     .+..+|+|+|.-            ...+...+...   ...|+.+|+|+|+++.+.  
T Consensus        74 ~~~~~~~~~~~i~~~l~-----~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~R  148 (210)
T d4tmka_          74 YAARVQLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKR  148 (210)
T ss_dssp             HHHHHHHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----cCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHH
Confidence                 111122223333     456688898742            23333333333   345778999999998642  


Q ss_pred             ---ccCCC----CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        349 ---KGQID----NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       349 ---r~R~d----D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                         |++.+    ...+.+++-.+.|       .+++.....+++|||++++++|++.|...|.+.++.
T Consensus       149 i~~R~~~~~~~~~~~~~~~~v~~~y-------~~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~~  209 (210)
T d4tmka_         149 ARARGELDRIEQESFDFFNRTRARY-------LELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  209 (210)
T ss_dssp             HHHHSSCCTTTTSCHHHHHHHHHHH-------HHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccccchhhhccHHHHHHHHHHH-------HHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence               23322    1233333222333       234444456899999999999999999999888764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3e-13  Score=121.35  Aligned_cols=159  Identities=17%  Similarity=0.110  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVLDIVYA  299 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~~ll~~  299 (520)
                      ..+.+|+|+|+|||||||+|+.|++++ |+.+++.+++..   ....          .....+.....+   .....+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l-~~~~~~~d~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~   69 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDFLHP---RRNI----------EKMASGEPLNDDDRKPWLQALND   69 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGGGCC---HHHH----------HHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCeechhhhhH---HHHh----------hhhccCcceehhhhHHHHHHHHH
Confidence            457889999999999999999999997 999999988765   2110          011111111111   11111111


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCC--CCCHHHHHHHHHHHHHHhHHHH
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQI--DNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~--dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      .+.. ......+++++ ++........+-..+..+..+|+|+||.+.+.   +.|.  ....+.++.+++.|..      
T Consensus        70 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~e~------  141 (171)
T d1knqa_          70 AAFA-MQRTNKVSLIV-CSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQE------  141 (171)
T ss_dssp             HHHH-HHHHCSEEEEE-CCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCC------
T ss_pred             HHHH-HHhccCceEee-ccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCccHHHHHhhHHHhhC------
Confidence            1220 11123344444 33333333333344455567899999987642   1232  3356666555443321      


Q ss_pred             HHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                       .+......++||+++++++|.++|.+.|+
T Consensus       142 -~~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         142 -PGADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             -CCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -CCcccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence             12223357889999999999999988875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.3e-14  Score=136.03  Aligned_cols=38  Identities=21%  Similarity=0.551  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .+|+|+|.|||||||||||++|+++| |+.|||+|+|||
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~-gl~~iStGdLlR   39 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEAL-QWHLLDSGAIYR   39 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-CCcEECHHHHHH
Confidence            36799999999999999999999998 999999999999

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.44  E-value=5.5e-13  Score=121.02  Aligned_cols=154  Identities=8%  Similarity=0.093  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      +.|+|+|+|||||||+|+.||+++ |+++++.+++++   +..      |..+.+++. .|.    +...++....+.  
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L-g~~~id~D~~ie---~~~------g~~i~ei~~~~g~----~~~~~~~~~~l~--   66 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIFMQ---HTS------GMTVADVVAAEGW----PGFRRRESEALQ--   66 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHH------CSCHHHHHHHHHH----HHHHHHHHHHHH--
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh-CCCEEehhhhhh---hhh------hhhhhhhhcccch----HHHHHHHHHHHH--
Confidence            347889999999999999999998 999999999987   321      222333332 233    334444444454  


Q ss_pred             ccCCCcEEEEe--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031        305 KYTEADGIVID--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPM  373 (520)
Q Consensus       305 ~~~~~~G~ILD--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l  373 (520)
                      ......+++..  |.+......+.|.+.    ..+|||+|+.+.+.     +    .|...........++.+.+...++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~l  142 (170)
T d1e6ca_          67 AVATPNRVVATGGGMVLLEQNRQFMRAH----GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL  142 (170)
T ss_dssp             HHCCSSEEEECCTTGGGSHHHHHHHHHH----SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccceecccccchhhhHHHHhhhcc----ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence            33344455554  466666666666654    35899999997532     1    233444555555666655555555


Q ss_pred             HHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        374 LRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                         |.+... ++||++++++++.++|...|
T Consensus       143 ---Y~~~a~-~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_         143 ---YQDVAH-YVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             ---HHHHCS-EEEETTSCHHHHHHHHHHHT
T ss_pred             ---HHHcCC-EEEcCCCCHHHHHHHHHHHc
Confidence               433222 56899999999988887654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.43  E-value=9.6e-15  Score=137.60  Aligned_cols=37  Identities=22%  Similarity=0.451  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ..+|.|.|||||||||||++||++| |+.|||+|+|+|
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~l-g~~~istGdl~R   39 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDF-GFTYLDTGAMYR   39 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-CCcEECHHHHHH
Confidence            4678899999999999999999998 999999999999

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.37  E-value=1.1e-12  Score=117.81  Aligned_cols=161  Identities=14%  Similarity=0.180  Sum_probs=94.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK  302 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~  302 (520)
                      +++.+|+|+|+|||||||+|+.|+++|.++.+++.+++.+   ........       ....+...........+.+.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~   72 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK---ENHFYTEY-------DTELDTHIIEEKDEDRLLDFME   72 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHH---HTTCSCC-------------CCCCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHH---HHhhhhhH-------HHhhcccchHHHHHHHHHHHHH
Confidence            5678899999999999999999999984467777777776   33221111       1112233344434434444443


Q ss_pred             ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHH--HHHHHHHHhHHHHHHh
Q psy11031        303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRR--RLELFRERTLPMLRAM  377 (520)
Q Consensus       303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~--Rl~~f~~~~~~l~~~y  377 (520)
                      . ......++++|++++..-+     .  ...+.+|+|+|+.+.+. |  .|... ......  ..+.+.....+..+.|
T Consensus        73 ~-~i~~~~~~~~~~~~~~~~~-----~--~~~~~vI~L~~~~e~l~~Rl~~R~~~-~~~~~~~~~~e~~~~~~~~~~~~~  143 (174)
T d1y63a_          73 P-IMVSRGNHVVDYHSSELFP-----E--RWFHMVVVLHTSTEVLFERLTKRQYS-EAKRAENMEAEIQCICEEEARDAY  143 (174)
T ss_dssp             H-HHTSSSEEEEECSCCTTSC-----G--GGCSEEEEEECCHHHHHHHHHHTTCC-HHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred             h-hhhhcccccccHHHHHHHH-----H--hcCceEEEEECCHHHHHHHHHhCCCc-ccccccchhhhhhhhhHHHHHHhh
Confidence            1 3446789999999886311     1  12456899999997643 2  33332 222221  2233444444555667


Q ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        378 DVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       378 ~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .. . ++..+.+.+++++.+.|...+.
T Consensus       144 ~~-~-~~i~~~~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         144 ED-D-IVLVRENDTLEQMAATVEEIRE  168 (174)
T ss_dssp             CG-G-GEEEEECSSHHHHHHHHHHHHH
T ss_pred             cC-C-EEEECCCCCHHHHHHHHHHHHH
Confidence            53 2 3334457888888888765443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1e-11  Score=117.24  Aligned_cols=174  Identities=13%  Similarity=0.217  Sum_probs=103.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc-cchHHHHHHH--HH-
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF-VNRDVVLDIV--YA-  299 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~-vPd~lv~~ll--~~-  299 (520)
                      +++.|+|.|+.|||||||+++|++++ .-...    +++    +...+++.|..++.++..... +.+.. ..++  .. 
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L-~~~~~----~~~----~p~~~~~~g~~ir~~l~~~~~~~~~~~-~~llf~a~r   71 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL-QPNCK----LLK----FPERSTRIGGLINEYLTDDSFQLSDQA-IHLLFSANR   71 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT-TTSEE----EEE----SSCTTSHHHHHHHHHHHCTTCCCCHHH-HHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH-HhCCE----EEE----ECCCCchHhHhHHHhhhhccccccchH-HHHHHHHHH
Confidence            57889999999999999999999986 43221    222    344567889999998865433 22222 1111  11 


Q ss_pred             -----HHhccccCCCcEEEEeCCC--------------CCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCC---
Q psy11031        300 -----EMKKTKYTEADGIVIDGFP--------------REMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDN---  354 (520)
Q Consensus       300 -----~l~~~~~~~~~G~ILDGFP--------------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD---  354 (520)
                           .+.. ....+..+|+|+|.              ..+.+...+...+..|+.+|+||+++.... |  +|.++   
T Consensus        72 ~~~~~~i~~-~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~~e  150 (214)
T d1tmka_          72 WEIVDKIKK-DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYE  150 (214)
T ss_dssp             HTTHHHHHH-HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSSTTC
T ss_pred             HHHHHHHHH-HHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhhhh
Confidence                 1220 12246788999984              234555555555667888999999886432 2  22222   


Q ss_pred             CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHHHHH
Q psy11031        355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      +.+.+++-.+.|.+........+  ...+++||++ .++++|++.|...|...+...
T Consensus       151 ~~~~~~~v~~~Y~~l~~~~~~~~--~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~  205 (214)
T d1tmka_         151 TVKFQEKVKQTFMKLLDKEIRKG--DESITIVDVTNKGIQEVEALIWQIVEPVLSTH  205 (214)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--CTTEEEEECTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhC--CCcEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence            33333333344544332221211  3468899975 799999999888887766443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.35  E-value=9.1e-13  Score=118.86  Aligned_cols=170  Identities=12%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      ++|+|.|+|||||||+|++|++++    .....++.++..+   ........  ......+..................+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF---EVAKEENL--VSDRDQMRKMDPETQKRIQKMAGRKI   76 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH---HHHHHTTS--CSSGGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhH---HHHHHHHh--hhhhhhhhhhhchhhHHHHHHHHHHH
Confidence            589999999999999999998764    2445677788877   32211100  00001111111111222233333444


Q ss_pred             hccccCCCcEEEEeCCCCCHHHH------HHHHhhcCCCCCEEEecCChhhhh--------ccCCCCCHHHHHHHHHHHH
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQL------IDFENKYQIHPPMILIDCSKLVLH--------KGQIDNSVSAFRRRLELFR  367 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qa------e~l~~~~~~p~~VI~Ld~~~~~~~--------r~R~dD~~e~~~~Rl~~f~  367 (520)
                      .  .......+++|||+++..+.      ..+......++.+|+|+|+++...        +.|..+..+.++ +...++
T Consensus        77 ~--~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~-~~~~~~  153 (190)
T d1khta_          77 A--EMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIE-QHQFMN  153 (190)
T ss_dssp             H--HHHTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHH-HHHHHH
T ss_pred             H--HHhCCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHH-HHHHHH
Confidence            4  33456789999998653211      111112234677999999987531        233444555544 455555


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ......+..|.....++.++++.++++++++|.+.|
T Consensus       154 ~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         154 RCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            555555566654444556678999999999998876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.30  E-value=2.4e-12  Score=116.56  Aligned_cols=170  Identities=14%  Similarity=0.064  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcc-h-HHHHhhh-hcCCccchHHHHHHHH
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGL-N-SRIKSSV-SAGDFVNRDVVLDIVY  298 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~-g-~~i~~~l-~~G~~vPd~lv~~ll~  298 (520)
                      ++|+|.|+|||||||++++|++++    ..+.+++.|+..+   ......... + ....... ......... ....+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   77 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML---ATALKLGYAKDRDEMRKLSVEKQKKLQID-AAKGIA   77 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH---HHHHTTTSCSSHHHHTTSCHHHHHHHHHH-HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcch---HHHHHHHhhhhhhhccccchhhcccCHHH-HHHHHH
Confidence            578899999999999999999865    1345677788776   322111111 0 0111000 000111111 122222


Q ss_pred             HHHhccccCCCcEEEEeCCCCCHHHH-------HHHHhhcCCCCCEEEecCChhhhh--------ccCCCCCHHHHHHHH
Q psy11031        299 AEMKKTKYTEADGIVIDGFPREMSQL-------IDFENKYQIHPPMILIDCSKLVLH--------KGQIDNSVSAFRRRL  363 (520)
Q Consensus       299 ~~l~~~~~~~~~G~ILDGFPrt~~Qa-------e~l~~~~~~p~~VI~Ld~~~~~~~--------r~R~dD~~e~~~~Rl  363 (520)
                      ..+.   .....++++|+++....+.       ..+... ..++.+|+|+++.+.+.        +.|.+...+.+.++.
T Consensus        78 ~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~  153 (194)
T d1nksa_          78 EEAR---AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-INPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILET  153 (194)
T ss_dssp             HHHH---HTCSSEEEEEECSEEEETTEEEESSCHHHHHH-HCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHH
T ss_pred             HHHH---HhCCCcEEEEccCchHHHHHHHHhHHHHHHhh-hccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence            2222   3446788888876532210       111111 23677999999987532        245566788888888


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ..+.+.....+..+.....++.++++.+++++.++|...|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         154 INFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            8888877766666655555556668899999999998776

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.24  E-value=2.6e-11  Score=106.51  Aligned_cols=136  Identities=15%  Similarity=0.219  Sum_probs=85.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      .++|+|.|+|||||||+|+.|++++.++.+++.+++.+   .........+..   ...........+...++...+.  
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--   73 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ---SIMAHEERDEYK---YTKKKEGIVTGMQFDTAKSILY--   73 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH---HHTTSCCGGGCC---CCHHHHHHHHHHHHHHHHHHHT--
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHH---HHhcccchhhhh---hhhhhhHHHHHHHHHHHHHHHH--
Confidence            35789999999999999999987766999999999877   332211110000   0000001112445566666666  


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhh---cCCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHHHHH
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENK---YQIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLELFRE  368 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~f~~  368 (520)
                      .......+|+|+..........+...   .+.+..+|+|++|.+.+.     |++.+...+.+++.++.|++
T Consensus        74 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~  145 (152)
T d1ly1a_          74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMRE  145 (152)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHH
T ss_pred             hhccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Confidence            44556789999987777766655543   334456899999987642     23334467777776665553

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.23  E-value=6.3e-11  Score=105.48  Aligned_cols=153  Identities=14%  Similarity=0.203  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      ++|+|+|+|||||||+|++|+++| |+.+++++++++   ........      .....+.....+.+.+.+.....   
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l-~~~~i~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---   71 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLAR---EEQLYDGY------DEEYDCPILDEDRVVDELDNQMR---   71 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HTTCBCCC------CSSSSCCCBCHHHHHHHHHHHHH---
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-CCcEEechHHHH---Hhccccch------hHHhhhhhHHHHHHHHHhhhhhh---
Confidence            568899999999999999999998 999999999998   32211110      00112223344444454444333   


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHH--HHHHHHHHHHhHHHHHHhhhC
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAF--RRRLELFRERTLPMLRAMDVE  380 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~--~~Rl~~f~~~~~~l~~~y~~~  380 (520)
                         ..+++++++.+..-     ..  .....+|+|+|+.+.+.+   .|... .+..  ..+.+.+.........+|...
T Consensus        72 ---~~~~~~~~~~~~~~-----~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~  140 (173)
T d1rkba_          72 ---EGGVIVDYHGCDFF-----PE--RWFHIVFVLRTDTNVLYERLETRGYN-EKKLTDNIQCEIFQVLYEEATASYKEE  140 (173)
T ss_dssp             ---HCCEEEECSCCTTS-----CG--GGCSEEEEEECCHHHHHHHHHHTTCC-HHHHHHHHHHHHTTHHHHHHHHHSCGG
T ss_pred             ---cCCcccchhHHHHH-----HH--hcCCCcceecCCHHHHHHHHHhcCCC-cccccccchhhhHHHHHHHHHHHhhhc
Confidence               34677787766421     11  124568999999876421   23222 2221  223344444555666777543


Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        381 TRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       381 ~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                       ..+.+|++ +++++.+.|.+.+.
T Consensus       141 -~~i~~~~~-~~~~~~~~i~~Ii~  162 (173)
T d1rkba_         141 -IVHQLPSN-KPEELENNVDQILK  162 (173)
T ss_dssp             -GEEEEECS-SHHHHHHHHHHHHH
T ss_pred             -cEEEECCC-CHHHHHHHHHHHHH
Confidence             45667765 56667666665554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.22  E-value=2.5e-11  Score=107.79  Aligned_cols=160  Identities=11%  Similarity=0.052  Sum_probs=89.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK  305 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~  305 (520)
                      +.|+|.|+|||||||+|+.|++++ +..+++.++.++   .....+.........    +.......+...+...+.   
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---   71 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDIIN---HMVVGGYRPPWESDE----LLALTWKNITDLTVNFLL---   71 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHHHH---TTCCTTCCCGGGCHH----HHHHHHHHHHHHHHHHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-CCCEEEehHHHH---HHHhccccchhHHHH----HHHHHHHHHHHHHHHHHh---
Confidence            679999999999999999999998 888887788888   443322211111110    111112333344444333   


Q ss_pred             cCCCcEEEEeCCCCCHHHHHHHHhh---cCC-CCCEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHHHHHHhh
Q psy11031        306 YTEADGIVIDGFPREMSQLIDFENK---YQI-HPPMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLPMLRAMD  378 (520)
Q Consensus       306 ~~~~~G~ILDGFPrt~~Qae~l~~~---~~~-p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~  378 (520)
                        ...++|+|++.....+...+...   ... +..+++|+|+.+.+.+   .|..+. ....+.++.|.    .+.++..
T Consensus        72 --~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-~~~~~~~~~~~----~~~~~~~  144 (176)
T d2bdta1          72 --AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE-QMGERCLELVE----EFESKGI  144 (176)
T ss_dssp             --TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----CGGGGHHHH----HHHHTTC
T ss_pred             --cCCCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCch-hhhHHHHHHHH----HHHhCCC
Confidence              57899999988776655544322   222 2347899999976432   232221 11111122222    2222222


Q ss_pred             hCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        379 VETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       379 ~~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      . . .+.||.+ .+++++.+.|...+.+
T Consensus       145 ~-~-~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         145 D-E-RYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             C-T-TSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             C-C-eEEEECCCCCHHHHHHHHHHHHhc
Confidence            2 2 2346665 5788888887777654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.12  E-value=1e-10  Score=105.08  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .|+|+|+|||||||+++.||+++ |+.+++++++++
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l-~~~~~d~d~~ie   36 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDFLIE   36 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh-CCCEEecCchhh
Confidence            48999999999999999999998 999999999988

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=1.1e-10  Score=104.99  Aligned_cols=151  Identities=15%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      |+|+++|+|||||||+|+.||+++ |+.++++++++.   +..  +..    +.+++. .|...-.+...+.+..-+.  
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l-~~~fiD~D~~ie---~~~--g~~----i~~~~~~~g~~~~r~~e~~~~~~~~~--   69 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVAIE---QRT--GRS----IADIFATDGEQEFRRIEEDVVRAALA--   69 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHH--
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh-CCCeEeeccchh---hhh--hhh----hhhhhhhhhHHHHHHHHhhhhhhccc--
Confidence            457788999999999999999997 999999999887   321  222    223222 2322112233333433333  


Q ss_pred             ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-----cCC---CCC-HHHHHHHHHHHHHHhHHHH
Q psy11031        305 KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-----GQI---DNS-VSAFRRRLELFRERTLPML  374 (520)
Q Consensus       305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-----~R~---dD~-~e~~~~Rl~~f~~~~~~l~  374 (520)
                         ..+++|+.|-..-.....  ...+ ....+|||+|+.+.+. |     .|+   ..+ .+.++.-    .+..   .
T Consensus        70 ---~~~~vi~~gg~~~~~~~~--~~~l-~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l----~~eR---~  136 (165)
T d2iyva1          70 ---DHDGVLSLGGGAVTSPGV--RAAL-AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRAL----MAKR---A  136 (165)
T ss_dssp             ---HCCSEEECCTTGGGSHHH--HHHH-TTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHH----HHHH---H
T ss_pred             ---cccccccccccccccccc--cccc-cccceeeeeccchhhhhcccccccchhccCccHHHHHHHH----HHHH---H
Confidence               244566665432222211  1111 2356899999987532 1     121   111 2333322    1122   2


Q ss_pred             HHhhhCCCEEEEECC-CCHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGD-TQLPQVREEFERV  402 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~-~~~e~V~~~I~~~  402 (520)
                      .+|++... ++||.+ .+++++.++|...
T Consensus       137 ~~Y~~~ad-~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1         137 PLYRRVAT-MRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             HHHHHHCS-EEEECSSSCHHHHHHHHHTT
T ss_pred             HHHHhhCC-EEEECCCCCHHHHHHHHHhc
Confidence            34544222 568976 5999999888653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=1.1e-09  Score=101.30  Aligned_cols=159  Identities=12%  Similarity=0.167  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc---h-HHHHHHHH--
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN---R-DVVLDIVY--  298 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP---d-~lv~~ll~--  298 (520)
                      +|+|.|..||||||||+.|++++  .|+..+.+        .+...+++.+..+...+..+....   . ....-+..  
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~--------~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~   73 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL--------AFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALD   73 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--------ESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--------ecCCCCCccchhhhhhhccccccccccchHHHHHHHHHH
Confidence            69999999999999999999854  14443322        233344555555555443332111   1 11111110  


Q ss_pred             -----HHHhccccCCCcEEEEeCCCCCH-----------------HHHHHHHhh---cCCCCCEEEecCChhhhh-----
Q psy11031        299 -----AEMKKTKYTEADGIVIDGFPREM-----------------SQLIDFENK---YQIHPPMILIDCSKLVLH-----  348 (520)
Q Consensus       299 -----~~l~~~~~~~~~G~ILDGFPrt~-----------------~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-----  348 (520)
                           ..+. .....+..+|+|+|+.+.                 .+...++..   ...|+.+|+|+++.++..     
T Consensus        74 ~~~~~~~~~-~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~  152 (208)
T d1gsia_          74 RAGAVHTIQ-GLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRG  152 (208)
T ss_dssp             HHTTHHHHH-HHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHhHH-HHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHh
Confidence                 1111 012235678999986432                 122233322   345677999999997532     


Q ss_pred             ccCC-----CCC---HHHHHHHHH-HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031        349 KGQI-----DNS---VSAFRRRLE-LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF  399 (520)
Q Consensus       349 r~R~-----dD~---~e~~~~Rl~-~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I  399 (520)
                      |+|.     .|.   ...+.+|+. .|.+.    .+.+. ...+++|||++++++|.++|
T Consensus       153 R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~----~~~~~-~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         153 RAQRDPGRARDNYERDAELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HHHHCTTCCCCTTTTCHHHHHHHHHHHHHH----HHHTT-TSEEEEECTTCCHHHHHHHH
T ss_pred             hhcccccccccchhhHHHHHHHHHHHHHHH----HHhcC-CCCEEEEeCCCCHHHHHHhh
Confidence            2221     111   112222322 22221    11111 13488999999999999876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.87  E-value=2.3e-08  Score=92.84  Aligned_cols=169  Identities=15%  Similarity=0.185  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---------------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---------------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---------------  290 (520)
                      .+|.|.|++||||||+|+.|. ++ |+.+++++++.+   +....+++....+.+.+......++               
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~-G~~vidaD~i~~---~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~   77 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DL-GVPLVDADVVAR---EVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH   77 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TT-TCCEEEHHHHHH---HTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HC-CCeEEEchHHHH---HHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhh
Confidence            578899999999999999886 56 999999999999   6665555555555544433222222               


Q ss_pred             --------HHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031        291 --------DVVLDIVYAEMKKT-KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQIDNSVS  357 (520)
Q Consensus       291 --------~lv~~ll~~~l~~~-~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~dD~~e  357 (520)
                              .++...+..++... ......-+|+++ |.-      ++..+ ...+.+|+++|+.+.+. |  .|...+.+
T Consensus        78 ~~~~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll------~e~~~~~~~d~ii~v~~~~~~r~~R~~~R~~~s~e  150 (205)
T d1jjva_          78 DEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLL------IENKLTALCDRILVVDVSPQTQLARSAQRDNNNFE  150 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTT------TTTTCGGGCSEEEEEECCHHHHHHHHC-----CHH
T ss_pred             hhhhhHhhcccCHHHHHHHHHHHhhccCCeEEEEe-ccc------cccchhhhhhheeeecchHHHHHHHHHhcCCchHH
Confidence                    11122222222210 112234566675 432      22111 22467999999998643 2  35456788


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11031        358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLEN  412 (520)
Q Consensus       358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~  412 (520)
                      .+.+|+.....  ......+.  +  ++|+.+.+.++..+++...|....++.++
T Consensus       151 ~~~~~~~~Q~~--~~~k~~~a--D--~vI~N~~~l~~~~~~l~~~i~~i~~~~~~  199 (205)
T d1jjva_         151 QIQRIMNSQVS--QQERLKWA--D--DVINNDAELAQNLPHLQQKVLELHQFYLQ  199 (205)
T ss_dssp             HHHHHHHHSCC--HHHHHHHC--S--EEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC--HHHHHHhC--C--EEEECCCChHHHHHHHHHHHHHHHHHHHH
Confidence            88888763211  11111222  2  35899999988888888888777665544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.84  E-value=2.1e-09  Score=95.75  Aligned_cols=157  Identities=12%  Similarity=0.078  Sum_probs=83.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh-hhHHhhhhcccccCC-cchH-HHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL-GKLLRYFANIEDDGE-GLNS-RIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~-gdLlr~~~~~~~~~t-~~g~-~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      +.+|+|.|+|||||||+|+.|++++ |+.++++ ++.++   .....+. .... .....   .. .--.....++..  
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l-g~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~--   73 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLW---GYIKHGRIDPWLPQSHQQ---NR-MIMQIAADVAGR--   73 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHH---HTCCSSCCCTTSSSHHHH---HH-HHHHHHHHHHHH--
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEecHHHHH---HHHhcCCcccccchhhhH---HH-HHHHHHHHHHHH--
Confidence            5789999999999999999999997 9887765 46666   3322111 0000 00000   00 000111122222  


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCC---CCHHHHHHHHHHHHHHhHHHHH
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQID---NSVSAFRRRLELFRERTLPMLR  375 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~d---D~~e~~~~Rl~~f~~~~~~l~~  375 (520)
                         .......+|+|+..+... ...+... .....+++|+|+.+.+.+   .|..   ...+.+....+.|.    ....
T Consensus        74 ---~~~~~~~vi~~~~~~~~~-~~~~~~~-~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~----~~~~  144 (176)
T d1zp6a1          74 ---YAKEGYFVILDGVVRPDW-LPAFTAL-ARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFA----DLGA  144 (176)
T ss_dssp             ---HHHTSCEEEECSCCCTTT-THHHHTT-CSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTT----CCGG
T ss_pred             ---HHhcCCCeEecccccHHH-HHHHHhc-ccccccccCCCCHHHHHHHHHhCCCccccchhhHHHHHHHHh----hccc
Confidence               223567899999775432 2223322 234457899999875421   2322   22333332222221    1111


Q ss_pred             HhhhCCCEEEEE-CCCCHHHHHHHHHHHHHH
Q psy11031        376 AMDVETRLTIVD-GDTQLPQVREEFERVLKK  405 (520)
Q Consensus       376 ~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~~  405 (520)
                      ++   .  +.|| ++.+++++.+.|.+.|..
T Consensus       145 ~~---~--~~idt~~~~~ee~~~~I~~~l~~  170 (176)
T d1zp6a1         145 FE---H--HVLPVSGKDTDQALQSAINALQS  170 (176)
T ss_dssp             GG---G--GEEECTTCCTTTTTTTTHHHHHH
T ss_pred             cc---C--EEEECCCCCHHHHHHHHHHHHHc
Confidence            11   1  2355 556889888888887765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.78  E-value=1.2e-08  Score=90.46  Aligned_cols=162  Identities=10%  Similarity=0.003  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh-hHHhhhhcccccCCcchHHHHhhhhcCCccc-hH---HHHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG-KLLRYFANIEDDGEGLNSRIKSSVSAGDFVN-RD---VVLDIVYA  299 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g-dLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP-d~---lv~~ll~~  299 (520)
                      .++|+|.|+|||||||+|+.|++++ +...++++ +.+.   .... ...........+..+...- ..   .+...+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l-~~~~~~~~~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL-PEPWLAFGVDSLI---EAMP-LKMQSAEGGIEFDADGGVSIGPEFRALEGAWAE   77 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS-SSCEEEEEHHHHH---HHSC-GGGGTSTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc-CCCeEEeecchhh---cccc-ccccchhHHhhhhcccchhHHHHHHHHHHHHHH
Confidence            5689999999999999999999997 76554433 3333   1110 0001111111122221111 11   12222222


Q ss_pred             HHhccccCCCcEEEEeC-CCCCHHHHHHHHhhcCCC-CCEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031        300 EMKKTKYTEADGIVIDG-FPREMSQLIDFENKYQIH-PPMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLPML  374 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDG-FPrt~~Qae~l~~~~~~p-~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~l~  374 (520)
                      .+.. .......+|+++ +-........+....... ..+|+|+|+.+.+.+   .|.+..++......+.       + 
T Consensus        78 ~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~-------~-  148 (178)
T d1qhxa_          78 GVVA-MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYV-------V-  148 (178)
T ss_dssp             HHHH-HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTTG-------G-
T ss_pred             HHHH-HHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcchhhhhhhhhh-------h-
Confidence            2220 122345666665 444444344444443333 347899999986432   2333333222211111       1 


Q ss_pred             HHhhhCCCEEEEECC-CCHHHHHHHHHHH
Q psy11031        375 RAMDVETRLTIVDGD-TQLPQVREEFERV  402 (520)
Q Consensus       375 ~~y~~~~~l~~IDa~-~~~e~V~~~I~~~  402 (520)
                      ..+  ...=++||.+ .+++++.+.|.+.
T Consensus       149 ~~~--~~~dl~IDts~~s~ee~a~~I~~~  175 (178)
T d1qhxa_         149 HEG--VEYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             GTT--CCCSEEEETTSSCHHHHHHHHHTT
T ss_pred             hcC--CCCCEEEECCCCCHHHHHHHHHHh
Confidence            111  1112578987 5899999888754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=2e-08  Score=91.13  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM  301 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l  301 (520)
                      .+.|..|+++|+|||||||+|+.+++.+ ++.+|+.+++..   .                        .-+.+.++..|
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~-~~~~i~~D~~~~---~------------------------~~~~~~~~~~l   62 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVNRDTLGS---W------------------------QRCVSSCQAAL   62 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGG-TCEEEEHHHHCS---H------------------------HHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc-CCEEEchHHHHH---H------------------------HHHHHHHHHHH
Confidence            4568899999999999999999999997 999999976644   1                        11234555556


