Psyllid ID: psy11035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK
Secondary Structure (PSIPRED)
cccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccEEcccccHHHHHHccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccEEEEEEEEccEEEEEcEEEcEEcccccccccHHHHHHcccccEEEcHHHHHHccccc
Coil and Loop (DISEMBL)
mstqvrplqfkvlaecpvsnartsvmtlphhdvetpvfmpvgtkgtikgilpqqletldcqiilgntyhlglkpvek
Flexible Loop (DISEMBL)
mstqvrplqfkvlaecpvsnartsvmtlphhdvetpvFMPVGTKGTIKGILPQQLETLDCQIILgntyhlglkpvek
Low Complexity Region (SEG)
MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK
Disordered region (IsUnstruct)
*******LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGL*****
Disordered Region (DISOPRED)
******P***KVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP***
Disordered Region (DISEMBL)
MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK
Disordered Region (DISPRO)
****VRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q9VPY8	427	Probable queuine tRNA-rib	yes	N/A	0.935	0.168	0.652	1e-22
Q7SYK1	400	Queuine tRNA-ribosyltrans	yes	N/A	0.883	0.17	0.676	2e-22
O94460	404	Probable queuine tRNA-rib	yes	N/A	0.961	0.183	0.567	9e-20
Q4QQY7	396	Queuine tRNA-ribosyltrans	N/A	N/A	0.948	0.184	0.561	4e-19
Q28HC6	396	Queuine tRNA-ribosyltrans	yes	N/A	0.922	0.179	0.591	8e-19
Q4QR99	403	Queuine tRNA-ribosyltrans	yes	N/A	0.948	0.181	0.547	2e-17
Q9JMA2	403	Queuine tRNA-ribosyltrans	yes	N/A	0.948	0.181	0.547	3e-17
Q9BXR0	403	Queuine tRNA-ribosyltrans	yes	N/A	0.948	0.181	0.547	3e-17
A1WFH2	390	Queuine tRNA-ribosyltrans	yes	N/A	0.870	0.171	0.552	5e-16
A1TVN0	390	Queuine tRNA-ribosyltrans	yes	N/A	0.870	0.171	0.537	7e-16

>sp|Q9VPY8|TGT_DROME Probable queuine tRNA-ribosyltransferase OS=Drosophila melanogaster GN=Tgt PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 59/72 (81%)

Query: 3  TQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQI 62
          + + PL +KV+AEC VS AR  +MTL H +V TPVFMPVGT+GT+KGI+P QL  L+CQI
Sbjct: 4  SHIPPLTYKVVAECSVSKARAGLMTLRHSEVNTPVFMPVGTQGTLKGIVPDQLIELNCQI 63

Query: 63 ILGNTYHLGLKP 74
          +LGNTYHLGL+P
Sbjct: 64 LLGNTYHLGLRP 75

Interacts with a second catalytic subunit to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 9

>sp|Q7SYK1|TGT_DANRE Queuine tRNA-ribosyltransferase OS=Danio rerio GN=qtrt1 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query: 7  PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGN 66
          PL  +++AECPVS AR   +TLPH  V TPVFMPVGT+GT+KGI   QLE LDCQI LGN
Sbjct: 12 PLALRIVAECPVSKARACSLTLPHCAVNTPVFMPVGTQGTMKGITADQLEDLDCQICLGN 71

Query: 67 TYHLGLKP 74
          TYHLG++P
Sbjct: 72 TYHLGMRP 79

Interacts with qtrtd1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|O94460|TGT_SCHPO Probable queuine tRNA-ribosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.19c PE=3 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 57/74 (77%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          M++    LQFKV+A C  + AR + + LPH  VE+PVFMPVGT+ ++KG+LP+QL+ L C
Sbjct: 1  MASSFPALQFKVVARCSTTRARVTDIQLPHGLVESPVFMPVGTQASLKGVLPEQLDALGC 60

Query: 61 QIILGNTYHLGLKP 74
          +I+L NTYHLGLKP
Sbjct: 61 KIMLNNTYHLGLKP 74

Exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|Q4QQY7|TGT_XENLA Queuine tRNA-ribosyltransferase OS=Xenopus laevis GN=qtrt1 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%)

Query: 2  STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
          +T+   L  +VLAECPV+ AR   + +PH  V+TPVFMPVGT+GT+KG+   QL  L C+
Sbjct: 3  ATKSHALVHRVLAECPVTKARACELQMPHGQVKTPVFMPVGTQGTMKGVTADQLRNLGCE 62

Query: 62 IILGNTYHLGLKP 74
          I LGNTYHLG++P
Sbjct: 63 ICLGNTYHLGMRP 75

Interacts with qtrtd1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|Q28HC6|TGT_XENTR Queuine tRNA-ribosyltransferase OS=Xenopus tropicalis GN=qtrt1 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 4  QVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQII 63
          Q   L  +VLAECPV+ AR     LPH  V+TPVFMPVGT+GT+KG+   QL  L C+I 
Sbjct: 5  QCHALVHRVLAECPVTKARACEFRLPHGPVKTPVFMPVGTQGTMKGVTADQLRNLGCEIC 64

Query: 64 LGNTYHLGLKP 74
          LGNTYHLG++P
Sbjct: 65 LGNTYHLGMRP 75

Interacts with qtrtd1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|Q4QR99|TGT_RAT Queuine tRNA-ribosyltransferase OS=Rattus norvegicus GN=Qtrt1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 52/73 (71%)

Query: 2  STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
          S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL++L C+
Sbjct: 9  SLESAPRIMRLVAECSRSRARAGELRLPHGTVATPVFMPVGTQATMKGITAEQLDSLGCR 68

Query: 62 IILGNTYHLGLKP 74
          I LGNTYHLGL+P
Sbjct: 69 ICLGNTYHLGLRP 81

Interacts with QTRTD1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|Q9JMA2|TGT_MOUSE Queuine tRNA-ribosyltransferase OS=Mus musculus GN=Qtrt1 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 52/73 (71%)

Query: 2  STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
          S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL++L C+
Sbjct: 9  SLESAPRIMRLVAECSRSGARAGELRLPHGTVATPVFMPVGTQATMKGITTEQLDSLGCR 68

Query: 62 IILGNTYHLGLKP 74
          I LGNTYHLGL+P
Sbjct: 69 ICLGNTYHLGLRP 81

Interacts with QTRTD1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|Q9BXR0|TGT_HUMAN Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query: 2  STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
          S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL+ L C+
Sbjct: 9  SLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCR 68