Q ss_pred             hccccCCCcEEEEeCCCCCHHHHHHHHhh---cCCCCCEEEecCChhhh
Q psy11031        302 KKTKYTEADGIVIDGFPREMSQLIDFENK---YQIHPPMILIDCSKLVL  347 (520)
Q Consensus       302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~  347 (520)
                      .     .+..+|+|+...+..+...+.+.   .+..-.+++|++|.+.+
T Consensus        63 ~-----~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~  106 (172)
T d1yj5a2          63 R-----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA  106 (172)
T ss_dssp             H-----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH
T ss_pred             H-----CCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHH
Confidence            6     46789999988887776655433   33344588999988764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=6.9e-09  Score=90.37  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      .|+|+|+|||||||+|+.||+++ |+++++.+++..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L-~~~~id~~~~~~   38 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIE   38 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT-TCEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-CCCeEeechhHH
Confidence            58999999999999999999998 999999988876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3e-08  Score=92.95  Aligned_cols=76  Identities=12%  Similarity=0.082  Sum_probs=44.1

Q ss_pred             CCCCCEEEecCChhhhh-----ccCCC---CCHHHHHHHHHHHHHHhH-HH----HHHhhhCCCEEEEECCCCHHHHHHH
Q psy11031        332 QIHPPMILIDCSKLVLH-----KGQID---NSVSAFRRRLELFRERTL-PM----LRAMDVETRLTIVDGDTQLPQVREE  398 (520)
Q Consensus       332 ~~p~~VI~Ld~~~~~~~-----r~R~d---D~~e~~~~Rl~~f~~~~~-~l----~~~y~~~~~l~~IDa~~~~e~V~~~  398 (520)
                      ..|+.+|+|+++++...     |+|..   .+.+. ..++...++... ..    ...+.....+++|||++++++|+++
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~y-l~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~  229 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEY-LEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYES  229 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHH-HHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhhcchhhhcCCHHH-HHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHH
Confidence            35788999999998632     23321   12222 223332222210 00    0011122468899999999999999


Q ss_pred             HHHHHHHHHH
Q psy11031        399 FERVLKKIID  408 (520)
Q Consensus       399 I~~~I~~~i~  408 (520)
                      |.+.|...+.
T Consensus       230 i~~~i~~~l~  239 (241)
T d1p5zb_         230 LVEKVKEFLS  239 (241)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988877654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.69  E-value=5.4e-08  Score=88.67  Aligned_cols=163  Identities=17%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHH-HhhhhcCCccchH-----------
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRI-KSSVSAGDFVNRD-----------  291 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i-~~~l~~G~~vPd~-----------  291 (520)
                      .|.+|-|.|++||||||+|+.|. ++ |+.+++.+++.+   .....+.+....+ ...+..+..-...           
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~-g~~~~~~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~   76 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SW-GYPVLDLDALAA---RARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPER   76 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HT-TCCEEEHHHHHH---HHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HC-CCeEEEccHHHH---HhhhcccccccccccceeccCchhhhhHHHhhhcCchh
Confidence            47889999999999999999985 56 999999988877   3221111111111 1111111111111           


Q ss_pred             ------HHHHHHHHHHhcc-ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCCCCHHHHH
Q psy11031        292 ------VVLDIVYAEMKKT-KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQIDNSVSAFR  360 (520)
Q Consensus       292 ------lv~~ll~~~l~~~-~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~  360 (520)
                            .+.......+... .......+|+++.+--       +..+ ...+.+|+++||.+.+- |  .|...+.+.+.
T Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~-------~~~~~~~~d~vI~v~a~~e~r~~Rl~~R~~~~~~~~~  149 (191)
T d1uf9a_          77 LKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLF-------EKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVL  149 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTT-------TTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhhhhcccceEEEEeeccc-------cccccccceeEEEEecchhhHHHHHHhcccchHHHHH
Confidence                  1111111111100 1123466788875321       1111 12456999999998643 2  34444566666


Q ss_pred             HHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        361 RRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       361 ~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      .+.+.   + .+........+ + +|+.+.+.+++..+|...+.
T Consensus       150 ~~~~~---q-~~~~~~~~~aD-~-vI~N~~s~~~l~~~v~~il~  187 (191)
T d1uf9a_         150 ARERA---Q-MPEEEKRKRAT-W-VLENTGSLEDLERALKAVLA  187 (191)
T ss_dssp             HHHTT---S-CCHHHHHHHCS-E-EECCSSHHHHHHHHHHHHHH
T ss_pred             HHHHh---C-CCHHHHHHhCC-E-EEECCCCHHHHHHHHHHHHH
Confidence            65542   1 12222112222 3 58889999998888877664

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.1e-07  Score=88.39  Aligned_cols=167  Identities=16%  Similarity=0.193  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-----cCCccch----------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-----AGDFVNR----------  290 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-----~G~~vPd----------  290 (520)
                      .+|.|.|++||||||.|+.|. ++ |+.+++++++.+   +....+.+....+.+.+.     .+..+.-          
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~-G~~vidaD~i~~---~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~   78 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DL-GINVIDADIIAR---QVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFAN   78 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HT-TCEEEEHHHHHH---HTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTC
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HC-CCcEEEchHHHH---HHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhh
Confidence            478899999999999999886 55 999999999999   555554444443333221     1111111          


Q ss_pred             --------HHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhhc---cCCCCCHH
Q psy11031        291 --------DVVLDIVYAEMKKT-KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLHK---GQIDNSVS  357 (520)
Q Consensus       291 --------~lv~~ll~~~l~~~-~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~r---~R~dD~~e  357 (520)
                              .++..++.+.+... .......+++++ |.-      ++..+ ...+.+|+++|+++.+..   .|...+.+
T Consensus        79 ~~~~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll------~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~~~~~~  151 (208)
T d1vhta_          79 PEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLL------VENSLYKKANRVLVVDVSPETQLKRTMQRDDVTRE  151 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTT------TTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eec------ccccccccCCEEEEEeCCHHHHHHHHHHhhhhhHH
Confidence                    11222222222210 111234566665 221      22222 234569999999986432   24344666


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031        358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL  410 (520)
Q Consensus       358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~  410 (520)
                      .+..|+...   . +........+  ++||.+.+.+++.++|...+...++-.
T Consensus       152 ~~~~~~~~Q---~-~~~~k~~~aD--~vI~N~~~le~l~~~v~~l~~~~l~~~  198 (208)
T d1vhta_         152 HVEQILAAQ---A-TREARLAVAD--DVIDNNGAPDAIASDVARLHAHYLQLA  198 (208)
T ss_dssp             HHHHHHHHS---C-CHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---C-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence            677666532   1 1222222222  468999999999999988766655433

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.8e-08  Score=90.50  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      |++|+|.|+.||||||||++|++++ +-..+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l-~~~~i~~   33 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTY-PEWHVAT   33 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC-TTSEEEC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH-hhcCCcc
Confidence            7899999999999999999999987 6555543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.56  E-value=3.9e-07  Score=80.49  Aligned_cols=35  Identities=26%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG  258 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g  258 (520)
                      -.+++|+|+|+|||||||+|+.|+++| |+.+++..
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~-~~~~i~~~   39 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEY   39 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHh-CCCeEeee
Confidence            467899999999999999999999998 99998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=3.8e-07  Score=82.41  Aligned_cols=159  Identities=18%  Similarity=0.162  Sum_probs=89.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc--------chHHHHhhhhcCCccchHH----
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG--------LNSRIKSSVSAGDFVNRDV----  292 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~--------~g~~i~~~l~~G~~vPd~l----  292 (520)
                      .++|+|+||+||||+|++++|.+++++ .++++...-|   .- ..+..        .-+.....+..|..+....    
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~~~~tTR---~~-r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~   76 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTR---AP-RPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGG   76 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESS---CC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC-CeEEEEeecc---CC-CccccCCcceeeccchhhhhhhcccccchhhhcccC
Confidence            467999999999999999999999844 4555544444   11 11111        1123444444443322110    


Q ss_pred             ------HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHH
Q psy11031        293 ------VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRL  363 (520)
Q Consensus       293 ------v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl  363 (520)
                            ...-+...+.     .+.-+++|.-   ..-+..+......+-.|+++.++.+.+.   +.|..++.+.+++|+
T Consensus        77 ~~~~g~~~~~~~~~~~-----~g~~~i~~~~---~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl  148 (182)
T d1znwa1          77 LHRSGTLAQPVRAAAA-----TGVPVLIEVD---LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRL  148 (182)
T ss_dssp             TEEEEEEHHHHHHHHH-----HTCCEEEECC---HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             ccccccccchhhhhhh-----cCCccccccc---cchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHH
Confidence                  1111222222     2456777766   4445555555544333455566655442   356667899999999


Q ss_pred             HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031        364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL  403 (520)
Q Consensus       364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I  403 (520)
                      ..+....    .++..-+ .+ |. +.+.++.++++.+.|
T Consensus       149 ~~~~~e~----~~~~~fD-~v-I~-Nddle~a~~~l~~iI  181 (182)
T d1znwa1         149 DTARIEL----AAQGDFD-KV-VV-NRRLESACAELVSLL  181 (182)
T ss_dssp             HHHHHHH----HGGGGSS-EE-EE-CSSHHHHHHHHHHHH
T ss_pred             HHHHHHH----hhHhcCC-EE-EE-CcCHHHHHHHHHHHh
Confidence            8776432    3332212 23 33 347888888888765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.6e-08  Score=87.78  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL  261 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl  261 (520)
                      .++.+|||+|+|||||||+|+.|++++ ++.++++..+.
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l-~~~~~~~~~~~   54 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYL-VCHGIPCYTLD   54 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCCccchh
Confidence            357899999999999999999999986 77666655443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=2.6e-07  Score=84.63  Aligned_cols=167  Identities=19%  Similarity=0.229  Sum_probs=92.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCC----cchHHHHhhhhcCCccchHH--------HHH
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGE----GLNSRIKSSVSAGDFVNRDV--------VLD  295 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t----~~g~~i~~~l~~G~~vPd~l--------v~~  295 (520)
                      |+|+||+||||+|++++|++++++..+.+.....|..-.....+.    ...+.+...+..|..+....        ..+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            889999999999999999998744444544333330000000111    11234555555565543211        112


Q ss_pred             HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC-hhhhh---ccCCCCCHHHHHHHHHHHHHHhH
Q psy11031        296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS-KLVLH---KGQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~-~~~~~---r~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      -+...+.     .++.++++.-   ..-+..+..... .+..|++..+ .+.+.   +.|..++.+.+.+|+..+.....
T Consensus        83 ~v~~~~~-----~g~~~~~~~~---~~~~~~l~~~~~-~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~  153 (190)
T d1lvga_          83 AVRAVQA-----MNRICVLDVD---LQGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME  153 (190)
T ss_dssp             HHHHHHH-----TTCEEEEECC---HHHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhc-----CCCceeecch---Hhhhhhhhhccc-cceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            2223233     3556777775   344444544433 3345555554 34432   35677889999999987765432


Q ss_pred             HHHHHhhhCC--CEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVET--RLTIVDGDTQLPQVREEFERVLKKIIDD  409 (520)
Q Consensus       372 ~l~~~y~~~~--~l~~IDa~~~~e~V~~~I~~~I~~~i~~  409 (520)
                          +....+  .++.+|  .+.++.+++|.+.|...+++
T Consensus       154 ----~~~~~~~fd~iI~N--~dle~a~~~l~~iI~~~~~k  187 (190)
T d1lvga_         154 ----SSKEPGLFDLVIIN--DDLDKAYATLKQALSEEIKK  187 (190)
T ss_dssp             ----GGGSTTTCSEEEEC--SSHHHHHHHHHHHTHHHHHH
T ss_pred             ----hhhhcCCCCEEEEC--cCHHHHHHHHHHHHHHHHhc
Confidence                222212  134344  37888888888877766654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=4.3e-08  Score=89.73  Aligned_cols=117  Identities=13%  Similarity=0.025  Sum_probs=59.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh----hhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL----GKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~----gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      |.+|+++|.|||||||+|++|++++ ++.++++    +|.+|   ...................+.....++....+...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l-~~~~~~~~~~~~D~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYL-NFIGVPTREFNVGQYR---RDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV   77 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEHHHHH---HHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH-HhcCCCCeEEccccee---hhhccccccccccccccccchhhHHHHHHHHHHHH
Confidence            7889999999999999999999875 6544333    34566   22211111111100000001111223333333333


Q ss_pred             HhccccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChh
Q psy11031        301 MKKTKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKL  345 (520)
Q Consensus       301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~  345 (520)
                      +.........-+|+|+-..+..+-+.+.+..   ..+..++...|++.
T Consensus        78 ~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  125 (213)
T d1bifa1          78 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDP  125 (213)
T ss_dssp             HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCH
T ss_pred             HHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHH
Confidence            3310122345688998777766655555433   22233455566654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.37  E-value=9.6e-07  Score=82.19  Aligned_cols=167  Identities=10%  Similarity=0.091  Sum_probs=82.8

Q ss_pred             cCCCCCeEEEEEcCCCCChhHHHHHHHhhCC---CC--eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH
Q psy11031        220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NW--TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL  294 (520)
Q Consensus       220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~--~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~  294 (520)
                      +...++.+|||.|.|||||||+|+.|++++.   ++  .+++ ||.+|   +...........-+.          +.+.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ld-gD~iR---~~l~~~l~ys~~~r~----------~~~~   84 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNIR---FGLNKDLGFSEADRN----------ENIR   84 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHHT---TTTTTTCCSSHHHHH----------HHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEc-chHHH---HhhcCCCCCChhHHH----------HHHH
Confidence            4567889999999999999999999986431   33  3333 47777   443222111111111          1122


Q ss_pred             HHHHHHHhccccCCCcEEEEeCC-CC--CHHHHHHHHhhc------CCCCCEEEecCChhhhhccCCCCCHHHHHHHHHH
Q psy11031        295 DIVYAEMKKTKYTEADGIVIDGF-PR--EMSQLIDFENKY------QIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLEL  365 (520)
Q Consensus       295 ~ll~~~l~~~~~~~~~G~ILDGF-Pr--t~~Qae~l~~~~------~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~  365 (520)
                      .+..-...  ....+..+|++.- |.  ..+++..+....      ..+...||++||.+.+.++....   ...+....
T Consensus        85 r~~~~a~~--~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~---~y~~~~~~  159 (208)
T d1m7ga_          85 RIAEVAKL--FADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG---LYKKAREG  159 (208)
T ss_dssp             HHHHHHHH--HHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC---HHHHHHHT
T ss_pred             HHHHHHHH--HhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc---chhhhhcC
Confidence            22222111  2234566777753 32  234444333221      12234689999998765432221   00000000


Q ss_pred             HHHHhHHHHHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031        366 FRERTLPMLRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKK  405 (520)
Q Consensus       366 f~~~~~~l~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~  405 (520)
                      ..++...+-.-|+. .+.-++||.+ .++++..++|.+.|..
T Consensus       160 ~~~~~~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         160 VIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             SSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             cccceecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            00111111122432 1223568866 5888888888776654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.36  E-value=3.2e-08  Score=87.62  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=27.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      ...+.+|||+|+|||||||+|+.|++++ +..++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L-~~~~~   35 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTL-NQQGG   35 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCC
Confidence            4567899999999999999999999986 54443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=2.1e-06  Score=77.94  Aligned_cols=164  Identities=16%  Similarity=0.202  Sum_probs=87.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCC----cchHHHHhhhhcCCccchHH--------HHH
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGE----GLNSRIKSSVSAGDFVNRDV--------VLD  295 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t----~~g~~i~~~l~~G~~vPd~l--------v~~  295 (520)
                      |+|+||+||||+|++++|+++++....+....--|..-.....+.    -..+.....+.+|..+-...        ...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            899999999999999999998743333332222220000000111    11234555555555433210        112