Query: 62 IILGNTYHLGLKP 74
          I LGNTYHLGL+P
Sbjct: 69 ICLGNTYHLGLRP 81

Interacts with QTRTD1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|A1WFH2|TGT_VEREI Queuine tRNA-ribosyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=tgt PE=3 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
          LQF +L   P S+AR   +TL H  V+TP+FMPVGT G++KG+LP+ L  +  QIILGNT
Sbjct: 2  LQFDLLTTDPASHARRGRLTLRHGQVQTPIFMPVGTHGSVKGVLPRSLHEMGAQIILGNT 61

Query: 68 YHLGLKP 74
          +HL L+P
Sbjct: 62 FHLWLRP 68

Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

>sp|A1TVN0|TGT_ACIAC Queuine tRNA-ribosyltransferase OS=Acidovorax citrulli (strain AAC00-1) GN=tgt PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 50/67 (74%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
          LQF++LA  P S+AR   +TL H  V+TP+FMPVGT GT+KG++P+ L  +  QIIL NT
Sbjct: 2  LQFELLATDPASHARRGTLTLNHGVVQTPIFMPVGTYGTVKGVMPRSLHEMGAQIILSNT 61

Query: 68 YHLGLKP 74
          +HL ++P
Sbjct: 62 FHLWMRP 68

Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).

Acidovorax citrulli (strain AAC00-1) (taxid: 397945)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
345479506	434	PREDICTED: probable queuine tRNA-ribosyl	0.883	0.156	0.764	1e-23
156354290	121	predicted protein [Nematostella vectensi	0.935	0.595	0.680	5e-23
195386022	406	GJ16961 [Drosophila virilis] gi|19414816	0.948	0.179	0.671	6e-23
193676302	392	PREDICTED: probable queuine tRNA-ribosyl	0.896	0.176	0.695	6e-23
322779457	407	hypothetical protein SINV_04875 [Solenop	0.961	0.181	0.689	7e-23
156354288	401	predicted protein [Nematostella vectensi	0.935	0.179	0.680	7e-23
242019374	404	queuine tRNA-ribosyltransferase, putativ	0.922	0.175	0.661	7e-23
195114700	406	GI14537 [Drosophila mojavensis] gi|19391	0.948	0.179	0.684	2e-22
307211141	394	Probable queuine tRNA-ribosyltransferase	0.961	0.187	0.662	3e-22
156333929	214	hypothetical protein NEMVEDRAFT_v1g22417	0.935	0.336	0.652	3e-22

>gi|345479506|ref|XP_001607235.2| PREDICTED: probable queuine tRNA-ribosyltransferase-like [Nasonia vitripennis]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 58/68 (85%)

Query: 7   PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGN 66
           PL F+V AECPVS ART  M L HH V+TPVFMPVGT+GT+KG+LPQQLE LDCQIILGN
Sbjct: 47  PLTFEVRAECPVSKARTGYMQLVHHHVDTPVFMPVGTQGTLKGLLPQQLEDLDCQIILGN 106

Query: 67  TYHLGLKP 74
           TYHLG +P
Sbjct: 107 TYHLGNRP 114

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156354290|ref|XP_001623331.1| predicted protein [Nematostella vectensis] gi|156210018|gb|EDO31231.1| predicted protein [Nematostella vectensis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 59/72 (81%)

Query: 3  TQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQI 62
          T+   L FK+LAEC  + ART ++TLPHH VETPVFMPVGT+GT+KG+   QLE LDCQI
Sbjct: 7  TRESALTFKILAECSTTKARTGILTLPHHRVETPVFMPVGTQGTMKGLTCSQLEDLDCQI 66

Query: 63 ILGNTYHLGLKP 74
          ILGNTYHLG++P
Sbjct: 67 ILGNTYHLGMRP 78

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195386022|ref|XP_002051703.1| GJ16961 [Drosophila virilis] gi|194148160|gb|EDW63858.1| GJ16961 [Drosophila virilis]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/73 (67%), Positives = 61/73 (83%)

Query: 2  STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
          S+++ PL +KV+AEC VS AR  +MTL H +V TPVFMPVGT+GT+KG+LP QL  LDCQ
Sbjct: 3  SSKIPPLTYKVVAECSVSKARAGLMTLRHSEVRTPVFMPVGTQGTLKGVLPDQLIELDCQ 62

Query: 62 IILGNTYHLGLKP 74
          I+LGNTYHLGL+P
Sbjct: 63 IVLGNTYHLGLRP 75

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193676302|ref|XP_001950376.1| PREDICTED: probable queuine tRNA-ribosyltransferase-like isoform 1 [Acyrthosiphon pisum] gi|328701293|ref|XP_003241555.1| PREDICTED: probable queuine tRNA-ribosyltransferase-like isoform 2 [Acyrthosiphon pisum]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 59/69 (85%)

Query: 6  RPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILG 65
          + LQF V+A C  S ARTS+M LPH+ VETPVFMPVGTKG++K +LP+QLE ++CQIILG
Sbjct: 3  KALQFDVIASCTTSKARTSLMKLPHYTVETPVFMPVGTKGSVKSVLPEQLEDMNCQIILG 62

Query: 66 NTYHLGLKP 74
          NTYHLGL+P
Sbjct: 63 NTYHLGLRP 71

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779457|gb|EFZ09649.1| hypothetical protein SINV_04875 [Solenopsis invicta]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 59/74 (79%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          M+ Q  PL F+V  EC  + ART  MTL HH V+TPVFMPVGT+GT+KG+LPQQLE LDC
Sbjct: 14 MANQKAPLIFEVFTECETTKARTGRMTLVHHHVDTPVFMPVGTQGTLKGLLPQQLEQLDC 73

Query: 61 QIILGNTYHLGLKP 74
          QIILGNTYHLG +P
Sbjct: 74 QIILGNTYHLGNRP 87

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156354288|ref|XP_001623330.1| predicted protein [Nematostella vectensis] gi|156210017|gb|EDO31230.1| predicted protein [Nematostella vectensis]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 59/72 (81%)

Query: 3  TQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQI 62
          T+   L FK+LAEC  + ART ++TLPHH VETPVFMPVGT+GT+KG+   QLE LDCQI
Sbjct: 7  TRESALTFKILAECSTTKARTGILTLPHHRVETPVFMPVGTQGTMKGLTCSQLEDLDCQI 66