Q ss_pred             HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCC-EEEecCChhhhh---ccCCCCCHHHHHHHHHHHHHHhH
Q psy11031        296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP-MILIDCSKLVLH---KGQIDNSVSAFRRRLELFRERTL  371 (520)
Q Consensus       296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~-VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f~~~~~  371 (520)
                      -+...+.     .+..+|+|+.|.-..++   .+....... ||++..+.+.+.   +.|..++.+.+.+|+..+.....
T Consensus        84 ~i~~~~~-----~g~~~i~~~~~~~~~~l---k~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~  155 (186)
T d1gkya_          84 SVKQVSK-----SGKTCILDIDMQGVKSV---KAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA  155 (186)
T ss_dssp             HHHHHHH-----HTSEEEEECCHHHHHHH---HTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhc-----CCCeEEecchHHHHHHH---HHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence            2223233     35678999886554444   333222233 455566665432   35666788999999987664322


Q ss_pred             HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                         ..+...-..+.+|  .+.+...++|.+.|.
T Consensus       156 ---~~~~~~fd~vI~N--~dle~a~~~l~~iI~  183 (186)
T d1gkya_         156 ---YAETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             ---HHTTTCSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             ---hhhhcCCCEEEEC--cCHHHHHHHHHHHHH
Confidence               1121111233333  478888888887764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.26  E-value=4.1e-06  Score=75.80  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      +..+|.+|+|.|+.||||||+|+.|++++ +-..+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l-~~~~~   38 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYK-NDICL   38 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGT-TTEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHh-CCcEE
Confidence            45678999999999999999999999987 55544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.6e-06  Score=76.14  Aligned_cols=37  Identities=32%  Similarity=0.547  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCC----------eeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNW----------TQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~----------~~is~gdLlr  262 (520)
                      |.+|-|.|++||||||+|+.|++.+ +.          ..|++++..+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l-~~~~~~~~~~~~~vi~~D~yy~   48 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSFYR   48 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh-chhccccCCCceEEEecccccc
Confidence            6788999999999999999999986 54          3566666544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=3.4e-05  Score=71.21  Aligned_cols=165  Identities=18%  Similarity=0.206  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCC-eeeehhhHHhhhhcccccCCc----chHHHHhhhhcCCccchHHH------
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNW-TQISLGKLLRYFANIEDDGEG----LNSRIKSSVSAGDFVNRDVV------  293 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~-~~is~gdLlr~~~~~~~~~t~----~g~~i~~~l~~G~~vPd~lv------  293 (520)
                      .+.|+|+||+||||+|+++.|.++++.. ...++..--|..-.....|..    .-+.....+.+|+.+--..+      
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            4679999999999999999999987432 333433333300011111111    12355666666655432111      


Q ss_pred             --HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEe-cCChhhh---hccCCCCCHHHHHHHHHHHH
Q psy11031        294 --LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI-DCSKLVL---HKGQIDNSVSAFRRRLELFR  367 (520)
Q Consensus       294 --~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~L-d~~~~~~---~r~R~dD~~e~~~~Rl~~f~  367 (520)
                        .+-+...+.     .++.+|+|.-+.   =+..+.+.... +.+|++ ..+.+.+   .+.|..++.+.+.+|+....
T Consensus        82 t~~~~v~~~~~-----~g~~~ildid~~---g~~~lk~~~~~-~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~  152 (205)
T d1s96a_          82 TSREAIEQVLA-----TGVDVFLDIDWQ---GAQQIRQKMPH-ARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAV  152 (205)
T ss_dssp             EEHHHHHHHHT-----TTCEEEEECCHH---HHHHHHHHCTT-CEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred             cccchHHHHHh-----cCCceeecCcHH---HHHHHHhhhcc-cceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence              222233333     577899997744   34555555443 344444 4344332   23677788899999998766


Q ss_pred             HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ...    .++.. -..+.+|  .+.+..++++.+.|..
T Consensus       153 ~E~----~~~~~-fD~vIvN--ddl~~a~~el~~iI~~  183 (205)
T d1s96a_         153 AEM----SHYAE-YDYLIVN--DDFDTALTDLKTIIRA  183 (205)
T ss_dssp             HHH----TTGGG-SSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred             HHH----HHHhC-CCEEEEC--cCHHHHHHHHHHHHHH
Confidence            543    22222 1234444  4788888998888854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.05  E-value=2.5e-06  Score=80.63  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC-CCCeeeehhhHHhhhhcccccCCcchH-HHHhhhhcCCccchHHHHHHHHH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY-PNWTQISLGKLLRYFANIEDDGEGLNS-RIKSSVSAGDFVNRDVVLDIVYA  299 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~-~g~~~is~gdLlr~~~~~~~~~t~~g~-~i~~~l~~G~~vPd~lv~~ll~~  299 (520)
                      ...|..|+|.|||||||||+|+.|++.+ .++..++.+++..   ... ....+.. ............+..+....+..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ---QHP-NFDELVKLYEKDVVKHVTPYSNRMTEAIISR  104 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT---TST-THHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH---Hhc-cCcccchhhhHHHHHHHHhhccchHHHHHHH
Confidence            3457789999999999999999999975 2557777766543   111 1000000 01111111011111223333333


Q ss_pred             HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCC---EEEecCChh
Q psy11031        300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP---MILIDCSKL  345 (520)
Q Consensus       300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~---VI~Ld~~~~  345 (520)
                      .+.     ...+.++|...+.......+...+.....   +.+++++..
T Consensus       105 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  148 (273)
T d1gvnb_         105 LSD-----QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI  148 (273)
T ss_dssp             HHH-----HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHH
T ss_pred             HHh-----hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCch
Confidence            333     35677888877776666555554443333   344555554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=0.00045  Score=62.80  Aligned_cols=138  Identities=8%  Similarity=0.033  Sum_probs=82.2

Q ss_pred             CcccCcHHHHHHHHHHccCCCCCCCCHHHHH-------------HHHHHHHhcCCCCCcEEEeCC----------CCCHH
Q psy11031         14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT-------------EVLMLEMKMSPAAKAFLISGY----------PRNMR   70 (520)
Q Consensus        14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~-------------~ll~~~l~~~~~~~G~ILDGF----------PRt~~   70 (520)
                      -|..+.+|..++..+..+...+....+....             +++...+.   ...-+|.|.|          .+...
T Consensus        39 ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~---~~~~vi~DRy~~s~~~~~~~~~~~~  115 (210)
T d4tmka_          39 EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRGID  115 (210)
T ss_dssp             SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTCCC
T ss_pred             CCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH---cCCcccccchhhhhhhhhccccccc
Confidence            3455688999999988775333222221111             11122222   1233455744          44443


Q ss_pred             hHHH--HHH---hcCCcCEEEEEEcCHHHHHHHh-hhCccCCccc---hHHHHHHHHHHHhccchHHHHhhhCCcEEEEe
Q psy11031         71 DVVE--YSD---KIKTINGVILIAWRQSLLERQI-DYGAKLGHVI---LSLARMELANFYQNVTPVTDFFDQRGMLIAVN  141 (520)
Q Consensus        71 QA~~--~~~---~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d---~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Id  141 (520)
                      ....  +..   ....||++|+|+||.+++.+|+ .|+.. .+.+   .+-..+--+.|.       +++.+...++.||
T Consensus       116 ~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~-~~~~~~~~~~~~~v~~~y~-------~~~~~~~~~~~ID  187 (210)
T d4tmka_         116 QHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL-DRIEQESFDFFNRTRARYL-------ELAAQDKSIHTID  187 (210)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-CTTTTSCHHHHHHHHHHHH-------HHHHTCTTEEEEE
T ss_pred             hhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhcccc-chhhhccHHHHHHHHHHHH-------HHHhcCCCEEEEE
Confidence            3311  111   2358999999999999999999 46543 2321   333333333442       3445555689999


Q ss_pred             CCCChHHHHHHHHHHHHHHhc
Q psy11031        142 GERNPVEVYADFRTAVLKILN  162 (520)
Q Consensus       142 a~~~~eeV~~~i~~~l~~~~~  162 (520)
                      |++++++|.++|.+.|+..+.
T Consensus       188 a~~~~e~v~~~I~~~i~~~l~  208 (210)
T d4tmka_         188 ATQPLEAVMDAIRTTVTHWVK  208 (210)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999998763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00022  Score=65.56  Aligned_cols=136  Identities=11%  Similarity=0.135  Sum_probs=81.3

Q ss_pred             ccCcc-cCcHHHHHHHHHHccCCCCCCCCHHHHHHHH-----------HHHHhcCCCCCcEEEeCCCCCH----------
Q psy11031         12 LDFPS-HRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL-----------MLEMKMSPAAKAFLISGYPRNM----------   69 (520)
Q Consensus        12 ~~~~~-h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll-----------~~~l~~~~~~~G~ILDGFPRt~----------   69 (520)
                      +..|. .+.+|+.++.++....    .+......-+.           ...+.   ....+|+|.|.-+.          
T Consensus        37 ~~~p~~~~~~~~~i~~~l~~~~----~~~~~~~~~l~~~~r~~~~~~i~~~l~---~g~~VI~DRy~~s~~ay~~~~~~~  109 (209)
T d1nn5a_          37 LRFPERSTEIGKLLSSYLQKKS----DVEDHSVHLLFSANRWEQVPLIKEKLS---QGVTLVVDRYAFSGVAFTGAKENF  109 (209)
T ss_dssp             EESSCTTSHHHHHHHHHHTTSS----CCCHHHHHHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHTSTTC
T ss_pred             EeCCCCCcccchhhhhhhhccc----ccchhhhhhHHHHHHHHHHHhHHHHhh---cccceeecchhhhhhhhhhhccCc
Confidence            33452 3467888999888776    56655543332           22222   23568999885321          


Q ss_pred             --HhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCcc-chHHHHHHHHHHHhccchHHHHhhhC-CcEEEEeCCCC
Q psy11031         70 --RDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHV-ILSLARMELANFYQNVTPVTDFFDQR-GMLIAVNGERN  145 (520)
Q Consensus        70 --~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Ida~~~  145 (520)
                        .....+...+..||++|+|+||-+++.+|...+..  |. +.+-..+..+.|.+       ++++. +.++.|||+++
T Consensus       110 ~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~--~~E~~~~~~r~~~~Y~~-------l~~~~~~~~~~IDa~~~  180 (209)
T d1nn5a_         110 SLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE--RYENGAFQERALRCFHQ-------LMKDTTLNWKMVDASKS  180 (209)
T ss_dssp             CHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C--TTCSHHHHHHHHHHHHH-------HTTCTTSCEEEEETTSC
T ss_pred             cHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc--ccccHHHHHHHHHHHHH-------HHHhCCCCEEEEECCCC
Confidence              11111111234799999999999999998742211  11 22223333344543       22222 34899999999


Q ss_pred             hHHHHHHHHHHHHHHhcc
Q psy11031        146 PVEVYADFRTAVLKILNK  163 (520)
Q Consensus       146 ~eeV~~~i~~~l~~~~~~  163 (520)
                      +++|.++|..+++..+..
T Consensus       181 ~e~V~~~I~~~v~~~l~~  198 (209)
T d1nn5a_         181 IEAVHEDIRVLSEDAIAT  198 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00026  Score=63.52  Aligned_cols=159  Identities=14%  Similarity=0.270  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc----chHHHHhhhhcCCccchHHH--------
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG----LNSRIKSSVSAGDFVNRDVV--------  293 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~----~g~~i~~~l~~G~~vPd~lv--------  293 (520)
                      +.|+|+||.||||+|++++|.+++++....+...--|..-.....|..    .-+.+...+..|+.+--..+        
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt~   83 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK   83 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceeee
Confidence            458999999999999999999887544433332222200011111111    12455555666654332110        


Q ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHH-
Q psy11031        294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP-  372 (520)
Q Consensus       294 ~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~-  372 (520)
                      ..-+...+.     .++-+|+|.-+.-..+.   ... ...+.+|++.-+...  +++  +..+.++ |+..-.+.... 
T Consensus        84 ~~~i~~~~~-----~g~~~ildid~~g~~~l---k~~-~~~~~~IfI~pps~~--~~~--~~~~~~~-r~~~~~~~~e~~  149 (178)
T d1kgda_          84 LETIRKIHE-----QGLIAILDVEPQALKVL---RTA-EFAPFVVFIAAPTIT--PGL--NEDESLQ-RLQKESDILQRT  149 (178)
T ss_dssp             HHHHHHHHH-----TTCEEEEECCGGGHHHH---SST-TTCEEEEEEECCSCC--TTS--CCSHHHH-HHHHHHHHHHHH
T ss_pred             eecccchhc-----cCceEEeccchhhhhhh---hcc-ccccceeeEeccccc--ccc--chHHHHH-HHHHHHHHHHHH
Confidence            122233333     45678888765554443   222 223446777544311  111  2223333 33322222221 


Q ss_pred             HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031        373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLK  404 (520)
Q Consensus       373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~  404 (520)
                      ...+|+    .+.+|  .+.++.+++|.+.|+
T Consensus       150 ~~~~fD----~vIvN--ddle~a~~el~~iI~  175 (178)
T d1kgda_         150 YAHYFD----LTIIN--NEIDETIRHLEEAVE  175 (178)
T ss_dssp             HGGGCS----EEEEC--SSHHHHHHHHHHHHH
T ss_pred             hhcCCC----EEEEC--CCHHHHHHHHHHHHH
Confidence            112332    34454  368888888777664

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.61  E-value=8.9e-05  Score=64.93  Aligned_cols=140  Identities=4%  Similarity=-0.096  Sum_probs=89.1

Q ss_pred             cCcHHHHHHHHHHccCC-----CCCCCCH---HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHH------HHHHhcCCc
Q psy11031         17 HRNPLKMFNLFVSEEVK-----DFSFLSS---KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVV------EYSDKIKTI   82 (520)
Q Consensus        17 h~s~G~~l~~~i~~G~~-----~g~lVPd---elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~------~~~~~~~~p   82 (520)
                      .++.|...+........     .-...+.   .....+..+.+........+|+|||+++..+..      .+......+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~  113 (190)
T d1khta_          34 MVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP  113 (190)
T ss_dssp             EEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHHHCC
T ss_pred             EEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhCCCeEEECCcccchHHHHHHHhhhhhhhhhccc
Confidence            45667777666554320     0001122   222333333443333567899999998754431      222334589


Q ss_pred             CEEEEEEcCHHHHHHHh-hhCccCCcc-chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         83 NGVILIAWRQSLLERQI-DYGAKLGHV-ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        83 d~VI~L~~pd~~l~~Rl-~rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +.+|+|+++.+++.+|+ .++.. +|. +.....++...++.........|.+....+.+|+++++++++++|.++|
T Consensus       114 ~~~i~l~~~~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         114 DLIIVVETTGDEILMRRMSDETR-VRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             SEEEEEECCHHHHHHHHHTSSSC-SSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cceeeecCCHHHHHHHHHHhccc-cCCcccHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            99999999998877776 44332 443 2334456777778777777777877655667889999999999999876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.48  E-value=0.00016  Score=63.59  Aligned_cols=103  Identities=10%  Similarity=0.032  Sum_probs=78.3

Q ss_pred             CCCCcEEEeCCCCCHHhHH------HHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCcc--chHHHHHHHHHHHhccch
Q psy11031         55 PAAKAFLISGYPRNMRDVV------EYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHV--ILSLARMELANFYQNVTP  126 (520)
Q Consensus        55 ~~~~G~ILDGFPRt~~QA~------~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~--d~e~i~~Rl~~Y~~~t~p  126 (520)
                      ....++++|+++++..+..      ........|+++|+|+++.+++.+|+.......|.  ..+.+.+++..|.+.+..
T Consensus        83 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~  162 (194)
T d1nksa_          83 GGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAAT  162 (194)
T ss_dssp             TCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhHHH
Confidence            4577899999987655430      11112237999999999999999998432222343  367788999999999988


Q ss_pred             HHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031        127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                      .+..|.....++.++++++++|+.++|.+.|
T Consensus       163 ~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         163 ASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            8888888777777889999999999998876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.43  E-value=3.4e-05  Score=71.93  Aligned_cols=36  Identities=14%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      ++|.|.|+.||||||+|+.|+++| |+.+++++|.++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-g~~~i~~aD~i~   37 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-SAVKYQLAGPIK   37 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-CEEECCTTHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-CCeEEcccHHHH
Confidence            479999999999999999999998 999999877776

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.26  E-value=0.00024  Score=64.72  Aligned_cols=147  Identities=10%  Similarity=-0.007  Sum_probs=91.7

Q ss_pred             ccccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC----------CCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031         10 SLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS----------PAAKAFLISGYPRNMRDVVEYSD--   77 (520)
Q Consensus        10 ~~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~----------~~~~G~ILDGFPRt~~QA~~~~~--   77 (520)
                      .-|+++ |+|.|+++|++.......|....+..-...........          ....++..++++++..++.....  
T Consensus        25 ~~lg~~-~istGdl~R~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ia  103 (223)
T d1q3ta_          25 KDFGFT-YLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIA  103 (223)
T ss_dssp             HHHCCE-EEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEEETTEEESSSSCSHHHHHHHHHHH
T ss_pred             HHhCCc-EECHHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhhhhcccchhhhHHhhcCcccccchhhHHHHhHHHHHh
Confidence            345788 99999999987765544444555443333222222110          01478999999999887632111  


Q ss_pred             h------------------c--------------CCcCEEEEEEcCHHHHHHHh-hhCc--cCC-cc--chHHHHHH-HH
Q psy11031         78 K------------------I--------------KTINGVILIAWRQSLLERQI-DYGA--KLG-HV--ILSLARME-LA  118 (520)
Q Consensus        78 ~------------------~--------------~~pd~VI~L~~pd~~l~~Rl-~rg~--~~~-r~--d~e~i~~R-l~  118 (520)
                      .                  .              ...+..+++.++......|. .+..  ... +.  ..+.+++| ..
T Consensus       104 ~~~~~r~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~Rd~~  183 (223)
T d1q3ta_         104 AIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYK  183 (223)
T ss_dssp             TSHHHHHHHHHHHHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CChhhhHHHHHHHHHHHhcCCceeeecccccccccccchhhhcccchhhhhhhhhhhhhhcccccchHHHHHHHHHHHHH
Confidence            0                  0              03557889999877655544 2211  111 11  25567777 55


Q ss_pred             HHHhccchHHHHhhhCCcEEEEe-CCCChHHHHHHHHHHHHHHh
Q psy11031        119 NFYQNVTPVTDFFDQRGMLIAVN-GERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       119 ~Y~~~t~pvi~~Y~~~~~l~~Id-a~~~~eeV~~~i~~~l~~~~  161 (520)
                      .|.+.+.|+..++.   . +.|| ++.+++||+++|.+.++..+
T Consensus       184 D~~r~~~pL~~~~~---~-i~Idts~~s~eeV~~~I~~~i~kkl  223 (223)
T d1q3ta_         184 DSHRETSPLKQAED---A-VYLDTTGLNIQEVVEKIKAEAEKRM  223 (223)
T ss_dssp             HTTCSSSCCSCCTT---C-EEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred             hhhcccCCCccCCC---e-EEEECCCCCHHHHHHHHHHHHHhhC
Confidence            68889999987643   2 3466 55799999999999998653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00063  Score=58.85  Aligned_cols=91  Identities=9%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCc-cchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGH-VILSLARMELANFYQNVTPVTDFFDQRG  135 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r-~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~  135 (520)
                      ...+.++|+-...+...+......+..+|+|+||.+++.+|+. |+   ++ ...+.+..+++.|.+-.      |. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~---~~~~~~~~~~~~~~~~e~~~------~~-e~  147 (171)
T d1knqa_          78 NKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK---GHFFKTQMLVTQFETLQEPG------AD-ET  147 (171)
T ss_dssp             CSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTST---TCCCCHHHHHHHHHHCCCCC------TT-CT
T ss_pred             cCceEeeccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCc---CCCccHHHHHhhHHHhhCCC------cc-cC
Confidence            3445555555555555677777788899999999999999994 42   23 24566666776665421      22 33


Q ss_pred             cEEEEeCCCChHHHHHHHHHHHH
Q psy11031        136 MLIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus       136 ~l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                      .++.||+++++++|.++|.+.|+
T Consensus       148 ~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         148 DVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             TEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhc
Confidence            47889999999999999999885

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.19  E-value=4.8e-05  Score=67.67  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=24.9

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....|.+|.|.|++||||||+|+.|++.+
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34467788899999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=8.5e-05  Score=64.43  Aligned_cols=23  Identities=13%  Similarity=0.262  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |+|+|.|++||||||+++.|+++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            68999999999999999999875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=97.10  E-value=0.0017  Score=63.90  Aligned_cols=24  Identities=21%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+|.|.|+-||||||+++.|++.+
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999999876

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.05  E-value=0.0054  Score=60.21  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|+|.|+-||||||+++.|++.+
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHh
Confidence            35789999999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00019  Score=66.43  Aligned_cols=31  Identities=16%  Similarity=0.198  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      ++.+++.||||+||||+|+.|++++ ++..+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~-~~~~~~   65 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASEL-QTNIHV   65 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH-TCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhcc-CCCccc
Confidence            4568999999999999999999997 776654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.82  E-value=0.0048  Score=60.44  Aligned_cols=25  Identities=24%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+|.|.|+-||||||+++.|++.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC--
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHh
Confidence            4579999999999999999999875

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.006  Score=55.20  Aligned_cols=164  Identities=13%  Similarity=0.212  Sum_probs=86.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc-----chHHHHhhhhcCCccchHHH-----
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG-----LNSRIKSSVSAGDFVNRDVV-----  293 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~-----~g~~i~~~l~~G~~vPd~lv-----  293 (520)
                      .+.-|+|+||   ||+|+.++|.+.++.....++..--|.--.....|..     .-+.....+.+|..+--..+     
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~Y   84 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY   84 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCcc
Confidence            3444777776   6999999999988654444443333400001111111     11245555555554321100     


Q ss_pred             ---HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hhhccCCCCCHHHHHHHHHHHHHH
Q psy11031        294 ---LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VLHKGQIDNSVSAFRRRLELFRER  369 (520)
Q Consensus       294 ---~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~~r~R~dD~~e~~~~Rl~~f~~~  369 (520)
                         ..-+...+.     .++.+|+|.=|....+   +.... ..+.+|||..+.. .+.+.|...+.+.+++|++...+.
T Consensus        85 Gt~~~~i~~~~~-----~gk~~lldid~~g~~~---lk~~~-~~~i~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~~~  155 (199)
T d1kjwa2          85 GTSVQSVREVAE-----QGKHCILDVSANAVRR---LQAAH-LHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKL  155 (199)
T ss_dssp             EEEHHHHHHHHH-----TTCEEEECCCTTHHHH---HHHTT-CCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred             ceeeeEEEehhc-----CCCcccccccchHHhh---hhhhc-cceeEEeeccccHHHHHhhhccccHHHHHHHHHHHHHH
Confidence               222333344     4678999976554444   43332 3456889987543 233333445677888888765544


Q ss_pred             hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031        370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK  405 (520)
Q Consensus       370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~  405 (520)
                      ...+..+|+    .+ |. +.+.++.+++|.+.|.+
T Consensus       156 e~~~~~~fd----~v-I~-Nddle~a~~~l~~iI~~  185 (199)
T d1kjwa2         156 EQEFTECFS----AI-VE-GDSFEEIYHKVKRVIED  185 (199)
T ss_dssp             HHHHGGGCS----EE-EC-CSSHHHHHHHHHHHHHH
T ss_pred             HHHhhccCC----EE-EE-CcCHHHHHHHHHHHHHH
Confidence            344434443    23 33 34677777777666544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.00042  Score=65.48  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      .|+-|++.||||||||++|+.|++.+ |+..+  ++++++.
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~-~~~~~~i~~~~l~~   80 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVE   80 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHc-CCCEEEEEhHHhhh
Confidence            45669999999999999999999997 87764  5567776

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00034  Score=66.57  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR  262 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr  262 (520)
                      .|+-|++.||||||||++|+.||+.+ ++..  +++++++.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~-~~~~~~i~~~~l~~   83 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFVE   83 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEECSCSSTT
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc-CCCEEEEEhHHhhh
Confidence            46679999999999999999999986 7765  55666665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.75  E-value=0.00027  Score=61.82  Aligned_cols=23  Identities=22%  Similarity=0.588  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|+|.|||||||||+++.|+..+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhcC
Confidence            69999999999999999999865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00054  Score=63.58  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI  255 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i  255 (520)
                      ..++.++|.||||+||||.|+.||+.+ ++.++
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~-~~~~~   81 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL-GYDIL   81 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT-TCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH-Hhhhh
Confidence            345679999999999999999999997 77654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00026  Score=61.53  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.|+|.|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            459999999999999999999764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.00038  Score=64.47  Aligned_cols=32  Identities=13%  Similarity=0.210  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      .++-+++.||||+||||+|+.|++.+ ++....
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~-~~~~~~   65 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHEL-GVNLRV   65 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHH-TCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh-CCCeEe
Confidence            35668999999999999999999987 765443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.68  E-value=0.00044  Score=65.25  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      +.-|++.||||||||++|+.||+.. |++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~-~~~~~~i   71 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEES-NFPFIKI   71 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH-TCSEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcc-ccccccc
Confidence            4559999999999999999999986 8766644

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.67  E-value=0.0031  Score=54.31  Aligned_cols=131  Identities=8%  Similarity=-0.020  Sum_probs=76.7

Q ss_pred             cCcHHHHHHHHHHcc---CCCCCCCCHHHHHHHHHHHHhc-CCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCH
Q psy11031         17 HRNPLKMFNLFVSEE---VKDFSFLSSKTVTEVLMLEMKM-SPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQ   92 (520)
Q Consensus        17 h~s~G~~l~~~i~~G---~~~g~lVPdelv~~ll~~~l~~-~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd   92 (520)
                      +++.+.........+   ...+..++++.....+.+.+.. .....++++|++++..-+.       ..++.+|+|+||.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~vI~L~~~~  106 (174)
T d1y63a_          34 HLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPE-------RWFHMVVVLHTST  106 (174)
T ss_dssp             EEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEEEECSCCTTSCG-------GGCSEEEEEECCH
T ss_pred             EEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhcccccccHHHHHHHHH-------hcCceEEEEECCH
Confidence            566555554432222   2244566666666666666643 2457899999999976443       3567899999999


Q ss_pred             HHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         93 SLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        93 ~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      +++.+|+. |+....+....   ...+.+........++|... .++. +.+.+++++.+.|.++++.
T Consensus       107 e~l~~Rl~~R~~~~~~~~~~---~~~e~~~~~~~~~~~~~~~~-~~i~-~~~~t~ee~~~~V~~I~~~  169 (174)
T d1y63a_         107 EVLFERLTKRQYSEAKRAEN---MEAEIQCICEEEARDAYEDD-IVLV-RENDTLEQMAATVEEIRER  169 (174)
T ss_dssp             HHHHHHHHHTTCCHHHHHHH---HHHHHTTHHHHHHHHHSCGG-GEEE-EECSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccc---hhhhhhhhhHHHHHHhhcCC-EEEE-CCCCCHHHHHHHHHHHHHH
Confidence            99999994 54321111110   01122222333455667644 3333 4467899998888777654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.01  Score=54.01  Aligned_cols=140  Identities=12%  Similarity=0.114  Sum_probs=70.4

Q ss_pred             cCcHHHHHHHHHHccCCCCCCCCHHHHHHHH--HHH------HhcC-CCCCcEEEeCCCCC--------------HHhHH
Q psy11031         17 HRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL--MLE------MKMS-PAAKAFLISGYPRN--------------MRDVV   73 (520)
Q Consensus        17 h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll--~~~------l~~~-~~~~G~ILDGFPRt--------------~~QA~   73 (520)
                      .+.+|.+++.++....  + .+++.. ..++  ..+      +... .....+|.|-|.-+              +....
T Consensus        40 ~~~~g~~ir~~l~~~~--~-~~~~~~-~~llf~a~r~~~~~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~  115 (214)
T d1tmka_          40 STRIGGLINEYLTDDS--F-QLSDQA-IHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCL  115 (214)
T ss_dssp             TSHHHHHHHHHHHCTT--C-CCCHHH-HHHHHHHHHHTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHH
T ss_pred             CchHhHhHHHhhhhcc--c-cccchH-HHHHHHHHHHHHHHHHHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHH
Confidence            4567899999887654  1 233332 2222  111      2110 12456778977432              22221


Q ss_pred             HHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeC-CCChHHHHH
Q psy11031         74 EYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNG-ERNPVEVYA  151 (520)
Q Consensus        74 ~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida-~~~~eeV~~  151 (520)
                      .+......||++|+|+++......|. .++.. ...+.+-..+--+.|.+-...-...+.  ..++.||+ ++++++|.+
T Consensus       116 ~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~-~~e~~~~~~~v~~~Y~~l~~~~~~~~~--~~~~iID~s~~~~eev~~  192 (214)
T d1tmka_         116 QPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE-RYETVKFQEKVKQTFMKLLDKEIRKGD--ESITIVDVTNKGIQEVEA  192 (214)
T ss_dssp             GGGTTSBCCSEEEEEECC----------CCSS-TTCCHHHHHHHHHHHHHHHHHHHHTTC--TTEEEEECTTCCHHHHHH
T ss_pred             HHHhcCCCcceehhccccHHHHHHHhcccchh-hhhhHHHHHHHHHHHHHHHHHhhhhCC--CcEEEEECCCCCHHHHHH
Confidence            11222348999999999887666554 23221 111222222223444433222222222  34888997 489999999


Q ss_pred             HHHHHHHHHhcc
Q psy11031        152 DFRTAVLKILNK  163 (520)
Q Consensus       152 ~i~~~l~~~~~~  163 (520)
                      +|...|+..+..
T Consensus       193 ~I~~~v~~~l~~  204 (214)
T d1tmka_         193 LIWQIVEPVLST  204 (214)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHh
Confidence            999999998854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.60  E-value=0.00043  Score=67.43  Aligned_cols=37  Identities=19%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr  262 (520)
                      |.-|+++||||+|||++|+.||+.+ +  +..++++++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~-~~~~~~i~~s~~~~   87 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTE   87 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGGSS
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcc-ccchhccccccccc
Confidence            4568899999999999999999985 5  45677777754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.40  E-value=0.019  Score=49.81  Aligned_cols=132  Identities=5%  Similarity=0.030  Sum_probs=73.8