Query: 63 ILGNTYHLGLKP 74
          ILGNTYHLG++P
Sbjct: 67 ILGNTYHLGMRP 78

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|242019374|ref|XP_002430136.1| queuine tRNA-ribosyltransferase, putative [Pediculus humanus corporis] gi|212515227|gb|EEB17398.1| queuine tRNA-ribosyltransferase, putative [Pediculus humanus corporis]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 60/71 (84%)

Query: 7  PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGN 66
          PL F+++AEC  + AR  ++ LPH DV+TPVFMPVGT+GT+KG+LP+QLETLDC+IILGN
Sbjct: 5  PLSFEIIAECKTTKARVGILKLPHADVDTPVFMPVGTQGTVKGLLPEQLETLDCKIILGN 64

Query: 67 TYHLGLKPVEK 77
          TYHLG +P  K
Sbjct: 65 TYHLGTRPGAK 75

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114700|ref|XP_002001905.1| GI14537 [Drosophila mojavensis] gi|193912480|gb|EDW11347.1| GI14537 [Drosophila mojavensis]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 61/73 (83%)

Query: 2  STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
          S+++ PL +KV+AEC VS AR  +MTL H +V TPVFMPVGT+GT+KGILP QL  LDCQ
Sbjct: 3  SSKLPPLTYKVVAECSVSKARAGLMTLRHSEVRTPVFMPVGTQGTMKGILPDQLIELDCQ 62

Query: 62 IILGNTYHLGLKP 74
          I+LGNTYHLGL+P
Sbjct: 63 ILLGNTYHLGLRP 75

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211141|gb|EFN87359.1| Probable queuine tRNA-ribosyltransferase [Harpegnathos saltator]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 58/74 (78%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          M +Q  PL F++  EC  + ART  M L HH V+TPVFMPVGT+GT+KG+LPQQLE LDC
Sbjct: 1  MESQKTPLIFEIFTECKTTKARTGRMILAHHHVDTPVFMPVGTQGTLKGLLPQQLEQLDC 60

Query: 61 QIILGNTYHLGLKP 74
          QIILGNTYHLG +P
Sbjct: 61 QIILGNTYHLGNRP 74

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156333929|ref|XP_001619449.1| hypothetical protein NEMVEDRAFT_v1g224172 [Nematostella vectensis] gi|156202666|gb|EDO27349.1| predicted protein [Nematostella vectensis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 59/72 (81%)

Query: 3  TQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQI 62
          T+   L FK++AEC  + ART ++TLPH+ VETPVFMPVGT+GT+KG+   QLE LDCQI
Sbjct: 7  TRESALTFKIIAECSTTKARTGILTLPHYRVETPVFMPVGTQGTMKGLTCSQLEDLDCQI 66

Query: 63 ILGNTYHLGLKP 74
          ILGNTYHLG++P
Sbjct: 67 ILGNTYHLGMRP 78

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
FB|FBgn0031321	427	Tgt "tRNA-guanine transglycosy	0.935	0.168	0.652	3e-23
ZFIN|ZDB-GENE-040426-1625	400	qtrt1 "queuine tRNA-ribosyltra	0.883	0.17	0.676	2.5e-21
POMBASE|SPAC1687.19c	404	SPAC1687.19c "queuine tRNA-rib	0.961	0.183	0.567	6.6e-19
UNIPROTKB|B4DFM7	225	QTRT1 "cDNA FLJ52927, highly s	0.948	0.324	0.547	5.3e-17
UNIPROTKB|K7EJ21	203	QTRT1 "Queuine tRNA-ribosyltra	0.948	0.359	0.547	5.3e-17
UNIPROTKB|K7ESP6	180	QTRT1 "Queuine tRNA-ribosyltra	0.948	0.405	0.547	5.3e-17
MGI|MGI:1931441	403	Qtrt1 "queuine tRNA-ribosyltra	0.948	0.181	0.547	1.1e-16
RGD|620996	403	Qtrt1 "queuine tRNA-ribosyltra	0.948	0.181	0.547	1.1e-16
UNIPROTKB|E2RNA1	403	QTRT1 "Queuine tRNA-ribosyltra	0.948	0.181	0.547	1.5e-16
UNIPROTKB|Q9BXR0	403	QTRT1 "Queuine tRNA-ribosyltra	0.948	0.181	0.547	1.9e-16

FB|FBgn0031321 Tgt "tRNA-guanine transglycosylase" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 47/72 (65%), Positives = 59/72 (81%)

Query:     3 TQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQI 62
             + + PL +KV+AEC VS AR  +MTL H +V TPVFMPVGT+GT+KGI+P QL  L+CQI
Sbjct:     4 SHIPPLTYKVVAECSVSKARAGLMTLRHSEVNTPVFMPVGTQGTLKGIVPDQLIELNCQI 63

Query:    63 ILGNTYHLGLKP 74
             +LGNTYHLGL+P
Sbjct:    64 LLGNTYHLGLRP 75

GO:0008616 "queuosine biosynthetic process" evidence=ISS

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=ISS

ZFIN|ZDB-GENE-040426-1625 qtrt1 "queuine tRNA-ribosyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 252 (93.8 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query:     7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGN 66
             PL  +++AECPVS AR   +TLPH  V TPVFMPVGT+GT+KGI   QLE LDCQI LGN
Sbjct:    12 PLALRIVAECPVSKARACSLTLPHCAVNTPVFMPVGTQGTMKGITADQLEDLDCQICLGN 71

Query:    67 TYHLGLKP 74
             TYHLG++P
Sbjct:    72 TYHLGMRP 79

GO:0008033 "tRNA processing" evidence=IEA

GO:0008616 "queuosine biosynthetic process" evidence=IEA

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA

GO:0006400 "tRNA modification" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

POMBASE|SPAC1687.19c SPAC1687.19c "queuine tRNA-ribosyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 231 (86.4 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 42/74 (56%), Positives = 57/74 (77%)

Query:     1 MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
             M++    LQFKV+A C  + AR + + LPH  VE+PVFMPVGT+ ++KG+LP+QL+ L C
Sbjct:     1 MASSFPALQFKVVARCSTTRARVTDIQLPHGLVESPVFMPVGTQASLKGVLPEQLDALGC 60

Query:    61 QIILGNTYHLGLKP 74
             +I+L NTYHLGLKP
Sbjct:    61 KIMLNNTYHLGLKP 74

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=ISM

GO:0008616 "queuosine biosynthetic process" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B4DFM7 QTRT1 "cDNA FLJ52927, highly similar to Queuine tRNA-ribosyltransferase (EC 2.4.2.29)" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL+ L C+
Sbjct:     9 SLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCR 68