Q ss_pred             cccCcccCcHHHHHHHHHHccCCCCCCCCH-------HHHHHHHHHHHhcCCCCCcEEEe--CCCCCHHhHHHHHHhcCC
Q psy11031         11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSS-------KTVTEVLMLEMKMSPAAKAFLIS--GYPRNMRDVVEYSDKIKT   81 (520)
Q Consensus        11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPd-------elv~~ll~~~l~~~~~~~G~ILD--GFPRt~~QA~~~~~~~~~   81 (520)
                      -|+++ +++.+..+.+.  .|+    .+++       +...++..+.+.......+++..  |++........+...   
T Consensus        25 ~Lg~~-~id~D~~ie~~--~g~----~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---   94 (170)
T d1e6ca_          25 ALGYE-FVDTDIFMQHT--SGM----TVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGMVLLEQNRQFMRAH---   94 (170)
T ss_dssp             HHTCE-EEEHHHHHHHH--HCS----CHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTGGGSHHHHHHHHHH---
T ss_pred             HhCCC-EEehhhhhhhh--hhh----hhhhhhcccchHHHHHHHHHHHHhhccccceecccccchhhhHHHHhhhcc---
Confidence            35677 88877766543  244    4432       11122333333332233344443  444444443333322   


Q ss_pred             cCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031         82 INGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus        82 pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l  157 (520)
                       ..+|+|+||.+++.+|+. +.....|..  .......+..+.++..|+   |++.. -+.||.+++++++..+|.+.|
T Consensus        95 -~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~l---Y~~~a-~~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_          95 -GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQDVA-HYVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             -SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHHHC-SEEEETTSCHHHHHHHHHHHT
T ss_pred             -ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHH---HHHcC-CEEEcCCCCHHHHHHHHHHHc
Confidence             479999999999999994 433334432  334445555555544444   44322 257999999999998887665

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.001  Score=63.28  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr  262 (520)
                      ..++-|++.||||+|||++++.||..+ |+..+  +++++..
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~-~~~~~~~~~~~l~~   79 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLT   79 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT-TCEEEEECHHHHHT
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh-CCcEEEEEHHHhhh
Confidence            345679999999999999999999997 88765  4445554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0012  Score=62.51  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      .|.-|++.||||||||++++.++... ++..+.+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~-~~~~~~i   69 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANET-GAFFFLI   69 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHh-CCeEEEE
Confidence            35569999999999999999999986 7766544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0013  Score=63.54  Aligned_cols=41  Identities=22%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh----C---CCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD----Y---PNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k----~---~g~~~is~gdLlr  262 (520)
                      ...|.+|-|.|++||||||+|..|.+.    +   ..+..||+++++.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~   71 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   71 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence            446788999999999999999877543    1   1456689999866

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.0011  Score=67.86  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      |..|+|+||+|||||.+|+.||+.. +.+.+.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l-~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHh-CCCEEEe
Confidence            5679999999999999999999986 8887755

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.0013  Score=60.77  Aligned_cols=29  Identities=31%  Similarity=0.615  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.+|.+|+++||+|+||||-+.+||.+|
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999998654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0024  Score=62.15  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC------CCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY------PNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~------~g~~~is~gdLlr  262 (520)
                      ...|.+|.|.|++||||||+|+.|++.+      +....||+++.+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            4678899999999999999999998753      1356789998876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.04  E-value=0.0016  Score=59.58  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.++|.|||||||||+|+.|++++
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.94  E-value=0.0019  Score=64.23  Aligned_cols=34  Identities=12%  Similarity=0.077  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL  257 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~  257 (520)
                      ++.+.+++.||||+|||++|..|++.+ |...+++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~-~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC-GGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH-CCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEE
Confidence            345689999999999999999999987 9988876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0078  Score=54.73  Aligned_cols=81  Identities=12%  Similarity=0.131  Sum_probs=50.7

Q ss_pred             CcCEEEEEEcCHHHHHHHhh-hCccCC-ccc---hHHHHHHHHHHHhccc-hHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQID-YGAKLG-HVI---LSLARMELANFYQNVT-PVTDFFDQRGMLIAVNGERNPVEVYADFR  154 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~-r~d---~e~i~~Rl~~Y~~~t~-pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~  154 (520)
                      .||++|+|+++-+...+|+. |+.... ..+   .+.+.+..+.|..... .....+.+...++.|||++++++|+++|.
T Consensus       152 ~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i~  231 (241)
T d1p5zb_         152 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLV  231 (241)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHH
T ss_pred             CCceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHHH
Confidence            79999999999999999994 443211 112   1222222233222111 11111122235889999999999999999


Q ss_pred             HHHHHHh
Q psy11031        155 TAVLKIL  161 (520)
Q Consensus       155 ~~l~~~~  161 (520)
                      +.|+..+
T Consensus       232 ~~i~~~l  238 (241)
T d1p5zb_         232 EKVKEFL  238 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998776

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.92  E-value=0.0017  Score=59.93  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+..++|.||||+||||+++.|++.+
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0021  Score=57.87  Aligned_cols=77  Identities=8%  Similarity=-0.029  Sum_probs=42.7

Q ss_pred             CcCEEEEEEcCHHHHHHHhh-h---CccCCcc---chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQID-Y---GAKLGHV---ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYAD  152 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~-r---g~~~~r~---d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~  152 (520)
                      ....++.+.........|.. +   .....+.   ..+...+|+..|++.+.|+.++|.    .+.||++ .++++||++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~----~~~Id~s~~s~eeV~~~  213 (225)
T d1ckea_         138 DAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAAD----ALVLDSTTLSIEQVIEK  213 (225)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTT----CEEEETTTSCHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccccchhhhHHHHHHHHHHHhhccccCCCcccCC----EEEEECCCCCHHHHHHH
Confidence            45567888888877776652 1   1111221   255667788999999998765543    3468875 699999999


Q ss_pred             HHHHHHHHh
Q psy11031        153 FRTAVLKIL  161 (520)
Q Consensus       153 i~~~l~~~~  161 (520)
                      |.++|+..+
T Consensus       214 I~~~I~~Kl  222 (225)
T d1ckea_         214 ALQYARQKL  222 (225)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.84  E-value=0.0017  Score=56.42  Aligned_cols=24  Identities=29%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ++|.|.|.+||||||++.+|+.++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999987653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.78  E-value=0.0023  Score=58.72  Aligned_cols=27  Identities=33%  Similarity=0.329  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+|.+|+++||+||||||-+.+||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.73  E-value=0.0023  Score=58.94  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...|.+|+++||+|+||||-+.+||.+|
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0029  Score=58.24  Aligned_cols=28  Identities=25%  Similarity=0.506  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...|.+|+++||+||||||-+.+||.++
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0031  Score=57.48  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+.++|.||||+||||+++.|++++
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHHH
Confidence            3458999999999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.52  E-value=0.002  Score=62.03  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR  262 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr  262 (520)
                      .++|+|-|.|++||||||+|+.|++.+.    ....|+.++..+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            3567999999999999999998877531    335788888765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0033  Score=57.33  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.+++.||||+||||+|+.|++++
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHHH
Confidence            348899999999999999999875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.44  E-value=0.0035  Score=57.12  Aligned_cols=22  Identities=27%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|.|++||||||++++|.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            7899999999999999999854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.33  E-value=0.0043  Score=56.78  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|+++||+|+||||.+.+||..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346788999999999999999998654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0036  Score=57.60  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++.++|.||||+||||+++.+++.+
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            45568999999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.004  Score=56.60  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +.+++.||||+||||+++.|++++
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHh
Confidence            348899999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.07  E-value=0.007  Score=53.97  Aligned_cols=70  Identities=13%  Similarity=0.103  Sum_probs=42.8

Q ss_pred             CCcCEEEEEEcCHHHHHHHh-hhCccC-Ccc-c----hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031         80 KTINGVILIAWRQSLLERQI-DYGAKL-GHV-I----LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD  152 (520)
Q Consensus        80 ~~pd~VI~L~~pd~~l~~Rl-~rg~~~-~r~-d----~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~  152 (520)
                      ..||++|+|++|-++..+|+ .|+... .+. |    .....+|+..++...   .+-+ ....++.|||++++++|.++
T Consensus       131 ~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~---~~~~-~~~~~~vIDa~~~~e~V~~~  206 (208)
T d1gsia_         131 PKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAEL---AAQG-WGGRWLVVGADVDPGRLAAT  206 (208)
T ss_dssp             CCCSEEEEECCCHHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHH---HHHT-TTSEEEEECTTCCHHHHHHH
T ss_pred             cCCceeEEecccHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHH---HHhc-CCCCEEEEeCCCCHHHHHHh
Confidence            47999999999999999999 343211 111 1    122334443322221   1111 11248899999999999987


Q ss_pred             H
Q psy11031        153 F  153 (520)
Q Consensus       153 i  153 (520)
                      |
T Consensus       207 i  207 (208)
T d1gsia_         207 L  207 (208)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0064  Score=59.00  Aligned_cols=34  Identities=12%  Similarity=0.253  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHH
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLL  261 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLl  261 (520)
                      .++++||+|+|||.+|+.||+.+ +...  ++++++-
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l-~~~~i~~d~s~~~   89 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYM   89 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCS
T ss_pred             EEEEECCCcchhHHHHHHHHhhc-cCCeeEecccccc
Confidence            68899999999999999999986 6544  4665553

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.99  E-value=0.0029  Score=58.53  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .++|.||||+|||++++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.89  E-value=0.0094  Score=58.10  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             CeEEE-EEcCCCCChhHHHHHHHhhC---CCCeeeehhhHHh
Q psy11031        225 PLVVW-VVGGPGSSKSEMCQKVLQDY---PNWTQISLGKLLR  262 (520)
Q Consensus       225 p~~I~-vlG~PGSGKsT~a~~La~k~---~g~~~is~gdLlr  262 (520)
                      |+-++ +.||||+|||.+|+.||...   ..+..++.++++.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~  163 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS  163 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh
Confidence            44444 47999999999999999874   1355677767766

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.86  E-value=0.007  Score=50.96  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.|||||||++.+|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999754

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=94.76  E-value=0.12  Score=41.91  Aligned_cols=136  Identities=19%  Similarity=0.291  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT  304 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~  304 (520)
                      .|++.||.+|=|||.|.+|++.+ .++.|.-.  +|.+       +              |.    +   ++ .+...  
T Consensus         2 liilegpdccfkstvaaklskel-kypiikgssfelak-------s--------------gn----e---kl-fehfn--   49 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSFELAK-------S--------------GN----E---KL-FEHFN--   49 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHH-TCCEEECCCHHHHH-------H--------------CH----H---HH-HHHHH--
T ss_pred             eEEEeCCchhhHHHHHHHHHhhh-cCceecCchhhhhh-------c--------------cC----H---HH-HHHHH--
Confidence            58899999999999999999986 77777443  2222       1              11    1   11 12233  


Q ss_pred             ccCCCcEEEEeCCC---------------CCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCC--HHHHHHHHH
Q psy11031        305 KYTEADGIVIDGFP---------------REMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNS--VSAFRRRLE  364 (520)
Q Consensus       305 ~~~~~~G~ILDGFP---------------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~--~e~~~~Rl~  364 (520)
                      .......+|||.|-               .|..|...++..+.....|++|..++.+.+   |-|.|.-  -..+..-++
T Consensus        50 kladednviidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkdidsile  129 (164)
T d2axpa1          50 KLADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILE  129 (164)
T ss_dssp             HHTTCCSEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHH
T ss_pred             hhccccceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCCHHHHHH
Confidence            34466789999883               578899999998887778999999886543   2222221  111222334


Q ss_pred             HHHHHhHHHHHHhhhCCC-EEEEE-CCCCHHHHHHHHHH
Q psy11031        365 LFRERTLPMLRAMDVETR-LTIVD-GDTQLPQVREEFER  401 (520)
Q Consensus       365 ~f~~~~~~l~~~y~~~~~-l~~ID-a~~~~e~V~~~I~~  401 (520)
                      .|++.       +...|. -..-| |.-+.+++.+.|.-
T Consensus       130 lyrev-------msnaglhtyswdtgqwssdeiakdiif  161 (164)
T d2axpa1         130 LYREV-------MSNAGLHTYSWDTGQWSSDEIAKDIIF  161 (164)
T ss_dssp             HHHHH-------HHTCSSCEEEEETTTSCHHHHHHHHHH
T ss_pred             HHHHH-------HhcCCceeeecccCCcchHHhhhheeE
Confidence            44322       233332 12334 45677888777653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.48  E-value=0.0093  Score=51.31  Aligned_cols=26  Identities=12%  Similarity=0.135  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+|+|+|.||+||||+..+|...
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.44  E-value=0.032  Score=50.67  Aligned_cols=35  Identities=14%  Similarity=0.215  Sum_probs=27.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR  262 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr  262 (520)
                      ++|.|++|||||.+++.++.++    ....+++..++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   77 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH
Confidence            8999999999999998887653    2556777777766

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.038  Score=49.77  Aligned_cols=27  Identities=7%  Similarity=0.092  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..|.-+++.||||+||+|+|+.+++.+
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            345669999999999999999999865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.011  Score=51.63  Aligned_cols=26  Identities=15%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....+.|.|+||||||++|..++-..
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.07  E-value=0.014  Score=57.68  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      .+..|+++||.|+|||.+|+.||+.+ +...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~-~~~~   96 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL-DIPI   96 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT-TCCE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc-ccce
Confidence            35669999999999999999999875 5443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.04  E-value=0.012  Score=52.00  Aligned_cols=23  Identities=13%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ++|.|+|.|||||||+...|..+
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC
Confidence            57999999999999999999753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.00  E-value=0.014  Score=53.26  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      ....|+|.|++|+|||++++.+++.. +...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~-~~~~   57 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL-NLPY   57 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH-TCCE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC-CCCe
Confidence            34678999999999999999998865 5443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.93  E-value=0.015  Score=49.67  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+|+|+|.+||||||+..+|....
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            479999999999999999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.90  E-value=0.017  Score=49.68  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -.+|+|+|.|||||||++.+|...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.84  E-value=0.011  Score=57.15  Aligned_cols=28  Identities=25%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQ  254 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~  254 (520)
                      -++|.|+||+||||+|+.++.-++.+..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~~~~   57 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPEIEA   57 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCCEEE
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCCchh
Confidence            3899999999999999999987644433

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.012  Score=54.81  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      -...-++.|+||.||||||+.+.|+    |+...+.|+++-
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~----Gl~~p~sG~I~i   59 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIA----GLETITSGDLFI   59 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHH----TSSCCSEEEEEE
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHh----cCCCCCCCEEEE
Confidence            4557789999999999999999986    444555665543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.016  Score=48.35  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|+|+|+||+||||+..+|....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999998753

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.75  E-value=0.018  Score=51.37  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG  258 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g  258 (520)
                      .|+|+|+.+||||..|+.|+.......+|.++
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~~~~YiAT~   32 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAPQVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCSSEEEEECC
T ss_pred             CEEEECCCCccHHHHHHHHHhcCCCcEEEEcc
Confidence            37999999999999999999876455556553

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.72  E-value=0.021  Score=48.14  Aligned_cols=24  Identities=13%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -.+|+|+|.||+||||+..++...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.71  E-value=0.021  Score=49.24  Aligned_cols=27  Identities=7%  Similarity=0.278  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.+..+|+|+|.||+||||++.+|...
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.70  E-value=0.021  Score=50.69  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      ..=|++.|++|+||||+|-.|.++  |+..++=+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~--g~~lv~DD~   46 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR--GHRLIADDR   46 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT--TCEEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc--CCeEEecCe
Confidence            345999999999999999998875  888777653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.66  E-value=0.033  Score=47.20  Aligned_cols=131  Identities=10%  Similarity=0.065  Sum_probs=77.8