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    69 ICLGNTYHLGLRP 81

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA

GO:0008616 "queuosine biosynthetic process" evidence=IEA

UNIPROTKB|K7EJ21 QTRT1 "Queuine tRNA-ribosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL+ L C+
Sbjct:     8 SLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCR 67

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    68 ICLGNTYHLGLRP 80

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA

GO:0008616 "queuosine biosynthetic process" evidence=IEA

UNIPROTKB|K7ESP6 QTRT1 "Queuine tRNA-ribosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL+ L C+
Sbjct:     6 SLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCR 65

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    66 ICLGNTYHLGLRP 78

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA

GO:0008616 "queuosine biosynthetic process" evidence=IEA

MGI|MGI:1931441 Qtrt1 "queuine tRNA-ribosyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/73 (54%), Positives = 52/73 (71%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL++L C+
Sbjct:     9 SLESAPRIMRLVAECSRSGARAGELRLPHGTVATPVFMPVGTQATMKGITTEQLDSLGCR 68

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    69 ICLGNTYHLGLRP 81

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006400 "tRNA modification" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IDA

GO:0008616 "queuosine biosynthetic process" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|620996 Qtrt1 "queuine tRNA-ribosyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/73 (54%), Positives = 52/73 (71%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL++L C+
Sbjct:     9 SLESAPRIMRLVAECSRSRARAGELRLPHGTVATPVFMPVGTQATMKGITAEQLDSLGCR 68

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    69 ICLGNTYHLGLRP 81

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=ISO;TAS

GO:0008616 "queuosine biosynthetic process" evidence=IEA;ISO;TAS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RNA1 QTRT1 "Queuine tRNA-ribosyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL+ L C+
Sbjct:     9 SLESAPRIMRLVAECSRSRARAGELRLPHGPVATPVFMPVGTQATMKGITAEQLDALGCR 68

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    69 ICLGNTYHLGLRP 81

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA

GO:0008616 "queuosine biosynthetic process" evidence=IEA

UNIPROTKB|Q9BXR0 QTRT1 "Queuine tRNA-ribosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query:     2 STQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQ 61
             S +  P   +++AEC  S AR   + LPH  V TPVFMPVGT+ T+KGI  +QL+ L C+
Sbjct:     9 SLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCR 68

Query:    62 IILGNTYHLGLKP 74
             I LGNTYHLGL+P
Sbjct:    69 ICLGNTYHLGLRP 81

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008616 "queuosine biosynthetic process" evidence=IEA;ISS;NAS

GO:0006400 "tRNA modification" evidence=TAS

GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=ISS;TAS

GO:0005840 "ribosome" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JMA2	TGT_MOUSE	2, ., 4, ., 2, ., 2, 9	0.5479	0.9480	0.1811	yes	N/A
Q28HC6	TGT_XENTR	2, ., 4, ., 2, ., 2, 9	0.5915	0.9220	0.1792	yes	N/A
Q029K6	TGT_SOLUE	2, ., 4, ., 2, ., 2, 9	0.5294	0.8701	0.1767	yes	N/A
B0RRR1	TGT_XANCB	2, ., 4, ., 2, ., 2, 9	0.5223	0.8441	0.1706	yes	N/A
Q6FEJ4	TGT_ACIAD	2, ., 4, ., 2, ., 2, 9	0.5373	0.8441	0.1683	yes	N/A
Q1QA23	TGT_PSYCK	2, ., 4, ., 2, ., 2, 9	0.5614	0.7402	0.1488	yes	N/A
A8ZRX7	TGT_DESOH	2, ., 4, ., 2, ., 2, 9	0.5522	0.8701	0.1744	yes	N/A
Q9BXR0	TGT_HUMAN	2, ., 4, ., 2, ., 2, 9	0.5479	0.9480	0.1811	yes	N/A
Q4QR99	TGT_RAT	2, ., 4, ., 2, ., 2, 9	0.5479	0.9480	0.1811	yes	N/A
Q5GZY3	TGT_XANOR	2, ., 4, ., 2, ., 2, 9	0.5223	0.8441	0.1706	yes	N/A
O94460	TGT_SCHPO	2, ., 4, ., 2, ., 2, 9	0.5675	0.9610	0.1831	yes	N/A
A1WFH2	TGT_VEREI	2, ., 4, ., 2, ., 2, 9	0.5522	0.8701	0.1717	yes	N/A
Q7SYK1	TGT_DANRE	2, ., 4, ., 2, ., 2, 9	0.6764	0.8831	0.17	yes	N/A
A9BRD7	TGT_DELAS	2, ., 4, ., 2, ., 2, 9	0.5373	0.8701	0.1717	yes	N/A
Q8PJL7	TGT_XANAC	2, ., 4, ., 2, ., 2, 9	0.5373	0.8441	0.1706	yes	N/A
C4XSI9	TGT_DESMR	2, ., 4, ., 2, ., 2, 9	0.5636	0.7142	0.1474	yes	N/A
Q4FRI6	TGT_PSYA2	2, ., 4, ., 2, ., 2, 9	0.5614	0.7402	0.1488	yes	N/A
A5USV3	TGT_ROSS1	2, ., 4, ., 2, ., 2, 9	0.5223	0.8701	0.1675	yes	N/A
A3M8S3	TGT_ACIBT	2, ., 4, ., 2, ., 2, 9	0.6296	0.7012	0.1432	yes	N/A
Q23623	TGT_CAEEL	2, ., 4, ., 2, ., 2, 9	0.5671	0.8441	0.1625	yes	N/A
Q4UVX2	TGT_XANC8	2, ., 4, ., 2, ., 2, 9	0.5223	0.8441	0.1706	yes	N/A
Q9VPY8	TGT_DROME	2, ., 4, ., 2, ., 2, 9	0.6527	0.9350	0.1686	yes	N/A
B1XWG6	TGT_LEPCP	2, ., 4, ., 2, ., 2, 9	0.6	0.7142	0.1410	yes	N/A
B7I976	TGT_ACIB5	2, ., 4, ., 2, ., 2, 9	0.6296	0.7012	0.1432	yes	N/A
B0VRA8	TGT_ACIBS	2, ., 4, ., 2, ., 2, 9	0.6111	0.7012	0.1432	yes	N/A
A1TVN0	TGT_ACIAC	2, ., 4, ., 2, ., 2, 9	0.5373	0.8701	0.1717	yes	N/A
Q12GB2	TGT_POLSJ	2, ., 4, ., 2, ., 2, 9	0.5689	0.7532	0.1457	yes	N/A
B7GWL4	TGT_ACIB3	2, ., 4, ., 2, ., 2, 9	0.6296	0.7012	0.1432	yes	N/A
B9MGI1	TGT_ACIET	2, ., 4, ., 2, ., 2, 9	0.5223	0.8701	0.1717	yes	N/A
A1WCK2	TGT_ACISJ	2, ., 4, ., 2, ., 2, 9	0.5223	0.8701	0.1717	yes	N/A
B0V625	TGT_ACIBY	2, ., 4, ., 2, ., 2, 9	0.6296	0.7012	0.1432	yes	N/A
Q8P868	TGT_XANCP	2, ., 4, ., 2, ., 2, 9	0.5223	0.8441	0.1706	yes	N/A
A6SUU4	TGT_JANMA	2, ., 4, ., 2, ., 2, 9	0.5223	0.8441	0.1733	yes	N/A
B4SSS1	TGT_STRM5	2, ., 4, ., 2, ., 2, 9	0.5223	0.8441	0.1728	yes	N/A
A2SM97	TGT_METPP	2, ., 4, ., 2, ., 2, 9	0.6	0.7142	0.1466	yes	N/A
B2HYN7	TGT_ACIBC	2, ., 4, ., 2, ., 2, 9	0.5373	0.8441	0.1724	yes	N/A
Q3BS37	TGT_XANC5	2, ., 4, ., 2, ., 2, 9	0.5373	0.8441	0.1706	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
PRK00112	366	PRK00112, tgt, queuine tRNA-ribosyltransferase; Pr	2e-31
COG0343	372	COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltran	1e-24
TIGR00430	368	TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosyla	1e-23
TIGR00449	367	TIGR00449, tgt_general, tRNA-guanine family transg	1e-21
PRK01008	372	PRK01008, PRK01008, queuine tRNA-ribosyltransferas	2e-09
PRK13534	639	PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ri	3e-04

>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional

 Score =  111 bits (280), Expect = 2e-31
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 7  PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGN 66
           ++F+++       AR   +T PH  VETP FMPVGT GT+KG+ P++L+    QIILGN
Sbjct: 2  MMKFELIKTD--GRARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGN 59

Query: 67 TYHLGLKP 74
          TYHL L+P
Sbjct: 60 TYHLWLRP 67

Length = 366

>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 93.5 bits (233), Expect = 1e-24
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 19 SNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
            AR   +  PH  +ETP FMPVGT GT+KG+ P++L+ L  QIIL NTYHL L+P
Sbjct: 8  GGARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLYLRP 63

Length = 372

>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase, queuosine-34-forming

 Score = 90.9 bits (226), Expect = 1e-23
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYH 69
          F++       +AR   +  PH  VETPVFMPVGT GT+KG+ P++LE    +IIL NTYH
Sbjct: 1  FELQKTD--KHARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELEATGAEIILANTYH 58

Query: 70 LGLKPVEK 77
          L L+P +K
Sbjct: 59 LWLRPGQK 66

This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes [Protein synthesis, tRNA and rRNA base modification]. Length = 368

>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYH 69
          F++       +AR   +  PH  VETPVFMPVGT GT+KG+ P++L+    QIIL NTYH
Sbjct: 1  FEIKKTD--GHARVGRLKTPHGSVETPVFMPVGTLGTVKGLTPEELKKTGAQIILANTYH 58

Query: 70 LGLKPVEK 77
          L L+P +K
Sbjct: 59 LYLRPGQK 66

Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely [Protein synthesis, tRNA and rRNA base modification]. Length = 367

>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
          L+F++L +   S AR   +   H  ++TP F+PV T G +KG+    L+  +  ++  NT
Sbjct: 3  LKFELLHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFCNT 58

Query: 68 YHLGLKP 74
          YHL + P
Sbjct: 59 YHLLVHP 65

Length = 372

>gnl|CDD|237418 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTY 68
           R   +      +ETP  MPV      + + P +++ L   I++ N+Y
Sbjct: 11 GRIGKLKTNGKKIETPTIMPVINPK-KQTVDPDEIKKLGFDIVITNSY 57

Length = 639

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
COG0343	372	Tgt Queuine/archaeosine tRNA-ribosyltransferase [T	99.96
KOG3908|consensus	396		99.95
PRK01008	372	queuine tRNA-ribosyltransferase; Provisional	99.95
PRK00112	366	tgt queuine tRNA-ribosyltransferase; Provisional	99.94
TIGR00449	367	tgt_general tRNA-guanine transglycosylases, variou	99.94
TIGR00430	368	Q_tRNA_tgt tRNA-guanine transglycosylase, queuosin	99.94
PRK13534	639	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	99.94
PRK13533	487	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	99.92
KOG3909|consensus	414		85.68
PF10504	159	DUF2452: Protein of unknown function (DUF2452); In	84.94

>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=5.9e-30  Score=196.55  Aligned_cols=66  Identities=52%  Similarity=0.842  Sum_probs=62.8

Q ss_pred             EEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035         10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus        10 F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      |+++++|.  +||+|+|+|+||+||||+||||||+|+||++++++|+++|+||||+||||||+|||.+
T Consensus         1 f~~~~~d~--~aR~G~l~t~hg~ieTP~FmPVgt~~~vk~~~~~~l~~~ga~iil~NtYhl~lrpg~e   66 (372)
T COG0343           1 FEILAKDG--GARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLYLRPGLE   66 (372)
T ss_pred             CeeeccCC--CeeeEEEEcCCCcccCCceeecccccccccCCHHHHHhcCCCEEeeceeeeeeCCchh
Confidence            67777775  9999999999999999999999999999999999999999999999999999999974

>KOG3908|consensus

Probab=99.95  E-value=1.6e-29  Score=192.29  Aligned_cols=77  Identities=58%  Similarity=1.106  Sum_probs=73.2

Q ss_pred             CCCCCCceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035          1 MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus         1 ~~~~~~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      |..+.+++.|++.++|+.++||+|.|++||+.||||+||||||||++||+.||||.++||+|+|+|||||.+|||.|
T Consensus         1 ~~s~~~~~~~kvvarcs~t~AR~g~l~Lph~~vetPVFMPVGTqgtmKGI~peqL~~l~Cri~L~NTYHLGlrPG~E   77 (396)
T KOG3908|consen    1 MASSFPPLDFKVVARCSTTRARVGTLELPHSSVETPVFMPVGTQGTMKGIVPEQLDELGCRILLGNTYHLGLRPGHE   77 (396)
T ss_pred             CCCccCchhhhhhhhhcccccceeeeecCCcccccceeeecccccccccccHHHHHhcCCEEEeccceecccCCcHH
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999965