Q ss_pred             ccCcccCcHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEE
Q psy11031         12 LDFPSHRNPLKMFNLFVSEE----VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVIL   87 (520)
Q Consensus        12 ~~~~~h~s~G~~l~~~i~~G----~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~   87 (520)
                      ++++ ++++|+.++..-...    ...+..+..+.+.+.+.....    ..++.++++.+..-..       .....+|+
T Consensus        28 l~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~i~   95 (173)
T d1rkba_          28 SGLK-YINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMR----EGGVIVDYHGCDFFPE-------RWFHIVFV   95 (173)
T ss_dssp             HCCE-EEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHH----HCCEEEECSCCTTSCG-------GGCSEEEE
T ss_pred             HCCc-EEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhh----cCCcccchhHHHHHHH-------hcCCCcce
Confidence            4567 788888776532221    223445555666555554443    3567888888754321       24678999


Q ss_pred             EEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031         88 IAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK  159 (520)
Q Consensus        88 L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~  159 (520)
                      |+|+.+++.+|+. |+....+.   .-..+...+........++|.+. ..+.+|.+ +++++.+.|.++++.
T Consensus        96 l~~~~~~~~~Rl~~r~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~-~~i~~~~~-~~~~~~~~i~~Ii~~  163 (173)
T d1rkba_          96 LRTDTNVLYERLETRGYNEKKL---TDNIQCEIFQVLYEEATASYKEE-IVHQLPSN-KPEELENNVDQILKW  163 (173)
T ss_dssp             EECCHHHHHHHHHHTTCCHHHH---HHHHHHHHTTHHHHHHHHHSCGG-GEEEEECS-SHHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhcCCCcccc---cccchhhhHHHHHHHHHHHhhhc-cEEEECCC-CHHHHHHHHHHHHHH
Confidence            9999999999994 44320111   11233344444555666777654 46778876 567777666666553

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.02  Score=49.62  Aligned_cols=27  Identities=30%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +....+|+|+|.+|+|||++..++...
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhC
Confidence            344568999999999999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.60  E-value=0.022  Score=50.71  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK  259 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd  259 (520)
                      ..=|+|.|++|+||||+|-.|.++  |+..++=+.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~--G~~lvaDD~   47 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK--NHLFVGDDA   47 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT--TCEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc--CCceecCCe
Confidence            355899999999999999999875  888877653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.021  Score=50.52  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |.|+|+|.||+||||+..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.017  Score=51.95  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++|.|+|||||||+|-.++-.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988743

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.021  Score=53.20  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -.+..+|.|+|+.||||||+++.|..-+
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4457889999999999999999997654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.02  Score=55.86  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+..+|-|.|+|||||||+...|+..+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999998653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.13  E-value=0.023  Score=53.31  Aligned_cols=28  Identities=29%  Similarity=0.320  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|+.-+
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            4557789999999999999999997544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.023  Score=53.19  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .-.+..++.|+|+.||||||+++.|..-+
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            34567899999999999999999997654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.051  Score=48.79  Aligned_cols=100  Identities=11%  Similarity=0.101  Sum_probs=57.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE  300 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~  300 (520)
                      ..++.+++.|+|||||+|+|..+++...  ...|-   |++.     +.             ..|..+.-+.+.+++. .
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~---D~~~-----i~-------------~~~~~I~Id~IR~i~~-~   70 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKAS---DVLE-----ID-------------PEGENIGIDDIRTIKD-F   70 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTT---TEEE-----EC-------------CSSSCBCHHHHHHHHH-H
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCC---CEEE-----Ee-------------CCcCCCCHHHHHHHHH-H
Confidence            4578899999999999999999887420  12221   2222     10             1233344455555443 3


Q ss_pred             Hhcccc-CCCcEEEEeCCC-CCHHHHHHHHhhcCCCC-C-EEEecCCh
Q psy11031        301 MKKTKY-TEADGIVIDGFP-REMSQLIDFENKYQIHP-P-MILIDCSK  344 (520)
Q Consensus       301 l~~~~~-~~~~G~ILDGFP-rt~~Qae~l~~~~~~p~-~-VI~Ld~~~  344 (520)
                      +..... ...+-+|||..= .+.+.+.+|-+.+-.|+ . +|+|-|+.
T Consensus        71 ~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~  118 (198)
T d2gnoa2          71 LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR  118 (198)
T ss_dssp             HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred             HhhCcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCC
Confidence            441111 224578898853 56777777777776554 3 55555543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.016  Score=54.07  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      -...-++.|+|+.||||||+++.|+    |+...+.|+++-
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~----Gl~~p~sG~I~~   64 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVN----LLERPTEGSVLV   64 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHT----TSSCCSEEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHc----CCccccCCceEE
Confidence            3456789999999999999999985    555566666544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.05  E-value=0.025  Score=48.40  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.||+||||++.++...
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999988853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.99  E-value=0.026  Score=52.60  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|+.-+
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4557899999999999999999997644

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.88  E-value=0.027  Score=48.49  Aligned_cols=23  Identities=13%  Similarity=0.357  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||++.++...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            46999999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.84  E-value=0.035  Score=48.92  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      ..=|++.|++|+||||+|-.|.++  |+..++=+-+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~--g~~li~DD~~   48 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR--GHRLVADDNV   48 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT--TCEEEESSEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc--CCeEEeCCeE
Confidence            355999999999999999888876  8877765433

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.82  E-value=0.024  Score=51.43  Aligned_cols=25  Identities=12%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.-.++|.|+||||||++|..++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4668999999999999999988765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=92.81  E-value=0.038  Score=48.12  Aligned_cols=29  Identities=21%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT  253 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~  253 (520)
                      .+-+|++.|.-||||||+++.+++.+ |+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l-g~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc-ccc
Confidence            35689999999999999999999997 774

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.028  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.|++||||+..+|...
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.027  Score=49.23  Aligned_cols=23  Identities=13%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||++.++...
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            46999999999999999999854

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.69  E-value=0.028  Score=51.00  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ....++|.|+|||||||+|-.++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999988653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.69  E-value=0.029  Score=51.93  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=27.4

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL  261 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl  261 (520)
                      .-...-++.|+|+.||||||+.+.|+-    +...+.|+++
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~g----l~~p~sG~I~   63 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGC----LDKPTEGEVY   63 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTT----SSCCSEEEEE
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccC----CCCCCcceeE
Confidence            345678899999999999999998864    3334445443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.033  Score=50.29  Aligned_cols=26  Identities=8%  Similarity=0.132  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +....++|.|+||||||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999853

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.03  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||+++++...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.02  Score=49.23  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....++|.|+|.|++||||+..+|...
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            456789999999999999999988654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.035  Score=50.91  Aligned_cols=26  Identities=12%  Similarity=0.180  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .|..++|.||||+||||+|+.+++.+
T Consensus        33 ~~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          33 IHHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            35568999999999999999998875

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.54  E-value=0.03  Score=54.37  Aligned_cols=27  Identities=22%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..+|-|.|+||+||||+..+|.+.
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.031  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||+..++...
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.51  E-value=0.032  Score=47.77  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||+..++...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.032  Score=48.00  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .|+|+|.|||||||+.++|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=0.033  Score=47.95  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      .+|+|+|.+|+||||++.++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            4699999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.44  E-value=0.034  Score=47.52  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|++||||||+..++...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.034  Score=48.03  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.||+||||++.++...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            6999999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.034  Score=49.40  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.|+|+|+|||||||+..+|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.33  E-value=0.037  Score=52.67  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -.+..++.|+|+.||||||+.+.|+..+
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4567889999999999999999997644

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.32  E-value=0.033  Score=51.85  Aligned_cols=26  Identities=12%  Similarity=0.155  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...-++.|+||.||||||+.+.|+.-
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcC
Confidence            44678999999999999999999754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.27  E-value=0.034  Score=51.80  Aligned_cols=23  Identities=17%  Similarity=0.138  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -++.|+||.||||||+.+.|+.-
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCChHHHHHHHHHcC
Confidence            36779999999999999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.21  E-value=0.33  Score=39.90  Aligned_cols=104  Identities=11%  Similarity=-0.000  Sum_probs=63.7

Q ss_pred             cCcHHHHHHHHHHccCCCCCCCC-------HHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH---hcCCcCEEE
Q psy11031         17 HRNPLKMFNLFVSEEVKDFSFLS-------SKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD---KIKTINGVI   86 (520)
Q Consensus        17 h~s~G~~l~~~i~~G~~~g~lVP-------delv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~---~~~~pd~VI   86 (520)
                      |++.++..+.........+..-.       ..+..+++...+........+|+|+-..+......+.+   ......++|
T Consensus        31 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i  110 (152)
T d1ly1a_          31 NINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK  110 (152)
T ss_dssp             EECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcccccccCCHHHHHHHHHhhhhhccchhhh
Confidence            77878776665543322121222       23344555555544345667999998888776654443   334667899


Q ss_pred             EEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHh
Q psy11031         87 LIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQ  122 (520)
Q Consensus        87 ~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~  122 (520)
                      +|++|.+++.+|+. |+.  .....+.++++++.|++
T Consensus       111 ~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~~~~~  145 (152)
T d1ly1a_         111 VFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMRE  145 (152)
T ss_dssp             ECCCCHHHHHHHHTTCGG--GCCCHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHccCC--CCCCHHHHHHHHHHHHh
Confidence            99999999999984 432  12246667666666654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.13  E-value=0.037  Score=53.46  Aligned_cols=39  Identities=18%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHH
Q psy11031        223 NTPL-VVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLL  261 (520)
Q Consensus       223 ~~p~-~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLl  261 (520)
                      .+|. .++++||+|+|||.+|+.||+.++    .+..++++++.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~   93 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   93 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            3454 678889999999999999998642    33455554443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.04  Score=47.66  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||+..++...
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36999999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.042  Score=47.03  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+|||++..++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.97  E-value=0.029  Score=50.58  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+.-
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            345678999999999999999999753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.04  Score=47.39  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||++.++...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.043  Score=47.36  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+||||++.++...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999988753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.89  E-value=0.045  Score=50.85  Aligned_cols=27  Identities=11%  Similarity=0.112  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -...-++.|+||.||||||+.+.|+.-
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            345678999999999999999998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.88  E-value=0.042  Score=47.83  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||++.++...
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36999999999999999998863

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.038  Score=47.31  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+||||+..++...
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            467999999999999999998753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.045  Score=46.81  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||++.++...
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.04  Score=48.04  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +..+|+|+|.+|+|||++..++...
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            3568999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.74  E-value=0.046  Score=46.49  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||++.++...
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999999853

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.67  E-value=0.033  Score=51.49  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      -...-++.|+||.||||||+.+.|+.    +...+.|+++-
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~G----l~~p~sG~I~~   59 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAG----FHVPDSGRILL   59 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHT----SSCCSEEEEEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhc----CcCCCCCEEEE
Confidence            34577899999999999999999974    44445555543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.64  E-value=0.028  Score=52.79  Aligned_cols=28  Identities=25%  Similarity=0.235  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -....++.|+|+.||||||+++.|..-+
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            4567899999999999999999886543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.047  Score=46.78  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+||||++.++...
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999988753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=0.046  Score=48.21  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||++.++...
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            46999999999999999998864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.54  E-value=0.063  Score=46.45  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ....+|.|+|.+|+||||+..+|...
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34678999999999999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.53  E-value=0.04  Score=47.57  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .|+|+|.||+||||+...|..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.051  Score=46.51  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+|||++..++...
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998763

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.43  E-value=0.047  Score=48.76  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...+++|.|+||||||++|..++-..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.38  E-value=0.049  Score=47.12  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..|.|+|.+|+||||+..+|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.054  Score=46.47  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+||||+..++...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6999999999999999999853

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.054  Score=46.05  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+|||++..++...
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998853

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.055  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+|||+++.++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.054  Score=46.25  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||+..++...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.20  E-value=0.052  Score=50.93  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        221 ERNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       221 ~~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      .-...-++.|+|+.||||||+++.|+-
T Consensus        24 ~i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          24 QARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            345678899999999999999999864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.055  Score=46.43  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      +|+|+|.+|+|||+++.++....
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            58999999999999999987653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.11  E-value=0.051  Score=48.31  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVL  246 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La  246 (520)
                      ....+.|.|+||||||++|..++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            46789999999999999997654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.059  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+|||+++.++...
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36999999999999999988663

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.94  E-value=0.062  Score=46.18  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||++.++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.94  E-value=0.047  Score=46.99  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+-.+|+|+|.||+||||+..++....
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            345789999999999999999987543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.21  Score=44.87  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=41.9

Q ss_pred             CcCEEEEEEcCHHHHHHHhh-hCccCC-ccchHHHHHHHHHHHhcc----chH--HHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQID-YGAKLG-HVILSLARMELANFYQNV----TPV--TDFFDQRGMLIAVNGERNPVEVYAD  152 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~-r~d~e~i~~Rl~~Y~~~t----~pv--i~~Y~~~~~l~~Ida~~~~eeV~~~  152 (520)
                      .||++|+|+++-+...+|+. |+.... ..+.+ ..+++...++..    ...  ...+. ...++.|||+++.+++...
T Consensus       149 ~pdl~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~-yl~~l~~~Y~~~~~~~~~~~~~~~~~-~~~~~iID~~~d~~~~~~~  226 (241)
T d2ocpa1         149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELA-YLEQLHGQHEAWLIHKTTKLHFEALM-NIPVLVLDVNDDFSEEVTK  226 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHH-HHHHHHHHHHHHHTSCCSCCCCTTGG-GCCEEEEECCSCTTTCHHH
T ss_pred             ccceEEEecCCHHHHHHHHhcccchhhhcCCHH-HHHHHHHHHHHHHHhhhhhhhHhhcC-CCCEEEEECCCchhhhHHH
Confidence            78999999999999999994 443211 11222 233443333221    100  01111 2348999999986666555


Q ss_pred             HHHHH
Q psy11031        153 FRTAV  157 (520)
Q Consensus       153 i~~~l  157 (520)
                      +.+++
T Consensus       227 ~~~i~  231 (241)
T d2ocpa1         227 QEDLM  231 (241)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=0.063  Score=45.86  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||+..++...
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.066  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.73  E-value=0.037  Score=51.55  Aligned_cols=26  Identities=12%  Similarity=0.165  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      -...-++.|+||.||||||+.+.|+.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            34567899999999999999999975

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.63  E-value=0.069  Score=45.70  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.+|+|+|.+|+|||++..++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            357999999999999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.071  Score=46.08  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +.+|+|+|.+|+||||+..++...
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            357999999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.50  E-value=0.054  Score=46.96  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+-.+|+|+|.+||||||+..+|...
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            44678999999999999999988543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.072  Score=45.93  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+|||+++.++...
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36999999999999999999754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.36  E-value=0.045  Score=47.22  Aligned_cols=22  Identities=14%  Similarity=0.320  Sum_probs=9.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      -+|+|+|.+||||||+..+|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999988764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.28  E-value=0.071  Score=49.60  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+..|+|+|.|||||||++..|..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            45678999999999999999999764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.089  Score=47.27  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++++|+||.|||++++.||++
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            345899999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.06  E-value=0.066  Score=49.64  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -....++.|+||.||||||+.+.|+--
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            445788999999999999999998643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.089  Score=44.88  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+|||+++.++...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.085  Score=45.11  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|.|+|.|++||||+..+|..+
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.58  E-value=0.033  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|.|+|.|++||||+..+|..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.56  E-value=0.085  Score=49.24  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR  262 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr  262 (520)
                      -...-++.|+||.||||||+++.|+    |+...+.|+++-
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~----Gl~~p~~G~I~~   63 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVIT----GFLKADEGRVYF   63 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHT----TSSCCSEEEEEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHH----CCCcCCCcEEEE
Confidence            3456789999999999999999986    444455555543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=89.35  E-value=0.098  Score=50.55  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGK  259 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gd  259 (520)
                      ..|+|.|++||||||+.+.|....+ ....+++.+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            4599999999999999999998653 233444433