>PRK01008 queuine tRNA-ribosyltransferase; Provisional

Probab=99.95  E-value=1e-28  Score=189.38  Aligned_cols=67  Identities=34%  Similarity=0.642  Sum_probs=63.4

Q ss_pred             ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035          7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus         7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      .|.|+|.++|..++||+|+|+|+||+|+||+||||||+|+||++    |+++|+|+||+||||||+|||.+
T Consensus         2 ~~~F~i~~~~~~~~aR~G~l~t~hG~i~TP~fmPVgt~~~vk~l----l~~~g~~iil~NtyhL~lrpg~~   68 (372)
T PRK01008          2 ALKFELLHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFCNTYHLLVHPGTE   68 (372)
T ss_pred             ceEEEEEeccCCCccceeEEEeCCcceeCCceeecccHHHHHHH----HHHcCCCEEEechhhhhhCCCHH
Confidence            47899999877789999999999999999999999999999999    89999999999999999999964

>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional

Probab=99.94  E-value=9.9e-28  Score=182.73  Aligned_cols=69  Identities=49%  Similarity=0.793  Sum_probs=66.0

Q ss_pred             ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035          7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus         7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      .|.|+|.++|.  .||+|+|+|+||.|+||+||||+|+|+||+|++++|+++|+|+||+||||||+|||++
T Consensus         2 ~~~F~i~~~~~--~aR~G~l~t~hg~i~TP~fmpv~t~g~v~~lt~~~l~~~g~~~il~ntyhl~l~pg~~   70 (366)
T PRK00112          2 MMKFELIKTDG--RARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYHLWLRPGLE   70 (366)
T ss_pred             CcEEEEEeccC--CcceeEEEcCCcceeCCceeeccCCCcCCcCCHHHHHHcCCCeEeccHHHHhhCCcHH
Confidence            57899999984  7999999999999999999999999999999999999999999999999999999964

>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities

Probab=99.94  E-value=9.5e-28  Score=182.87  Aligned_cols=66  Identities=52%  Similarity=0.833  Sum_probs=63.4

Q ss_pred             EEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035         10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus        10 F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      |+|.++|.  .||+|+|+|+||.|+||+||||||+|+||+|++++|+++|+|+||+||||||+|||.+
T Consensus         1 F~i~~~~~--~aR~G~l~t~hg~i~TP~fmpv~t~g~vk~l~~~~l~~~g~~~il~Ntyhl~l~pg~~   66 (367)
T TIGR00449         1 FEIKKTDG--HARVGRLKTPHGSVETPVFMPVGTLGTVKGLTPEELKKTGAQIILANTYHLYLRPGQK   66 (367)
T ss_pred             CEEEeccC--CcceeEEEcCCceeeCCceEeeccCCcCCcCCHHHHHHcCCCEEecchhhhhcCCcHH
Confidence            89999885  7999999999999999999999999999999999999999999999999999999963

Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.

>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming

Probab=99.94  E-value=1.1e-27  Score=182.65  Aligned_cols=66  Identities=52%  Similarity=0.847  Sum_probs=63.4

Q ss_pred             EEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035         10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus        10 F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      |+|.++|.  .||+|+|+|+||.|+||+||||||+|+||+|++++|+++|+|+||+|||||++|||.+
T Consensus         1 f~i~~~~~--~aR~G~l~t~hg~i~TP~fmpv~t~g~vk~lt~~~l~~~g~~~il~Ntyhl~~rpg~~   66 (368)
T TIGR00430         1 FELQKTDK--HARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELEATGAEIILANTYHLWLRPGQK   66 (368)
T ss_pred             CEEEeccC--CcceeEEEcCCceeeCCceEecccccccCccCHHHHHHcCCCeEeccHHHHhhCCcHH
Confidence            78999886  6999999999999999999999999999999999999999999999999999999964

This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.

>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=99.94  E-value=3.4e-27  Score=190.21  Aligned_cols=65  Identities=23%  Similarity=0.370  Sum_probs=62.7

Q ss_pred             eEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCC
Q psy11035          9 QFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVE   76 (77)
Q Consensus         9 ~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~   76 (77)
                      .|||.++|.  +||+|+|+|+||+|+||+||||| +++||+|+++||+++|+|+||+||||||+|||.
T Consensus         1 ~Fei~~~d~--~aR~G~l~t~hg~i~TP~fmPV~-~~~vk~~~~~~l~~~g~~~il~NtYhl~~~pg~   65 (639)
T PRK13534          1 MFEIKARDA--LGRIGKLKTNGKKIETPTIMPVI-NPKKQTVDPDEIKKLGFDIVITNSYIIYKTPEL   65 (639)
T ss_pred             CeEEEeccC--CcceEEEEcCCeeeeCCceeecc-cchhcccCHHHHHHhCCCEEEehhhhhhhCCch
Confidence            499999985  89999999999999999999999 999999999999999999999999999999985

>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=99.92  E-value=3.5e-26  Score=179.94  Aligned_cols=64  Identities=25%  Similarity=0.420  Sum_probs=61.3

Q ss_pred             ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEecccccccc
Q psy11035          7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLK   73 (77)
Q Consensus         7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~r   73 (77)
                      .+.|||.++|.  +||+|+|+|+||+|+||+||||| +++||++++++|+++|+|+||+||||||+|
T Consensus         2 ~~~Fei~~~d~--~aR~G~l~t~hg~ieTP~fmPV~-~~~~k~l~~~~l~~~g~~~il~NtYhl~~r   65 (487)
T PRK13533          2 MMVFEIRDKDL--AGRIGKLKTPHGVVETPALFPVI-NPNKQEISPDELKEFGAEILITNSYIIYRS   65 (487)
T ss_pred             CceEEEeeccC--CcceeEEEcCCceeeCCceeecc-cchhcccCHHHHHHhCCCEEEeeHHHHHhh
Confidence            46799999985  89999999999999999999999 899999999999999999999999999998

>KOG3909|consensus

Probab=85.68  E-value=1.5  Score=34.98  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=40.4