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=0.11  Score=49.02  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++++|+||+|||++++.|+++
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            456889999999999999999975

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.26  E-value=0.11  Score=45.26  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKV  245 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~L  245 (520)
                      ..+|+|+|.+||||||+..++
T Consensus         2 ~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            357999999999999999998

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.22  E-value=0.096  Score=49.14  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|.|.|+.|.||||+|+.+.++
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.059  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      +|+|+|.+|+|||++..++...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999887653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.1  Score=45.42  Aligned_cols=24  Identities=25%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+|+|+|.+|+|||++..++...
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhC
Confidence            457999999999999999998764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=88.99  E-value=0.1  Score=48.18  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=26.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL  260 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL  260 (520)
                      -....++-|+||.||||||+.+.|+.    +...+.|++
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G----~~~p~~G~i   59 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIIST----LIKPSSGIV   59 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTT----SSCCSEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc----CCCCCCCEE
Confidence            34567899999999999999999874    444444444

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.89  E-value=0.072  Score=50.19  Aligned_cols=15  Identities=27%  Similarity=0.614  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChhHHH
Q psy11031        228 VWVVGGPGSSKSEMC  242 (520)
Q Consensus       228 I~vlG~PGSGKsT~a  242 (520)
                      ++|.|+|||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.86  E-value=0.11  Score=44.99  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+|||++..++.+.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.74  E-value=0.087  Score=49.00  Aligned_cols=15  Identities=33%  Similarity=0.594  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChhHHH
Q psy11031        228 VWVVGGPGSSKSEMC  242 (520)
Q Consensus       228 I~vlG~PGSGKsT~a  242 (520)
                      ++|.|+|||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.72  E-value=0.12  Score=46.89  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      -|+++|.|..||||||+.++|.+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            4789999999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.43  E-value=0.13  Score=44.13  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -+|+|+|.+|+||||+..++...
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.12  Score=45.06  Aligned_cols=23  Identities=17%  Similarity=0.166  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+|||++..++.+.
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999988764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.16  E-value=0.22  Score=40.75  Aligned_cols=26  Identities=19%  Similarity=0.105  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .-.+.+|.+|.|||||+++-.+..+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHc
Confidence            34678999999999999997666554

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.84  E-value=0.15  Score=46.13  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ++|+|.|+|-|.|||||+...|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            4577999999999999999998754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=87.84  E-value=0.12  Score=46.66  Aligned_cols=32  Identities=16%  Similarity=0.062  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS  256 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is  256 (520)
                      +-..|++.|||++|||++|..|.+-+ +-..++
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l-~G~vis   83 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI-QGAVIS   83 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH-TCEECC
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh-CCEEEe
Confidence            34789999999999999999999876 544444

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=87.82  E-value=0.096  Score=48.11  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        222 RNTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       222 ~~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      -...-++.|+|+.||||||+.+.|+..
T Consensus        22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          22 VRAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            345788999999999999999999753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.74  E-value=0.099  Score=45.22  Aligned_cols=22  Identities=32%  Similarity=0.256  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy11031        227 VVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       227 ~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .|.|+|+|++||||+..+|...
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=87.56  E-value=1.4  Score=36.14  Aligned_cols=93  Identities=9%  Similarity=-0.119  Sum_probs=54.4

Q ss_pred             CCCcEEEeCCCCCHHhHHHHHH---h-cCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHH
Q psy11031         56 AAKAFLISGYPRNMRDVVEYSD---K-IKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDF  130 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~~~~---~-~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~  130 (520)
                      ...++|+|++.........+..   . ...+..+++|.|+.+++.+|+ .|+.. .....+ ...++..|..       +
T Consensus        72 ~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-~~~~~~-~~~~~~~~~~-------~  142 (176)
T d2bdta1          72 AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD-EQMGER-CLELVEEFES-------K  142 (176)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----CGG-GGHHHHHHHH-------T
T ss_pred             cCCCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCc-hhhhHH-HHHHHHHHHh-------C
Confidence            4688999999888776532221   1 234557899999999999999 44322 111111 1122222221       1


Q ss_pred             hhhCCcEEEEeCC-CChHHHHHHHHHHHHH
Q psy11031        131 FDQRGMLIAVNGE-RNPVEVYADFRTAVLK  159 (520)
Q Consensus       131 Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~  159 (520)
                      +...  .+.||.+ .++++|.+.|..++..
T Consensus       143 ~~~~--~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         143 GIDE--RYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             TCCT--TSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             CCCC--eEEEECCCCCHHHHHHHHHHHHhc
Confidence            1122  2335554 6899999999888864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=87.49  E-value=0.52  Score=39.85  Aligned_cols=65  Identities=15%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             CcCEEEEEEcCHHHHHHHhhhCccCCcc---c----hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHH
Q psy11031         81 TINGVILIAWRQSLLERQIDYGAKLGHV---I----LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYAD  152 (520)
Q Consensus        81 ~pd~VI~L~~pd~~l~~Rl~rg~~~~r~---d----~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~  152 (520)
                      ....+|+|++|.+++.+|+..+....|.   +    .+.+..|...|           .+..- +.||.+ ++++++.++
T Consensus        88 ~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y-----------~~~ad-~~Idt~~~s~eei~~~  155 (161)
T d1viaa_          88 KAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKY-----------EQKAN-FILNIENKNIDELLSE  155 (161)
T ss_dssp             GGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHH-----------HHHCS-EEEECTTCCHHHHHHH
T ss_pred             hCCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHH-----------HhhCC-EEEECCCCCHHHHHHH
Confidence            4568999999999999999533322342   2    22233343333           22211 357865 799999999


Q ss_pred             HHHHH
Q psy11031        153 FRTAV  157 (520)
Q Consensus       153 i~~~l  157 (520)
                      |.++|
T Consensus       156 I~~~i  160 (161)
T d1viaa_         156 IKKVI  160 (161)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.33  E-value=0.085  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |.|+|.|++||||+..+|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999999754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.04  E-value=0.17  Score=43.85  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|.+|+||||+..++...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            67999999999999999988764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.01  E-value=0.18  Score=46.48  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      +.-.++|.|+||+||||++..++-
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999998887764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.92  E-value=0.15  Score=49.79  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=17.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHH
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKV  245 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~L  245 (520)
                      .++.+|.||||+||||....+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            368999999999999887543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.29  E-value=0.19  Score=45.28  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      ..+|+|+|..||||||+.+++..
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999998864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.17  E-value=0.17  Score=44.38  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=19.8

Q ss_pred             eEEEEEcC-CCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGG-PGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~-PGSGKsT~a~~La~k  248 (520)
                      +++||.|- +|+||||+|-.|+..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~a   25 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQA   25 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            78999997 699999998877764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.12  E-value=0.73  Score=42.67  Aligned_cols=27  Identities=15%  Similarity=0.331  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ..+.+|.|+|.|.+||||+...|..+.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            356789999999999999999998753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.97  E-value=2  Score=36.52  Aligned_cols=85  Identities=14%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             cEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcE
Q psy11031         59 AFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGML  137 (520)
Q Consensus        59 G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l  137 (520)
                      -.++|+-+.-..+.   ......+..|+++.++.++|.+|| .|    ++.+++.+++|+..+..+.    .++..-. .
T Consensus        96 ~~i~~~~~~g~~~l---~~~~~~~~~i~i~~~s~e~L~~RL~~R----g~~~~e~I~~Rl~~~~~e~----~~~~~fD-~  163 (182)
T d1znwa1          96 PVLIEVDLAGARAI---KKTMPEAVTVFLAPPSWQDLQARLIGR----GTETADVIQRRLDTARIEL----AAQGDFD-K  163 (182)
T ss_dssp             CEEEECCHHHHHHH---HHHCTTSEEEEEECSCHHHHHHHHHTT----SCSCHHHHHHHHHHHHHHH----HGGGGSS-E
T ss_pred             ccccccccchhhhh---hhcCcceeEEeeecccHHHHHHHhhhc----CcchHHHHHHHHHHHHHHH----hhHhcCC-E
Confidence            34555554433333   223334545555556678999999 45    4457889999999887553    3333222 2


Q ss_pred             EEEeCCCChHHHHHHHHHHH
Q psy11031        138 IAVNGERNPVEVYADFRTAV  157 (520)
Q Consensus       138 ~~Ida~~~~eeV~~~i~~~l  157 (520)
                      +-+|  .+.++.++++.++|
T Consensus       164 vI~N--ddle~a~~~l~~iI  181 (182)
T d1znwa1         164 VVVN--RRLESACAELVSLL  181 (182)
T ss_dssp             EEEC--SSHHHHHHHHHHHH
T ss_pred             EEEC--cCHHHHHHHHHHHh
Confidence            2233  47889888888765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.91  E-value=0.19  Score=46.37  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..|++||+.|.-|.||||+|..||..
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~   31 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIR   31 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHH
Confidence            34889999999999999977666553

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.72  E-value=0.25  Score=46.22  Aligned_cols=29  Identities=10%  Similarity=0.421  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW  252 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~  252 (520)
                      ++-..+++.|||++|||+++..|+..+ |-
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS-SC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh-cc
Confidence            345679999999999999999999886 54

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=85.63  E-value=0.2  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..+.+|.|+||+||||+|-.|+-.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            357889999999999999887753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.2  Score=46.88  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ...++.|.|+|||||||+|-.++..
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHH
Confidence            4578999999999999999888764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.22  E-value=0.2  Score=41.40  Aligned_cols=27  Identities=7%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      ...-.||+.|-.||||+|+|..|..++
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999987765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.31  E-value=0.27  Score=42.46  Aligned_cols=23  Identities=9%  Similarity=0.150  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..|.|+|.|.+||||+..+|.+.
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHh
Confidence            46999999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.19  E-value=0.27  Score=42.18  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .+|+|+|..|+|||++..++....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.86  E-value=0.26  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy11031        228 VWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       228 I~vlG~PGSGKsT~a~~La~k  248 (520)
                      |+|.|++|+||+++|+.|.+.
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHh
Confidence            899999999999999999753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=83.78  E-value=0.27  Score=48.64  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQDY  249 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~k~  249 (520)
                      .--.|+|.||.||||||....+.+..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhh
Confidence            34679999999999999988877653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.09  E-value=0.72  Score=39.89  Aligned_cols=88  Identities=10%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031         58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM  136 (520)
Q Consensus        58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~  136 (520)
                      .-.|+|+.|.-..++..+.  ...+..|+++..+.+++.+|| .|    ++.+++.+.+||..+.....     +...+.
T Consensus        93 ~~~i~~~~~~~~~~lk~~~--~~~~~~i~~~~~~~e~l~~RL~~R----g~~~~~~I~~Rl~~~~~e~~-----~~~~~~  161 (186)
T d1gkya_          93 KTCILDIDMQGVKSVKAIP--ELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQAELA-----YAETGA  161 (186)
T ss_dssp             SEEEEECCHHHHHHHHTCG--GGCCEEEEEECSCHHHHHHHHHHH----SCSCHHHHHHHHHHHHHHHH-----HHTTTC
T ss_pred             CeEEecchHHHHHHHHHhh--cccceEEEecCCcHHHHHHHHHhh----ccchhHHHHHHHHHHHHHHH-----hhhhcC
Confidence            4568999887666663321  234556777777889999999 56    44567889999988775432     111111


Q ss_pred             --EEEEeCCCChHHHHHHHHHHHH
Q psy11031        137 --LIAVNGERNPVEVYADFRTAVL  158 (520)
Q Consensus       137 --l~~Ida~~~~eeV~~~i~~~l~  158 (520)
                        ++.+|  .+.++.+++|.++|.
T Consensus       162 fd~vI~N--~dle~a~~~l~~iI~  183 (186)
T d1gkya_         162 HDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             SSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             CCEEEEC--cCHHHHHHHHHHHHH
Confidence              33344  478888988888774

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.73  E-value=0.25  Score=39.68  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=16.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHH
Q psy11031        223 NTPLVVWVVGGPGSSKSEMCQ  243 (520)
Q Consensus       223 ~~p~~I~vlG~PGSGKsT~a~  243 (520)
                      .+....+|.+++|||||+++-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            345778899999999997763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.23  E-value=1.3  Score=36.71  Aligned_cols=94  Identities=7%  Similarity=-0.034  Sum_probs=58.9

Q ss_pred             CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhC
Q psy11031         56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQR  134 (520)
Q Consensus        56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~  134 (520)
                      ....+|+||..+..... .+.. ......+++|.|+.+++.+|+. |+.. ...+.+.+......|..    .-.++.  
T Consensus        77 ~~~~vi~~~~~~~~~~~-~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~----~~~~~~--  147 (176)
T d1zp6a1          77 EGYFVILDGVVRPDWLP-AFTA-LARPLHYIVLRTTAAEAIERCLDRGGD-SLSDPLVVADLHSQFAD----LGAFEH--  147 (176)
T ss_dssp             TSCEEEECSCCCTTTTH-HHHT-TCSCEEEEEEECCHHHHHHHHHTTCTT-SCCCHHHHHHHHHHTTC----CGGGGG--
T ss_pred             cCCCeEecccccHHHHH-HHHh-cccccccccCCCCHHHHHHHHHhCCCc-cccchhhHHHHHHHHhh----cccccC--
Confidence            46789999999866555 3433 3456688999999999999994 4432 22334433332222221    112222  


Q ss_pred             CcEEEEe-CCCChHHHHHHHHHHHHHHh
Q psy11031        135 GMLIAVN-GERNPVEVYADFRTAVLKIL  161 (520)
Q Consensus       135 ~~l~~Id-a~~~~eeV~~~i~~~l~~~~  161 (520)
                         +.|| .+.+++++.++|.+.|+...
T Consensus       148 ---~~idt~~~~~ee~~~~I~~~l~~~~  172 (176)
T d1zp6a1         148 ---HVLPVSGKDTDQALQSAINALQSGR  172 (176)
T ss_dssp             ---GEEECTTCCTTTTTTTTHHHHHHTT
T ss_pred             ---EEEECCCCCHHHHHHHHHHHHHcCC
Confidence               2244 66789999999999987644

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.49  E-value=0.42  Score=40.74  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+|+|+|..|+|||++..++...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            47999999999999999998754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.29  E-value=0.3  Score=48.16  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHhh
Q psy11031        226 LVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       226 ~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      ..++++|+||.|||++++-||++
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            34678899999999999877763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.17  E-value=0.48  Score=43.19  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031        225 PLVVWVVGGPGSSKSEMCQKVLQD  248 (520)
Q Consensus       225 p~~I~vlG~PGSGKsT~a~~La~k  248 (520)
                      .+..+++|.+|.||||+...|...
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcch
Confidence            457899999999999999998644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.01  E-value=0.45  Score=46.90  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031        224 TPLVVWVVGGPGSSKSEMCQKVLQ  247 (520)
Q Consensus       224 ~p~~I~vlG~PGSGKsT~a~~La~  247 (520)
                      .|..|.|+|.||+||||+...|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            367899999999999999999864