Q ss_pred             eeEEEEeecCCCCeeEEEEEcCCe--eecCCeeeeecccCcccccChHHHhc
Q psy11035          8 LQFKVLAECPVSNARTSVMTLPHH--DVETPVFMPVGTKGTIKGILPQQLET   57 (77)
Q Consensus         8 ~~F~i~~~~~~~~aR~G~l~t~hG--~ieTP~FmPVgT~g~vK~lt~~~l~~   57 (77)
                      |+|.|...-.  .+|.|.|....|  +..||.|+---..|++--||++-+++
T Consensus         1 mkfsies~~n--ggRLgki~~~sg~~~~ktP~fllytk~GsiPhLT~dv~en   50 (414)
T KOG3909|consen    1 MKFSIESSPN--GGRLGKITVGSGNKVLKTPCFLLYTKRGSIPHLTPDVVEN   50 (414)
T ss_pred             CceeeeeccC--CceeeeeeeccCCeeecCcceEeeccCCCCCcCCHHHHhh
Confidence            5688877653  799999997555  78999998888899999999998887

>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function

Probab=84.94  E-value=0.38  Score=33.97  Aligned_cols=18  Identities=28%  Similarity=0.353  Sum_probs=15.7

Q ss_pred             cCCcEEEeccccccccCC
Q psy11035         58 LDCQIILGNTYHLGLKPV   75 (77)
Q Consensus        58 ~g~~iiL~NtYHL~~rPG   75 (77)
                      .+++=|.+++||||.|+.
T Consensus        86 cnF~pipG~iYhLY~r~~  103 (159)
T PF10504_consen   86 CNFEPIPGQIYHLYRREN  103 (159)
T ss_pred             cCceecCCCEEEEEECCC
Confidence            577789999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	77
2ash_A	381	Crystal Structure Of Queuine Trna-Ribosyltransferas		7e-12
4hsh_A	385	Trna-Guanine Transglycosylase Y106f, V233g Mutant I		8e-10
4hqv_A	385	Trna-Guanine Transglycosylase Y106f, C158v, V233g M		8e-10
1y5v_A	385	Trna-guanine Transglycosylase (tgt) In Complex With		8e-10
1ozm_A	386	Y106f Mutant Of Z. Mobilis Tgt Length = 386		8e-10
1pxg_A	382	Crystal Structure Of The Mutated Trna-Guanine Trans		8e-10
1efz_A	386	Mutagenesis And Crystallographic Studies Of Zymomon		8e-10
3uvi_A	388	Trna-Guanine Transglycosylase C158s C281s W326e E33		8e-10
3unt_A	388	Trna-Guanine Transglycosylase E339q Mutant Length =		8e-10
4gd0_A	386	Trna-Guanine Transglycosylase Y106f, C158v Mutant L		8e-10
4gcx_A	386	Trna-Guanine Transglycosylase Y106f, C158v, V233g M		8e-10
3bl3_A	386	Trna Guanine Transglycosylase V233g Mutant Apo Stru		8e-10
2nso_A	386	Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f,		8e-10
2nqz_A	385	Trna-Guanine Transglycosylase (Tgt) Mutant In Compl		8e-10
2pot_A	386	Trna Guanine Transglycosylase (Tgt) E235q Mutant In		8e-10
2oko_A	385	Z. Mobilis Trna Guanine Transglycosylase E235q Muta		8e-10
1wkd_A	386	Trna-Guanine Transglycosylase Length = 386		8e-10
1wke_A	386	Trna-Guanine Transglycosylase Length = 386		8e-10
1wkf_A	386	Trna-Guanine Transglycosylase Length = 386		8e-10
1enu_A	386	A New Target For Shigellosis: Rational Design And C		8e-10
3hfy_A	386	Mutant Of Trna-Guanine Transglycosylase (K52m) Leng		4e-09

>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga Maritima At 1.90 A Resolution Length = 381

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          AR  VM L H  VETPVFMPVGT  ++K + P+ LE    +IIL NT+HL LKP
Sbjct: 24 ARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKP 77

>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In Complex With Queuine Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77

>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Queuine Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77

>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With 6-amino-4-(2- Phenylethyl)-1,7-dihydro-8h-imidazo[4, 5-g]quinazolin-8-one Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77

>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine Transglycosylase (Tgt) D280e Complexed With Preq1 Length = 382

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77

>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas Mobilis Trna- Guanine Transglycosylase To Elucidate The Role Of Serine 103 For Enzymatic Activity Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q Mutant Length = 388

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 27 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 80

>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant Length = 388

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 27 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 80

>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Preq1 Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v, A232s, V233g- Apo-Structure Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With 7-Deaza-7- Aminomethyl-Guanine Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77

>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In Complex With Guanine Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant Apo-Structure At Ph 5.5 Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77

>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And Crystallographic Studies Of Inhibitors Of Trna-Guanine Transglycosylase Length = 386

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+K + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78

>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m) Length = 386

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
          ART  + +    + TP FMPVGT  T+  + P+ +      IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVMALKPETVRATGADIILGNTYHLMLRP 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	77
2ash_A	381	Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan	1e-30
3bld_A	386	Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco	4e-29
1iq8_A	582	Archaeosine tRNA-guanine transglycosylase; (alpha/	2e-26

>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Length = 381

 Score =  109 bits (275), Expect = 1e-30
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          +      ++F+V        AR  VM L H  VETPVFMPVGT  ++K + P+ LE    
Sbjct: 6  IHHHHHHMEFEVKKTF--GKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGA 63

Query: 61 QIILGNTYHLGLKP 74
          +IIL NT+HL LKP
Sbjct: 64 EIILSNTFHLMLKP 77

>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Length = 386

 Score =  104 bits (263), Expect = 4e-29
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
            F + A      ART  + +    + TP FMPVGT  T+K + P+ +      IILGNT
Sbjct: 14 FSFSIAARE--GKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNT 71

Query: 68 YHLGLKP 74
          YHL L+P
Sbjct: 72 YHLMLRP 78

>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Length = 582

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          MS   + L+F++ A       R   + +    +ETP  MPV     +  + P++LE +  
Sbjct: 1  MSRGDKMLKFEIKARD--GAGRIGKLEVNGKKIETPAIMPVVNPKQMV-VEPKELEKMGF 57

Query: 61 QIILGNTYHLGLKP 74
          +II+ N+Y +    
Sbjct: 58 EIIITNSYIIYKDE 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
3bld_A	386	Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco	99.96
2ash_A	381	Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan	99.96
1iq8_A	582	Archaeosine tRNA-guanine transglycosylase; (alpha/	99.94

>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...

Probab=99.96  E-value=4.1e-30  Score=196.28  Aligned_cols=71  Identities=38%  Similarity=0.649  Sum_probs=67.2

Q ss_pred             CCceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035          5 VRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus         5 ~~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      .+.|+|+|+++|  ++||+|+|+|+||+|+||+||||||+|+||+|++++|+++|+||||+||||||+|||.|
T Consensus        11 ~~~m~F~i~~~~--~~aR~G~l~t~hg~i~TP~fmpVgt~gtvk~lt~~~l~~~g~~iil~Ntyhl~lrPg~~   81 (386)
T 3bld_A           11 RPRFSFSIAARE--GKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAE   81 (386)
T ss_dssp             CCSCEEEEEEEE--TTEEEEEEEETTEEEEESEECCEESSSSBTTCCHHHHHHTTCSCEEECHHHHHHTTCHH
T ss_pred             ccceEEEEEEEE--CCeeeEEEEeCCeeeECCeeEEeecCCcCCcCCHHHHHHcCCCEEecchHHHhhcCcHH
Confidence            356889999999  58999999999999999999999999999999999999999999999999999999963

>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima}

Probab=99.96  E-value=9.7e-30  Score=194.28  Aligned_cols=69  Identities=48%  Similarity=0.724  Sum_probs=65.5

Q ss_pred             ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035          7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK   77 (77)
Q Consensus         7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~   77 (77)
                      -|.||+++++.  +||+|+|+|+||+|+||+||||||+|+||+|++++|+++|+||||+||||||+|||.+
T Consensus        12 ~~~~~~~~~~~--~aR~G~l~t~hg~i~TP~fmPVgt~gtvk~lt~~~l~~~g~~iiL~NtyhL~lrPg~~   80 (381)
T 2ash_A           12 HMEFEVKKTFG--KARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKPGVE   80 (381)
T ss_dssp             -CEEEEEEEET--TEEEEEEEETTEEEEESEEEEEESSSSCTTCCHHHHHHHTCSCEEECCHHHHHTTCHH
T ss_pred             ceeEEEEcCCC--ceeeEEEEECCeeEECCeEEEeecCCcCCcCCHHHHHHcCCCEEehhHHHHhhCCcHH
Confidence            47899999985  8999999999999999999999999999999999999999999999999999999953

>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A

Probab=99.94  E-value=1.1e-27  Score=189.52  Aligned_cols=73  Identities=26%  Similarity=0.363  Sum_probs=65.7

Q ss_pred             CCCCCCceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCC
Q psy11035          1 MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVE   76 (77)
Q Consensus         1 ~~~~~~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~   76 (77)
                      |+...+.|+|+|+++|.  +||+|+|+|+||+|+||+|||||| |+||+|++++|+++|+|+||+||||||+|||.
T Consensus         1 ~~~~~~~~~F~i~~~~~--~aR~G~l~t~hg~i~TP~fmpvgt-~~vk~lt~~~l~~~g~~iil~Ntyhl~lrp~~   73 (582)
T 1iq8_A            1 MSRGDKMLKFEIKARDG--AGRIGKLEVNGKKIETPAIMPVVN-PKQMVVEPKELEKMGFEIIITNSYIIYKDEEL   73 (582)
T ss_dssp             -----CCEEEEEEEEET--TEEEEEEEETTEEEEESEEEEBCC-SSSCSSCHHHHHHTTCCEEEEEHHHHHHCHHH
T ss_pred             CCCCCCceEEEEEEeeC--CceEEEEEeCCeeeeCCceEeecC-CcCCCCCHHHHHhcCCCceecchhheeeCcch
Confidence            66777889999999984  899999999999999999999999 99999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	77
d1r5ya_	372	c.1.20.1 (A:) Queosine tRNA-guanine transglycosyla	7e-25
d1iq8a1	355	c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transg	9e-25

>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} Length = 372

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

 Score = 92.6 bits (229), Expect = 7e-25
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
            F + A      ART  + +    + TP FMPVGT  T+K + P+ +      IILGNT
Sbjct: 4  FSFSIAARE--GKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNT 61

Query: 68 YHLGLKP 74
          YHL L+P
Sbjct: 62 YHLMLRP 68

>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 355

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 92.2 bits (228), Expect = 9e-25
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 6  RPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILG 65
          + L+F++ A       R   + +    +ETP  MPV     +  + P++LE +  +II+ 
Sbjct: 1  KMLKFEIKARD--GAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIIT 57

Query: 66 NTYHLGLKP 74
          N+Y +    
Sbjct: 58 NSYIIYKDE 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d1iq8a1	355	Archaeosine tRNA-guanine transglycosylase, N-termi	99.94
d1r5ya_	372	Queosine tRNA-guanine transglycosylase {Zymomonas	99.94

>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=9.5e-28  Score=178.40  Aligned_cols=67  Identities=25%  Similarity=0.398  Sum_probs=64.3

Q ss_pred             ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCC
Q psy11035          7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVE   76 (77)
Q Consensus         7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~   76 (77)
                      +|+|+|+++|.  +||+|+|+|+||.|+||+||||+|+|+| +++|++|+++|+|+||+|||||++|||.
T Consensus         2 m~~F~i~~~d~--~AR~G~l~~~~g~i~TP~fmpv~t~~~v-~~~p~~l~~~g~~iil~NtYhl~~~p~~   68 (355)
T d1iq8a1           2 MLKFEIKARDG--AGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIITNSYIIYKDEEL   68 (355)
T ss_dssp             CEEEEEEEEET--TEEEEEEEETTEEEEESEEEEBCCSSSC-SSCHHHHHHTTCCEEEEEHHHHHHCHHH
T ss_pred             ceEEEEEeeeC--CcceEEEEeCCeeeeCCceeeeecCCcc-ccCHHHHHHhCCCEEeccccccCCCCCc
Confidence            68999999986  8999999999999999999999999999 8999999999999999999999999984

>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.94  E-value=9.4e-28  Score=179.51  Aligned_cols=69  Identities=39%  Similarity=0.662  Sum_probs=66.4

Q ss_pred             CceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCC
Q psy11035          6 RPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVE   76 (77)
Q Consensus         6 ~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~   76 (77)
                      +.|+|||+++|.  +||+|+|.|+||.|+||+||||+|+|+||.|++++|+++|+|+||+|||||++|||.
T Consensus         2 ~~~~Fei~~~d~--~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~   70 (372)
T d1r5ya_           2 PRFSFSIAAREG--KARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGA   70 (372)
T ss_dssp             CSCEEEEEEEET--TEEEEEEEETTEEEEESEEECBCTTSSCTTCCHHHHHHTTCSCEEEEHHHHHHTTCH
T ss_pred             CceEEEEEeccC--ceeeEEEEECCEEeECCEEEecCCCCcCCcCCHHHHHHcCCCEEechHHHHHhCCcc
Confidence            468999999985  899999999999999999999999999999999999999999999999999999995